Start: 2026-10-19 18:43:23 GMT Package: pigx-rnaseq Version: 0.1.1-4 Installed-Size: 175 Maintainer: Debian Med Packaging Team Architecture: all Depends: fastp, fastqc, hisat2 | rna-star, libjs-jquery-datatables, libjs-jquery-tablesorter, megadepth, multiqc, python3:any, python3-deeptools, python3-htseq, r-bioc-deseq2, r-bioc-genomeinfodb, r-bioc-rtracklayer, r-bioc-summarizedexperiment, r-bioc-tximport, r-cran-corrplot, r-cran-crosstalk, r-cran-data.table, r-cran-dt, r-cran-ggplot2, r-cran-ggpubr, r-cran-ggrepel, r-cran-gprofiler2, r-cran-pheatmap, r-cran-plotly, r-cran-reshape2, r-cran-rjson, r-cran-rlang, r-cran-rmarkdown, r-cran-scales, salmon, samtools, snakemake, trim-galore Description: pipeline for checkpointed and distributed RNA-seq analyses Homepage: https://github.com/BIMSBbioinfo/pigx_rnaseq Commands: pigx-rnaseq Description-md5: e48b7ff1eb2b189a5bedb2ce0c32035c Section: science Priority: optional Filename: pool/main/p/pigx-rnaseq/pigx-rnaseq_0.1.1-4_all.deb Size: 61108 MD5sum: 137a798063d2f70f449eabae8bfd75db SHA256: c7ab8fb8c229d94a607903467e642c7d78fad7db37cfcb68b0c3171791dc19cd Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt pigx-rnaseq=0.1.1-4 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202608291514~1.6.0-23-g1172a6e5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt pigx-rnaseq=0.1.1-4 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 6.12.113+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.113-1 (2026-10-15) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpl1xuuxiy 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpl1xuuxiy 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.7s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.7s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy/proc'] 0m0.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy/proc'] 0m0.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy/dev/pts'] 0m0.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy/dev/pts'] 0m0.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy/dev/ptmx'] 0m0.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy/dev/ptmx'] 0m0.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/8', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy/dev/console'] 0m0.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/8', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy/dev/console'] 0m0.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy/dev/shm'] 0m0.7s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy/dev/shm'] 0m0.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.7s DEBUG: Created policy-rc.d and chmodded it. 0m0.7s DEBUG: Created resolv.conf. 0m0.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmpl1xuuxiy/tmp/scripts/ 0m0.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpl1xuuxiy/tmp/scripts/ 0m0.7s INFO: Running scripts post_chroot_unpack 0m0.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'apt-get', 'update'] 0m4.7s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.8 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7740 kB] Fetched 18.7 MB in 3s (6219 kB/s) Reading package lists... 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'apt-get', 'update'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'apt-get', '-yf', 'dist-upgrade'] 0m5.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'apt-get', '-yf', 'dist-upgrade'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.7s DUMP: 5575dda894b675aae760eb32fab94c57 - 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m5.7s INFO: Running scripts post_setup 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/post_setup_dummy_users'] 0m6.5s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/post_setup_dummy_users'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/post_setup_forbid_home'] 0m6.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/post_setup_forbid_home'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/post_setup_minimize'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/post_setup_minimize'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/post_setup_zz_backports'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/post_setup_zz_backports'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'apt-get', 'clean'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'apt-get', 'clean'] 0m6.5s DEBUG: Recording chroot state 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.2s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.2.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.2.1-1 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-7 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-7 install ok installed libc6:amd64 libc6 2.43-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3.1 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2.1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libssl3t64:amd64 libssl3t64 3.6.5-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 262.1-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262.1-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.3-1 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed mount mount 2.42.4-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed passwd passwd 1:4.20.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026e-1 install ok installed util-linux util-linux 2.42.4-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'dpkg-divert', '--list'] 0m7.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'dpkg-divert', '--list'] 0m7.2s INFO: Running scripts is_testable 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/is_testable_uninstallable'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/is_testable_uninstallable'] 0m7.2s INFO: apt-cache does not know about any of the requested packages 0m7.2s INFO: Running scripts pre_test 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_test_exceptions'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_test_exceptions'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_test_root_password'] 0m7.2s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_test_root_password'] 0m7.