Start: 2018-09-20 03:15:53 UTC Package: nanook Version: 1.33+dfsg-1 Installed-Size: 283 Maintainer: Debian Med Packaging Team Architecture: all Depends: libcommons-io-java, default-jre-headless, r-cran-ggplot2, r-cran-scales, r-cran-gridextra, r-cran-reshape, texlive-latex-base, hdf5-tools, last-align Recommends: blasr, bwa Suggests: default-jre Description: pre- and post-alignment analysis of nanopore sequencing data Homepage: https://documentation.tgac.ac.uk/display/NANOOK/NanoOK Description-md5: beffa937620d2a184e3ed1c1c9fd8d07 Section: science Priority: optional Filename: pool/main/n/nanook/nanook_1.33+dfsg-1_all.deb Size: 192016 MD5sum: 22560869d78e8f34fe8cf8d0a47472a9 SHA256: 05f5eb43287d709b8e8b656607393adbc613bf0a40299c1e992f47c64fec546e Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz -d sid --no-upgrade-test --apt nanook=1.33+dfsg-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.92~201809130951~0.91-23-g805ff154 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz -d sid --no-upgrade-test --apt nanook=1.33+dfsg-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.9.0-8-amd64 #1 SMP Debian 4.9.110-3+deb9u4 (2018-08-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp1H2D7V 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp1H2D7V 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz'] 0m4.0s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/sid_amd64.tar.gz'] 0m4.0s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp1H2D7V/proc'] 0m4.0s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp1H2D7V/proc'] 0m4.0s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp1H2D7V/dev/pts'] 0m4.0s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp1H2D7V/dev/pts'] 0m4.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp1H2D7V/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp1H2D7V/dev/ptmx'] 0m4.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp1H2D7V/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp1H2D7V/dev/ptmx'] 0m4.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp1H2D7V/dev/console'] 0m4.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp1H2D7V/dev/console'] 0m4.1s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp1H2D7V/dev/shm'] 0m4.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp1H2D7V/dev/shm'] 0m4.2s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ sid main 0m4.2s DEBUG: Created policy-rc.d and chmodded it. 0m4.2s DEBUG: Created resolv.conf. 0m4.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmp1H2D7V/tmp/scripts/ 0m4.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp1H2D7V/tmp/scripts/ 0m4.2s INFO: Running scripts post_chroot_unpack 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'apt-get', 'update'] 0m9.7s DUMP: Get:1 http://mirror-ubc.debian.org/debian sid InRelease [233 kB] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 Packages [8253 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main Translation-en [6198 kB] Fetched 14.7 MB in 7s (2175 kB/s) Reading package lists... 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'apt-get', 'update'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'apt-get', '-yf', 'dist-upgrade'] 0m10.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'apt-get', '-yf', 'dist-upgrade'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m10.5s DUMP: d1f9a640374839abb4d1f943e267c1d3 - 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m10.5s INFO: Running scripts post_setup 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/post_setup_dummy_users'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/post_setup_dummy_users'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/post_setup_forbid_home'] 0m11.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/post_setup_forbid_home'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/post_setup_force-unsafe-io'] 0m11.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' '/bin/sync' -> 'true' 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/post_setup_force-unsafe-io'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/post_setup_minimize'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/post_setup_minimize'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/post_setup_squeeze-backports'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/post_setup_squeeze-backports'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/post_setup_zz_backports'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/post_setup_zz_backports'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'apt-get', 'clean'] 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'apt-get', 'clean'] 0m11.6s DEBUG: Recording chroot state 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m12.2s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.7.0~rc1 install ok installed base-files base-files 10.1 install ok installed base-passwd base-passwd 3.5.45 install ok installed bash bash 4.4.18-3.1 install ok installed bsdutils bsdutils 1:2.32.1-0.1 install ok installed coreutils coreutils 8.30-1 install ok installed dash dash 0.5.10.2-1 install ok installed debconf debconf 1.5.69 install ok installed debian-archive-keyring debian-archive-keyring 2017.7 install ok installed debianutils debianutils 4.8.6 install ok installed diffutils diffutils 1:3.6-1 install ok installed dpkg dpkg 1.19.0.5+b1 install ok installed e2fsprogs e2fsprogs 1.44.4-2 install ok installed fdisk fdisk 2.32.1-0.1 install ok installed findutils findutils 4.6.0+git+20180808-2 install ok installed gcc-8-base:amd64 gcc-8-base 8.2.0-7 install ok installed gpgv gpgv 2.2.10-1 install ok installed grep grep 3.1-2 install ok installed gzip gzip 1.9-2 install ok installed hostname hostname 3.20 install ok installed init-system-helpers init-system-helpers 1.54 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.7.0~rc1 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.8.4-2 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-2 install ok installed libblkid1:amd64 libblkid1 2.32.1-0.1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9 install ok installed libc-bin libc-bin 2.27-6 install ok installed libc6:amd64 libc6 2.27-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-1 install ok installed libcom-err2:amd64 libcom-err2 1.44.4-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.2 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.244 install ok installed libext2fs2:amd64 libext2fs2 1.44.4-2 install ok installed libfdisk1:amd64 libfdisk1 2.32.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-8 install ok installed libgcc1:amd64 libgcc1 1:8.2.0-7 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.3-1 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.5.19-1+b1 install ok installed libgpg-error0:amd64 libgpg-error0 1.32-1 install ok installed libhogweed4:amd64 libhogweed4 3.4-1 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1 install ok installed liblz4-1:amd64 liblz4-1 1.8.2-1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.3 install ok installed libmount1:amd64 libmount1 2.32.1-0.1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20180714-1 install ok installed libnettle6:amd64 libnettle6 3.4-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.14-2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.8 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.8 install ok installed libpam-runtime libpam-runtime 1.1.8-3.8 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.8 install ok installed libpcre3:amd64 libpcre3 2:8.39-11 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-3 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-1 install ok installed libsemanage1:amd64 libsemanage1 2.8-1+b1 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.32.1-0.1 install ok installed libss2:amd64 libss2 1.44.4-2 install ok installed libstdc++6:amd64 libstdc++6 8.2.0-7 install ok installed libsystemd0:amd64 libsystemd0 239-9 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtinfo6:amd64 libtinfo6 6.1+20180714-1 install ok installed libudev1:amd64 libudev1 239-9 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.32.1-0.1 install ok installed libzstd1:amd64 libzstd1 1.3.5+dfsg-1 install ok installed login login 1:4.5-1.1 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.32.1-0.1 install ok installed ncurses-base ncurses-base 6.1+20180714-1 install ok installed ncurses-bin ncurses-bin 6.1+20180714-1 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl-base perl-base 5.26.2-7 install ok installed sed sed 4.5-1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.10 install ok installed tar tar 1.30+dfsg-2 install ok installed util-linux util-linux 2.32.1-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'dpkg-divert', '--list'] 0m12.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'dpkg-divert', '--list'] 0m12.3s INFO: Running scripts is_testable 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/is_testable_uninstallable'] 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/is_testable_uninstallable'] 0m12.3s INFO: apt-cache does not know about any of the requested packages 0m12.3s INFO: Running scripts pre_test 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_test_exceptions'] 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_test_exceptions'] 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_test_root_password'] 0m12.3s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_test_root_password'] 0m12.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1H2D7V'] 0m12.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1H2D7V'] 0m13.1s DEBUG: No broken symlinks as far as we can find. 0m13.1s INFO: Running scripts pre_install 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_install_database-server'] 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_install_database-server'] 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_install_exceptions'] 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_install_exceptions'] 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_install_extras'] 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_install_extras'] 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_install_foreign_architecture'] 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_install_foreign_architecture'] 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_install_log_alternatives'] 0m13.1s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_install_log_alternatives'] 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'apt-cache', 'show', '--no-all-versions', 'nanook=1.33+dfsg-1'] 0m14.4s DUMP: Package: nanook Version: 1.33+dfsg-1 Installed-Size: 283 Maintainer: Debian Med Packaging Team Architecture: all Depends: libcommons-io-java, default-jre-headless, r-cran-ggplot2, r-cran-scales, r-cran-gridextra, r-cran-reshape, texlive-latex-base, hdf5-tools, last-align Recommends: blasr, bwa Suggests: default-jre Description-en: pre- and post-alignment analysis of nanopore sequencing data NanoOK is a flexible, multi-reference software for pre- and post- alignment analysis of nanopore sequencing data, quality and error profiles. . NanoOK (pronounced na-nook) is a tool for extraction, alignment and analysis of Nanopore reads. NanoOK will extract reads as FASTA or FASTQ files, align them (with a choice of alignment tools), then generate a comprehensive multi-page PDF report containing yield, accuracy and quality analysis. Along the way, it generates plain text files which can be used for further analysis, as well as graphs suitable for inclusion in presentations and papers. Description-md5: beffa937620d2a184e3ed1c1c9fd8d07 Homepage: https://documentation.tgac.ac.uk/display/NANOOK/NanoOK Section: science Priority: optional Filename: pool/main/n/nanook/nanook_1.33+dfsg-1_all.deb Size: 192016 MD5sum: 22560869d78e8f34fe8cf8d0a47472a9 SHA256: 05f5eb43287d709b8e8b656607393adbc613bf0a40299c1e992f47c64fec546e 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'apt-cache', 'show', '--no-all-versions', 'nanook=1.33+dfsg-1'] 0m14.4s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed Depends: libcommons-io-java, default-jre-headless, r-cran-ggplot2, r-cran-scales, r-cran-gridextra, r-cran-reshape, texlive-latex-base, hdf5-tools, last-align 0m14.4s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpGHqq1G/piuparts-depends-dummy'] 0m14.5s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpGHqq1G/piuparts-depends-dummy.deb'. 0m14.5s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpGHqq1G/piuparts-depends-dummy'] 0m14.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m14.5s DUMP: 1.7.0~rc1 0m14.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'dpkg-query', '-f', '${Version}\n', '-W', 'apt'] 0m14.5s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpGHqq1G/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmp1H2D7V/tmp 0m14.