Start: 2024-02-25 05:09:40 GMT Package: pbsuite Version: 15.8.24+dfsg-7 Installed-Size: 12 Maintainer: Debian Med Packaging Team Architecture: all Depends: pbjelly, pbhoney Description: software for Pacific Biosciences sequencing data Homepage: http://sourceforge.net/projects/pb-jelly Description-md5: ff8ccb949cd3eb854a02e196473aab76 Section: metapackages Priority: optional Filename: pool/main/p/pbsuite/pbsuite_15.8.24+dfsg-7_all.deb Size: 5416 MD5sum: 80704159612e111baa609ec8833fa8e3 SHA256: f980757bb7167f22f2f7ac2b51b9f3a1dccfeac55c59b3f80bd1aa78a9e9aea1 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt pbsuite=15.8.24+dfsg-7 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.3.1~202401311836~1.3-2-g28295102 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt pbsuite=15.8.24+dfsg-7 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp2m8iyoyl 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp2m8iyoyl 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmp2m8iyoyl/tmp/scripts/ 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp2m8iyoyl/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'apt-get', 'update'] 0m4.8s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9750 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7154 kB] Fetched 17.1 MB in 3s (5422 kB/s) Reading package lists... 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'apt-get', 'update'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'apt-get', '-yf', 'dist-upgrade'] 0m6.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: libpcre2-8-0 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 262 kB of archives. After this operation, 1024 B of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.42-4+b1 [262 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 262 kB in 0s (4246 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5224 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.42-4+b1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.42-4+b1) over (10.42-4) ... Setting up libpcre2-8-0:amd64 (10.42-4+b1) ... Processing triggers for libc-bin (2.37-15) ... 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'apt-get', '-yf', 'dist-upgrade'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.6s DUMP: 96e7054ed1dbeae3f1e3d79f505b1fc9 - 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.6s INFO: Running scripts post_setup 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/post_setup_dummy_users'] 0m7.8s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/post_setup_dummy_users'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/post_setup_forbid_home'] 0m7.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/post_setup_forbid_home'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/post_setup_minimize'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/post_setup_minimize'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/post_setup_zz_backports'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/post_setup_zz_backports'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'apt-get', 'clean'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'apt-get', 'clean'] 0m7.9s DEBUG: Recording chroot state 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.4s DUMP: install ok installed apt apt 2.7.12 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.39.3-6 install ok installed coreutils coreutils 9.4-3+b1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.16 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.4 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240201-3 install ok installed gpgv gpgv 2.2.40-1.1+b1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.12 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2 install ok installed libblkid1:amd64 libblkid1 2.39.3-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b2 install ok installed libc-bin libc-bin 2.37-15 install ok installed libc6:amd64 libc6 2.37-15 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-4+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240201-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30:amd64 libgnutls30 3.8.3-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzma5:amd64 liblzma5 5.4.5-0.3 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.39.3-6 install ok installed libnettle8:amd64 libnettle8 3.9.1-2+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1+b1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b2 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-6 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssl3:amd64 libssl3 3.1.5-1 install ok installed libstdc++6:amd64 libstdc++6 14-20240201-3 install ok installed libsystemd0:amd64 libsystemd0 255.3-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libudev1:amd64 libudev1 255.3-2 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.3-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.39.3-6 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl-base perl-base 5.38.2-3 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.08-6 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.39.3-6 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3+b1 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'dpkg-divert', '--list'] 0m8.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'dpkg-divert', '--list'] 0m8.4s INFO: Running scripts is_testable 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/is_testable_uninstallable'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/is_testable_uninstallable'] 0m8.4s INFO: apt-cache does not know about any of the requested packages 0m8.4s INFO: Running scripts pre_test 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_test_exceptions'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_test_exceptions'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_test_root_password'] 0m8.5s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_test_root_password'] 0m8.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl'] 0m8.