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy'] 0m7.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy'] 0m7.9s DEBUG: No broken symlinks as far as we can find. 0m7.9s INFO: Running scripts pre_install 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_install_database-server'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_install_database-server'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_install_exceptions'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_install_exceptions'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_install_extras'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_install_extras'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_install_log_alternatives'] 0m8.0s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' dpkg-divert: warning: diverting file '/usr/bin/update-alternatives' from an Essential package with rename is dangerous, use --no-rename 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_install_log_alternatives'] 0m8.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy'] 0m8.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy'] 0m8.7s DEBUG: No broken symlinks as far as we can find. 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'apt-cache', 'policy'] 0m9.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'apt-cache', 'policy'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'apt-cache', 'policy', 'pigx-rnaseq'] 0m9.7s DUMP: pigx-rnaseq: Installed: (none) Candidate: 0.1.1-4 Version table: 0.1.1-4 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'apt-cache', 'policy', 'pigx-rnaseq'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'apt-get', '-y', 'install', 'pigx-rnaseq=0.1.1-4'] 6m8.0s DUMP: Reading package lists... Building dependency tree... Solving dependencies... The following additional packages will be installed: adwaita-icon-theme at-spi2-common binutils binutils-common binutils-x86-64-linux-gnu bubblewrap build-essential bzip2 ca-certificates ca-certificates-java coinor-cbc coinor-libcbc3.1 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 cpp cpp-16 cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu cutadapt dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service default-jre default-jre-headless docutils-common dpkg-dev fastp fastqc fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-font-awesome-legacy fonts-glyphicons-halflings fonts-lyx fonts-mathjax g++ g++-16 g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-16 gcc-16-x86-64-linux-gnu gcc-x86-64-linux-gnu git git-man glycin-loaders glycin-thumbnailers gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme hisat2 java-common javascript-common junit4 libabsl20260526 libaom3 libapache-pom-java libapparmor1 libasan8 libasound2-data libasound2t64 libatk-bridge2.0-0t64 libatk1.0-0t64 libatomic1 libatspi2.0-0t64 libavahi-client3 libavahi-common-data libavahi-common3 libavif16 libbigwig0t64 libbinutils libblas3 libboost-dev libboost-filesystem1.92.0 libboost-iostreams1.92.0 libboost-program-options1.92.0 libboost-regex1.92-dev libboost-regex1.92.0 libboost1.92-dev libbrotli1 libc-dev-bin libc6-dev libcairo-gobject2 libcairo2 libcap2 libcc1-0 libcloudproviders0 libcolord2 libcom-err2 libcommons-beanutils-java libcommons-codec-java libcommons-collections3-java libcommons-collections4-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java libcommons-math3-java libcommons-parent-java libctf-nobfd0 libctf0 libcups2t64 libcurl3t64-gnutls libcurl4-gnutls libcurl4t64 libdatrie1 libdav1d7 libdbus-1-3 libdconf1 libde265-0 libdeflate0 libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm2 libedit2 libelf1t64 libepoxy0 liberror-perl libexpat1 libezmorph-java libffi8 libfindbin-libs-perl libfontconfig1 libfreetype6 libfribidi0 libgav1-2 libgbm1 libgcc-16-dev libgcrypt20 libgdbm-compat4t64 libgdbm6t64 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libgif7 libgl1 libgl1-mesa-dri libglib2.0-0t64 libglvnd0 libglx-mesa0 libglx0 libglycin-2-0 libgnutls30t64 libgomp1 libgpg-error0 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libgtk-3-0t64 libgtk-3-common libhamcrest-java libharfbuzz-subset0 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhts3t64 libhtscodecs2 libhtsjdk-java libhwasan0 libhwloc15 libhwy1t64 libice6 libicu78 libidn2-0 libimagequant0 libisal2 libisl23 libitm1 libjansson4 libjaxen-java libjbig0 libjbzip2-java libjemalloc2 libjpeg62-turbo libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libjs-jquery-metadata libjs-jquery-selectize.js libjs-jquery-tablesorter libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-sphinxdoc libjs-twitter-bootstrap-datepicker libjson-java libjson-perl libjxl0.11 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap2 liblerc4 libllvm22 liblog4j1.2-java liblsan0 liblua5.4-0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libmpc3 libmpfr6 libncbi-ngs3 libncbi-vdb3 libncurses6 libncursesw6 libnghttp2-14 libnghttp3-9 libngs-java libngs-jni libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libnlopt1 libnspr4 libnss3 libnuma1 libopenjp2-7 libp11-kit0 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpciaccess0 libpcsclite1 libperl5.42 libpixman-1-0 libpng16-16t64 libproc2-1 libpsl5t64 libpython3-stdlib libpython3.14 libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 libquadmath0 libraqm0 librav1e0.8 libreadline8t64 librhino-java librsvg2-2 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsframe3 libsharpyuv0 libslf4j-java libsm6 libsnappy-java libsnappy-jni libsnappy1v5 libsqlite3-0 libssh2-1t64 libstaden-read14t64 libstdc++-16-dev libsvtav1enc4 libsystemd-shared libtasn1-6 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libvulkan1 