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 1m3.8s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ca-certificates ca-certificates-java default-jre-headless fontconfig fontconfig-config fonts-dejavu-core fonts-lmodern hdf5-tools java-common last-align libaec0 libapache-pom-java libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libbrotli1 libbsd0 libcairo2 libcommons-io-java libcommons-parent-java libcups2 libcupsimage2 libcurl4 libdatrie1 libdbus-1-3 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgdbm-compat4 libgdbm5 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libharfbuzz-icu0 libharfbuzz0b libhdf5-100 libice6 libicu-le-hb0 libicu60 libidn11 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-2.4-2 libldap-common libmpfr6 libncurses6 libnghttp2-14 libnspr4 libnss3 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcsclite1 libperl5.26 libpixman-1-0 libpng16-16 libpotrace0 libprocps7 libpsl5 libptexenc1 libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libsensors4 libsm6 libsqlite3-0 libssh2-1 libssl1.1 libsynctex2 libsz2 libtcl8.6 libtexlua52 libtexlua53 libtexluajit2 libthai-data libthai0 libtiff5 libtk8.6 libwoff1 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libxtst6 libxxhash0 libzzip-0-13 littler lsb-base openjdk-10-jre-headless openssl parallel perl perl-modules-5.26 poppler-data procps r-base-core r-cran-assertthat r-cran-cli r-cran-colorspace r-cran-crayon r-cran-digest r-cran-fansi r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-labeling r-cran-lattice r-cran-lazyeval r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-reshape r-cran-reshape2 r-cran-rlang r-cran-scales r-cran-stringi r-cran-stringr r-cran-tibble r-cran-utf8 r-cran-viridislite r-cran-withr readline-common sensible-utils sysstat t1utils tex-common texlive-base texlive-binaries texlive-latex-base tzdata ucf unzip x11-common xdg-utils xz-utils zip Suggested packages: default-jre libcommons-io-java-doc cups-common gdbm-l10n krb5-doc krb5-user liblcms2-utils pcscd lm-sensors tcl8.6 tk8.6 libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum ess r-doc-info | r-doc-pdf r-mathlib r-base-html libgdal-dev r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-dichromat r-cran-shiny r-cran-shinyjs r-cran-rstudioapi r-cran-knitr r-cran-rmarkdown r-cran-dplyr r-cran-hmisc r-cran-maps r-cran-maptools r-cran-multcomp r-cran-quantreg r-cran-rpart r-cran-dbi r-cran-rsqlite r-cran-r.utils r-cran-forcats r-cran-getopt r-cran-foreach r-cran-doparallel r-cran-iterators r-cran-inline readline-doc isag debhelper gv | postscript-viewer perl-tk xpdf-reader | pdf-viewer texlive-latex-base-doc Recommended packages: python python-pil libcupsfilters1 dbus libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback krb5-locales libgpm2 publicsuffix libsasl2-modules netbase psmisc r-recommended r-base-dev r-doc-html r-cran-testthat r-cran-mockery r-cran-sp r-cran-mapproj r-cran-hexbin r-cran-lubridate r-cran-domc r-cran-abind r-cran-bit64 r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-data.table r-cran-rsqlite r-cran-knitr r-cran-dplyr r-cran-mockr r-cran-dbi cron | cron-daemon lmodern libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ca-certificates ca-certificates-java default-jre-headless fontconfig fontconfig-config fonts-dejavu-core fonts-lmodern hdf5-tools java-common last-align libaec0 libapache-pom-java libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libbrotli1 libbsd0 libcairo2 libcommons-io-java libcommons-parent-java libcups2 libcupsimage2 libcurl4 libdatrie1 libdbus-1-3 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgdbm-compat4 libgdbm5 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libharfbuzz-icu0 libharfbuzz0b libhdf5-100 libice6 libicu-le-hb0 libicu60 libidn11 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-2.4-2 libldap-common libmpfr6 libncurses6 libnghttp2-14 libnspr4 libnss3 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcsclite1 libperl5.26 libpixman-1-0 libpng16-16 libpotrace0 libprocps7 libpsl5 libptexenc1 libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libsensors4 libsm6 libsqlite3-0 libssh2-1 libssl1.1 libsynctex2 libsz2 libtcl8.6 libtexlua52 libtexlua53 libtexluajit2 libthai-data libthai0 libtiff5 libtk8.6 libwoff1 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libxtst6 libxxhash0 libzzip-0-13 littler lsb-base openjdk-10-jre-headless openssl parallel perl perl-modules-5.26 piuparts-depends-dummy poppler-data procps r-base-core r-cran-assertthat r-cran-cli r-cran-colorspace r-cran-crayon r-cran-digest r-cran-fansi r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-labeling r-cran-lattice r-cran-lazyeval r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-reshape r-cran-reshape2 r-cran-rlang r-cran-scales r-cran-stringi r-cran-stringr r-cran-tibble r-cran-utf8 r-cran-viridislite r-cran-withr readline-common sensible-utils sysstat t1utils tex-common texlive-base texlive-binaries texlive-latex-base tzdata ucf unzip x11-common xdg-utils xz-utils zip 0 upgraded, 180 newly installed, 0 to remove and 0 not upgraded. Need to get 180 MB/180 MB of archives. After this operation, 596 MB of additional disk space will be used. Get:1 /tmp/piuparts-depends-dummy.deb piuparts-depends-dummy all 0.invalid.0 [714 B] Get:2 http://mirror-ubc.debian.org/debian sid/main amd64 perl-modules-5.26 all 5.26.2-7 [2825 kB] Get:3 http://mirror-ubc.debian.org/debian sid/main amd64 libgdbm5 amd64 1.14.1-6+b1 [57.6 kB] Get:4 http://mirror-ubc.debian.org/debian sid/main amd64 libgdbm-compat4 amd64 1.14.1-6+b1 [39.1 kB] Get:5 http://mirror-ubc.debian.org/debian sid/main amd64 libperl5.26 amd64 5.26.2-7 [3595 kB] Get:6 http://mirror-ubc.debian.org/debian sid/main amd64 perl amd64 5.26.2-7 [202 kB] Get:7 http://mirror-ubc.debian.org/debian sid/main amd64 poppler-data all 0.4.9-2 [1473 kB] Get:8 http://mirror-ubc.debian.org/debian sid/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:9 http://mirror-ubc.debian.org/debian sid/main amd64 ucf all 3.0038 [67.8 kB] Get:10 http://mirror-ubc.debian.org/debian sid/main amd64 tex-common all 6.10 [53.0 kB] Get:11 http://mirror-ubc.debian.org/debian sid/main amd64 tzdata all 2018e-1 [252 kB] Get:12 http://mirror-ubc.debian.org/debian sid/main amd64 libncurses6 amd64 6.1+20180714-1 [102 kB] Get:13 http://mirror-ubc.debian.org/debian sid/main amd64 libprocps7 amd64 2:3.3.15-2 [61.7 kB] Get:14 http://mirror-ubc.debian.org/debian sid/main amd64 lsb-base all 9.20170808 [28.1 kB] Get:15 http://mirror-ubc.debian.org/debian sid/main amd64 procps amd64 2:3.3.15-2 [259 kB] Get:16 http://mirror-ubc.debian.org/debian sid/main amd64 readline-common all 7.0-5 [70.6 kB] Get:17 http://mirror-ubc.debian.org/debian sid/main amd64 xz-utils amd64 5.2.2-1.3 [266 kB] Get:18 http://mirror-ubc.debian.org/debian sid/main amd64 libssl1.1 amd64 1.1.1-1 [1524 kB] Get:19 http://mirror-ubc.debian.org/debian sid/main amd64 openssl amd64 1.1.1-1 [834 kB] Get:20 http://mirror-ubc.debian.org/debian sid/main amd64 ca-certificates all 20180409 [161 kB] Get:21 http://mirror-ubc.debian.org/debian sid/main amd64 java-common all 0.68 [14.3 kB] Get:22 http://mirror-ubc.debian.org/debian sid/main amd64 libavahi-common-data amd64 0.7-4 [122 kB] Get:23 http://mirror-ubc.debian.org/debian sid/main amd64 libavahi-common3 amd64 0.7-4 [54.4 kB] Get:24 http://mirror-ubc.debian.org/debian sid/main amd64 libdbus-1-3 amd64 1.12.10-1 [211 kB] Get:25 http://mirror-ubc.debian.org/debian sid/main amd64 libavahi-client3 amd64 0.7-4 [57.8 kB] Get:26 http://mirror-ubc.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.5.9-9.3 [13.0 kB] Get:27 http://mirror-ubc.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.16-2 [62.8 kB] Get:28 http://mirror-ubc.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.16-2 [121 kB] Get:29 http://mirror-ubc.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.16-2 [316 kB] Get:30 http://mirror-ubc.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.16-2 [158 kB] Get:31 http://mirror-ubc.debian.org/debian sid/main amd64 libcups2 amd64 2.2.8-5 [322 kB] Get:32 http://mirror-ubc.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.9-3 [145 kB] Get:33 http://mirror-ubc.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+b1 [134 kB] Get:34 http://mirror-ubc.debian.org/debian sid/main amd64 libexpat1 amd64 2.2.6-1 [105 kB] Get:35 http://mirror-ubc.debian.org/debian sid/main amd64 libpng16-16 amd64 1.6.34-2 [288 kB] Get:36 http://mirror-ubc.debian.org/debian sid/main amd64 libfreetype6 amd64 2.8.1-2 [461 kB] Get:37 http://mirror-ubc.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:38 http://mirror-ubc.debian.org/debian sid/main amd64 fontconfig-config all 2.13.0-5 [280 kB] Get:39 http://mirror-ubc.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.13.0-5 [343 kB] Get:40 http://mirror-ubc.debian.org/debian sid/main amd64 libnspr4 amd64 2:4.20-1 [112 kB] Get:41 http://mirror-ubc.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.25.0-1 [632 kB] Get:42 http://mirror-ubc.debian.org/debian sid/main amd64 libnss3 amd64 2:3.39-1 [1151 kB] Get:43 http://mirror-ubc.debian.org/debian sid/main amd64 libpcsclite1 amd64 1.8.23-3 [58.1 kB] Get:44 http://mirror-ubc.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:45 http://mirror-ubc.debian.org/debian sid/main amd64 libbsd0 amd64 0.9.1-1 [99.3 kB] Get:46 http://mirror-ubc.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:47 http://mirror-ubc.debian.org/debian sid/main amd64 libxcb1 amd64 1.13-3 [136 kB] Get:48 http://mirror-ubc.debian.org/debian sid/main amd64 libx11-data all 2:1.6.6-1 [298 kB] Get:49 http://mirror-ubc.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.6.6-1 [758 kB] Get:50 http://mirror-ubc.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:51 http://mirror-ubc.debian.org/debian sid/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get:52 http://mirror-ubc.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:53 http://mirror-ubc.debian.org/debian sid/main amd64 x11-common all 1:7.7+19 [251 kB] Get:54 http://mirror-ubc.debian.org/debian sid/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get:55 http://mirror-ubc.debian.org/debian sid/main amd64 openjdk-10-jre-headless amd64 10.0.2+13-1 [39.3 MB] Get:56 http://mirror-ubc.debian.org/debian sid/main amd64 default-jre-headless amd64 2:1.10-68 [10.8 kB] Get:57 http://mirror-ubc.debian.org/debian sid/main amd64 ca-certificates-java all 20180516 [15.5 kB] Get:58 http://mirror-ubc.debian.org/debian sid/main amd64 fontconfig amd64 2.13.0-5 [405 kB] Get:59 http://mirror-ubc.debian.org/debian sid/main amd64 fonts-lmodern all 2.004.5-5 [4539 kB] Get:60 http://mirror-ubc.debian.org/debian sid/main amd64 libquadmath0 amd64 8.2.0-7 [133 kB] Get:61 http://mirror-ubc.debian.org/debian sid/main amd64 libgfortran5 amd64 8.2.0-7 [581 kB] Get:62 http://mirror-ubc.debian.org/debian sid/main amd64 libaec0 amd64 1.0.2-1 [20.1 kB] Get:63 http://mirror-ubc.debian.org/debian sid/main amd64 libsz2 amd64 1.0.2-1 [6676 B] Get:64 http://mirror-ubc.debian.org/debian sid/main amd64 libhdf5-100 amd64 1.10.0-patch1+docs-4+b2 [1266 kB] Get:65 http://mirror-ubc.debian.org/debian sid/main amd64 hdf5-tools amd64 1.10.0-patch1+docs-4+b2 [404 kB] Get:66 http://mirror-ubc.debian.org/debian sid/main amd64 libsensors4 amd64 1:3.4.0-4 [53.3 kB] Get:67 http://mirror-ubc.debian.org/debian sid/main amd64 sysstat amd64 12.0.1-1 [561 kB] Get:68 http://mirror-ubc.debian.org/debian sid/main amd64 parallel all 20161222-1 [307 kB] Get:69 http://mirror-ubc.debian.org/debian sid/main amd64 last-align amd64 938-1 [772 kB] Get:70 http://mirror-ubc.debian.org/debian sid/main amd64 libapache-pom-java all 18-1 [4676 B] Get:71 http://mirror-ubc.debian.org/debian sid/main amd64 libblas3 amd64 3.8.0-1+b1 [148 kB] Get:72 http://mirror-ubc.debian.org/debian sid/main amd64 libbrotli1 amd64 1.0.5-2 [275 kB] Get:73 http://mirror-ubc.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.34.0-2 [529 kB] Get:74 http://mirror-ubc.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.13-3 [108 kB] Get:75 http://mirror-ubc.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.13-3 [98.4 kB] Get:76 http://mirror-ubc.debian.org/debian sid/main amd64 libcairo2 amd64 1.15.12-1 [677 kB] Get:77 http://mirror-ubc.debian.org/debian sid/main amd64 libcommons-parent-java all 43-1 [10.8 kB] Get:78 http://mirror-ubc.debian.org/debian sid/main amd64 libcommons-io-java all 2.6-2 [213 kB] Get:79 http://mirror-ubc.debian.org/debian sid/main amd64 libcupsimage2 amd64 2.2.8-5 [131 kB] Get:80 http://mirror-ubc.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3.1 [68.6 kB] Get:81 http://mirror-ubc.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3.1 [105 kB] Get:82 http://mirror-ubc.debian.org/debian sid/main amd64 libldap-common all 2.4.46+dfsg-5 [88.3 kB] Get:83 http://mirror-ubc.debian.org/debian sid/main amd64 libldap-2.4-2 amd64 2.4.46+dfsg-5 [223 kB] Get:84 http://mirror-ubc.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.33.0-1 [84.9 kB] Get:85 http://mirror-ubc.debian.org/debian sid/main amd64 libpsl5 amd64 0.20.2-1 [53.7 kB] Get:86 http://mirror-ubc.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get:87 http://mirror-ubc.debian.org/debian sid/main amd64 libssh2-1 amd64 1.8.0-2 [138 kB] Get:88 http://mirror-ubc.debian.org/debian sid/main amd64 libcurl4 amd64 7.61.0-1 [318 kB] Get:89 http://mirror-ubc.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.12-1 [39.1 kB] Get:90 http://mirror-ubc.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.5-3 [63.3 kB] Get:91 http://mirror-ubc.debian.org/debian sid/main amd64 libglib2.0-0 amd64 2.58.0-4 [1222 kB] Get:92 http://mirror-ubc.debian.org/debian sid/main amd64 libgomp1 amd64 8.2.0-7 [75.6 kB] Get:93 http://mirror-ubc.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.12-1 [80.2 kB] Get:94 http://mirror-ubc.debian.org/debian sid/main amd64 libgs9-common all 9.25~dfsg-2 [5132 kB] Get:95 http://mirror-ubc.debian.org/debian sid/main amd64 libidn11 amd64 1.33-2.2 [116 kB] Get:96 http://mirror-ubc.debian.org/debian sid/main amd64 libijs-0.35 amd64 0.35-13 [18.5 kB] Get:97 http://mirror-ubc.debian.org/debian sid/main amd64 libjbig2dec0 amd64 0.15-1 [64.5 kB] Get:98 http://mirror-ubc.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.3.0-1 [163 kB] Get:99 http://mirror-ubc.debian.org/debian sid/main amd64 libpaper1 amd64 1.1.24+nmu5 [21.6 kB] Get:100 http://mirror-ubc.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:101 http://mirror-ubc.debian.org/debian sid/main amd64 libtiff5 amd64 4.0.9-6 [246 kB] Get:102 http://mirror-ubc.debian.org/debian sid/main amd64 libgs9 amd64 9.25~dfsg-2 [2188 kB] Get:103 http://mirror-ubc.debian.org/debian sid/main amd64 libharfbuzz0b amd64 1.8.8-2 [902 kB] Get:104 http://mirror-ubc.debian.org/debian sid/main amd64 libicu-le-hb0 amd64 1.0.3+git161113-5 [14.6 kB] Get:105 http://mirror-ubc.debian.org/debian sid/main amd64 libicu60 amd64 60.2-6 [8073 kB] Get:106 http://mirror-ubc.debian.org/debian sid/main amd64 libharfbuzz-icu0 amd64 1.8.8-2 [641 kB] Get:107 http://mirror-ubc.debian.org/debian sid/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:108 http://mirror-ubc.debian.org/debian sid/main amd64 libkpathsea6 amd64 2018.20180907.48586-1 [166 kB] Get:109 http://mirror-ubc.debian.org/debian sid/main amd64 liblapack3 amd64 3.8.0-1+b1 [2112 kB] Get:110 http://mirror-ubc.debian.org/debian sid/main amd64 libmpfr6 amd64 4.0.1-1 [764 kB] Get:111 http://mirror-ubc.debian.org/debian sid/main amd64 libthai-data all 0.1.28-1 [170 kB] Get:112 http://mirror-ubc.debian.org/debian sid/main amd64 libthai0 amd64 0.1.28-1 [53.9 kB] Get:113 http://mirror-ubc.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.42.4-3 [184 kB] Get:114 http://mirror-ubc.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.42.4-3 [67.5 kB] Get:115 http://mirror-ubc.