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl'] 0m9.2s DEBUG: No broken symlinks as far as we can find. 0m9.2s INFO: Running scripts pre_install 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_install_database-server'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_install_database-server'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_install_exceptions'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_install_exceptions'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_install_extras'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_install_extras'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_install_log_alternatives'] 0m9.2s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' dpkg-divert: warning: diverting file '/usr/bin/update-alternatives' from an Essential package with rename is dangerous, use --no-rename 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_install_log_alternatives'] 0m9.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl'] 0m9.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl'] 0m10.0s DEBUG: No broken symlinks as far as we can find. 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'apt-cache', 'policy'] 0m11.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'apt-cache', 'policy'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'apt-cache', 'policy', 'pbsuite'] 0m11.0s DUMP: pbsuite: Installed: (none) Candidate: 15.8.24+dfsg-7 Version table: 15.8.24+dfsg-7 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'apt-cache', 'policy', 'pbsuite'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'apt-get', '-y', 'install', 'pbsuite=15.8.24+dfsg-7'] 0m35.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: blasr libaec0 libblas3 libblasr5.3.5 libbrotli1 libcurl3-gnutls libcurl4 libdeflate0 libexpat1 libgfortran5 libgssapi-krb5-2 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-hl-100 libhts3 libhtscodecs2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.5-0 liblzf1 libncurses6 libncursesw6 libnghttp2-14 libnsl2 libpbbam2.4.0 libpbcopper2.3.0 libpbseq libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libsz2 libtirpc-common libtirpc3 media-types netbase pbhoney pbjelly python3 python3-h5py python3-h5py-serial python3-intervaltree python3-intervaltree-bio python3-minimal python3-networkx python3-numpy python3-pbbanana python3-pbsuite-utils python3-pkg-resources python3-pysam python3-sortedcontainers python3.11 python3.11-minimal python3.12 python3.12-minimal readline-common samtools Suggested packages: krb5-doc krb5-user python3-doc python3-tk python3-venv python-h5py-doc gcc gfortran python3-dev python3-pytest python3-setuptools python-sortedcontainers-doc python3.11-venv python3.11-doc binutils binfmt-support python3.12-venv python3.12-doc readline-doc cwltool Recommended packages: ca-certificates krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules pbdagcon python3-gdal python3-matplotlib python3-pydot python3-pygraphviz python3-scipy python3-yaml The following NEW packages will be installed: blasr libaec0 libblas3 libblasr5.3.5 libbrotli1 libcurl3-gnutls libcurl4 libdeflate0 libexpat1 libgfortran5 libgssapi-krb5-2 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-hl-100 libhts3 libhtscodecs2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.5-0 liblzf1 libncurses6 libncursesw6 libnghttp2-14 libnsl2 libpbbam2.4.0 libpbcopper2.3.0 libpbseq libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libsz2 libtirpc-common libtirpc3 media-types netbase pbhoney pbjelly pbsuite python3 python3-h5py python3-h5py-serial python3-intervaltree python3-intervaltree-bio python3-minimal python3-networkx python3-numpy python3-pbbanana python3-pbsuite-utils python3-pkg-resources python3-pysam python3-sortedcontainers python3.11 python3.11-minimal python3.12 python3.12-minimal readline-common samtools 0 upgraded, 69 newly installed, 0 to remove and 0 not upgraded. Need to get 40.1 MB of archives. After this operation, 193 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.8-1 [817 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.0-1 [101 kB] Get:3 http://deb.debian.org/debian sid/main amd64 python3.11-minimal amd64 3.11.8-1 [2037 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.11.6-1 [26.2 kB] Get:5 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:6 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.4+20240113-1 [135 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-5+b1 [33.2 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-5+b1 [80.0 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:11 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-5+b1 [333 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-5+b1 [135 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1 [10.7 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libtirpc3 amd64 1.3.4+ds-1 [82.1 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-3 [40.0 kB] Get:16 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-3 [69.1 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libreadline8 amd64 8.2-3+b1 [167 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.45.1-1 [894 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.8-1 [1825 kB] Get:20 http://deb.debian.org/debian sid/main amd64 python3.11 amd64 3.11.8-1 [597 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.11.6-1 [9224 B] Get:22 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.11.6-1 [26.2 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libpython3.12-minimal amd64 3.12.2-1 [807 kB] Get:24 http://deb.debian.org/debian sid/main amd64 python3.12-minimal amd64 3.12.2-1 [2186 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-4+b1 [19.7 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-4+b1 [57.0 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5+b3 [184 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.59.0-1 [74.3 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libpsl5 amd64 0.21.2-1+b1 [59.1 kB] Get:31 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libssh2-1 amd64 1.11.0-4 [215 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libcurl4 amd64 8.6.0-3 [430 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libaec0 amd64 1.1.2-1 [23.4 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.1.2-1 [7684 B] Get:36 http://deb.debian.org/debian sid/main amd64 libhdf5-103-1 