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxerces2-java libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon0 libxml-commons-external-java libxml-commons-resolver1.1-java libxml2-16 libxom-java libxrandr2 libxrender1 libxres1 libxshmfence1 libxslt1.1 libxss1 libxt6t64 libxtst6 libxxf86vm1 libyaml-0-2 libyuv0 libz3-4 libzopfli1 linux-libc-dev make media-types megadepth mesa-libgallium multiqc ncbi-vdb-data netbase node-bootstrap-sass node-html5shiv node-normalize.css openjdk-25-jre openjdk-25-jre-headless openssl pandoc pandoc-data patch pci.ids perl perl-modules-5.42 pigz procps python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-attr python3-babel python3-brotli python3-certifi python3-chardet python3-charset-normalizer python3-click python3-coloredlogs python3-colormath python3-configargparse python3-connection-pool python3-contourpy python3-cutadapt python3-cycler python3-dateutil python3-datrie python3-decorator python3-deeptools python3-deeptoolsintervals python3-defusedxml python3-dnaio python3-docutils python3-dpath python3-fastjsonschema python3-fonttools python3-git python3-gitdb python3-htseq python3-humanfriendly python3-humanize python3-idna python3-imagesize python3-jinja2 python3-jsonschema python3-jsonschema-specifications python3-jupyter-core python3-kiwisolver python3-linkify-it python3-lxml python3-lz4 python3-lzstring python3-markdown python3-markdown-it python3-markupsafe python3-matplotlib python3-mdurl python3-minimal python3-mpmath python3-nbformat python3-networkx python3-numpy python3-numpy-dev python3-numpydoc python3-packaging python3-pil python3-pil.imagetk python3-plac python3-platformdirs python3-plotly python3-psutil python3-pulp python3-py2bit python3-pyaml-env python3-pybigwig python3-pygments python3-pyparsing python3-pysam python3-pytz python3-referencing python3-requests python3-retry python3-rich python3-rich-click python3-roman-numerals python3-rpds-py python3-scipy python3-smart-open python3-smmap python3-snowballstemmer python3-spectra python3-sphinx python3-stopit python3-sympy python3-tabulate python3-tenacity python3-throttler python3-tk python3-toposort python3-traitlets python3-uc-micro python3-ufolib2 python3-uharfbuzz python3-urllib3 python3-wrapt python3-xopen python3-yaml python3-yte python3-zopfli python3.14 python3.14-minimal python3.14-tk r-base-core r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings r-bioc-cigarillo r-bioc-delayedarray r-bioc-deseq2 r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-seqinfo r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-tximport r-bioc-ucsc.utils r-bioc-xvector r-cran-abind r-cran-askpass r-cran-backports r-cran-base64enc r-cran-bh r-cran-bitops r-cran-boot r-cran-broom r-cran-bslib r-cran-cachem r-cran-car r-cran-cardata r-cran-caret r-cran-class r-cran-cli r-cran-clock r-cran-codetools r-cran-colorspace r-cran-colourpicker r-cran-commonmark r-cran-conquer r-cran-corrplot r-cran-cowplot r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-deriv r-cran-diagram r-cran-digest r-cran-doby r-cran-dplyr r-cran-dt r-cran-e1071 r-cran-evaluate r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-foreach r-cran-forecast r-cran-formatr r-cran-formula r-cran-fracdiff r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-future r-cran-future.apply r-cran-generics r-cran-ggplot2 r-cran-ggpubr r-cran-ggrepel r-cran-ggsci r-cran-ggsignif r-cran-globals r-cran-glue r-cran-gower r-cran-gprofiler2 r-cran-gridextra r-cran-gtable r-cran-hardhat r-cran-highr r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-ipred r-cran-isoband r-cran-iterators r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lava r-cran-lazyeval r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lme4 r-cran-lmtest r-cran-locfit r-cran-lubridate r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixmodels r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-microbenchmark r-cran-mime r-cran-miniui r-cran-minqa r-cran-modelmetrics r-cran-modelr r-cran-nlme r-cran-nloptr r-cran-nnet r-cran-numderiv r-cran-openssl r-cran-otel r-cran-parallelly r-cran-pbkrtest r-cran-pheatmap r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plotly r-cran-plyr r-cran-polynom r-cran-proc r-cran-prodlim r-cran-progressr r-cran-promises r-cran-proxy r-cran-purrr r-cran-quantreg r-cran-r6 r-cran-rappdirs r-cran-rbibutils r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcurl r-cran-rdpack r-cran-recipes r-cran-reformulas r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart r-cran-rstatix r-cran-s7 r-cran-sass r-cran-scales r-cran-shape r-cran-shiny r-cran-shinyjs r-cran-snow r-cran-sourcetools r-cran-sparsem r-cran-sparsevctrs r-cran-squarem r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-timechange r-cran-timedate r-cran-tinytex r-cran-tzdb r-cran-urca r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml r-cran-zoo r-pkg-team-core-architecture readline-common salmon samtools sensible-utils sgml-base shared-mime-info snakemake sphinx-common systemd systemd-sysv trim-galore ucf unicode-data unzip user-session-migration x11-common xdg-utils xkb-data xml-core xz-utils zip Suggested packages: adwaita-icon-theme-legacy binutils-doc gprofng-gui binutils-gold bzip2-doc cpp-doc gcc-16-locales cpp-16-doc debian-keyring debian-tag2upload-keyring node-fortawesome-fontawesome-free g++-multilib g++-16-multilib gcc-16-doc gcc-multilib manpages-dev autoconf automake libtool flex bison gdb gcc-doc gcc-16-multilib gdb-x86-64-linux-gnu gettext-base git-doc git-email git-gui gitk gitweb git-cvs git-svn libheif-plugin-x265 | libheif-plugin-kvazaar apache2 | lighttpd | httpd alsa-utils libasound2-plugins libboost-doc libboost1.92-doc libboost-atomic1.92-dev libboost-cobalt1.92-dev libboost-chrono1.92-dev libboost-container1.92-dev libboost-context1.92-dev libboost-contract1.92-dev libboost-coroutine1.92-dev