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.42.4-3 [55.4 kB] Get:116 http://mirror-ubc.debian.org/debian sid/main amd64 libpaper-utils amd64 1.1.24+nmu5 [17.6 kB] Get:117 http://mirror-ubc.debian.org/debian sid/main amd64 libpotrace0 amd64 1.15-1 [26.3 kB] Get:118 http://mirror-ubc.debian.org/debian sid/main amd64 libptexenc1 amd64 2018.20180907.48586-1 [60.9 kB] Get:119 http://mirror-ubc.debian.org/debian sid/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:120 http://mirror-ubc.debian.org/debian sid/main amd64 libsm6 amd64 2:1.2.2-1+b3 [33.3 kB] Get:121 http://mirror-ubc.debian.org/debian sid/main amd64 libsynctex2 amd64 2018.20180907.48586-1 [80.3 kB] Get:122 http://mirror-ubc.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.8+dfsg-4 [988 kB] Get:123 http://mirror-ubc.debian.org/debian sid/main amd64 libtexlua52 amd64 2018.20180907.48586-1 [112 kB] Get:124 http://mirror-ubc.debian.org/debian sid/main amd64 libtexlua53 amd64 2018.20180907.48586-1 [125 kB] Get:125 http://mirror-ubc.debian.org/debian sid/main amd64 libtexluajit2 amd64 2018.20180907.48586-1 [256 kB] Get:126 http://mirror-ubc.debian.org/debian sid/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:127 http://mirror-ubc.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:128 http://mirror-ubc.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.8-4 [752 kB] Get:129 http://mirror-ubc.debian.org/debian sid/main amd64 libwoff1 amd64 1.0.2-1 [43.2 kB] Get:130 http://mirror-ubc.debian.org/debian sid/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] Get:131 http://mirror-ubc.debian.org/debian sid/main amd64 libxmu6 amd64 2:1.1.2-2 [60.3 kB] Get:132 http://mirror-ubc.debian.org/debian sid/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:133 http://mirror-ubc.debian.org/debian sid/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:134 http://mirror-ubc.debian.org/debian sid/main amd64 libxxhash0 amd64 0.6.5-1 [6880 B] Get:135 http://mirror-ubc.debian.org/debian sid/main amd64 libzzip-0-13 amd64 0.13.62-3.1 [55.4 kB] Get:136 http://mirror-ubc.debian.org/debian sid/main amd64 zip amd64 3.0-11+b1 [234 kB] Get:137 http://mirror-ubc.debian.org/debian sid/main amd64 unzip amd64 6.0-21 [170 kB] Get:138 http://mirror-ubc.debian.org/debian sid/main amd64 xdg-utils all 1.1.3-1 [73.3 kB] Get:139 http://mirror-ubc.debian.org/debian sid/main amd64 r-base-core amd64 3.5.1-1+b1 [23.9 MB] Get:140 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-littler amd64 0.3.4-1 [342 kB] Get:141 http://mirror-ubc.debian.org/debian sid/main amd64 littler all 0.3.4-1 [13.2 kB] Get:142 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-assertthat all 0.2.0-2 [54.4 kB] Get:143 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-crayon all 1.3.4-4 [750 kB] Get:144 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-cli all 1.0.0-2 [318 kB] Get:145 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-colorspace amd64 1.3-2-3 [474 kB] Get:146 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-digest amd64 0.6.17-1 [135 kB] Get:147 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-fansi amd64 0.3.0-1 [299 kB] Get:148 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-gtable all 0.2.0-3 [93.6 kB] Get:149 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-lazyeval amd64 0.2.1-3 [138 kB] Get:150 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-mass amd64 7.3-50-1+b1 [1104 kB] Get:151 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-lattice amd64 0.20-35-1+b2 [1137 kB] Get:152 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-nlme amd64 3.1.137-1+b3 [2223 kB] Get:153 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-matrix amd64 1.2-14-1+b3 [3398 kB] Get:154 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-mgcv amd64 1.8-24-1+b1 [2564 kB] Get:155 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-pkgkitten all 0.1.4-2 [22.4 kB] Get:156 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-rcpp amd64 0.12.18-1 [3459 kB] Get:157 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-plyr amd64 1.8.4-2 [813 kB] Get:158 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-glue amd64 1.3.0-1 [92.0 kB] Get:159 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-magrittr all 1.5-5 [152 kB] Get:160 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-stringi amd64 1.2.4-1 [680 kB] Get:161 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-stringr all 1.3.1-2 [179 kB] Get:162 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-reshape2 amd64 1.4.3-2 [114 kB] Get:163 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-rlang amd64 0.2.2-1 [813 kB] Get:164 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-labeling all 0.3-3 [61.4 kB] Get:165 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-munsell all 0.5.0-1 [235 kB] Get:166 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-r6 all 2.2.2-3 [257 kB] Get:167 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-rcolorbrewer all 1.1-2-2 [54.3 kB] Get:168 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-viridislite all 0.3.0-3 [59.2 kB] Get:169 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-scales amd64 1.0.0-2 [546 kB] Get:170 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-utf8 amd64 1.1.4-1+b1 [131 kB] Get:171 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-pillar all 1.3.0-1 [200 kB] Get:172 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-tibble amd64 1.4.2-3 [232 kB] Get:173 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-withr all 2.1.2-3 [152 kB] Get:174 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-ggplot2 all 3.0.0-1 [3697 kB] Get:175 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-gridextra all 2.3-2 [1023 kB] Get:176 http://mirror-ubc.debian.org/debian sid/main amd64 r-cran-reshape all 0.8.7-2 [167 kB] Get:177 http://mirror-ubc.debian.org/debian sid/main amd64 t1utils amd64 1.41-2 [62.0 kB] Get:178 http://mirror-ubc.debian.org/debian sid/main amd64 texlive-binaries amd64 2018.20180907.48586-1 [11.7 MB] Get:179 http://mirror-ubc.debian.org/debian sid/main amd64 texlive-base all 2018.20180824-1 [18.9 MB] Get:180 http://mirror-ubc.debian.org/debian sid/main amd64 texlive-latex-base all 2018.20180824-1 [982 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 180 MB in 7s (27.3 MB/s) Selecting previously unselected package perl-modules-5.26. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4465 files and directories currently installed.) Preparing to unpack .../000-perl-modules-5.26_5.26.2-7_all.deb ... Unpacking perl-modules-5.26 (5.26.2-7) ... Selecting previously unselected package libgdbm5:amd64. Preparing to unpack .../001-libgdbm5_1.14.1-6+b1_amd64.deb ... Unpacking libgdbm5:amd64 (1.14.1-6+b1) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../002-libgdbm-compat4_1.14.1-6+b1_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.14.1-6+b1) ... Selecting previously unselected package libperl5.26:amd64. Preparing to unpack .../003-libperl5.26_5.26.2-7_amd64.deb ... Unpacking libperl5.26:amd64 (5.26.2-7) ... Selecting previously unselected package perl. Preparing to unpack .../004-perl_5.26.2-7_amd64.deb ... Unpacking perl (5.26.2-7) ... Selecting previously unselected package poppler-data. Preparing to unpack .../005-poppler-data_0.4.9-2_all.deb ... Unpacking poppler-data (0.4.9-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../006-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package ucf. Preparing to unpack .../007-ucf_3.0038_all.deb ... Moving old data out of the way Unpacking ucf (3.0038) ... Selecting previously unselected package tex-common. Preparing to unpack .../008-tex-common_6.10_all.deb ... Unpacking tex-common (6.10) ... Selecting previously unselected package tzdata. Preparing to unpack .../009-tzdata_2018e-1_all.deb ... Unpacking tzdata (2018e-1) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../010-libncurses6_6.1+20180714-1_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20180714-1) ... Selecting previously unselected package libprocps7:amd64. Preparing to unpack .../011-libprocps7_2%3a3.3.15-2_amd64.deb ... Unpacking libprocps7:amd64 (2:3.3.15-2) ... Selecting previously unselected package lsb-base. Preparing to unpack .../012-lsb-base_9.20170808_all.deb ... Unpacking lsb-base (9.20170808) ... Selecting previously unselected package procps. Preparing to unpack .../013-procps_2%3a3.3.15-2_amd64.deb ... Unpacking procps (2:3.3.15-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../014-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package xz-utils. Preparing to unpack .../015-xz-utils_5.2.2-1.3_amd64.deb ... Unpacking xz-utils (5.2.2-1.3) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../016-libssl1.1_1.1.1-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1-1) ... Selecting previously unselected package openssl. Preparing to unpack .../017-openssl_1.1.1-1_amd64.deb ... Unpacking openssl (1.1.1-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../018-ca-certificates_20180409_all.deb ... Unpacking ca-certificates (20180409) ... Selecting previously unselected package java-common. Preparing to unpack .../019-java-common_0.68_all.deb ... Unpacking java-common (0.68) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../020-libavahi-common-data_0.7-4_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.7-4) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../021-libavahi-common3_0.7-4_amd64.deb ... Unpacking libavahi-common3:amd64 (0.7-4) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../022-libdbus-1-3_1.12.10-1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.12.10-1) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../023-libavahi-client3_0.7-4_amd64.deb ... Unpacking libavahi-client3:amd64 (0.7-4) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../024-libkeyutils1_1.5.9-9.3_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.9-9.3) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../025-libkrb5support0_1.16-2_amd64.deb ... Unpacking libkrb5support0:amd64 (1.16-2) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../026-libk5crypto3_1.16-2_amd64.deb ... Unpacking libk5crypto3:amd64 (1.16-2) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../027-libkrb5-3_1.16-2_amd64.deb ... Unpacking libkrb5-3:amd64 (1.16-2) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../028-libgssapi-krb5-2_1.16-2_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.16-2) ... Selecting previously unselected package libcups2:amd64. Preparing to unpack .../029-libcups2_2.2.8-5_amd64.deb ... Unpacking libcups2:amd64 (2.2.8-5) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../030-liblcms2-2_2.9-3_amd64.deb ... Unpacking liblcms2-2:amd64 (2.9-3) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../031-libjpeg62-turbo_1%3a1.5.2-2+b1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.5.2-2+b1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../032-libexpat1_2.2.6-1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.6-1) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../033-libpng16-16_1.6.34-2_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.34-2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../034-libfreetype6_2.8.1-2_amd64.deb ... Unpacking libfreetype6:amd64 (2.8.1-2) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../035-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../036-fontconfig-config_2.13.0-5_all.deb ... Unpacking fontconfig-config (2.13.0-5) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../037-libfontconfig1_2.13.0-5_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.0-5) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../038-libnspr4_2%3a4.20-1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.20-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../039-libsqlite3-0_3.25.0-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.25.0-1) ... Selecting previously unselected package libnss3:amd64. Preparing to unpack .../040-libnss3_2%3a3.39-1_amd64.deb ... Unpacking libnss3:amd64 (2:3.39-1) ... Selecting previously unselected package libpcsclite1:amd64. Preparing to unpack .../041-libpcsclite1_1.8.23-3_amd64.deb ... Unpacking libpcsclite1:amd64 (1.8.23-3) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../042-libxau6_1%3a1.0.8-1+b2_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1+b2) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../043-libbsd0_0.9.1-1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../044-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../045-libxcb1_1.13-3_amd64.deb ... Unpacking libxcb1:amd64 (1.13-3) ... Selecting previously unselected package libx11-data. Preparing to unpack .../046-libx11-data_2%3a1.6.6-1_all.deb ... Unpacking libx11-data (2:1.6.6-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../047-libx11-6_2%3a1.6.6-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.6-1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../048-libxext6_2%3a1.3.3-1+b2_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.3-1+b2) ... Selecting previously unselected package libxi6:amd64. Preparing to unpack .../049-libxi6_2%3a1.7.9-1_amd64.deb ... Unpacking libxi6:amd64 (2:1.7.9-1) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../050-libxrender1_1%3a0.9.10-1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../051-x11-common_1%3a7.7+19_all.deb ... Unpacking x11-common (1:7.7+19) ... Selecting previously unselected package libxtst6:amd64. Preparing to unpack .../052-libxtst6_2%3a1.2.3-1_amd64.deb ... Unpacking libxtst6:amd64 (2:1.2.3-1) ... Selecting previously unselected package openjdk-10-jre-headless:amd64. Preparing to unpack .../053-openjdk-10-jre-headless_10.0.2+13-1_amd64.deb ... Unpacking openjdk-10-jre-headless:amd64 (10.0.2+13-1) ... Selecting previously unselected package default-jre-headless. Preparing to unpack .../054-default-jre-headless_2%3a1.10-68_amd64.deb ... Unpacking default-jre-headless (2:1.10-68) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../055-ca-certificates-java_20180516_all.deb ... Unpacking ca-certificates-java (20180516) ... Selecting previously unselected package fontconfig. Preparing to unpack .../056-fontconfig_2.13.0-5_amd64.deb ... Unpacking fontconfig (2.13.0-5) ... Selecting previously unselected package fonts-lmodern. Preparing to unpack .../057-fonts-lmodern_2.004.5-5_all.deb ... Unpacking fonts-lmodern (2.004.5-5) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../058-libquadmath0_8.2.0-7_amd64.deb ... Unpacking libquadmath0:amd64 (8.2.0-7) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../059-libgfortran5_8.2.0-7_amd64.deb ... Unpacking libgfortran5:amd64 (8.2.0-7) ... Selecting previously unselected package libaec0:amd64. Preparing to unpack .../060-libaec0_1.0.2-1_amd64.deb ... Unpacking libaec0:amd64 (1.0.2-1) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../061-libsz2_1.0.2-1_amd64.deb ... Unpacking libsz2:amd64 (1.0.2-1) ... Selecting previously unselected package libhdf5-100:amd64. Preparing to unpack .../062-libhdf5-100_1.10.0-patch1+docs-4+b2_amd64.deb ... 