amd64 1.10.10+repack-3+b1 [1243 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libhdf5-cpp-103-1 amd64 1.10.10+repack-3+b1 [131 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libcurl3-gnutls amd64 8.6.0-3 [421 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.19-1 [41.4 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libhtscodecs2 amd64 1.6.0-1+b1 [93.0 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libhts3 amd64 1.19+ds-1 [447 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libpbcopper2.3.0 amd64 2.3.0+dfsg-2 [740 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libpbbam2.4.0 amd64 2.4.0+dfsg-1+b2 [819 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libblasr5.3.5 amd64 5.3.5+dfsg-6+b2 [1093 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libpbseq amd64 5.3.5+dfsg-6+b2 [5008 B] Get:46 http://deb.debian.org/debian sid/main amd64 blasr amd64 5.3.5+dfsg-6+b3 [224 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14-20240201-3 [836 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-100 amd64 1.10.10+repack-3+b1 [63.3 kB] Get:50 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get:51 http://deb.debian.org/debian sid/main amd64 liblzf1 amd64 3.6-4 [10.1 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libncurses6 amd64 6.4+20240113-1 [104 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libpython3.12-stdlib amd64 3.12.2-1 [1929 kB] Get:54 http://deb.debian.org/debian sid/main amd64 python3-pysam amd64 0.22.0+ds-1+b1 [4110 kB] Get:55 http://deb.debian.org/debian sid/main amd64 python3-pbsuite-utils all 15.8.24+dfsg-7 [509 kB] Get:56 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get:57 http://deb.debian.org/debian sid/main amd64 python3-networkx all 2.8.8-1 [1425 kB] Get:58 http://deb.debian.org/debian sid/main amd64 pbjelly all 15.8.24+dfsg-7 [967 kB] Get:59 http://deb.debian.org/debian sid/main amd64 python3-pbbanana all 15.8.24+dfsg-7 [20.1 kB] Get:60 http://deb.debian.org/debian sid/main amd64 python3.12 amd64 3.12.2-1 [653 kB] Get:61 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.24.2-2 [6299 kB] Get:62 http://deb.debian.org/debian sid/main amd64 python3-h5py-serial amd64 3.10.0-1 [1399 kB] Get:63 http://deb.debian.org/debian sid/main amd64 python3-h5py all 3.10.0-1 [14.4 kB] Get:64 http://deb.debian.org/debian sid/main amd64 python3-sortedcontainers all 2.4.0-2 [31.9 kB] Get:65 http://deb.debian.org/debian sid/main amd64 python3-intervaltree all 3.0.2-1.1 [26.3 kB] Get:66 http://deb.debian.org/debian sid/main amd64 python3-intervaltree-bio all 1.0.1-4 [8640 B] Get:67 http://deb.debian.org/debian sid/main amd64 samtools amd64 1.19.2-1 [645 kB] Get:68 http://deb.debian.org/debian sid/main amd64 pbhoney all 15.8.24+dfsg-7 [1056 kB] Get:69 http://deb.debian.org/debian sid/main amd64 pbsuite all 15.8.24+dfsg-7 [5416 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.1 MB in 1s (31.2 MB/s) Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5228 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.8-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.8-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.8-1_amd64.deb ... Unpacking python3.11-minimal (3.11.8-1) ... Setting up libpython3.11-minimal:amd64 (3.11.8-1) ... Setting up libexpat1:amd64 (2.6.0-1) ... Setting up python3.11-minimal (3.11.8-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5544 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.11.6-1_amd64.deb ... 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Preparing to unpack .../19-libhts3_1.19+ds-1_amd64.deb ... Unpacking libhts3:amd64 (1.19+ds-1) ... Selecting previously unselected package libpbcopper2.3.0:amd64. Preparing to unpack .../20-libpbcopper2.3.0_2.3.0+dfsg-2_amd64.deb ... Unpacking libpbcopper2.3.0:amd64 (2.3.0+dfsg-2) ... Selecting previously unselected package libpbbam2.4.0:amd64. Preparing to unpack .../21-libpbbam2.4.0_2.4.0+dfsg-1+b2_amd64.deb ... Unpacking libpbbam2.4.0:amd64 (2.4.0+dfsg-1+b2) ... Selecting previously unselected package libblasr5.3.5:amd64. Preparing to unpack .../22-libblasr5.3.5_5.3.5+dfsg-6+b2_amd64.deb ... Unpacking libblasr5.3.5:amd64 (5.3.5+dfsg-6+b2) ... Selecting previously unselected package libpbseq:amd64. Preparing to unpack .../23-libpbseq_5.3.5+dfsg-6+b2_amd64.deb ... Unpacking libpbseq:amd64 (5.3.5+dfsg-6+b2) ... Selecting previously unselected package blasr. Preparing to unpack .../24-blasr_5.3.5+dfsg-6+b3_amd64.deb ... Unpacking blasr (5.3.5+dfsg-6+b3) ... 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Unpacking libncurses6:amd64 (6.4+20240113-1) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../31-libpython3.12-stdlib_3.12.2-1_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.2-1) ... Selecting previously unselected package python3-pysam. Preparing to unpack .../32-python3-pysam_0.22.0+ds-1+b1_amd64.deb ... Unpacking python3-pysam (0.22.0+ds-1+b1) ... Selecting previously unselected package python3-pbsuite-utils. Preparing to unpack .../33-python3-pbsuite-utils_15.8.24+dfsg-7_all.deb ... Unpacking python3-pbsuite-utils (15.8.24+dfsg-7) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../34-python3-pkg-resources_68.1.2-2_all.deb ... Unpacking python3-pkg-resources (68.1.2-2) ... Selecting previously unselected package python3-networkx. Preparing to unpack .../35-python3-networkx_2.8.8-1_all.deb ... Unpacking python3-networkx (2.8.8-1) ... Selecting previously unselected package pbjelly. Preparing to unpack .../36-pbjelly_15.8.24+dfsg-7_all.deb ... Unpacking pbjelly (15.8.24+dfsg-7) ... Selecting previously unselected package python3-pbbanana. Preparing to unpack .../37-python3-pbbanana_15.8.24+dfsg-7_all.deb ... Unpacking python3-pbbanana (15.8.24+dfsg-7) ... Selecting previously unselected package python3.12. Preparing to unpack .../38-python3.12_3.12.2-1_amd64.deb ... Unpacking python3.12 (3.12.2-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../39-python3-numpy_1%3a1.24.2-2_amd64.deb ... Unpacking python3-numpy (1:1.24.2-2) ... Selecting previously unselected package python3-h5py-serial. Preparing to unpack .../40-python3-h5py-serial_3.10.0-1_amd64.deb ... Unpacking python3-h5py-serial (3.10.0-1) ... Selecting previously unselected package python3-h5py. Preparing to unpack .../41-python3-h5py_3.10.0-1_all.deb ... Unpacking python3-h5py (3.10.0-1) ... Selecting previously unselected package python3-sortedcontainers. Preparing to unpack .../42-python3-sortedcontainers_2.4.0-2_all.deb ... Unpacking python3-sortedcontainers (2.4.0-2) ... Selecting previously unselected package python3-intervaltree. Preparing to unpack .../43-python3-intervaltree_3.0.2-1.1_all.deb ... Unpacking python3-intervaltree (3.0.2-1.1) ... Selecting previously unselected package python3-intervaltree-bio. Preparing to unpack .../44-python3-intervaltree-bio_1.0.1-4_all.deb ... Unpacking python3-intervaltree-bio (1.0.1-4) ... Selecting previously unselected package samtools. Preparing to unpack .../45-samtools_1.19.2-1_amd64.deb ... Unpacking samtools (1.19.2-1) ... Selecting previously unselected package pbhoney. Preparing to unpack .../46-pbhoney_15.8.24+dfsg-7_all.deb ... Unpacking pbhoney (15.8.24+dfsg-7) ... Selecting previously unselected package pbsuite. Preparing to unpack .../47-pbsuite_15.8.24+dfsg-7_all.deb ... Unpacking pbsuite (15.8.24+dfsg-7) ... Setting up libhtscodecs2:amd64 (1.6.0-1+b1) ... Setting up media-types (10.1.0) ... Setting up libkeyutils1:amd64 (1.6.3-3) ... Setting up libpsl5:amd64 (0.21.2-1+b1) ... Setting up libtirpc-common (1.3.4+ds-1) ... Setting up libbrotli1:amd64 (1.1.0-2+b3) ... Setting up libsqlite3-0:amd64 (3.45.1-1) ... Setting up libpython3.12-minimal:amd64 (3.12.2-1) ... Setting up libnghttp2-14:amd64 (1.59.0-1) ... Setting up libdeflate0:amd64 (1.19-1) ... Setting up libaec0:amd64 (1.1.2-1) ... Setting up libkrb5support0:amd64 (1.20.1-5+b1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-4+b1) ... Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:amd64 (6.4+20240113-1) ... Setting up liblzf1:amd64 (3.6-4) ... Setting up libncursesw6:amd64 (6.4+20240113-1) ... Setting up libk5crypto3:amd64 (1.20.1-5+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-4+b1) ... Setting up libgfortran5:amd64 (14-20240201-3) ... Setting up libssh2-1:amd64 (1.11.0-4) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.20.1-5+b1) ... Setting up readline-common (8.2-3) ... Setting up libsz2:amd64 (1.1.2-1) ... Setting up libpbcopper2.3.0:amd64 (2.3.0+dfsg-2) ... Setting up python3.12-minimal (3.12.2-1) ... Setting up liblapack3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libreadline8:amd64 (8.2-3+b1) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5+b3) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... Setting up libcurl4:amd64 (8.6.0-3) ... Setting up libtirpc3:amd64 (1.3.4+ds-1) ... Setting up libcurl3-gnutls:amd64 (8.6.0-3) ... Setting up libhdf5-103-1:amd64 (1.10.10+repack-3+b1) ... Setting up libnsl2:amd64 (1.3.0-3) ... Setting up libhdf5-cpp-103-1:amd64 (1.10.10+repack-3+b1) ... Setting up libhdf5-hl-100:amd64 (1.10.10+repack-3+b1) ... Setting up libhts3:amd64 (1.19+ds-1) ... Setting up libpython3.12-stdlib:amd64 (3.12.2-1) ... Setting up libpython3.11-stdlib:amd64 (3.11.8-1) ... Setting up python3.12 (3.12.2-1) ... Setting up libpbbam2.4.0:amd64 (2.4.0+dfsg-1+b2) ... Setting up samtools (1.19.2-1) ... Setting up libblasr5.3.5:amd64 (5.3.5+dfsg-6+b2) ... Setting up libpbseq:amd64 (5.3.5+dfsg-6+b2) ... Setting up libpython3-stdlib:amd64 (3.11.6-1) ... Setting up python3.11 (3.11.8-1) ... Setting up blasr (5.3.5+dfsg-6+b3) ... Setting up python3 (3.11.6-1) ... Setting up python3-sortedcontainers (2.4.0-2) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-pysam (0.22.0+ds-1+b1) ... Setting up python3-intervaltree (3.0.2-1.1) ... Setting up python3-pbsuite-utils (15.8.24+dfsg-7) ... /usr/lib/python3/dist-packages/pbsuite/utils/BamStat.py:75: SyntaxWarning: invalid escape sequence '\d' for i in re.findall("\d+|\^?[ATCGN]+", md): /usr/lib/python3/dist-packages/pbsuite/utils/FileHandlers.py:49: SyntaxWarning: invalid escape sequence '\s' splRE = re.compile("\s+") /usr/lib/python3/dist-packages/pbsuite/utils/FileHandlers.py:60: SyntaxWarning: invalid escape sequence '\s' splRE = re.compile("\s+") /usr/lib/python3/dist-packages/pbsuite/utils/FileHandlers.py:87: SyntaxWarning: invalid escape sequence '\s' self[key] = list(map(int, re.split("\s+", self[key].getvalue().strip()))) /usr/lib/python3/dist-packages/pbsuite/utils/FileHandlers.py:475: SyntaxWarning: invalid escape sequence '\d' subreadGrab = re.compile(".*/(\d+)_(\d+)$") /usr/lib/python3/dist-packages/pbsuite/utils/FileHandlers.py:499: SyntaxWarning: invalid escape sequence '\s' data = re.split("\s+",line) /usr/lib/python3/dist-packages/pbsuite/utils/FileHandlers.py:609: SyntaxWarning: invalid escape sequence '\s' data = re.split("\s+",line) /usr/lib/python3/dist-packages/pbsuite/utils/VCFIO.py:110: SyntaxWarning: invalid escape sequence '\s' METARE = re.compile(('##\s*(?P\w+)\s*=\s*\<\s*ID\s*=\s*(?P\w+)\s*' /usr/lib/python3/dist-packages/pbsuite/utils/VCFIO.py:111: SyntaxWarning: invalid escape sequence '\s' ',\s*(Number\s*=\s*(?P[0-9.])\s*,' /usr/lib/python3/dist-packages/pbsuite/utils/VCFIO.py:112: SyntaxWarning: invalid escape sequence '\s' '\s*Type\s*=\s*(?P\w+)\s*,)?' /usr/lib/python3/dist-packages/pbsuite/utils/VCFIO.py:113: SyntaxWarning: invalid escape sequence '\s' '\s*Description\s*=\s*"(?P.*)"\s*\>\s*'),\ /usr/lib/python3/dist-packages/pbsuite/utils/jellyoutputrename.py:22: SyntaxWarning: invalid escape sequence '\d' regex = re.compile("ref\d{7}") Setting up python3-networkx (2.8.8-1) ... /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_gml.py:556: SyntaxWarning: invalid octal escape sequence '\420' "graph [edge [ source u'u\4200' target u'u\4200' ] " /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_gml.py:557: SyntaxWarning: invalid octal escape sequence '\420' + "node [ id u'u\4200' label b ] ]" Setting up python3-numpy (1:1.24.2-2) ... Setting up python3-intervaltree-bio (1.0.1-4) ... Setting up pbjelly (15.8.24+dfsg-7) ... /usr/lib/python3/dist-packages/pbsuite/jelly/Extraction.py:59: SyntaxWarning: invalid escape sequence '\d' getSub = re.compile("(.