libboost-date-time1.92-dev libboost-exception1.92-dev libboost-fiber1.92-dev libboost-filesystem1.92-dev libboost-graph-parallel1.92-dev libboost-graph1.92-dev libboost-iostreams1.92-dev libboost-json1.92-dev libboost-locale1.92-dev libboost-log1.92-dev libboost-math1.92-dev libboost-mpi-python1.92-dev libboost-mpi1.92-dev libboost-nowide1.92-dev libboost-numpy1.92-dev libboost-program-options1.92-dev libboost-python1.92-dev libboost-random1.92-dev libboost-serialization1.92-dev libboost-stacktrace1.92-dev libboost-test1.92-dev libboost-thread1.92-dev libboost-timer1.92-dev libboost-type-erasure1.92-dev libboost-url1.92-dev libboost-wave1.92-dev libboost1.92-tools-dev libmpfrc++-dev libntl-dev libc-devtools glibc-doc colord libasm-java libxz-java libavalon-framework-java libexcalibur-logkit-java cups-common sq | sqop | rsop | gosop | hopenpgp-tools | pgpainless-cli | gpg-sq | gnupg bzr rng-tools gdbm-l10n low-memory-monitor gnutls-bin krb5-doc krb5-user gvfs libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc picard-tools libhwloc-contrib-plugins libdom4j-java libjdom1-java libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblcms2-utils liblog4j1.2-java-doc libmail-java libngs-java-doc pcscd rhino librsvg2-bin lm-sensors libstdc++-16-doc libarchive13t64 libbpf1 libcryptsetup12 libdw1t64 libfdisk1 libfido2-1 libkmod2 libmicrohttpd12t64 libpwquality1 libqrencode4 libtss2-esys-3.0.2-0t64 libtss2-mu-4.0.1-0t64 libtss2-rc0t64 libtss2-tcti-device0t64 tcl8.6 tk8.6 libxerces2-java-doc libxml-commons-resolver1.1-java-doc make-doc r-bioc-megadepth nodejs libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic citation-style-language-styles context ghc groff libjs-katex pandoc-citeproc php ruby texlive-latex-extra texlive-latex-recommended texlive-luatex texlive-xetex wkhtmltopdf ed diffutils-doc perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl python3-doc python3-venv python-attr-doc python-charset-normalizer-doc python-cycler-doc python-python-deeptoolsintervals-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base python-fastjsonschema-doc python-git-doc python-jinja2-doc python-jsonschema-doc python-jupyter-core-doc python3-pip python-lxml-doc python-markdown-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 gir1.2-gtk-4.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt6 python3-sip python3-tornado texlive-extra-utils python-mpmath-doc python3-gmpy2 gfortran python-numpy-doc python3-dev python3-pytest python-pil-doc python3-pandas python3-ipykernel python-pygments-doc ttf-bitstream-vera python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python3-azure python3-azure-storage python3-stemmer dvisvgm fonts-freefont-otf imagemagick latexmk node-mathjax-full python3-sphinx-rtd-theme sphinx-doc tex-gyre texlive-fonts-extra texlive-fonts-recommended texlive-plain-generic python-sympy-doc python-tenacity-doc blt tix python-traitlets-doc python3.14-venv python3.14-doc binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-testthat r-bioc-biocstyle r-cran-effects r-cran-leaps r-cran-ordinal r-cran-plotrix r-cran-mvtnorm r-cran-rgl r-cran-rio r-cran-sandwich r-cran-survey r-cran-getopt r-cran-multcomp r-cran-runit r-cran-inline r-cran-tinytest r-cran-rmpi r-cran-rlecuyer readline-doc cwltool sgml-base-doc slurm-client snakemake-doc systemd-container systemd-homed systemd-imds systemd-userdbd systemd-boot systemd-report systemd-resolved systemd-repart polkitd debhelper Recommended packages: librsvg2-common fakeroot sq | sqop | rsop | gosop | hopenpgp-tools | pgpainless-cli | gpg-sq | gnupg libalgorithm-merge-perl less ssh-client libheif-plugin-aomenc | libheif-plugin-rav1e | libheif-plugin-svtenc python3-gi python3-hisat2 bcftools alsa-ucm-conf alsa-topology-conf at-spi2-core curl manpages manpages-dev libfile-fcntllock-perl liblocale-gettext-perl libglib2.0-data xdg-user-dirs libgpg-error-l10n ibus-gtk3 libgtk-3-bin libheif-plugin-x265 libheif-plugin-aomenc libhwloc-plugins node-jquery libjson-xs-perl krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules mesa-vulkan-drivers | vulkan-icd libjs-filesaver node-clipboard texlive-xetex libatk-wrapper-java-jni fonts-dejavu-extra psmisc linux-sysctl-defaults python3-skia-pathops python3-fqdn python3-isoduration python3-json-pointer python3-rfc3339-validator python3-rfc3986-validator python3-rfc3987 python3-uritemplate python3-webcolors python3-bs4 python3-cssselect python3-html5lib python3-gdal python3-pydot python3-pygraphviz python3-olefile python3-pooch python3-boto3 python3-paramiko isympy-common python3-isal r-recommended r-base-dev r-doc-html w3m | www-browser node-highlight.js r-cran-maps r-cran-hexbin r-cran-ggthemes r-cran-ggally r-cran-ggalluvial r-cran-testthat r-cran-cairo r-cran-webshot r-cran-dendextend r-cran-sf r-cran-png r-cran-irdisplay r-cran-processx r-cran-forcats r-cran-palmerpenguins r-cran-rversions r-cran-reticulate r-cran-rsvg r-cran-ggridges cwltool imagemagick python3-yappi python3-azure-storage python3-biopython python3-botocore python3-dropbox python3-flask python3-ftputil python3-irodsclient python3-kubernetes systemd-timesyncd | time-daemon systemd-tpm systemd-cryptsetup libbpf1 libcryptsetup12 libkmod2 libnss-systemd libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: adwaita-icon-theme at-spi2-common binutils binutils-common binutils-x86-64-linux-gnu bubblewrap build-essential bzip2 ca-certificates ca-certificates-java coinor-cbc coinor-libcbc3.1 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 cpp cpp-16 cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu cutadapt dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service default-jre default-jre-headless docutils-common dpkg-dev fastp fastqc fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-font-awesome-legacy fonts-glyphicons-halflings fonts-lyx fonts-mathjax g++ g++-16 