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Setting up libquadmath0:amd64 (8.2.0-7) ... Setting up libgs9-common (9.25~dfsg-2) ... Setting up libbrotli1:amd64 (1.0.5-2) ... Setting up libgomp1:amd64 (8.2.0-7) ... Setting up libkpathsea6:amd64 (2018.20180907.48586-1) ... Setting up libtexlua52:amd64 (2018.20180907.48586-1) ... Setting up readline-common (7.0-5) ... Setting up libaec0:amd64 (1.0.2-1) ... Setting up libexpat1:amd64 (2.2.6-1) ... Setting up libopenjp2-7:amd64 (2.3.0-1) ... Setting up libptexenc1:amd64 (2018.20180907.48586-1) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+b1) ... Setting up libnghttp2-14:amd64 (1.33.0-1) ... Setting up libprocps7:amd64 (2:3.3.15-2) ... Setting up libwoff1:amd64 (1.0.2-1) ... Setting up libpng16-16:amd64 (1.6.34-2) ... Setting up liblcms2-2:amd64 (2.9-3) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libpcsclite1:amd64 (1.8.23-3) ... Setting up libldap-common (2.4.46+dfsg-5) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up poppler-data (0.4.9-2) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libpsl5:amd64 (0.20.2-1) ... Setting up tzdata (2018e-1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Sep 20 03:16:41 UTC 2018. Universal Time is now: Thu Sep 20 03:16:41 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libglib2.0-0:amd64 (2.58.0-4) ... No schema files found: doing nothing. Setting up libtexlua53:amd64 (2018.20180907.48586-1) ... Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3.1) ... Setting up unzip (6.0-21) ... Setting up libmpfr6:amd64 (4.0.1-1) ... Setting up java-common (0.68) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3.1) ... Setting up libdatrie1:amd64 (0.2.12-1) ... Setting up libtiff5:amd64 (4.0.9-6) ... Setting up libsynctex2:amd64 (2018.20180907.48586-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up perl-modules-5.26 (5.26.2-7) ... Setting up libgdbm5:amd64 (1.14.1-6+b1) ... Setting up libxxhash0:amd64 (0.6.5-1) ... Setting up libbsd0:amd64 (0.9.1-1) ... Setting up libnspr4:amd64 (2:4.20-1) ... Setting up zip (3.0-11+b1) ... Setting up libfreetype6:amd64 (2.8.1-2) ... Setting up lsb-base (9.20170808) ... Setting up libgraphite2-3:amd64 (1.3.12-1) ... Setting up libjbig2dec0:amd64 (0.15-1) ... Setting up sensible-utils (0.0.12) ... Setting up libpixman-1-0:amd64 (0.34.0-2) ... Setting up libssh2-1:amd64 (1.8.0-2) ... Processing triggers for libc-bin (2.27-6) ... Setting up libldap-2.4-2:amd64 (2.4.46+dfsg-5) ... Setting up t1utils (1.41-2) ... Setting up libssl1.1:amd64 (1.1.1-1) ... Setting up xz-utils (5.2.2-1.3) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up libapache-pom-java (18-1) ... Setting up openssl (1.1.1-1) ... Setting up libijs-0.35:amd64 (0.35-13) ... Setting up libsqlite3-0:amd64 (3.25.0-1) ... Setting up libfribidi0:amd64 (1.0.5-3) ... Setting up libpotrace0:amd64 (1.15-1) ... Setting up libsensors4:amd64 (1:3.4.0-4) ... Setting up libtcl8.6:amd64 (8.6.8+dfsg-4) ... Setting up libthai-data (0.1.28-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libgdbm-compat4:amd64 (1.14.1-6+b1) ... Setting up libkeyutils1:amd64 (1.5.9-9.3) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libzzip-0-13:amd64 (0.13.62-3.1) ... Setting up xdg-utils (1.1.3-1) ... Setting up ca-certificates (20180409) ... Updating certificates in /etc/ssl/certs... 133 added, 0 removed; done. Setting up libgfortran5:amd64 (8.2.0-7) ... Setting up libncurses6:amd64 (6.1+20180714-1) ... Setting up libtexluajit2:amd64 (2018.20180907.48586-1) ... Setting up libx11-data (2:1.6.6-1) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up libidn11:amd64 (1.33-2.2) ... Setting up libdbus-1-3:amd64 (1.12.10-1) ... Setting up fonts-lmodern (2.004.5-5) ... Setting up libavahi-common-data:amd64 (0.7-4) ... Setting up libsz2:amd64 (1.0.2-1) ... Setting up libhdf5-100:amd64 (1.10.0-patch1+docs-4+b2) ... Setting up libnss3:amd64 (2:3.39-1) ... Setting up libharfbuzz0b:amd64 (1.8.8-2) ... Setting up libthai0:amd64 (0.1.28-1) ... Setting up libkrb5support0:amd64 (1.16-2) ... Setting up ucf (3.0038) ... Setting up hdf5-tools (1.10.0-patch1+docs-4+b2) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libcommons-parent-java (43-1) ... Setting up libblas3:amd64 (3.8.0-1+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libperl5.26:amd64 (5.26.2-7) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libavahi-common3:amd64 (0.7-4) ... Setting up libxcb1:amd64 (1.13-3) ... Setting up libpaper1:amd64 (1.1.24+nmu5) ... Creating config file /etc/papersize with new version Setting up libsm6:amd64 (2:1.2.2-1+b3) ... Setting up libk5crypto3:amd64 (1.16-2) ... Setting up libcommons-io-java (2.6-2) ... Setting up libpaper-utils (1.1.24+nmu5) ... Setting up fontconfig-config (2.13.0-5) ... Setting up libxcb-render0:amd64 (1.13-3) ... Setting up sysstat (12.0.1-1) ... Creating config file /etc/default/sysstat with new version update-alternatives: using /usr/bin/sar.sysstat to provide /usr/bin/sar (sar) in auto mode Setting up tex-common (6.10) ... update-language: texlive-base not installed and configured, doing nothing! Setting up liblapack3:amd64 (3.8.0-1+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libx11-6:amd64 (2:1.6.6-1) ... Setting up perl (5.26.2-7) ... Setting up libxcb-shm0:amd64 (1.13-3) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libavahi-client3:amd64 (0.7-4) ... Setting up libkrb5-3:amd64 (1.16-2) ... Setting up libfontconfig1:amd64 (2.13.0-5) ... Setting up parallel (20161222-1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libxmu6:amd64 (2:1.1.2-2) ... Setting up libgssapi-krb5-2:amd64 (1.16-2) ... Setting up last-align (938-1) ... Setting up libxft2:amd64 (2.3.2-2) ... Setting up fontconfig (2.13.0-5) ... Regenerating fonts cache... done. Setting up libcups2:amd64 (2.2.8-5) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up libcairo2:amd64 (1.15.12-1) ... Setting up libtk8.6:amd64 (8.6.8-4) ... Setting up libcurl4:amd64 (7.61.0-1) ... Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up libcupsimage2:amd64 (2.2.8-5) ... Setting up libpango-1.0-0:amd64 (1.42.4-3) ... Setting up libgs9:amd64 (9.25~dfsg-2) ... Setting up libpangoft2-1.0-0:amd64 (1.42.4-3) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-3) ... Setting up default-jre-headless (2:1.10-68) ... Setting up openjdk-10-jre-headless:amd64 (10.0.2+13-1) ... update-alternatives: using /usr/lib/jvm/java-10-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-10-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-10-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-10-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-10-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-10-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-10-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-10-openjdk-amd64/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode update-alternatives: using /usr/lib/jvm/java-10-openjdk-amd64/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode update-alternatives: using /usr/lib/jvm/java-10-openjdk-amd64/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode update-alternatives: using /usr/lib/jvm/java-10-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up ca-certificates-java (20180516) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:Visa_eCommerce_Root.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:TÜRKTRUST_Elektronik_Sertifika_Hizmet_Sağlayıcısı_H5.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Taiwan_GRCA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:OpenTrust_Root_CA_G3.pem Adding debian:OpenTrust_Root_CA_G2.pem Adding debian:OpenTrust_Root_CA_G1.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:LuxTrust_Global_Root_2.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:Deutsche_Telekom_Root_CA_2.pem Adding debian:DST_Root_CA_X3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certplus_Root_CA_G2.pem Adding debian:Certplus_Root_CA_G1.pem Adding debian:Certplus_Class_2_Primary_CA.pem Adding debian:Certinomis_-_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AddTrust_External_Root.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Setting up libicu-le-hb0:amd64 (1.0.3+git161113-5) ... Setting up libicu60:amd64 (60.2-6) ... Setting up libharfbuzz-icu0:amd64 (1.8.8-2) ... Setting up r-base-core (3.5.1-1+b1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-withr (2.1.2-3) ... Setting up r-cran-littler (0.3.4-1) ... Setting up littler (0.3.4-1) ... Setting up r-cran-fansi (0.3.0-1) ... Setting up r-cran-crayon (1.3.4-4) ... Setting up r-cran-gtable (0.2.0-3) ... Setting up texlive-binaries (2018.20180907.48586-1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up r-cran-assertthat (0.2.0-2) ... Setting up r-cran-rcolorbrewer (1.1-2-2) ... Setting up r-cran-gridextra (2.3-2) ... Setting up r-cran-stringi (1.2.4-1) ... Setting up r-cran-pkgkitten (0.1.4-2) ... Setting up r-cran-rcpp (0.12.18-1) ... Setting up r-cran-labeling (0.3-3) ... Setting up texlive-base (2018.20180824-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex Setting up r-cran-r6 (2.2.2-3) ... Setting up r-cran-colorspace (1.3-2-3) ... Setting up r-cran-utf8 (1.1.4-1+b1) ... Setting up r-cran-mass (7.3-50-1+b1) ... Setting up r-cran-plyr (1.8.4-2) ... Setting up r-cran-rlang (0.2.2-1) ... Setting up r-cran-digest (0.6.17-1) ... Setting up texlive-latex-base (2018.20180824-1) ... Setting up r-cran-cli (1.0.0-2) ... Setting up r-cran-magrittr (1.5-5) ... Setting up r-cran-glue (1.3.0-1) ... Setting up r-cran-viridislite (0.3.0-3) ... Setting up r-cran-lattice (0.20-35-1+b2) ... Setting up r-cran-lazyeval (0.2.1-3) ... Setting up r-cran-nlme (3.1.137-1+b3) ... Setting up r-cran-stringr (1.3.1-2) ... Setting up r-cran-reshape (0.8.7-2) ... Setting up r-cran-munsell (0.5.0-1) ... Setting up r-cran-pillar (1.3.0-1) ... Setting up r-cran-reshape2 (1.4.3-2) ... Setting up r-cran-scales (1.0.0-2) ... Setting up r-cran-tibble (1.4.2-3) ... Setting up r-cran-matrix (1.2-14-1+b3) ... Setting up r-cran-mgcv (1.8-24-1+b1) ... Setting up r-cran-ggplot2 (3.0.0-1) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-6) ... Processing triggers for ca-certificates (20180409) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Processing triggers for tex-common (6.10) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. 1m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'apt-get', '-y', '--allow-downgrades', 'install', './tmp/piuparts-depends-dummy.deb'] 1m3.8s INFO: Installation of ['./tmp/piuparts-depends-dummy.deb'] ok 1m3.8s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmp1H2D7V/./tmp/piuparts-depends-dummy.deb 1m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 1m3.8s DUMP: piuparts-depends-dummy install ok installed 1m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 1m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'dpkg', '--purge', 'piuparts-depends-dummy'] 1m3.9s DUMP: (Reading database ... 20822 files and directories currently installed.) Removing piuparts-depends-dummy (0.invalid.0) ... 1m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'dpkg', '--purge', 'piuparts-depends-dummy'] 1m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'apt-get', 'clean'] 1m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'apt-get', 'clean'] 1m3.9s DEBUG: Recording chroot state 1m4.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1H2D7V'] 1m6.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1H2D7V'] 1m7.8s ERROR: WARN: Broken symlinks: /usr/share/ghostscript/9.25/Resource/CIDFSubst/DroidSansFallback.ttf -> ../../../../fonts/truetype/droid/DroidSansFallbackFull.ttf /usr/lib/debug/usr/lib/jvm/java-1.10.0-openjdk-amd64 -> java-10-openjdk-amd64 1m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'apt-cache', 'policy'] 1m9.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin mirror-ubc.debian.org Pinned packages: 1m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'apt-cache', 'policy'] 1m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'apt-cache', 'policy', 'nanook'] 1m9.0s DUMP: nanook: Installed: (none) Candidate: 1.33+dfsg-1 Version table: 1.33+dfsg-1 500 500 http://mirror-ubc.debian.org/debian sid/main amd64 Packages 1m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'apt-cache', 'policy', 'nanook'] 1m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'apt-get', '-y', 'install', 'nanook=1.33+dfsg-1'] 1m10.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Suggested packages: default-jre Recommended packages: blasr bwa The following NEW packages will be installed: nanook 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 192 kB of archives. After this operation, 290 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian sid/main amd64 nanook all 1.33+dfsg-1 [192 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 192 kB in 2s (78.8 kB/s) Selecting previously unselected package nanook. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20822 files and directories currently installed.) Preparing to unpack .../nanook_1.33+dfsg-1_all.deb ... Unpacking nanook (1.33+dfsg-1) ... Setting up nanook (1.33+dfsg-1) ... 