*)##(\d+)#(\d+)##$") /usr/lib/python3/dist-packages/pbsuite/jelly/Extraction.py:326: SyntaxWarning: invalid escape sequence '\s' splRE = re.compile("\s+") /usr/lib/python3/dist-packages/pbsuite/jelly/Setup.py:16: SyntaxWarning: invalid escape sequence '\|' refParser = re.compile("(.*)\|(ref\d{7})/?(\d+)?$") /usr/lib/python3/dist-packages/pbsuite/jelly/Stages.py:82: SyntaxWarning: invalid escape sequence '\d' nprocRe = re.compile("--nproc (\d+)") /usr/lib/python3/dist-packages/pbsuite/jelly/m4pie.py:17: SyntaxWarning: invalid escape sequence '\d' """ /usr/lib/python3/dist-packages/pbsuite/jelly/m4pie.py:108: SyntaxWarning: invalid escape sequence '\d' datGrab = re.compile("^(?P\d+)(?P[pe])(?P\d+)__(?P.*)$") Setting up python3-h5py-serial (3.10.0-1) ... Setting up python3-pbbanana (15.8.24+dfsg-7) ... /usr/lib/python3/dist-packages/pbsuite/banana/MakeOverlapTable.py:10: SyntaxWarning: invalid escape sequence '\d' subreadGrab = re.compile(".*/(\d+)_(\d+)$") /usr/lib/python3/dist-packages/pbsuite/banana/MakeOverlapTable.py:26: SyntaxWarning: invalid escape sequence '\s' data = re.split("\s+",line) /usr/lib/python3/dist-packages/pbsuite/banana/MakeReciprocal.py:12: SyntaxWarning: invalid escape sequence '\d' subreadGrab = re.compile(".*/(\d+)_(\d+)$") /usr/lib/python3/dist-packages/pbsuite/banana/MakeReciprocal.py:36: SyntaxWarning: invalid escape sequence '\s' data = re.split("\s+",line) /usr/lib/python3/dist-packages/pbsuite/banana/OLCAssembly.py:277: SyntaxWarning: invalid escape sequence '\:' _exe("grep iid alignments.overlaps_realigned | cut -f2 -d\: > internal.ids") /usr/lib/python3/dist-packages/pbsuite/banana/OLCAssembly.py:304: SyntaxWarning: invalid escape sequence '\d' getContigName = re.compile("(\d+)_contig") /usr/lib/python3/dist-packages/pbsuite/banana/chunkyBlasr.py:123: SyntaxWarning: invalid escape sequence '\ ' "awk -F\ '{{if ($1 < 500) print $2}}' | " Setting up python3-h5py (3.10.0-1) ... Setting up pbhoney (15.8.24+dfsg-7) ... /usr/lib/python3/dist-packages/pbsuite/honey/Force.py:523: SyntaxWarning: invalid escape sequence '\?' forceRe = re.compile("(?PTrue|False|\?)\[(?P.*)\|(?P.*)\]") /usr/lib/python3/dist-packages/pbsuite/honey/bampie.py:85: SyntaxWarning: invalid escape sequence '\d' """ /usr/lib/python3/dist-packages/pbsuite/honey/bampie.py:166: SyntaxWarning: invalid escape sequence '\d' datGrab = re.compile("^(?P\d+)(?P[pe])(?P[01])(?P.*):(?P\d+)__(?P.*)$") /usr/lib/python3/dist-packages/pbsuite/honey/realign.py:199: SyntaxWarning: invalid escape sequence '\d' for i in re.findall("\d+|\^?[ATCGN]+", md): Setting up pbsuite (15.8.24+dfsg-7) ... Processing triggers for libc-bin (2.37-15) ... 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'apt-get', '-y', 'install', 'pbsuite=15.8.24+dfsg-7'] 0m35.5s INFO: Running scripts post_install 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/post_install_exceptions'] 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/post_install_exceptions'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/post_install_log_alternatives'] 0m35.5s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=python3: piuparts=pbsuite=15.8.24+dfsg-7: /usr/bin/update-alternatives --auto /usr/bin/python3 LOG-ALTERNATIVES: dpkg=libblas3: piuparts=pbsuite=15.8.24+dfsg-7: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so.3 libblas.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 10 LOG-ALTERNATIVES: dpkg=liblapack3: piuparts=pbsuite=15.8.24+dfsg-7: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so.3 liblapack.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 10 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/post_install_log_alternatives'] 0m35.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl'] 0m36.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl'] 0m37.2s DEBUG: No broken symlinks as far as we can find. 0m37.3s INFO: /bin converted to /usr/bin by /usr merge 0m37.3s INFO: /lib converted to /usr/lib by /usr merge 0m37.3s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m37.3s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m37.3s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m37.3s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m37.3s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m37.3s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m37.3s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m37.3s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m37.3s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m37.3s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m37.3s INFO: /sbin converted to /usr/sbin by /usr merge 0m37.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', '-ac', '--ignore-obsolete'] 0m38.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', '-ac', '--ignore-obsolete'] 0m38.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m38.9s DUMP: 0.15.6 0m38.9s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m38.9s INFO: Running adequate version 0.15.6 now. 0m38.9s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'pbsuite'] 0m39.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'pbsuite'] 0m39.1s INFO: Running scripts pre_remove 0m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m41.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m41.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_remove_exceptions'] 0m41.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/pre_remove_exceptions'] 0m41.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m41.2s DUMP: install ok installed apt apt 2.7.12 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed blasr blasr 5.3.5+dfsg-6+b3 install ok installed bsdutils bsdutils 1:2.39.3-6 install ok installed coreutils coreutils 9.4-3+b1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.16 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.4 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240201-3 install ok installed gpgv gpgv 2.2.40-1.1+b1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libaec0:amd64 libaec0 1.1.2-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.12 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2 install ok installed libblas3:amd64 libblas3 3.12.0-3 install ok installed libblasr5.3.5:amd64 libblasr5.3.5 5.3.5+dfsg-6+b2 install ok installed libblkid1:amd64 libblkid1 2.39.3-6 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b2 install ok installed libc-bin libc-bin 2.37-15 install ok installed libc6:amd64 libc6 2.37-15 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 8.6.0-3 install ok installed libcurl4:amd64 libcurl4 8.6.0-3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-4+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b1 install ok installed libdeflate0:amd64 libdeflate0 1.19-1 install ok installed libexpat1:amd64 libexpat1 2.6.