g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-16 gcc-16-x86-64-linux-gnu gcc-x86-64-linux-gnu git git-man glycin-loaders glycin-thumbnailers gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme hisat2 java-common javascript-common junit4 libabsl20260526 libaom3 libapache-pom-java libapparmor1 libasan8 libasound2-data libasound2t64 libatk-bridge2.0-0t64 libatk1.0-0t64 libatomic1 libatspi2.0-0t64 libavahi-client3 libavahi-common-data libavahi-common3 libavif16 libbigwig0t64 libbinutils libblas3 libboost-dev libboost-filesystem1.92.0 libboost-iostreams1.92.0 libboost-program-options1.92.0 libboost-regex1.92-dev libboost-regex1.92.0 libboost1.92-dev libbrotli1 libc-dev-bin libc6-dev libcairo-gobject2 libcairo2 libcap2 libcc1-0 libcloudproviders0 libcolord2 libcom-err2 libcommons-beanutils-java libcommons-codec-java libcommons-collections3-java libcommons-collections4-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java libcommons-math3-java libcommons-parent-java libctf-nobfd0 libctf0 libcups2t64 libcurl3t64-gnutls libcurl4-gnutls libcurl4t64 libdatrie1 libdav1d7 libdbus-1-3 libdconf1 libde265-0 libdeflate0 libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm2 libedit2 libelf1t64 libepoxy0 liberror-perl libexpat1 libezmorph-java libffi8 libfindbin-libs-perl libfontconfig1 libfreetype6 libfribidi0 libgav1-2 libgbm1 libgcc-16-dev libgcrypt20 libgdbm-compat4t64 libgdbm6t64 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libgif7 libgl1 libgl1-mesa-dri libglib2.0-0t64 libglvnd0 libglx-mesa0 libglx0 libglycin-2-0 libgnutls30t64 libgomp1 libgpg-error0 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libgtk-3-0t64 libgtk-3-common libhamcrest-java libharfbuzz-subset0 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhts3t64 libhtscodecs2 libhtsjdk-java libhwasan0 libhwloc15 libhwy1t64 libice6 libicu78 libidn2-0 libimagequant0 libisal2 libisl23 libitm1 libjansson4 libjaxen-java libjbig0 libjbzip2-java libjemalloc2 libjpeg62-turbo libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libjs-jquery-metadata libjs-jquery-selectize.js libjs-jquery-tablesorter libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-sphinxdoc libjs-twitter-bootstrap-datepicker libjson-java libjson-perl libjxl0.11 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap2 liblerc4 libllvm22 liblog4j1.2-java liblsan0 liblua5.4-0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libmpc3 libmpfr6 libncbi-ngs3 libncbi-vdb3 libncurses6 libncursesw6 libnghttp2-14 libnghttp3-9 libngs-java libngs-jni libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libnlopt1 libnspr4 libnss3 libnuma1 libopenjp2-7 libp11-kit0 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpciaccess0 libpcsclite1 libperl5.42 libpixman-1-0 libpng16-16t64 libproc2-1 libpsl5t64 libpython3-stdlib libpython3.14 libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 libquadmath0 libraqm0 librav1e0.8 libreadline8t64 librhino-java librsvg2-2 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsframe3 libsharpyuv0 libslf4j-java libsm6 libsnappy-java libsnappy-jni libsnappy1v5 libsqlite3-0 libssh2-1t64 libstaden-read14t64 libstdc++-16-dev libsvtav1enc4 libsystemd-shared libtasn1-6 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libvulkan1 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxerces2-java libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon0 libxml-commons-external-java libxml-commons-resolver1.1-java libxml2-16 libxom-java libxrandr2 libxrender1 libxres1 libxshmfence1 libxslt1.1 libxss1 libxt6t64 libxtst6 libxxf86vm1 libyaml-0-2 libyuv0 libz3-4 libzopfli1 linux-libc-dev make media-types megadepth mesa-libgallium multiqc ncbi-vdb-data netbase node-bootstrap-sass node-html5shiv node-normalize.css openjdk-25-jre openjdk-25-jre-headless openssl pandoc pandoc-data patch pci.ids perl perl-modules-5.42 pigx-rnaseq pigz procps python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-attr python3-babel python3-brotli python3-certifi python3-chardet python3-charset-normalizer python3-click python3-coloredlogs python3-colormath python3-configargparse python3-connection-pool python3-contourpy python3-cutadapt python3-cycler python3-dateutil python3-datrie python3-decorator python3-deeptools python3-deeptoolsintervals python3-defusedxml python3-dnaio python3-docutils python3-dpath python3-fastjsonschema python3-fonttools python3-git python3-gitdb python3-htseq python3-humanfriendly python3-humanize python3-idna python3-imagesize python3-jinja2 python3-jsonschema python3-jsonschema-specifications python3-jupyter-core python3-kiwisolver python3-linkify-it python3-lxml python3-lz4 python3-lzstring python3-markdown python3-markdown-it python3-markupsafe python3-matplotlib python3-mdurl python3-minimal python3-mpmath python3-nbformat python3-networkx python3-numpy python3-numpy-dev python3-numpydoc python3-packaging python3-pil python3-pil.imagetk python3-plac python3-platformdirs python3-plotly python3-psutil python3-pulp python3-py2bit python3-pyaml-env python3-pybigwig python3-pygments python3-pyparsing python3-pysam python3-pytz python3-referencing python3-requests python3-retry python3-rich python3-rich-click python3-roman-numerals python3-rpds-py python3-scipy python3-smart-open python3-smmap python3-snowballstemmer python3-spectra python3-sphinx python3-stopit python3-sympy python3-tabulate python3-tenacity python3-throttler python3-tk python3-toposort python3-traitlets python3-uc-micro python3-ufolib2 python3-uharfbuzz python3-urllib3 python3-wrapt python3-xopen python3-yaml python3-yte python3-zopfli python3.14 python3.14-minimal python3.14-tk r-base-core r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings r-bioc-cigarillo r-bioc-delayedarray r-bioc-deseq2 r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-seqinfo r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-tximport r-bioc-ucsc.utils r-bioc-xvector r-cran-abind