1m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'apt-get', '-y', 'install', 'nanook=1.33+dfsg-1'] 1m10.1s INFO: Running scripts post_install 1m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/post_install_exceptions'] 1m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/post_install_exceptions'] 1m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/post_install_log_alternatives'] 1m10.1s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=xz-utils: piuparts=nanook=1.33+dfsg-1: /usr/bin/update-alternatives --install /usr/bin/lzma lzma /usr/bin/xz 20 --slave /usr/share/man/man1/lzma.1.gz lzma.1.gz /usr/share/man/man1/xz.1.gz --slave /usr/bin/unlzma unlzma /usr/bin/unxz --slave /usr/share/man/man1/unlzma.1.gz unlzma.1.gz /usr/share/man/man1/unxz.1.gz --slave /usr/bin/lzcat lzcat /usr/bin/xzcat --slave /usr/share/man/man1/lzcat.1.gz lzcat.1.gz /usr/share/man/man1/xzcat.1.gz --slave /usr/bin/lzmore lzmore /usr/bin/xzmore --slave /usr/share/man/man1/lzmore.1.gz lzmore.1.gz /usr/share/man/man1/xzmore.1.gz --slave /usr/bin/lzless lzless /usr/bin/xzless --slave /usr/share/man/man1/lzless.1.gz lzless.1.gz /usr/share/man/man1/xzless.1.gz --slave /usr/bin/lzdiff lzdiff /usr/bin/xzdiff --slave /usr/share/man/man1/lzdiff.1.gz lzdiff.1.gz /usr/share/man/man1/xzdiff.1.gz --slave /usr/bin/lzcmp lzcmp /usr/bin/xzcmp --slave /usr/share/man/man1/lzcmp.1.gz lzcmp.1.gz /usr/share/man/man1/xzcmp.1.gz --slave /usr/bin/lzgrep lzgrep /usr/bin/xzgrep --slave /usr/share/man/man1/lzgrep.1.gz lzgrep.1.gz /usr/share/man/man1/xzgrep.1.gz --slave /usr/bin/lzegrep lzegrep /usr/bin/xzegrep --slave /usr/share/man/man1/lzegrep.1.gz lzegrep.1.gz /usr/share/man/man1/xzegrep.1.gz --slave /usr/bin/lzfgrep lzfgrep /usr/bin/xzfgrep --slave /usr/share/man/man1/lzfgrep.1.gz lzfgrep.1.gz /usr/share/man/man1/xzfgrep.1.gz LOG-ALTERNATIVES: dpkg=procps: piuparts=nanook=1.33+dfsg-1: /usr/bin/update-alternatives --install /usr/bin/w w /usr/bin/w.procps 50 --slave /usr/share/man/man1/w.1.gz w.1.gz /usr/share/man/man1/w.procps.1.gz LOG-ALTERNATIVES: dpkg=libblas3: piuparts=nanook=1.33+dfsg-1: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so.3 libblas.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 10 LOG-ALTERNATIVES: dpkg=sysstat: piuparts=nanook=1.33+dfsg-1: /usr/bin/update-alternatives --display sar LOG-ALTERNATIVES: dpkg=sysstat: piuparts=nanook=1.33+dfsg-1: /usr/bin/update-alternatives --install /usr/bin/sar sar /usr/bin/sar.sysstat 0 --slave /usr/share/man/man1/sar.1.gz sar.1.gz /usr/share/man/man1/sar.sysstat.1.gz LOG-ALTERNATIVES: dpkg=liblapack3: piuparts=nanook=1.33+dfsg-1: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so.3 liblapack.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 10 LOG-ALTERNATIVES: dpkg=perl: piuparts=nanook=1.33+dfsg-1: /usr/bin/update-alternatives --remove rename /usr/bin/prename LOG-ALTERNATIVES: dpkg=openjdk-10-jre-headless: piuparts=nanook=1.33+dfsg-1: /usr/bin/update-alternatives --install /usr/bin/rmid rmid /usr/lib/jvm/java-10-openjdk-amd64/bin/rmid 1101 --slave /usr/share/man/man1/rmid.1.gz rmid.1.gz /usr/lib/jvm/java-10-openjdk-amd64/man/man1/rmid.1.gz LOG-ALTERNATIVES: dpkg=openjdk-10-jre-headless: piuparts=nanook=1.33+dfsg-1: /usr/bin/update-alternatives --install /usr/bin/java java /usr/lib/jvm/java-10-openjdk-amd64/bin/java 1101 --slave /usr/share/man/man1/java.1.gz java.1.gz /usr/lib/jvm/java-10-openjdk-amd64/man/man1/java.1.gz LOG-ALTERNATIVES: dpkg=openjdk-10-jre-headless: piuparts=nanook=1.33+dfsg-1: /usr/bin/update-alternatives --install /usr/bin/keytool keytool /usr/lib/jvm/java-10-openjdk-amd64/bin/keytool 1101 --slave /usr/share/man/man1/keytool.1.gz keytool.1.gz /usr/lib/jvm/java-10-openjdk-amd64/man/man1/keytool.1.gz LOG-ALTERNATIVES: dpkg=openjdk-10-jre-headless: piuparts=nanook=1.33+dfsg-1: /usr/bin/update-alternatives --install /usr/bin/jjs jjs /usr/lib/jvm/java-10-openjdk-amd64/bin/jjs 1101 --slave /usr/share/man/man1/jjs.1.gz jjs.1.gz /usr/lib/jvm/java-10-openjdk-amd64/man/man1/jjs.1.gz LOG-ALTERNATIVES: dpkg=openjdk-10-jre-headless: piuparts=nanook=1.33+dfsg-1: /usr/bin/update-alternatives --install /usr/bin/pack200 pack200 /usr/lib/jvm/java-10-openjdk-amd64/bin/pack200 1101 --slave /usr/share/man/man1/pack200.1.gz pack200.1.gz /usr/lib/jvm/java-10-openjdk-amd64/man/man1/pack200.1.gz LOG-ALTERNATIVES: dpkg=openjdk-10-jre-headless: piuparts=nanook=1.33+dfsg-1: /usr/bin/update-alternatives --install /usr/bin/rmiregistry rmiregistry /usr/lib/jvm/java-10-openjdk-amd64/bin/rmiregistry 1101 --slave /usr/share/man/man1/rmiregistry.1.gz rmiregistry.1.gz /usr/lib/jvm/java-10-openjdk-amd64/man/man1/rmiregistry.1.gz LOG-ALTERNATIVES: dpkg=openjdk-10-jre-headless: piuparts=nanook=1.33+dfsg-1: /usr/bin/update-alternatives --install /usr/bin/unpack200 unpack200 /usr/lib/jvm/java-10-openjdk-amd64/bin/unpack200 1101 --slave /usr/share/man/man1/unpack200.1.gz unpack200.1.gz /usr/lib/jvm/java-10-openjdk-amd64/man/man1/unpack200.1.gz LOG-ALTERNATIVES: dpkg=openjdk-10-jre-headless: piuparts=nanook=1.33+dfsg-1: /usr/bin/update-alternatives --install /usr/bin/orbd orbd /usr/lib/jvm/java-10-openjdk-amd64/bin/orbd 1101 --slave /usr/share/man/man1/orbd.1.gz orbd.1.gz /usr/lib/jvm/java-10-openjdk-amd64/man/man1/orbd.1.gz LOG-ALTERNATIVES: dpkg=openjdk-10-jre-headless: piuparts=nanook=1.33+dfsg-1: /usr/bin/update-alternatives --install /usr/bin/servertool servertool /usr/lib/jvm/java-10-openjdk-amd64/bin/servertool 1101 --slave /usr/share/man/man1/servertool.1.gz servertool.1.gz /usr/lib/jvm/java-10-openjdk-amd64/man/man1/servertool.1.gz LOG-ALTERNATIVES: dpkg=openjdk-10-jre-headless: piuparts=nanook=1.33+dfsg-1: /usr/bin/update-alternatives --install /usr/bin/tnameserv tnameserv /usr/lib/jvm/java-10-openjdk-amd64/bin/tnameserv 1101 --slave /usr/share/man/man1/tnameserv.1.gz tnameserv.1.gz /usr/lib/jvm/java-10-openjdk-amd64/man/man1/tnameserv.1.gz LOG-ALTERNATIVES: dpkg=openjdk-10-jre-headless: piuparts=nanook=1.33+dfsg-1: /usr/bin/update-alternatives --install /usr/bin/jexec jexec /usr/lib/jvm/java-10-openjdk-amd64/lib/jexec 1101 --slave /usr/share/binfmts/jar jexec-binfmt /usr/lib/jvm/java-10-openjdk-amd64/lib/jar.binfmt LOG-ALTERNATIVES: dpkg=texlive-binaries: piuparts=nanook=1.33+dfsg-1: /usr/bin/update-alternatives --install /usr/bin/xdvi.bin xdvi.bin /usr/bin/xdvi-xaw 30 LOG-ALTERNATIVES: dpkg=texlive-binaries: piuparts=nanook=1.33+dfsg-1: /usr/bin/update-alternatives --install /usr/bin/bibtex bibtex /usr/bin/bibtex.original 100 --slave /usr/share/man/man1/bibtex.1.gz bibtex.1.gz /usr/share/man/man1/bibtex.original.1.gz 1m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/post_install_log_alternatives'] 1m10.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1H2D7V'] 1m11.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1H2D7V'] 1m13.7s ERROR: WARN: Broken symlinks: /usr/share/ghostscript/9.25/Resource/CIDFSubst/DroidSansFallback.ttf -> ../../../../fonts/truetype/droid/DroidSansFallbackFull.ttf /usr/lib/debug/usr/lib/jvm/java-1.10.0-openjdk-amd64 -> java-10-openjdk-amd64 1m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m13.7s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 1.7.0~rc1 install ok installed base-files base-files 10.1 install ok installed base-passwd base-passwd 3.5.45 install ok installed bash bash 4.4.18-3.1 install ok installed bsdutils bsdutils 1:2.32.1-0.1 install ok installed ca-certificates ca-certificates 20180409 install ok installed ca-certificates-java ca-certificates-java 20180516 install ok installed coreutils coreutils 8.30-1 install ok installed dash dash 0.5.10.2-1 install ok installed debconf debconf 1.5.69 install ok installed debian-archive-keyring debian-archive-keyring 2017.7 install ok installed debianutils debianutils 4.8.6 install ok installed default-jre-headless default-jre-headless 2:1.10-68 install ok installed diffutils diffutils 1:3.6-1 install ok installed dpkg dpkg 1.19.0.5+b1 install ok installed e2fsprogs e2fsprogs 1.44.4-2 install ok installed fdisk fdisk 2.32.1-0.1 install ok installed findutils findutils 4.6.0+git+20180808-2 install ok installed fontconfig fontconfig 2.13.0-5 install ok installed fontconfig-config fontconfig-config 2.13.0-5 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-1 install ok installed fonts-lmodern fonts-lmodern 2.004.5-5 install ok installed gcc-8-base:amd64 gcc-8-base 8.2.0-7 install ok installed gpgv gpgv 2.2.10-1 install ok installed grep grep 3.1-2 install ok installed gzip gzip 1.9-2 install ok installed hdf5-tools hdf5-tools 1.10.0-patch1+docs-4+b2 install ok installed hostname hostname 3.20 install ok installed init-system-helpers init-system-helpers 1.54 install ok installed java-common java-common 0.68 install ok installed last-align last-align 938-1 install ok installed libacl1:amd64 libacl1 2.2.52-3+b1 install ok installed libaec0:amd64 libaec0 1.0.2-1 install ok installed libapache-pom-java libapache-pom-java 18-1 install ok installed libapt-pkg5.0:amd64 libapt-pkg5.0 1.7.0~rc1 install ok installed libattr1:amd64 libattr1 1:2.4.47-2+b2 install ok installed libaudit-common libaudit-common 1:2.8.4-2 install ok installed libaudit1:amd64 libaudit1 1:2.8.4-2 install ok installed libavahi-client3:amd64 libavahi-client3 0.7-4 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.7-4 install ok installed libavahi-common3:amd64 libavahi-common3 0.7-4 install ok installed libblas3:amd64 libblas3 3.8.0-1+b1 install ok installed libblkid1:amd64 libblkid1 2.32.1-0.1 install ok installed libbrotli1:amd64 libbrotli1 1.0.5-2 install ok installed libbsd0:amd64 libbsd0 0.9.1-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-9 install ok installed libc-bin libc-bin 2.27-6 install ok installed libc6:amd64 libc6 2.27-6 install ok installed libcairo2:amd64 libcairo2 1.15.12-1 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-1 install ok installed libcom-err2:amd64 libcom-err2 1.44.4-2 install ok installed libcommons-io-java libcommons-io-java 2.6-2 install ok installed libcommons-parent-java libcommons-parent-java 43-1 install ok installed libcups2:amd64 libcups2 2.2.8-5 install ok installed libcupsimage2:amd64 libcupsimage2 2.2.8-5 install ok installed libcurl4:amd64 libcurl4 7.61.0-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.12-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.2 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.12.10-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.244 install ok installed libexpat1:amd64 libexpat1 2.2.6-1 install ok installed libext2fs2:amd64 libext2fs2 1.44.4-2 install ok installed libfdisk1:amd64 libfdisk1 2.32.1-0.1 install ok installed libffi6:amd64 libffi6 3.2.1-8 install ok installed libfontconfig1:amd64 libfontconfig1 2.13.0-5 install ok installed libfreetype6:amd64 libfreetype6 2.8.1-2 install ok installed libfribidi0:amd64 libfribidi0 1.0.5-3 install ok installed libgcc1:amd64 libgcc1 1:8.2.0-7 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.3-1 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.14.1-6+b1 install ok installed libgdbm5:amd64 libgdbm5 1.14.1-6+b1 install ok installed libgfortran5:amd64 libgfortran5 8.2.0-7 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.58.0-4 install ok installed libgmp10:amd64 libgmp10 2:6.1.2+dfsg-3 install ok installed libgnutls30:amd64 libgnutls30 3.5.19-1+b1 install ok installed libgomp1:amd64 libgomp1 8.2.0-7 install ok installed libgpg-error0:amd64 libgpg-error0 1.32-1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.12-1 install ok installed libgs9:amd64 libgs9 9.25~dfsg-2 install ok installed libgs9-common libgs9-common 9.25~dfsg-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.16-2 install ok installed libharfbuzz-icu0:amd64 libharfbuzz-icu0 1.8.8-2 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 1.8.8-2 install ok installed libhdf5-100:amd64 libhdf5-100 1.10.0-patch1+docs-4+b2 install ok installed libhogweed4:amd64 libhogweed4 3.4-1 install ok installed libice6:amd64 libice6 2:1.0.9-2 install ok installed libicu-le-hb0:amd64 libicu-le-hb0 1.0.3+git161113-5 install ok installed libicu60:amd64 libicu60 60.2-6 install ok installed libidn11:amd64 libidn11 1.33-2.2 install ok installed libidn2-0:amd64 libidn2-0 2.0.5-1 install ok installed libijs-0.35:amd64 libijs-0.35 0.35-13 install ok installed libjbig0:amd64 libjbig0 2.1-3.1+b2 install ok installed libjbig2dec0:amd64 libjbig2dec0 0.15-1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:1.5.2-2+b1 install ok installed libk5crypto3:amd64 libk5crypto3 1.16-2 install ok installed libkeyutils1:amd64 libkeyutils1 1.5.9-9.3 install ok installed libkpathsea6:amd64 libkpathsea6 2018.20180907.48586-1 install ok installed libkrb5-3:amd64 libkrb5-3 1.16-2 install ok installed libkrb5support0:amd64 libkrb5support0 1.16-2 install ok installed liblapack3:amd64 liblapack3 3.8.0-1+b1 install ok installed liblcms2-2:amd64 liblcms2-2 2.9-3 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.46+dfsg-5 install ok installed libldap-common libldap-common 2.4.46+dfsg-5 install ok installed liblz4-1:amd64 liblz4-1 1.8.2-1 install ok installed liblzma5:amd64 liblzma5 5.2.2-1.3 install ok installed libmount1:amd64 libmount1 2.32.1-0.1 install ok installed libmpfr6:amd64 libmpfr6 4.0.1-1 install ok installed libncurses6:amd64 libncurses6 6.1+20180714-1 install ok installed libncursesw6:amd64 libncursesw6 6.1+20180714-1 install ok installed libnettle6:amd64 libnettle6 3.4-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.33.0-1 install ok installed libnspr4:amd64 libnspr4 2:4.20-1 install ok installed libnss3:amd64 libnss3 2:3.39-1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.3.0-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.14-2 install ok installed libpam-modules:amd64 libpam-modules 1.1.8-3.8 install ok installed libpam-modules-bin libpam-modules-bin 1.1.8-3.8 install ok installed libpam-runtime libpam-runtime 1.1.8-3.8 install ok installed libpam0g:amd64 libpam0g 1.1.8-3.8 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.42.4-3 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.42.4-3 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.42.4-3 install ok installed libpaper-utils libpaper-utils 1.1.24+nmu5 install ok installed libpaper1:amd64 libpaper1 1.1.24+nmu5 install ok installed libpcre3:amd64 libpcre3 2:8.39-11 install ok installed libpcsclite1:amd64 libpcsclite1 1.8.23-3 install ok installed libperl5.26:amd64 libperl5.26 5.26.2-7 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.34.0-2 install ok installed libpng16-16:amd64 libpng16-16 1.6.34-2 install ok installed libpotrace0:amd64 libpotrace0 1.15-1 install ok installed libprocps7:amd64 libprocps7 2:3.3.15-2 install ok installed libpsl5:amd64 libpsl5 0.20.2-1 install ok installed libptexenc1:amd64 libptexenc1 2018.20180907.48586-1 install ok installed libquadmath0:amd64 libquadmath0 8.2.0-7 install ok installed libreadline7:amd64 libreadline7 7.0-5 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.27~101-g0780600+dfsg-3.1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.27~101-g0780600+dfsg-3.1 install ok installed libseccomp2:amd64 libseccomp2 2.3.3-3 install ok installed libselinux1:amd64 libselinux1 2.8-1+b1 install ok installed libsemanage-common libsemanage-common 2.8-1 install ok installed libsemanage1:amd64 libsemanage1 2.8-1+b1 install ok installed libsensors4:amd64 libsensors4 1:3.4.0-4 install ok installed libsepol1:amd64 libsepol1 2.8-1 install ok installed libsm6:amd64 libsm6 