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240201-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgfortran5:amd64 libgfortran5 14-20240201-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30:amd64 libgnutls30 3.8.3-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-5+b1 install ok installed libhdf5-103-1:amd64 libhdf5-103-1 1.10.10+repack-3+b1 install ok installed libhdf5-cpp-103-1:amd64 libhdf5-cpp-103-1 1.10.10+repack-3+b1 install ok installed libhdf5-hl-100:amd64 libhdf5-hl-100 1.10.10+repack-3+b1 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2+b1 install ok installed libhts3:amd64 libhts3 1.19+ds-1 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.6.0-1+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-5+b1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-5+b1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-5+b1 install ok installed liblapack3:amd64 liblapack3 3.12.0-3 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-5+b3 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzf1:amd64 liblzf1 3.6-4 install ok installed liblzma5:amd64 liblzma5 5.4.5-0.3 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.39.3-6 install ok installed libncurses6:amd64 libncurses6 6.4+20240113-1 install ok installed libncursesw6:amd64 libncursesw6 6.4+20240113-1 install ok installed libnettle8:amd64 libnettle8 3.9.1-2+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.59.0-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1+b1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1+b1 install ok installed libpbbam2.4.0:amd64 libpbbam2.4.0 2.4.0+dfsg-1+b2 install ok installed libpbcopper2.3.0:amd64 libpbcopper2.3.0 2.3.0+dfsg-2 install ok installed libpbseq:amd64 libpbseq 5.3.5+dfsg-6+b2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libpsl5:amd64 libpsl5 0.21.2-1+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.6-1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.8-1 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.8-1 install ok installed libpython3.12-minimal:amd64 libpython3.12-minimal 3.12.2-1 install ok installed libpython3.12-stdlib:amd64 libpython3.12-stdlib 3.12.2-1 install ok installed libreadline8:amd64 libreadline8 8.2-3+b1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-4+b1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b2 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-6 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.45.1-1 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssh2-1:amd64 libssh2-1 1.11.0-4 install ok installed libssl3:amd64 libssl3 3.1.5-1 install ok installed libstdc++6:amd64 libstdc++6 14-20240201-3 install ok installed libsystemd0:amd64 libsystemd0 255.3-2 install ok installed libsz2:amd64 libsz2 1.1.2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.4+ds-1 install ok installed libudev1:amd64 libudev1 255.3-2 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.3-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.39.3-6 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed netbase netbase 6.4 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed pbhoney pbhoney 15.8.24+dfsg-7 install ok installed pbjelly pbjelly 15.8.24+dfsg-7 install ok installed pbsuite pbsuite 15.8.24+dfsg-7 install ok installed perl-base perl-base 5.38.2-3 install ok installed python3 python3 3.11.6-1 install ok installed python3-h5py python3-h5py 3.10.0-1 install ok installed python3-h5py-serial python3-h5py-serial 3.10.0-1 install ok installed python3-intervaltree python3-intervaltree 3.0.2-1.1 install ok installed python3-intervaltree-bio python3-intervaltree-bio 1.0.1-4 install ok installed python3-minimal python3-minimal 3.11.6-1 install ok installed python3-networkx python3-networkx 2.8.8-1 install ok installed python3-numpy python3-numpy 1:1.24.2-2 install ok installed python3-pbbanana python3-pbbanana 15.8.24+dfsg-7 install ok installed python3-pbsuite-utils python3-pbsuite-utils 15.8.24+dfsg-7 install ok installed python3-pkg-resources python3-pkg-resources 68.1.2-2 install ok installed python3-pysam python3-pysam 0.22.0+ds-1+b1 install ok installed python3-sortedcontainers python3-sortedcontainers 2.4.0-2 install ok installed python3.11 python3.11 3.11.8-1 install ok installed python3.11-minimal python3.11-minimal 3.11.8-1 install ok installed python3.12 python3.12 3.12.2-1 install ok installed python3.12-minimal python3.12-minimal 3.12.2-1 install ok installed readline-common readline-common 8.2-3 install ok installed samtools samtools 1.19.2-1 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.08-6 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.39.3-6 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3+b1 0m41.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m41.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'apt-get', 'remove', 'blasr', 'libaec0:amd64', 'libblas3:amd64', 'libblasr5.3.5:amd64', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhdf5-cpp-103-1:amd64', 'libhdf5-hl-100:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.5-0:amd64', 'liblzf1:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libpbbam2.4.0:amd64', 'libpbcopper2.3.0:amd64', 'libpbseq:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'media-types', 'netbase', 'pbhoney', 'pbjelly', 'python3', 'python3-h5py', 'python3-h5py-serial', 'python3-intervaltree', 'python3-intervaltree-bio', 'python3-minimal', 'python3-networkx', 'python3-numpy', 'python3-pbbanana', 'python3-pbsuite-utils', 'python3-pkg-resources', 'python3-pysam', 'python3-sortedcontainers', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'readline-common', 'samtools', 'pbsuite'] 0m45.