r-cran-askpass r-cran-backports r-cran-base64enc r-cran-bh r-cran-bitops r-cran-boot r-cran-broom r-cran-bslib r-cran-cachem r-cran-car r-cran-cardata r-cran-caret r-cran-class r-cran-cli r-cran-clock r-cran-codetools r-cran-colorspace r-cran-colourpicker r-cran-commonmark r-cran-conquer r-cran-corrplot r-cran-cowplot r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-deriv r-cran-diagram r-cran-digest r-cran-doby r-cran-dplyr r-cran-dt r-cran-e1071 r-cran-evaluate r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-foreach r-cran-forecast r-cran-formatr r-cran-formula r-cran-fracdiff r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-future r-cran-future.apply r-cran-generics r-cran-ggplot2 r-cran-ggpubr r-cran-ggrepel r-cran-ggsci r-cran-ggsignif r-cran-globals r-cran-glue r-cran-gower r-cran-gprofiler2 r-cran-gridextra r-cran-gtable r-cran-hardhat r-cran-highr r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-ipred r-cran-isoband r-cran-iterators r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lava r-cran-lazyeval r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lme4 r-cran-lmtest r-cran-locfit r-cran-lubridate r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixmodels r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-microbenchmark r-cran-mime r-cran-miniui r-cran-minqa r-cran-modelmetrics r-cran-modelr r-cran-nlme r-cran-nloptr r-cran-nnet r-cran-numderiv r-cran-openssl r-cran-otel r-cran-parallelly r-cran-pbkrtest r-cran-pheatmap r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plotly r-cran-plyr r-cran-polynom r-cran-proc r-cran-prodlim r-cran-progressr r-cran-promises r-cran-proxy r-cran-purrr r-cran-quantreg r-cran-r6 r-cran-rappdirs r-cran-rbibutils r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcurl r-cran-rdpack r-cran-recipes r-cran-reformulas r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart r-cran-rstatix r-cran-s7 r-cran-sass r-cran-scales r-cran-shape r-cran-shiny r-cran-shinyjs r-cran-snow r-cran-sourcetools r-cran-sparsem r-cran-sparsevctrs r-cran-squarem r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-timechange r-cran-timedate r-cran-tinytex r-cran-tzdb r-cran-urca r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml r-cran-zoo r-pkg-team-core-architecture readline-common salmon samtools sensible-utils sgml-base shared-mime-info snakemake sphinx-common systemd systemd-sysv trim-galore ucf unicode-data unzip user-session-migration x11-common xdg-utils xkb-data xml-core xz-utils zip 0 upgraded, 699 newly installed, 0 to remove and 0 not upgraded. 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http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-11 [7788 B] Get:47 http://deb.debian.org/debian sid/main amd64 ucf all 3.0056 [47.1 kB] Get:48 http://deb.debian.org/debian sid/main amd64 xz-utils amd64 5.8.4-1 [761 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.78-1+b1 [28.8 kB] Get:50 http://deb.debian.org/debian sid/main amd64 bubblewrap amd64 0.13.1-1 [56.0 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.2.0-4+b1 [312 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.59-1 [293 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.14.3+dfsg-3 [510 kB] Get:54 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-9 [488 kB] Get:55 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-9 [840 kB] Get:56 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.17.1-5 [56.1 kB] Get:57 http://deb.debian.org/debian 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0.11.2-5.1 [1273 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libcairo-gobject2 amd64 1.18.4-3+b1 [129 kB] Get:81 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.17.1-5 [191 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.16-5+b1 [26.2 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.15-2 [75.8 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 12.3.2-2+b2 [513 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libthai-data all 0.1.30-3 [172 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.14-2 [39.1 kB] Get:87 http://deb.debian.org/debian sid/main amd64 libthai0 amd64 0.1.30-3 [51.7 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.58.2-1 [233 kB] Get:89 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.58.2-1 [56.0 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.58.2-1 [35.3 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libxml2-16 amd64 2.15.4+dfsg-1 [683 kB] Get:92 http://deb.debian.org/debian sid/main amd64 librsvg2-2 amd64 2.63.2+dfsg-1 [1836 kB] Get:93 http://deb.debian.org/debian sid/main amd64 glycin-loaders amd64 2.2.3+ds-1 [2951 kB] Get:94 http://deb.debian.org/debian sid/main amd64 libglycin-2-0 amd64 2.2.3+ds-1 [1605 kB] Get:95 http://deb.debian.org/debian sid/main amd64 glycin-thumbnailers amd64 2.2.3+ds-1 [207 kB] Get:96 http://deb.debian.org/debian sid/main amd64 libgdk-pixbuf2.0-common all 2.44.8+dfsg-1 [316 kB] Get:97 http://deb.debian.org/debian sid/main amd64 shared-mime-info amd64 2.4-5+b3 [758 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libgdk-pixbuf-2.0-0 amd64 2.44.8+dfsg-1 [103 kB] Get:99 http://deb.debian.org/debian sid/main amd64 gtk-update-icon-cache amd64 4.24.1+ds-1 [41.9 kB] Get:100 http://deb.debian.org/debian sid/main amd64 hicolor-icon-theme all 0.18-2 [11.8 kB] Get:101 http://deb.debian.org/debian sid/main amd64 adwaita-icon-theme all 51.0-1 [493 kB] Get:102 http://deb.debian.org/debian sid/main amd64 at-spi2-common all 2.62.1-1 [171 kB] Get:103 http://deb.debian.org/debian sid/main amd64 libsframe3 amd64 2.47-6 [86.2 kB] Get:104 http://deb.debian.org/debian sid/main amd64 binutils-common amd64 2.47-6 [2686 kB] Get:105 http://deb.debian.org/debian sid/main amd64 libbinutils amd64 2.47-6 [562 kB] Get:106 http://deb.debian.org/debian sid/main amd64 libgprofng0 amd64 2.47-6 [846 kB] Get:107 http://deb.debian.org/debian sid/main amd64 