2:1.2.2-1+b3 install ok installed libsmartcols1:amd64 libsmartcols1 2.32.1-0.1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.25.0-1 install ok installed libss2:amd64 libss2 1.44.4-2 install ok installed libssh2-1:amd64 libssh2-1 1.8.0-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1-1 install ok installed libstdc++6:amd64 libstdc++6 8.2.0-7 install ok installed libsynctex2:amd64 libsynctex2 2018.20180907.48586-1 install ok installed libsystemd0:amd64 libsystemd0 239-9 install ok installed libsz2:amd64 libsz2 1.0.2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.13-3 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.8+dfsg-4 install ok installed libtexlua52:amd64 libtexlua52 2018.20180907.48586-1 install ok installed libtexlua53:amd64 libtexlua53 2018.20180907.48586-1 install ok installed libtexluajit2:amd64 libtexluajit2 2018.20180907.48586-1 install ok installed libthai-data libthai-data 0.1.28-1 install ok installed libthai0:amd64 libthai0 0.1.28-1 install ok installed libtiff5:amd64 libtiff5 4.0.9-6 install ok installed libtinfo6:amd64 libtinfo6 6.1+20180714-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.8-4 install ok installed libudev1:amd64 libudev1 239-9 install ok installed libunistring2:amd64 libunistring2 0.9.10-1 install ok installed libuuid1:amd64 libuuid1 2.32.1-0.1 install ok installed libwoff1:amd64 libwoff1 1.0.2-1 install ok installed libx11-6:amd64 libx11-6 2:1.6.6-1 install ok installed libx11-data libx11-data 2:1.6.6-1 install ok installed libxau6:amd64 libxau6 1:1.0.8-1+b2 install ok installed libxaw7:amd64 libxaw7 2:1.0.13-1+b2 install ok installed libxcb-render0:amd64 libxcb-render0 1.13-3 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.13-3 install ok installed libxcb1:amd64 libxcb1 1.13-3 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.3-1+b2 install ok installed libxft2:amd64 libxft2 2.3.2-2 install ok installed libxi6:amd64 libxi6 2:1.7.9-1 install ok installed libxmu6:amd64 libxmu6 2:1.1.2-2 install ok installed libxpm4:amd64 libxpm4 1:3.5.12-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxt6:amd64 libxt6 1:1.1.5-1 install ok installed libxtst6:amd64 libxtst6 2:1.2.3-1 install ok installed libxxhash0:amd64 libxxhash0 0.6.5-1 install ok installed libzstd1:amd64 libzstd1 1.3.5+dfsg-1 install ok installed libzzip-0-13:amd64 libzzip-0-13 0.13.62-3.1 install ok installed littler littler 0.3.4-1 install ok installed login login 1:4.5-1.1 install ok installed lsb-base lsb-base 9.20170808 install ok installed mawk mawk 1.3.3-17+b3 install ok installed mount mount 2.32.1-0.1 install ok installed nanook nanook 1.33+dfsg-1 install ok installed ncurses-base ncurses-base 6.1+20180714-1 install ok installed ncurses-bin ncurses-bin 6.1+20180714-1 install ok installed openjdk-10-jre-headless:amd64 openjdk-10-jre-headless 10.0.2+13-1 install ok installed openssl openssl 1.1.1-1 install ok installed parallel parallel 20161222-1 install ok installed passwd passwd 1:4.5-1.1 install ok installed perl perl 5.26.2-7 install ok installed perl-base perl-base 5.26.2-7 install ok installed perl-modules-5.26 perl-modules-5.26 5.26.2-7 install ok installed poppler-data poppler-data 0.4.9-2 install ok installed procps procps 2:3.3.15-2 install ok installed r-base-core r-base-core 3.5.1-1+b1 install ok installed r-cran-assertthat r-cran-assertthat 0.2.0-2 install ok installed r-cran-cli r-cran-cli 1.0.0-2 install ok installed r-cran-colorspace r-cran-colorspace 1.3-2-3 install ok installed r-cran-crayon r-cran-crayon 1.3.4-4 install ok installed r-cran-digest r-cran-digest 0.6.17-1 install ok installed r-cran-fansi r-cran-fansi 0.3.0-1 install ok installed r-cran-ggplot2 r-cran-ggplot2 3.0.0-1 install ok installed r-cran-glue r-cran-glue 1.3.0-1 install ok installed r-cran-gridextra r-cran-gridextra 2.3-2 install ok installed r-cran-gtable r-cran-gtable 0.2.0-3 install ok installed r-cran-labeling r-cran-labeling 0.3-3 install ok installed r-cran-lattice r-cran-lattice 0.20-35-1+b2 install ok installed r-cran-lazyeval r-cran-lazyeval 0.2.1-3 install ok installed r-cran-littler r-cran-littler 0.3.4-1 install ok installed r-cran-magrittr r-cran-magrittr 1.5-5 install ok installed r-cran-mass r-cran-mass 7.3-50-1+b1 install ok installed r-cran-matrix r-cran-matrix 1.2-14-1+b3 install ok installed r-cran-mgcv r-cran-mgcv 1.8-24-1+b1 install ok installed r-cran-munsell r-cran-munsell 0.5.0-1 install ok installed r-cran-nlme r-cran-nlme 3.1.137-1+b3 install ok installed r-cran-pillar r-cran-pillar 1.3.0-1 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.1.4-2 install ok installed r-cran-plyr r-cran-plyr 1.8.4-2 install ok installed r-cran-r6 r-cran-r6 2.2.2-3 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-2-2 install ok installed r-cran-rcpp r-cran-rcpp 0.12.18-1 install ok installed r-cran-reshape r-cran-reshape 0.8.7-2 install ok installed r-cran-reshape2 r-cran-reshape2 1.4.3-2 install ok installed r-cran-rlang r-cran-rlang 0.2.2-1 install ok installed r-cran-scales r-cran-scales 1.0.0-2 install ok installed r-cran-stringi r-cran-stringi 1.2.4-1 install ok installed r-cran-stringr r-cran-stringr 1.3.1-2 install ok installed r-cran-tibble r-cran-tibble 1.4.2-3 install ok installed r-cran-utf8 r-cran-utf8 1.1.4-1+b1 install ok installed r-cran-viridislite r-cran-viridislite 0.3.0-3 install ok installed r-cran-withr r-cran-withr 2.1.2-3 install ok installed readline-common readline-common 7.0-5 install ok installed sed sed 4.5-1 install ok installed sensible-utils sensible-utils 0.0.12 install ok installed sysstat sysstat 12.0.1-1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-59.10 install ok installed t1utils t1utils 1.41-2 install ok installed tar tar 1.30+dfsg-2 install ok installed tex-common tex-common 6.10 install ok installed texlive-base texlive-base 2018.20180824-1 install ok installed texlive-binaries texlive-binaries 2018.20180907.48586-1 install ok installed texlive-latex-base texlive-latex-base 2018.20180824-1 install ok installed tzdata tzdata 2018e-1 install ok installed ucf ucf 3.0038 install ok installed unzip unzip 6.0-21 install ok installed util-linux util-linux 2.32.1-0.1 install ok installed x11-common x11-common 1:7.7+19 install ok installed xdg-utils xdg-utils 1.1.3-1 install ok installed xz-utils xz-utils 5.2.2-1.3 install ok installed zip zip 3.0-11+b1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-1 1m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m15.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', '-ac', '--ignore-obsolete'] 1m17.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', '-ac', '--ignore-obsolete'] 1m17.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m17.5s DUMP: 0.15.1 1m17.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m17.5s INFO: Running adequate version 0.15.1 now. 1m17.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'nanook'] 1m17.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'nanook'] 1m17.6s INFO: Running scripts pre_remove 1m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_remove_exceptions'] 1m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/pre_remove_exceptions'] 1m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'apt-get', 'remove', 'java-common', 'texlive-latex-base', 'libgssapi-krb5-2:amd64', 'libjbig2dec0:amd64', 'libssh2-1:amd64', 'fonts-dejavu-core', 'r-cran-rlang', 'libfreetype6:amd64', 'r-cran-reshape2', 'littler', 'sensible-utils', 'r-cran-gtable', 'libdbus-1-3:amd64', 'libtiff5:amd64', 'lsb-base', 'libxtst6:amd64', 'fontconfig', 'libprocps7:amd64', 'libsz2:amd64', 't1utils', 'libxcb1:amd64', 'libtexlua52:amd64', 'r-cran-rcpp', 'unzip', 'r-cran-reshape', 'libssl1.1:amd64', 'libpango-1.0-0:amd64', 'libtk8.6:amd64', 'libkrb5-3:amd64', 'libperl5.26:amd64', 'ca-certificates', 'r-base-core', 'libglib2.0-0:amd64', 'readline-common', 'r-cran-matrix', 'libgs9:amd64', 'libbsd0:amd64', 'ucf', 'libk5crypto3:amd64', 'libgomp1:amd64', 'libcommons-parent-java', 'libzzip-0-13:amd64', 'libpangocairo-1.0-0:amd64', 'libavahi-client3:amd64', 'libgraphite2-3:amd64', 'libdatrie1:amd64', 'openjdk-10-jre-headless:amd64', 'r-cran-rcolorbrewer', 'libpcsclite1:amd64', 'libxi6:amd64', 'libtcl8.6:amd64', 'libx11-6:amd64', 'r-cran-nlme', 'libreadline7:amd64', 'libgdbm-compat4:amd64', 'libfribidi0:amd64', 'r-cran-magrittr', 'r-cran-tibble', 'libquadmath0:amd64', 'r-cran-scales', 'libpsl5:amd64', 'libxext6:amd64', 'libharfbuzz-icu0:amd64', 'r-cran-plyr', 'xdg-utils', 'last-align', 'libthai0:amd64', 'poppler-data', 'libpng16-16:amd64', 'libxdmcp6:amd64', 'r-cran-digest', 'libnghttp2-14:amd64', 'libicu-le-hb0:amd64', 'libpaper-utils', 'r-cran-glue', 'r-cran-fansi', 'libaec0:amd64', 'ca-certificates-java', 'libtexlua53:amd64', 'openssl', 'libtexluajit2:amd64', 'procps', 'libharfbuzz0b:amd64', 'libldap-2.4-2:amd64', 'libxft2:amd64', 'libpangoft2-1.0-0:amd64', 'libapache-pom-java', 'librtmp1:amd64', 'r-cran-colorspace', 'r-cran-stringr', 'r-cran-pillar', 'libthai-data', 'r-cran-cli', 'texlive-binaries', 'libfontconfig1:amd64', 'libxcb-shm0:amd64', 'xz-utils', 'r-cran-munsell', 'libsm6:amd64', 'r-cran-stringi', 'libsqlite3-0:amd64', 'tzdata', 'libcupsimage2:amd64', 'zip', 'r-cran-mgcv', 'liblcms2-2:amd64', 'libptexenc1:amd64', 'libxss1:amd64', 'x11-common', 'default-jre-headless', 'r-cran-pkgkitten', 'r-cran-lazyeval', 'libmpfr6:amd64', 'libjbig0:amd64', 'libbrotli1:amd64', 'libcommons-io-java', 'libicu60:amd64', 'libnspr4:amd64', 'libgs9-common', 'libice6:amd64', 'libxxhash0:amd64', 'libxt6:amd64', 'libwoff1:amd64', 'libxmu6:amd64', 'libijs-0.35:amd64', 'libjpeg62-turbo:amd64', 'libavahi-common3:amd64', 'libopenjp2-7:amd64', 'libkpathsea6:amd64', 'libxcb-render0:amd64', 'r-cran-withr', 'libx11-data', 'libcairo2:amd64', 'texlive-base', 'r-cran-utf8', 'libblas3:amd64', 'libhdf5-100:amd64', 'sysstat', 'libkeyutils1:amd64', 'libpixman-1-0:amd64', 'r-cran-assertthat', 'r-cran-r6', 'libgdbm5:amd64', 'libgfortran5:amd64', 'tex-common', 'r-cran-crayon', 'fontconfig-config', 'r-cran-mass', 'fonts-lmodern', 'libsensors4:amd64', 'r-cran-gridextra', 'r-cran-viridislite', 'libcurl4:amd64', 'r-cran-littler', 'libxaw7:amd64', 'liblapack3:amd64', 'libsasl2-modules-db:amd64', 'libexpat1:amd64', 'libxau6:amd64', 'libsynctex2:amd64', 'perl', 'libpaper1:amd64', 'libxrender1:amd64', 'libpotrace0:amd64', 'libxpm4:amd64', 'r-cran-ggplot2', 'parallel', 'libidn11:amd64', 'r-cran-labeling', 'libnss3:amd64', 'perl-modules-5.26', 'libldap-common', 'libncurses6:amd64', 'libsasl2-2:amd64', 'libavahi-common-data:amd64', 'libkrb5support0:amd64', 'libcups2:amd64', 'r-cran-lattice', 'hdf5-tools', 'nanook'] 1m23.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates ca-certificates-java default-jre-headless fontconfig fontconfig-config fonts-dejavu-core fonts-lmodern hdf5-tools java-common last-align libaec0 libapache-pom-java libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libbrotli1 libbsd0 libcairo2 libcommons-io-java libcommons-parent-java libcups2 libcupsimage2 libcurl4 libdatrie1 libdbus-1-3 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgdbm-compat4 libgdbm5 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libharfbuzz-icu0 libharfbuzz0b libhdf5-100 libice6 libicu-le-hb0 libicu60 libidn11 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-2.4-2 libldap-common libmpfr6 libncurses6 libnghttp2-14 libnspr4 libnss3 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcsclite1 libperl5.26 libpixman-1-0 libpng16-16 libpotrace0 libprocps7 libpsl5 libptexenc1 libquadmath0 libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libsensors4 libsm6 libsqlite3-0 libssh2-1 libssl1.1 libsynctex2 libsz2 libtcl8.6 libtexlua52 libtexlua53 libtexluajit2 libthai-data libthai0 libtiff5 libtk8.6 libwoff1 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libxtst6 libxxhash0 libzzip-0-13 littler lsb-base nanook openjdk-10-jre-headless openssl parallel perl perl-modules-5.26 poppler-data procps r-base-core r-cran-assertthat r-cran-cli r-cran-colorspace r-cran-crayon r-cran-digest r-cran-fansi r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-labeling r-cran-lattice r-cran-lazyeval r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-reshape r-cran-reshape2 r-cran-rlang r-cran-scales r-cran-stringi r-cran-stringr r-cran-tibble r-cran-utf8 r-cran-viridislite r-cran-withr readline-common sensible-utils sysstat t1utils tex-common texlive-base texlive-binaries texlive-latex-base tzdata ucf unzip x11-common xdg-utils xz-utils zip 0 upgraded, 0 newly installed, 180 to remove and 0 not upgraded. After this operation, 596 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20840 files and directories currently installed.) Removing nanook (1.33+dfsg-1) ... Removing default-jre-headless (2:1.10-68) ... Removing r-cran-ggplot2 (3.0.0-1) ... Removing r-cran-mgcv (1.8-24-1+b1) ... Removing r-cran-matrix (1.2-14-1+b3) ... Removing r-cran-scales (1.0.0-2) ... Removing texlive-latex-base (2018.20180824-1) ... Removing fonts-lmodern (2.004.5-5) ... Removing hdf5-tools (1.10.0-patch1+docs-4+b2) ... Removing last-align (938-1) ... Removing libhdf5-100:amd64 (1.10.0-patch1+docs-4+b2) ... Removing libsz2:amd64 (1.0.2-1) ... Removing libaec0:amd64 (1.0.2-1) ... Removing libcommons-io-java (2.6-2) ... Removing libcommons-parent-java (43-1) ... Removing libapache-pom-java (18-1) ... Removing texlive-base (2018.20180824-1) ... Removing littler (0.3.4-1) ... Removing r-cran-reshape2 (1.4.3-2) ... Removing r-cran-stringr (1.3.1-2) ... Removing r-cran-stringi (1.2.4-1) ... Removing parallel (20161222-1) ... Removing 'diversion of /usr/bin/parallel to /usr/bin/parallel.moreutils by parallel' Removing 'diversion of /usr/share/man/man1/parallel.1.gz to /usr/share/man/man1/parallel.moreutils.1.gz by parallel' Removing r-cran-nlme (3.1.137-1+b3) ... Removing procps (2:3.3.15-2) ... Removing libncurses6:amd64 (6.1+20180714-1) ... Removing libprocps7:amd64 (2:3.3.15-2) ... Removing sysstat (12.0.1-1) ... Removing libsensors4:amd64 (1:3.4.0-4) ... Removing r-cran-tibble (1.4.2-3) ... Removing r-cran-pillar (1.3.0-1) ... Removing r-cran-cli (1.0.0-2) ... Removing r-cran-assertthat (0.2.0-2) ... Removing r-cran-munsell (0.5.0-1) ... Removing r-cran-colorspace (1.3-2-3) ... Removing r-cran-crayon (1.3.4-4) ... Removing r-cran-digest (0.6.17-1) ... Removing r-cran-fansi (0.3.0-1) ... Removing r-cran-glue (1.3.0-1) ... Removing r-cran-gridextra (2.3-2) ... Removing r-cran-gtable (0.2.0-3) ... Removing r-cran-labeling (0.3-3) ... Removing r-cran-lattice (0.20-35-1+b2) ... Removing r-cran-lazyeval (0.2.1-3) ... Removing r-cran-magrittr (1.5-5) ... Removing r-cran-mass (7.3-50-1+b1) ... Removing r-cran-reshape (0.8.7-2) ... Removing r-cran-plyr (1.8.4-2) ... Removing r-cran-r6 (2.2.2-3) ... Removing r-cran-rcolorbrewer (1.1-2-2) ... Removing r-cran-rlang (0.2.2-1) ... Removing r-cran-utf8 (1.1.4-1+b1) ... Removing r-cran-viridislite (0.3.0-3) ... Removing r-cran-withr (2.1.2-3) ... Removing xz-utils (5.2.2-1.3) ... Removing r-cran-rcpp (0.12.18-1) ... Removing texlive-binaries (2018.20180907.48586-1) ... Removing libgs9:amd64 (9.25~dfsg-2) ... Removing libcupsimage2:amd64 (2.2.8-5) ... Removing r-cran-littler (0.3.4-1) ... Removing libwoff1:amd64 (1.0.2-1) ... Removing libbrotli1:amd64 (1.0.5-2) ... Removing libxaw7:amd64 (2:1.0.13-1+b2) ... Removing libxmu6:amd64 (2:1.1.2-2) ... Removing perl (5.26.2-7) ... Removing libperl5.26:amd64 (5.26.2-7) ... Removing libgdbm-compat4:amd64 (1.14.1-6+b1) ... Removing libgdbm5:amd64 (1.14.1-6+b1) ... Removing libgs9-common (9.25~dfsg-2) ... Removing libharfbuzz-icu0:amd64 (1.8.8-2) ... Removing libidn11:amd64 (1.33-2.2) ... Removing libijs-0.35:amd64 (0.35-13) ... Removing libjbig2dec0:amd64 (0.15-1) ... Removing libptexenc1:amd64 (2018.20180907.48586-1) ... Removing libkpathsea6:amd64 (2018.20180907.48586-1) ... Removing libmpfr6:amd64 (4.0.1-1) ... Removing libopenjp2-7:amd64 (2.3.0-1) ... Removing libpotrace0:amd64 (1.15-1) ... Removing libsynctex2:amd64 (2018.20180907.48586-1) ... Removing libtexlua52:amd64 (2018.20180907.48586-1) ... Removing libtexlua53:amd64 (2018.20180907.48586-1) ... Removing libtexluajit2:amd64 (2018.20180907.48586-1) ... Removing libxpm4:amd64 (1:3.5.12-1) ... Removing libxxhash0:amd64 (0.6.5-1) ... Removing libzzip-0-13:amd64 (0.13.62-3.1) ... Removing perl-modules-5.26 (5.26.2-7) ... Removing poppler-data (0.4.9-2) ... Removing r-cran-pkgkitten (0.1.4-2) ... Removing tex-common (6.10) ... Removing t1utils (1.41-2) ... Removing r-base-core (3.5.1-1+b1) ... Removing libpangocairo-1.0-0:amd64 (1.42.4-3) ... Removing libpangoft2-1.0-0:amd64 (1.42.4-3) ... Removing libpango-1.0-0:amd64 (1.42.4-3) ... Removing fontconfig (2.13.0-5) ... Removing libtk8.6:amd64 (8.6.8-4) ... Removing libxft2:amd64 (2.3.2-2) ... Removing liblapack3:amd64 (3.8.0-1+b1) ... Removing libblas3:amd64 (3.8.0-1+b1) ... Removing libxt6:amd64 (1:1.1.5-1) ... Removing libcairo2:amd64 (1.15.12-1) ... Removing libxcb-shm0:amd64 (1.13-3) ... Removing libsm6:amd64 (2:1.2.2-1+b3) ... Removing libice6:amd64 (2:1.0.9-2) ... Removing libcurl4:amd64 (7.61.0-1) ... Removing libthai0:amd64 (0.1.28-1) ... Removing libdatrie1:amd64 (0.2.12-1) ... Removing libfribidi0:amd64 (1.0.5-3) ... Removing libgfortran5:amd64 (8.2.0-7) ... Removing libgomp1:amd64 (8.2.0-7) ... Removing libtiff5:amd64 (4.0.9-6) ... Removing libjbig0:amd64 (2.1-3.1+b2) ... Removing libldap-2.4-2:amd64 (2.4.46+dfsg-5) ... Removing libldap-common (2.4.46+dfsg-5) ... Removing libnghttp2-14:amd64 (1.33.0-1) ... Removing libpaper-utils (1.1.24+nmu5) ... Removing libpaper1:amd64 (1.1.24+nmu5) ... Removing libpixman-1-0:amd64 (0.34.0-2) ... Removing libpsl5:amd64 (0.20.2-1) ... Removing libquadmath0:amd64 (8.2.0-7) ... Removing libreadline7:amd64 (7.0-5) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Removing libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3.1) ... Removing libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3.1) ... Removing libssh2-1:amd64 (1.8.0-2) ... Removing libtcl8.6:amd64 (8.6.8+dfsg-4) ... Removing libthai-data (0.1.28-1) ... Removing libxcb-render0:amd64 (1.13-3) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing readline-common (7.0-5) ... Removing tzdata (2018e-1) ... Removing unzip (6.0-21) ... Removing xdg-utils (1.1.3-1) ... Removing zip (3.0-11+b1) ... Removing libicu60:amd64 (60.2-6) ... Removing libicu-le-hb0:amd64 (1.0.3+git161113-5) ... Removing libharfbuzz0b:amd64 (1.8.8-2) ... Removing libglib2.0-0:amd64 (2.58.0-4) ... Removing libgraphite2-3:amd64 (1.3.12-1) ... Removing openjdk-10-jre-headless:amd64 (10.0.2+13-1) ... Removing ca-certificates-java (20180516) ... Removing ca-certificates (20180409) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libfontconfig1:amd64 (2.13.0-5) ... Removing fontconfig-config (2.13.0-5) ... Removing fonts-dejavu-core (2.37-1) ... Removing java-common (0.68) ... Removing libcups2:amd64 (2.2.8-5) ... Removing libavahi-client3:amd64 (0.7-4) ... Removing libavahi-common3:amd64 (0.7-4) ... Removing libavahi-common-data:amd64 (0.7-4) ... Removing libxtst6:amd64 (2:1.2.3-1) ... Removing libdbus-1-3:amd64 (1.12.10-1) ... Removing libexpat1:amd64 (2.2.6-1) ... Removing libfreetype6:amd64 (2.8.1-2) ... Removing libgssapi-krb5-2:amd64 (1.16-2) ... Removing libjpeg62-turbo:amd64 (1:1.5.2-2+b1) ... Removing libkrb5-3:amd64 (1.16-2) ... Removing libk5crypto3:amd64 (1.16-2) ... Removing libkrb5support0:amd64 (1.16-2) ... Removing libkeyutils1:amd64 (1.5.9-9.3) ... Removing liblcms2-2:amd64 (2.9-3) ... Removing libnss3:amd64 (2:3.39-1) ... Removing libnspr4:amd64 (2:4.20-1) ... Removing libpcsclite1:amd64 (1.8.23-3) ... Removing libpng16-16:amd64 (1.6.34-2) ... Removing libsqlite3-0:amd64 (3.25.0-1) ... Removing openssl (1.1.1-1) ... Removing libssl1.1:amd64 (1.1.1-1) ... Removing libxi6:amd64 (2:1.7.9-1) ... Removing libxext6:amd64 (2:1.3.3-1+b2) ... Removing libxrender1:amd64 (1:0.9.10-1) ... Removing x11-common (1:7.7+19) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing lsb-base (9.20170808) ... Removing ucf (3.0038) ... Removing sensible-utils (0.0.12) ... Removing libx11-6:amd64 (2:1.6.6-1) ... Removing libxcb1:amd64 (1.13-3) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.9.1-1) ... Removing libx11-data (2:1.6.6-1) ... Removing libxau6:amd64 (1:1.0.8-1+b2) ... Processing triggers for libc-bin (2.27-6) ... 1m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'apt-get', 'remove', 'java-common', 'texlive-latex-base', 'libgssapi-krb5-2:amd64', 'libjbig2dec0:amd64', 'libssh2-1:amd64', 'fonts-dejavu-core', 'r-cran-rlang', 'libfreetype6:amd64', 'r-cran-reshape2', 'littler', 'sensible-utils', 'r-cran-gtable', 'libdbus-1-3:amd64', 'libtiff5:amd64', 'lsb-base', 'libxtst6:amd64', 'fontconfig', 'libprocps7:amd64', 'libsz2:amd64', 't1utils', 'libxcb1:amd64', 'libtexlua52:amd64', 'r-cran-rcpp', 'unzip', 'r-cran-reshape', 'libssl1.1:amd64', 'libpango-1.0-0:amd64', 'libtk8.6:amd64', 'libkrb5-3:amd64', 'libperl5.26:amd64', 'ca-certificates', 'r-base-core', 'libglib2.0-0:amd64', 'readline-common', 'r-cran-matrix', 'libgs9:amd64', 'libbsd0:amd64', 'ucf', 'libk5crypto3:amd64', 'libgomp1:amd64', 'libcommons-parent-java', 'libzzip-0-13:amd64', 'libpangocairo-1.0-0:amd64', 'libavahi-client3:amd64', 'libgraphite2-3:amd64', 'libdatrie1:amd64', 'openjdk-10-jre-headless:amd64', 'r-cran-rcolorbrewer', 'libpcsclite1:amd64', 'libxi6:amd64', 'libtcl8.6:amd64', 'libx11-6:amd64', 'r-cran-nlme', 'libreadline7:amd64', 'libgdbm-compat4:amd64', 'libfribidi0:amd64', 'r-cran-magrittr', 'r-cran-tibble', 'libquadmath0:amd64', 'r-cran-scales', 'libpsl5:amd64', 'libxext6:amd64', 'libharfbuzz-icu0:amd64', 'r-cran-plyr', 'xdg-utils', 'last-align', 'libthai0:amd64', 'poppler-data', 'libpng16-16:amd64', 'libxdmcp6:amd64', 'r-cran-digest', 'libnghttp2-14:amd64', 'libicu-le-hb0:amd64', 'libpaper-utils', 'r-cran-glue', 'r-cran-fansi', 'libaec0:amd64', 'ca-certificates-java', 'libtexlua53:amd64', 'openssl', 'libtexluajit2:amd64', 'procps', 'libharfbuzz0b:amd64', 'libldap-2.4-2:amd64', 'libxft2:amd64', 'libpangoft2-1.0-0:amd64', 'libapache-pom-java', 'librtmp1:amd64', 'r-cran-colorspace', 'r-cran-stringr', 'r-cran-pillar', 'libthai-data', 'r-cran-cli', 'texlive-binaries', 'libfontconfig1:amd64', 'libxcb-shm0:amd64', 'xz-utils', 'r-cran-munsell', 'libsm6:amd64', 'r-cran-stringi', 'libsqlite3-0:amd64', 'tzdata', 'libcupsimage2:amd64', 'zip', 'r-cran-mgcv', 'liblcms2-2:amd64', 'libptexenc1:amd64', 'libxss1:amd64', 'x11-common', 'default-jre-headless', 'r-cran-pkgkitten', 'r-cran-lazyeval', 'libmpfr6:amd64', 'libjbig0:amd64', 'libbrotli1:amd64', 'libcommons-io-java', 'libicu60:amd64', 'libnspr4:amd64', 'libgs9-common', 'libice6:amd64', 'libxxhash0:amd64', 'libxt6:amd64', 'libwoff1:amd64', 'libxmu6:amd64', 'libijs-0.35:amd64', 'libjpeg62-turbo:amd64', 'libavahi-common3:amd64', 'libopenjp2-7:amd64', 'libkpathsea6:amd64', 'libxcb-render0:amd64', 'r-cran-withr', 'libx11-data', 'libcairo2:amd64', 'texlive-base', 'r-cran-utf8', 'libblas3:amd64', 'libhdf5-100:amd64', 'sysstat', 'libkeyutils1:amd64', 'libpixman-1-0:amd64', 'r-cran-assertthat', 'r-cran-r6', 'libgdbm5:amd64', 'libgfortran5:amd64', 'tex-common', 'r-cran-crayon', 'fontconfig-config', 'r-cran-mass', 'fonts-lmodern', 'libsensors4:amd64', 'r-cran-gridextra', 'r-cran-viridislite', 'libcurl4:amd64', 'r-cran-littler', 'libxaw7:amd64', 'liblapack3:amd64', 'libsasl2-modules-db:amd64', 'libexpat1:amd64', 'libxau6:amd64', 'libsynctex2:amd64', 'perl', 'libpaper1:amd64', 'libxrender1:amd64', 'libpotrace0:amd64', 'libxpm4:amd64', 'r-cran-ggplot2', 'parallel', 'libidn11:amd64', 'r-cran-labeling', 'libnss3:amd64', 'perl-modules-5.26', 'libldap-common', 'libncurses6:amd64', 'libsasl2-2:amd64', 'libavahi-common-data:amd64', 'libkrb5support0:amd64', 'libcups2:amd64', 'r-cran-lattice', 'hdf5-tools', 'nanook'] 1m23.1s INFO: Running scripts post_remove 1m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/post_remove_exceptions'] 1m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/post_remove_exceptions'] 1m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'dpkg', '--purge', 'java-common', 'texlive-latex-base', 'libgssapi-krb5-2:amd64', 'libjbig2dec0:amd64', 'libssh2-1:amd64', 'fonts-dejavu-core', 'r-cran-rlang', 'libfreetype6:amd64', 'r-cran-reshape2', 'littler', 'sensible-utils', 'r-cran-gtable', 'libdbus-1-3:amd64', 'libtiff5:amd64', 'lsb-base', 'libxtst6:amd64', 'fontconfig', 'libprocps7:amd64', 'libsz2:amd64', 't1utils', 'libxcb1:amd64', 'libtexlua52:amd64', 'r-cran-rcpp', 'unzip', 'r-cran-reshape', 'libssl1.1:amd64', 'libpango-1.0-0:amd64', 'libtk8.6:amd64', 'libkrb5-3:amd64', 'libperl5.26:amd64', 'ca-certificates', 'r-base-core', 'libglib2.0-0:amd64', 'readline-common', 'r-cran-matrix', 'libgs9:amd64', 'libbsd0:amd64', 'ucf', 'libk5crypto3:amd64', 'libgomp1:amd64', 'libcommons-parent-java', 'libzzip-0-13:amd64', 'libpangocairo-1.0-0:amd64', 'libavahi-client3:amd64', 'libgraphite2-3:amd64', 'libdatrie1:amd64', 'openjdk-10-jre-headless:amd64', 'r-cran-rcolorbrewer', 'libpcsclite1:amd64', 'libxi6:amd64', 'libtcl8.6:amd64', 'libx11-6:amd64', 'r-cran-nlme', 'libreadline7:amd64', 'libgdbm-compat4:amd64', 'libfribidi0:amd64', 'r-cran-magrittr', 'r-cran-tibble', 'libquadmath0:amd64', 'r-cran-scales', 'libpsl5:amd64', 'libxext6:amd64', 'libharfbuzz-icu0:amd64', 'r-cran-plyr', 'xdg-utils', 'last-align', 'libthai0:amd64', 'poppler-data', 'libpng16-16:amd64', 'libxdmcp6:amd64', 'r-cran-digest', 'libnghttp2-14:amd64', 'libicu-le-hb0:amd64', 'libpaper-utils', 'r-cran-glue', 'r-cran-fansi', 'libaec0:amd64', 'ca-certificates-java', 'libtexlua53:amd64', 'openssl', 'libtexluajit2:amd64', 'procps', 'libharfbuzz0b:amd64', 'libldap-2.4-2:amd64', 'libxft2:amd64', 'libpangoft2-1.0-0:amd64', 'libapache-pom-java', 'librtmp1:amd64', 'r-cran-colorspace', 'r-cran-stringr', 'r-cran-pillar', 'libthai-data', 'r-cran-cli', 'texlive-binaries', 'libfontconfig1:amd64', 'libxcb-shm0:amd64', 'xz-utils', 'r-cran-munsell', 'libsm6:amd64', 'r-cran-stringi', 'libsqlite3-0:amd64', 'tzdata', 'libcupsimage2:amd64', 'zip', 'r-cran-mgcv', 'liblcms2-2:amd64', 'libptexenc1:amd64', 'libxss1:amd64', 'x11-common', 'default-jre-headless', 'r-cran-pkgkitten', 'r-cran-lazyeval', 'libmpfr6:amd64', 'libjbig0:amd64', 'libbrotli1:amd64', 'libcommons-io-java', 'libicu60:amd64', 'libnspr4:amd64', 'libgs9-common', 'libice6:amd64', 'libxxhash0:amd64', 'libxt6:amd64', 'libwoff1:amd64', 'libxmu6:amd64', 'libijs-0.35:amd64', 'libjpeg62-turbo:amd64', 'libavahi-common3:amd64', 'libopenjp2-7:amd64', 'libkpathsea6:amd64', 'libxcb-render0:amd64', 'r-cran-withr', 'libx11-data', 'libcairo2:amd64', 'texlive-base', 'r-cran-utf8', 'libblas3:amd64', 'libhdf5-100:amd64', 'sysstat', 'libkeyutils1:amd64', 'libpixman-1-0:amd64', 'r-cran-assertthat', 'r-cran-r6', 'libgdbm5:amd64', 'libgfortran5:amd64', 'tex-common', 'r-cran-crayon', 'fontconfig-config', 'r-cran-mass', 'fonts-lmodern', 'libsensors4:amd64', 'r-cran-gridextra', 'r-cran-viridislite', 'libcurl4:amd64', 'r-cran-littler', 'libxaw7:amd64', 'liblapack3:amd64', 'libsasl2-modules-db:amd64', 'libexpat1:amd64', 'libxau6:amd64', 'libsynctex2:amd64', 'perl', 'libpaper1:amd64', 'libxrender1:amd64', 'libpotrace0:amd64', 'libxpm4:amd64', 'r-cran-ggplot2', 'parallel', 'libidn11:amd64', 'r-cran-labeling', 'libnss3:amd64', 'perl-modules-5.26', 'libldap-common', 'libncurses6:amd64', 'libsasl2-2:amd64', 'libavahi-common-data:amd64', 'libkrb5support0:amd64', 'libcups2:amd64', 'r-cran-lattice', 'hdf5-tools'] 1m24.7s DUMP: (Reading database ... 