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: blasr libaec0 libblas3 libblasr5.3.5 libbrotli1 libcurl3-gnutls libcurl4 libdeflate0 libexpat1 libgfortran5 libgssapi-krb5-2 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-hl-100 libhts3 libhtscodecs2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.5-0 liblzf1 libncurses6 libncursesw6 libnghttp2-14 libnsl2 libpbbam2.4.0 libpbcopper2.3.0 libpbseq libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libsz2 libtirpc-common libtirpc3 media-types netbase pbhoney pbjelly pbsuite python3 python3-h5py python3-h5py-serial python3-intervaltree python3-intervaltree-bio python3-minimal python3-networkx python3-numpy python3-pbbanana python3-pbsuite-utils python3-pkg-resources python3-pysam python3-sortedcontainers python3.11 python3.11-minimal python3.12 python3.12-minimal readline-common samtools 0 upgraded, 0 newly installed, 69 to remove and 0 not upgraded. After this operation, 193 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9712 files and directories currently installed.) Removing pbsuite (15.8.24+dfsg-7) ... Removing pbhoney (15.8.24+dfsg-7) ... Removing python3-pbbanana (15.8.24+dfsg-7) ... Removing pbjelly (15.8.24+dfsg-7) ... Removing blasr (5.3.5+dfsg-6+b3) ... Removing libpbseq:amd64 (5.3.5+dfsg-6+b2) ... Removing libblasr5.3.5:amd64 (5.3.5+dfsg-6+b2) ... Removing python3-h5py (3.10.0-1) ... Removing python3-h5py-serial (3.10.0-1) ... Removing libhdf5-hl-100:amd64 (1.10.10+repack-3+b1) ... Removing python3-numpy (1:1.24.2-2) ... Removing liblapack3:amd64 (3.12.0-3) ... Removing libblas3:amd64 (3.12.0-3) ... Removing samtools (1.19.2-1) ... Removing python3.12 (3.12.2-1) ... Removing python3.12-minimal (3.12.2-1) ... Removing python3-pbsuite-utils (15.8.24+dfsg-7) ... Removing python3-pysam (0.22.0+ds-1+b1) ... Removing python3-intervaltree-bio (1.0.1-4) ... Removing python3-intervaltree (3.0.2-1.1) ... Removing python3-sortedcontainers (2.4.0-2) ... Removing libgfortran5:amd64 (14-20240201-3) ... Removing libpython3.12-stdlib:amd64 (3.12.2-1) ... Removing libhdf5-cpp-103-1:amd64 (1.10.10+repack-3+b1) ... Removing liblzf1:amd64 (3.6-4) ... Removing libncurses6:amd64 (6.4+20240113-1) ... Removing libpbbam2.4.0:amd64 (2.4.0+dfsg-1+b2) ... Removing libpbcopper2.3.0:amd64 (2.3.0+dfsg-2) ... Removing libpython3.12-minimal:amd64 (3.12.2-1) ... Removing python3-networkx (2.8.8-1) ... Removing python3-pkg-resources (68.1.2-2) ... Removing libhdf5-103-1:amd64 (1.10.10+repack-3+b1) ... Removing libsz2:amd64 (1.1.2-1) ... Removing libaec0:amd64 (1.1.2-1) ... Removing libcurl4:amd64 (8.6.0-3) ... Removing libhts3:amd64 (1.19+ds-1) ... Removing libcurl3-gnutls:amd64 (8.6.0-3) ... Removing libbrotli1:amd64 (1.1.0-2+b3) ... Removing libdeflate0:amd64 (1.19-1) ... Removing python3 (3.11.6-1) ... Removing python3.11 (3.11.8-1) ... Removing libpython3-stdlib:amd64 (3.11.6-1) ... Removing libpython3.11-stdlib:amd64 (3.11.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libhtscodecs2:amd64 (1.6.0-1+b1) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-5+b3) ... Removing libncursesw6:amd64 (6.4+20240113-1) ... Removing libnghttp2-14:amd64 (1.59.0-1) ... Removing libnsl2:amd64 (1.3.0-3) ... Removing libpsl5:amd64 (0.21.2-1+b1) ... Removing python3-minimal (3.11.6-1) ... Removing libreadline8:amd64 (8.2-3+b1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-4+b1) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-4+b1) ... Removing libsqlite3-0:amd64 (3.45.1-1) ... Removing libssh2-1:amd64 (1.11.0-4) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-3) ... Removing python3.11-minimal (3.11.8-1) ... Removing libexpat1:amd64 (2.6.0-1) ... Removing libtirpc3:amd64 (1.3.4+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... Removing libkrb5-3:amd64 (1.20.1-5+b1) ... Removing libk5crypto3:amd64 (1.20.1-5+b1) ... Removing libkeyutils1:amd64 (1.6.3-3) ... Removing libkrb5support0:amd64 (1.20.1-5+b1) ... Removing libpython3.11-minimal:amd64 (3.11.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libtirpc-common (1.3.4+ds-1) ... Processing triggers for libc-bin (2.37-15) ... 0m45.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'apt-get', 'remove', 'blasr', 'libaec0:amd64', 'libblas3:amd64', 'libblasr5.3.5:amd64', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhdf5-cpp-103-1:amd64', 'libhdf5-hl-100:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.5-0:amd64', 'liblzf1:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libpbbam2.4.0:amd64', 'libpbcopper2.3.0:amd64', 'libpbseq:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'media-types', 'netbase', 'pbhoney', 'pbjelly', 'python3', 'python3-h5py', 'python3-h5py-serial', 'python3-intervaltree', 'python3-intervaltree-bio', 'python3-minimal', 'python3-networkx', 'python3-numpy', 'python3-pbbanana', 'python3-pbsuite-utils', 'python3-pkg-resources', 'python3-pysam', 'python3-sortedcontainers', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'readline-common', 'samtools', 'pbsuite'] 0m45.4s INFO: Running scripts post_remove 0m45.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/post_remove_exceptions'] 0m45.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/post_remove_exceptions'] 0m45.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'dpkg', '--purge', 'blasr', 'libaec0:amd64', 'libblas3:amd64', 'libblasr5.3.5:amd64', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhdf5-cpp-103-1:amd64', 'libhdf5-hl-100:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.5-0:amd64', 'liblzf1:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libpbbam2.4.0:amd64', 'libpbcopper2.3.0:amd64', 'libpbseq:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'media-types', 'netbase', 'pbhoney', 'pbjelly', 'python3', 'python3-h5py', 'python3-h5py-serial', 'python3-intervaltree', 'python3-intervaltree-bio', 'python3-minimal', 'python3-networkx', 'python3-numpy', 'python3-pbbanana', 'python3-pbsuite-utils', 'python3-pkg-resources', 'python3-pysam', 'python3-sortedcontainers', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'readline-common', 'samtools'] 0m45.5s DUMP: dpkg: warning: ignoring request to remove blasr which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libblasr5.3.5 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed (Reading database ... 