libctf-nobfd0 amd64 2.47-6 [166 kB] Get:108 http://deb.debian.org/debian sid/main amd64 libctf0 amd64 2.47-6 [98.2 kB] Get:109 http://deb.debian.org/debian sid/main amd64 libjansson4 amd64 2.15.1-1 [65.6 kB] Get:110 http://deb.debian.org/debian sid/main amd64 binutils-x86-64-linux-gnu amd64 2.47-6 [1132 kB] Get:111 http://deb.debian.org/debian sid/main amd64 binutils amd64 2.47-6 [288 kB] Get:112 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.43-7 [39.7 kB] Get:113 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 7.2.11-1 [2029 kB] Get:114 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.43-7 [2069 kB] Get:115 http://deb.debian.org/debian sid/main amd64 libisl23 amd64 0.28-1 [667 kB] Get:116 http://deb.debian.org/debian sid/main amd64 libmpfr6 amd64 4.2.2-3 [729 kB] Get:117 http://deb.debian.org/debian sid/main amd64 libmpc3 amd64 1.3.1-3 [52.2 kB] Get:118 http://deb.debian.org/debian sid/main amd64 cpp-16-x86-64-linux-gnu amd64 16.2.0-3 [13.7 MB] Get:119 http://deb.debian.org/debian sid/main amd64 cpp-16 amd64 16.2.0-3 [1272 B] Get:120 http://deb.debian.org/debian sid/main amd64 cpp-x86-64-linux-gnu amd64 4:16.1.0-3 [4472 B] Get:121 http://deb.debian.org/debian sid/main amd64 cpp amd64 4:16.1.0-3 [1568 B] Get:122 http://deb.debian.org/debian sid/main amd64 libcc1-0 amd64 16.2.0-3 [46.1 kB] Get:123 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 16.2.0-3 [151 kB] Get:124 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 16.2.0-3 [26.9 kB] Get:125 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 16.2.0-3 [2888 kB] Get:126 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 16.2.0-3 [1281 kB] Get:127 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 16.2.0-3 [2574 kB] Get:128 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 16.2.0-3 [1136 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 16.2.0-3 [1580 kB] Get:130 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 16.2.0-3 [148 kB] Get:131 http://deb.debian.org/debian sid/main amd64 libgcc-16-dev amd64 16.2.0-3 [2782 kB] Get:132 http://deb.debian.org/debian sid/main amd64 gcc-16-x86-64-linux-gnu amd64 16.2.0-3 [26.6 MB] Get:133 http://deb.debian.org/debian sid/main amd64 gcc-16 amd64 16.2.0-3 [538 kB] Get:134 http://deb.debian.org/debian sid/main amd64 gcc-x86-64-linux-gnu amd64 4:16.1.0-3 [1432 B] Get:135 http://deb.debian.org/debian sid/main amd64 gcc amd64 4:16.1.0-3 [5148 B] Get:136 http://deb.debian.org/debian sid/main amd64 libstdc++-16-dev amd64 16.2.0-3 [2755 kB] Get:137 http://deb.debian.org/debian sid/main amd64 g++-16-x86-64-linux-gnu amd64 16.2.0-3 [15.1 MB] Get:138 http://deb.debian.org/debian sid/main amd64 g++-16 amd64 16.2.0-3 [35.4 kB] Get:139 http://deb.debian.org/debian sid/main amd64 g++-x86-64-linux-gnu amd64 4:16.1.0-3 [1196 B] Get:140 http://deb.debian.org/debian sid/main amd64 g++ amd64 4:16.1.0-3 [1340 B] Get:141 http://deb.debian.org/debian sid/main amd64 make amd64 4.4.1-3 [463 kB] Get:142 http://deb.debian.org/debian sid/main amd64 libdpkg-perl all 1.23.11 [650 kB] Get:143 http://deb.debian.org/debian sid/main amd64 patch amd64 2.8-2 [134 kB] Get:144 http://deb.debian.org/debian sid/main amd64 dpkg-dev all 1.23.11 [1005 kB] Get:145 http://deb.debian.org/debian sid/main amd64 build-essential amd64 12.12 [4624 B] Get:146 http://deb.debian.org/debian sid/main amd64 ca-certificates-java all 20260311 [11.2 kB] Get:147 http://deb.debian.org/debian sid/main amd64 coinor-libcoinutils3v5 amd64 2.11.12+ds-1+b2 [474 kB] Get:148 http://deb.debian.org/debian sid/main amd64 coinor-libosi1v5 amd64 0.108.11+ds-1+b2 [298 kB] Get:149 http://deb.debian.org/debian sid/main amd64 coinor-libclp1 amd64 1.17.10+ds-1+b2 [904 kB] Get:150 http://deb.debian.org/debian sid/main amd64 coinor-libcgl1 amd64 0.60.10+ds-1 [453 kB] Get:151 http://deb.debian.org/debian sid/main amd64 coinor-libcbc3.1 amd64 2.10.13+ds-1 [724 kB] Get:152 http://deb.debian.org/debian sid/main amd64 coinor-cbc amd64 2.10.13+ds-1 [15.3 kB] Get:153 http://deb.debian.org/debian sid/main amd64 python3-xopen all 1.7.0-4 [16.4 kB] Get:154 http://deb.debian.org/debian sid/main amd64 python3-dnaio amd64 1.2.4-1+b2 [83.9 kB] Get:155 http://deb.debian.org/debian sid/main amd64 python3-cutadapt amd64 4.7-2+b5 [204 kB] Get:156 http://deb.debian.org/debian sid/main amd64 cutadapt all 4.7-2 [25.1 kB] Get:157 http://deb.debian.org/debian sid/main amd64 dbus-user-session amd64 1.16.2-8 [49.3 kB] Get:158 http://deb.debian.org/debian sid/main amd64 libdconf1 amd64 51.0-2 [45.3 kB] Get:159 http://deb.debian.org/debian sid/main amd64 dconf-service amd64 51.0-2 [36.3 kB] Get:160 http://deb.debian.org/debian sid/main amd64 dconf-gsettings-backend amd64 51.0-2 [31.3 kB] Get:161 http://deb.debian.org/debian sid/main amd64 java-common all 0.77 [6620 B] Get:162 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:3.1.3-4 [213 kB] Get:163 http://deb.debian.org/debian sid/main amd64 libnspr4 amd64 2:4.40-1 [116 kB] Get:164 http://deb.debian.org/debian sid/main amd64 libnss3 amd64 2:3.131-1 [1549 kB] Get:165 http://deb.debian.org/debian sid/main amd64 libpcsclite1 amd64 2.5.3-1 [56.7 kB] Get:166 http://deb.debian.org/debian sid/main amd64 openjdk-25-jre-headless amd64 25.0.5~7ea-2 [54.0 MB] Get:167 http://deb.debian.org/debian sid/main amd64 default-jre-headless amd64 2:1.25-77 [3012 B] Get:168 http://deb.debian.org/debian sid/main amd64 user-session-migration amd64 0.5.2 [9856 B] Get:169 http://deb.debian.org/debian sid/main amd64 gsettings-desktop-schemas all 51.0-2 [846 kB] Get:170 http://deb.debian.org/debian sid/main amd64 libgtk-3-common all 3.24.52-3 [4928 kB] Get:171 http://deb.debian.org/debian sid/main amd64 libatk1.0-0t64 amd64 2.62.1-1 [51.7 kB] Get:172 http://deb.debian.org/debian sid/main amd64 libxi6 amd64 2:1.8.3-1 [86.4 kB] Get:173 http://deb.debian.org/debian sid/main amd64 libxres1 amd64 2:1.2.1-2 [17.9 kB] Get:174 http://deb.debian.org/debian