4602 files and directories currently installed.) Purging configuration files for java-common (0.68) ... Purging configuration files for texlive-latex-base (2018.20180824-1) ... Purging configuration files for libgssapi-krb5-2:amd64 (1.16-2) ... dpkg: warning: ignoring request to remove libjbig2dec0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed Purging configuration files for fonts-dejavu-core (2.37-1) ... dpkg: warning: while removing fonts-dejavu-core, directory '/usr/share/fonts/truetype/dejavu' not empty so not removed dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove r-cran-reshape2 which isn't installed dpkg: warning: ignoring request to remove littler which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed dpkg: warning: ignoring request to remove r-cran-gtable which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove lsb-base which isn't installed dpkg: warning: ignoring request to remove libxtst6 which isn't installed Purging configuration files for fontconfig (2.13.0-5) ... dpkg: warning: ignoring request to remove libprocps7 which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove t1utils which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libtexlua52 which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed Purging configuration files for unzip (6.0-21) ... dpkg: warning: ignoring request to remove r-cran-reshape which isn't installed Purging configuration files for libssl1.1:amd64 (1.1.1-1) ... dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libperl5.26 which isn't installed Purging configuration files for ca-certificates (20180409) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for r-base-core (3.5.1-1+b1) ... Purging configuration files for libglib2.0-0:amd64 (2.58.0-4) ... Purging configuration files for readline-common (7.0-5) ... dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove libgs9 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed Purging configuration files for ucf (3.0038) ... dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libcommons-parent-java which isn't installed dpkg: warning: ignoring request to remove libzzip-0-13 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed Purging configuration files for openjdk-10-jre-headless:amd64 (10.0.2+13-1) ... dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove libpcsclite1 which isn't installed dpkg: warning: ignoring request to remove libxi6 which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed dpkg: warning: ignoring request to remove libreadline7 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove r-cran-scales which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz-icu0 which isn't installed dpkg: warning: ignoring request to remove r-cran-plyr which isn't installed dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove last-align which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed Purging configuration files for poppler-data (0.4.9-2) ... dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Korea1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Japan2' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-Japan1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-GB1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/poppler/cMap/Adobe-CNS1' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/fonts/cmap' not empty so not removed dpkg: warning: while removing poppler-data, directory '/usr/share/fonts/cMap' not empty so not removed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove r-cran-digest which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libicu-le-hb0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed dpkg: warning: ignoring request to remove r-cran-glue which isn't installed dpkg: warning: ignoring request to remove r-cran-fansi which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed Purging configuration files for ca-certificates-java (20180516) ... dpkg: warning: ignoring request to remove libtexlua53 which isn't installed Purging configuration files for openssl (1.1.1-1) ... dpkg: warning: ignoring request to remove libtexluajit2 which isn't installed Purging configuration files for procps (2:3.3.15-2) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libapache-pom-java which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove r-cran-colorspace which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove r-cran-cli which isn't installed dpkg: warning: ignoring request to remove texlive-binaries which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove xz-utils which isn't installed dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed Purging configuration files for tzdata (2018e-1) ... dpkg: warning: ignoring request to remove libcupsimage2 which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libptexenc1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed Purging configuration files for x11-common (1:7.7+19) ... dpkg: warning: ignoring request to remove default-jre-headless which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-lazyeval which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcommons-io-java which isn't installed dpkg: warning: ignoring request to remove libicu60 which isn't installed dpkg: warning: ignoring request to remove libnspr4 which isn't installed dpkg: warning: ignoring request to remove libgs9-common which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libxxhash0 which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove libwoff1 which isn't installed dpkg: warning: ignoring request to remove libxmu6 which isn't installed dpkg: warning: ignoring request to remove libijs-0.35 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libkpathsea6 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove r-cran-withr which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed Purging configuration files for texlive-base (2018.20180824-1) ... dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libhdf5-100 which isn't installed Purging configuration files for sysstat (12.0.1-1) ... dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove r-cran-assertthat which isn't installed dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed dpkg: warning: ignoring request to remove libgdbm5 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for tex-common (6.10) ... dpkg: warning: ignoring request to remove r-cran-crayon which isn't installed Purging configuration files for fontconfig-config (2.13.0-5) ... dpkg: warning: ignoring request to remove r-cran-mass which isn't installed Purging configuration files for fonts-lmodern (2.004.5-5) ... dpkg: warning: while removing fonts-lmodern, directory '/usr/share/texmf/fonts/opentype/public/lm-math' not empty so not removed dpkg: warning: while removing fonts-lmodern, directory '/usr/share/texmf/fonts/opentype/public/lm' not empty so not removed Purging configuration files for libsensors4:amd64 (1:3.4.0-4) ... dpkg: warning: ignoring request to remove r-cran-gridextra which isn't installed dpkg: warning: ignoring request to remove r-cran-viridislite which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove libxaw7 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libsynctex2 which isn't installed Purging configuration files for perl (5.26.2-7) ... Purging configuration files for libpaper1:amd64 (1.1.24+nmu5) ... dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libpotrace0 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed dpkg: warning: ignoring request to remove r-cran-ggplot2 which isn't installed Purging configuration files for parallel (20161222-1) ... dpkg: warning: ignoring request to remove libidn11 which isn't installed dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove perl-modules-5.26 which isn't installed Purging configuration files for libldap-common (2.4.46+dfsg-5) ... dpkg: warning: ignoring request to remove libncurses6 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove libcups2 which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove hdf5-tools which isn't installed 1m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'dpkg', '--purge', 'java-common', 'texlive-latex-base', 'libgssapi-krb5-2:amd64', 'libjbig2dec0:amd64', 'libssh2-1:amd64', 'fonts-dejavu-core', 'r-cran-rlang', 'libfreetype6:amd64', 'r-cran-reshape2', 'littler', 'sensible-utils', 'r-cran-gtable', 'libdbus-1-3:amd64', 'libtiff5:amd64', 'lsb-base', 'libxtst6:amd64', 'fontconfig', 'libprocps7:amd64', 'libsz2:amd64', 't1utils', 'libxcb1:amd64', 'libtexlua52:amd64', 'r-cran-rcpp', 'unzip', 'r-cran-reshape', 'libssl1.1:amd64', 'libpango-1.0-0:amd64', 'libtk8.6:amd64', 'libkrb5-3:amd64', 'libperl5.26:amd64', 'ca-certificates', 'r-base-core', 'libglib2.0-0:amd64', 'readline-common', 'r-cran-matrix', 'libgs9:amd64', 'libbsd0:amd64', 'ucf', 'libk5crypto3:amd64', 'libgomp1:amd64', 'libcommons-parent-java', 'libzzip-0-13:amd64', 'libpangocairo-1.0-0:amd64', 'libavahi-client3:amd64', 'libgraphite2-3:amd64', 'libdatrie1:amd64', 'openjdk-10-jre-headless:amd64', 'r-cran-rcolorbrewer', 'libpcsclite1:amd64', 'libxi6:amd64', 'libtcl8.6:amd64', 'libx11-6:amd64', 'r-cran-nlme', 'libreadline7:amd64', 'libgdbm-compat4:amd64', 'libfribidi0:amd64', 'r-cran-magrittr', 'r-cran-tibble', 'libquadmath0:amd64', 'r-cran-scales', 'libpsl5:amd64', 'libxext6:amd64', 'libharfbuzz-icu0:amd64', 'r-cran-plyr', 'xdg-utils', 'last-align', 'libthai0:amd64', 'poppler-data', 'libpng16-16:amd64', 'libxdmcp6:amd64', 'r-cran-digest', 'libnghttp2-14:amd64', 'libicu-le-hb0:amd64', 'libpaper-utils', 'r-cran-glue', 'r-cran-fansi', 'libaec0:amd64', 'ca-certificates-java', 'libtexlua53:amd64', 'openssl', 'libtexluajit2:amd64', 'procps', 'libharfbuzz0b:amd64', 'libldap-2.4-2:amd64', 'libxft2:amd64', 'libpangoft2-1.0-0:amd64', 'libapache-pom-java', 'librtmp1:amd64', 'r-cran-colorspace', 'r-cran-stringr', 'r-cran-pillar', 'libthai-data', 'r-cran-cli', 'texlive-binaries', 'libfontconfig1:amd64', 'libxcb-shm0:amd64', 'xz-utils', 'r-cran-munsell', 'libsm6:amd64', 'r-cran-stringi', 'libsqlite3-0:amd64', 'tzdata', 'libcupsimage2:amd64', 'zip', 'r-cran-mgcv', 'liblcms2-2:amd64', 'libptexenc1:amd64', 'libxss1:amd64', 'x11-common', 'default-jre-headless', 'r-cran-pkgkitten', 'r-cran-lazyeval', 'libmpfr6:amd64', 'libjbig0:amd64', 'libbrotli1:amd64', 'libcommons-io-java', 'libicu60:amd64', 'libnspr4:amd64', 'libgs9-common', 'libice6:amd64', 'libxxhash0:amd64', 'libxt6:amd64', 'libwoff1:amd64', 'libxmu6:amd64', 'libijs-0.35:amd64', 'libjpeg62-turbo:amd64', 'libavahi-common3:amd64', 'libopenjp2-7:amd64', 'libkpathsea6:amd64', 'libxcb-render0:amd64', 'r-cran-withr', 'libx11-data', 'libcairo2:amd64', 'texlive-base', 'r-cran-utf8', 'libblas3:amd64', 'libhdf5-100:amd64', 'sysstat', 'libkeyutils1:amd64', 'libpixman-1-0:amd64', 'r-cran-assertthat', 'r-cran-r6', 'libgdbm5:amd64', 'libgfortran5:amd64', 'tex-common', 'r-cran-crayon', 'fontconfig-config', 'r-cran-mass', 'fonts-lmodern', 'libsensors4:amd64', 'r-cran-gridextra', 'r-cran-viridislite', 'libcurl4:amd64', 'r-cran-littler', 'libxaw7:amd64', 'liblapack3:amd64', 'libsasl2-modules-db:amd64', 'libexpat1:amd64', 'libxau6:amd64', 'libsynctex2:amd64', 'perl', 'libpaper1:amd64', 'libxrender1:amd64', 'libpotrace0:amd64', 'libxpm4:amd64', 'r-cran-ggplot2', 'parallel', 'libidn11:amd64', 'r-cran-labeling', 'libnss3:amd64', 'perl-modules-5.26', 'libldap-common', 'libncurses6:amd64', 'libsasl2-2:amd64', 'libavahi-common-data:amd64', 'libkrb5support0:amd64', 'libcups2:amd64', 'r-cran-lattice', 'hdf5-tools'] 1m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'dpkg', '--purge', 'nanook'] 1m24.8s DUMP: dpkg: warning: ignoring request to remove nanook which isn't installed 1m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'dpkg', '--purge', 'nanook'] 1m24.8s INFO: Running scripts post_purge 1m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/post_purge_exceptions'] 1m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/post_purge_exceptions'] 1m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'dpkg', '--purge', '--pending'] 1m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'dpkg', '--purge', '--pending'] 1m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'dpkg', '--remove', '--pending'] 1m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'dpkg', '--remove', '--pending'] 1m24.8s INFO: Running scripts post_test 1m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/post_test_exceptions'] 1m24.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'tmp/scripts/post_test_exceptions'] 1m24.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1H2D7V'] 1m25.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp1H2D7V'] 1m25.6s DEBUG: No broken symlinks as far as we can find. 1m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'dpkg-divert', '--list'] 1m25.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 1m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'dpkg-divert', '--list'] 1m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'apt-get', 'clean'] 1m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp1H2D7V', 'apt-get', 'clean'] 1m25.7s DEBUG: Recording chroot state 1m26.7s INFO: Warning: Package purging left files on system: /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: fonts-dejavu-core, poppler-data /usr/share/fonts/.uuid not owned /usr/share/fonts/cMap/ owned by: poppler-data /usr/share/fonts/cMap/.uuid not owned /usr/share/fonts/cmap/ owned by: poppler-data /usr/share/fonts/cmap/.uuid not owned /usr/share/fonts/truetype/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/dejavu/ owned by: fonts-dejavu-core /usr/share/fonts/truetype/dejavu/.uuid not owned /usr/share/poppler/ owned by: poppler-data /usr/share/poppler/cMap/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-CNS1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-CNS1/.uuid not owned /usr/share/poppler/cMap/Adobe-GB1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-GB1/.uuid not owned /usr/share/poppler/cMap/Adobe-Japan1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Japan1/.uuid not owned /usr/share/poppler/cMap/Adobe-Japan2/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Japan2/.uuid not owned /usr/share/poppler/cMap/Adobe-Korea1/ owned by: poppler-data /usr/share/poppler/cMap/Adobe-Korea1/.uuid not owned /usr/share/texmf/ owned by: texlive-base, r-base-core, fonts-lmodern, tex-common /usr/share/texmf/fonts/ owned by: fonts-lmodern /usr/share/texmf/fonts/opentype/ owned by: fonts-lmodern /usr/share/texmf/fonts/opentype/public/ owned by: fonts-lmodern /usr/share/texmf/fonts/opentype/public/lm-math/ owned by: fonts-lmodern /usr/share/texmf/fonts/opentype/public/lm-math/.uuid not owned /usr/share/texmf/fonts/opentype/public/lm/ owned by: fonts-lmodern /usr/share/texmf/fonts/opentype/public/lm/.uuid not owned These files seem to have been left by dependencies rather than by packages being explicitly tested. 1m26.7s INFO: PASS: Installation and purging test. 1m27.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1H2D7V/dev/shm'] 1m27.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1H2D7V/dev/shm'] 1m27.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1H2D7V/dev/console'] 1m27.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1H2D7V/dev/console'] 1m27.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1H2D7V/dev/ptmx'] 1m27.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1H2D7V/dev/ptmx'] 1m27.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1H2D7V/dev/pts'] 1m27.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1H2D7V/dev/pts'] 1m27.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp1H2D7V/proc'] 1m27.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp1H2D7V/proc'] 1m27.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp1H2D7V'] 1m27.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp1H2D7V'] 1m27.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp1H2D7V 1m27.4s INFO: PASS: All tests. 1m27.4s INFO: piuparts run ends. ret=0 End: 2018-09-20 03:17:21 UTC