5237 files and directories currently installed.) Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... dpkg: warning: ignoring request to remove libhdf5-103-1 which isn't installed dpkg: warning: ignoring request to remove libhdf5-cpp-103-1 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-100 which isn't installed dpkg: warning: ignoring request to remove libhts3 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblzf1 which isn't installed dpkg: warning: ignoring request to remove libncurses6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libpbbam2.4.0 which isn't installed dpkg: warning: ignoring request to remove libpbcopper2.3.0 which isn't installed dpkg: warning: ignoring request to remove libpbseq which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.8-1) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed Purging configuration files for libpython3.12-minimal:amd64 (3.12.2-1) ... dpkg: warning: ignoring request to remove libpython3.12-stdlib which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed Purging configuration files for libtirpc-common (1.3.4+ds-1) ... dpkg: warning: ignoring request to remove libtirpc3 which isn't installed Purging configuration files for media-types (10.1.0) ... Purging configuration files for netbase (6.4) ... dpkg: warning: ignoring request to remove pbhoney which isn't installed dpkg: warning: ignoring request to remove pbjelly which isn't installed Purging configuration files for python3 (3.11.6-1) ... dpkg: warning: ignoring request to remove python3-h5py which isn't installed dpkg: warning: ignoring request to remove python3-h5py-serial which isn't installed dpkg: warning: ignoring request to remove python3-intervaltree which isn't installed dpkg: warning: ignoring request to remove python3-intervaltree-bio which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-pbbanana which isn't installed dpkg: warning: ignoring request to remove python3-pbsuite-utils which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-pysam which isn't installed dpkg: warning: ignoring request to remove python3-sortedcontainers which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed Purging configuration files for python3.11-minimal (3.11.8-1) ... dpkg: warning: ignoring request to remove python3.12 which isn't installed Purging configuration files for python3.12-minimal (3.12.2-1) ... Purging configuration files for readline-common (8.2-3) ... dpkg: warning: ignoring request to remove samtools which isn't installed 0m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'dpkg', '--purge', 'blasr', 'libaec0:amd64', 'libblas3:amd64', 'libblasr5.3.5:amd64', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1:amd64', 'libhdf5-cpp-103-1:amd64', 'libhdf5-hl-100:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-2.5-0:amd64', 'liblzf1:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libpbbam2.4.0:amd64', 'libpbcopper2.3.0:amd64', 'libpbseq:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'media-types', 'netbase', 'pbhoney', 'pbjelly', 'python3', 'python3-h5py', 'python3-h5py-serial', 'python3-intervaltree', 'python3-intervaltree-bio', 'python3-minimal', 'python3-networkx', 'python3-numpy', 'python3-pbbanana', 'python3-pbsuite-utils', 'python3-pkg-resources', 'python3-pysam', 'python3-sortedcontainers', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'readline-common', 'samtools'] 0m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'dpkg', '--purge', 'pbsuite'] 0m45.5s DUMP: dpkg: warning: ignoring request to remove pbsuite which isn't installed 0m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'dpkg', '--purge', 'pbsuite'] 0m45.5s INFO: Running scripts post_purge 0m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/post_purge_exceptions'] 0m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/post_purge_exceptions'] 0m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'dpkg', '--purge', '--pending'] 0m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'dpkg', '--purge', '--pending'] 0m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'dpkg', '--remove', '--pending'] 0m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'dpkg', '--remove', '--pending'] 0m45.5s INFO: Running scripts post_test 0m45.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/post_test_exceptions'] 0m45.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'tmp/scripts/post_test_exceptions'] 0m45.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl'] 0m45.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl'] 0m46.2s DEBUG: No broken symlinks as far as we can find. 0m46.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'dpkg-divert', '--list'] 0m46.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 0m46.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'dpkg-divert', '--list'] 0m46.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'apt-get', 'clean'] 0m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl', 'apt-get', 'clean'] 0m46.3s DEBUG: Recording chroot state 0m46.7s INFO: PASS: Installation and purging test. 0m47.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl/dev/shm'] 0m47.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl/dev/shm'] 0m47.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl/dev/console'] 0m47.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl/dev/console'] 0m47.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl/dev/ptmx'] 0m47.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl/dev/ptmx'] 0m47.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl/dev/pts'] 0m47.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl/dev/pts'] 0m47.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl/proc'] 0m47.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl/proc'] 0m47.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl'] 0m47.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp2m8iyoyl'] 0m47.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp2m8iyoyl 0m47.2s INFO: PASS: All tests. 0m47.2s INFO: piuparts run ends. ret=0 End: 2024-02-25 05:10:28 GMT