sid/main amd64 libatspi2.0-0t64 amd64 2.62.1-1 [86.9 kB] Get:175 http://deb.debian.org/debian sid/main amd64 libatk-bridge2.0-0t64 amd64 2.62.1-1 [69.2 kB] Get:176 http://deb.debian.org/debian sid/main amd64 libcloudproviders0 amd64 0.4.1-1 [29.6 kB] Get:177 http://deb.debian.org/debian sid/main amd64 libcolord2 amd64 1.4.8-3 [141 kB] Get:178 http://deb.debian.org/debian sid/main amd64 libavahi-common-data amd64 0.8-18 [113 kB] Get:179 http://deb.debian.org/debian sid/main amd64 libavahi-common3 amd64 0.8-18 [45.2 kB] Get:180 http://deb.debian.org/debian sid/main amd64 libavahi-client3 amd64 0.8-18 [49.2 kB] Get:181 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:182 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-5 [109 kB] Get:183 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.26.5-1 [482 kB] Get:184 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.21.0-2+b1 [49.3 kB] Get:185 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.13-1 [1546 kB] Get:186 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.22.1-3 [31.1 kB] Get:187 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.4-1+b2 [19.5 kB] Get:188 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.22.1-3 [79.0 kB] Get:189 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:190 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.22.1-3 [335 kB] Get:191 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.22.1-3 [137 kB] Get:192 http://deb.debian.org/debian sid/main amd64 libcups2t64 amd64 2.4.20-1 [268 kB] Get:193 http://deb.debian.org/debian sid/main amd64 libepoxy0 amd64 1.5.10-2+b2 [199 kB] Get:194 http://deb.debian.org/debian sid/main amd64 libwayland-client0 amd64 1.26.0-1 [29.4 kB] Get:195 http://deb.debian.org/debian sid/main amd64 libwayland-cursor0 amd64 1.26.0-1 [11.8 kB] Get:196 http://deb.debian.org/debian sid/main amd64 libwayland-egl1 amd64 1.26.0-1 [5688 B] Get:197 http://deb.debian.org/debian sid/main amd64 libxcomposite1 amd64 1:0.4.6-1+b2 [16.6 kB] Get:198 http://deb.debian.org/debian sid/main amd64 libxfixes3 amd64 1:6.0.0-2+b5 [20.3 kB] Get:199 http://deb.debian.org/debian sid/main amd64 libxcursor1 amd64 1:1.2.3-1+b2 [40.3 kB] Get:200 http://deb.debian.org/debian sid/main amd64 libxdamage1 amd64 1:1.1.7-1+b1 [16.3 kB] Get:201 http://deb.debian.org/debian sid/main amd64 libxinerama1 amd64 2:1.1.4-3+b5 [16.0 kB] Get:202 http://deb.debian.org/debian sid/main amd64 xkb-data all 2.48-1 [841 kB] Get:203 http://deb.debian.org/debian sid/main amd64 libxkbcommon0 amd64 1.13.1-1 [148 kB] Get:204 http://deb.debian.org/debian sid/main amd64 libxrandr2 amd64 2:1.5.4-1+b4 [36.5 kB] Get:205 http://deb.debian.org/debian sid/main amd64 libgtk-3-0t64 amd64 3.24.52-3 [3069 kB] Get:206 http://deb.debian.org/debian sid/main amd64 libglvnd0 amd64 1.7.0-3+b1 [54.3 kB] Get:207 http://deb.debian.org/debian sid/main amd64 libdrm-common all 2.4.134-3 [7860 B] Get:208 http://deb.debian.org/debian sid/main amd64 libdrm2 amd64 2.4.134-3 [38.5 kB] Get:209 http://deb.debian.org/debian sid/main amd64 libdrm-amdgpu1 amd64 2.4.134-3 [23.3 kB] Get:210 http://deb.debian.org/debian sid/main amd64 pci.ids all 0.0~2026.09.23-1 [287 kB] Get:211 http://deb.debian.org/debian sid/main amd64 libpciaccess0 amd64 0.19-2 [18.5 kB] Get:212 http://deb.debian.org/debian sid/main amd64 libdrm-intel1 amd64 2.4.134-3 [64.2 kB] Get:213 http://deb.debian.org/debian sid/main amd64 libelf1t64 amd64 0.196-1 [61.2 kB] Get:214 http://deb.debian.org/debian sid/main amd64 libedit2 amd64 3.1-20260512-1 [93.6 kB] Get:215 http://deb.debian.org/debian sid/main amd64 libz3-4 amd64 4.13.3-1.1 [8644 kB] Get:216 http://deb.debian.org/debian sid/main amd64 libllvm22 amd64 1:22.1.8-3 [29.4 MB] Get:217 http://deb.debian.org/debian sid/main amd64 libsensors-config all 1:3.6.2-2 [16.2 kB] Get:218 http://deb.debian.org/debian sid/main amd64 libsensors5 amd64 1:3.6.2-2+b2 [37.2 kB] Get:219 http://deb.debian.org/debian sid/main amd64 libx11-xcb1 amd64 2:1.8.13-1 [250 kB] Get:220 http://deb.debian.org/debian sid/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b2 [107 kB] Get:221 http://deb.debian.org/debian sid/main amd64 libxcb-present0 amd64 1.17.0-2+b2 [106 kB] Get:222 http://deb.debian.org/debian sid/main amd64 libxcb-randr0 amd64 1.17.0-2+b2 [117 kB] Get:223 http://deb.debian.org/debian sid/main amd64 libxcb-sync1 amd64 1.17.0-2+b2 [109 kB] Get:224 http://deb.debian.org/debian sid/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b2 [109 kB] Get:225 http://deb.debian.org/debian sid/main amd64 libxshmfence1 amd64 1.3.3-1+b2 [11.2 kB] Get:226 http://deb.debian.org/debian sid/main amd64 mesa-libgallium amd64 26.2.5-1 [11.9 MB] Get:227 http://deb.debian.org/debian sid/main amd64 libgbm1 amd64 26.2.5-1 [57.0 kB] Get:228 http://deb.debian.org/debian sid/main amd64 libvulkan1 amd64 1.4.363.0-1 [173 kB] Get:229 http://deb.debian.org/debian sid/main amd64 libgl1-mesa-dri amd64 26.2.5-1 [37.8 kB] Get:230 http://deb.debian.org/debian sid/main amd64 libxcb-glx0 amd64 1.17.0-2+b2 [122 kB] Get:231 http://deb.debian.org/debian sid/main amd64 libxxf86vm1 amd64 1:1.1.4-2+b1 [20.2 kB] Get:232 http://deb.debian.org/debian sid/main amd64 libglx-mesa0 amd64 26.2.5-1 [132 kB] Get:233 http://deb.debian.org/debian sid/main amd64 libglx0 amd64 1.7.0-3+b1 [34.9 kB] Get:234 http://deb.debian.org/debian sid/main amd64 libgl1 amd64 1.7.0-3+b1 [87.1 kB] Get:235 http://deb.debian.org/debian sid/main amd64 libasound2-data all 1.2.16.1-2 [19.4 kB] Get:236 http://deb.debian.org/debian sid/main amd64 libasound2t64 amd64 1.2.16.1-2 [417 kB] Get:237 http://deb.debian.org/debian sid/main amd64 libgif7 amd64 6.1.3-1 [46.1 kB] Get:238 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+26 [217 kB] Get:239 http://deb.debian.org/debian sid/main amd64 libxtst6 amd64 2:1.2.5-1+b2 [26.2 kB] Get:240 http://deb.debian.org/debian sid/main amd64 openjdk-25-jre amd64 25.0.5~7ea-2 [209 kB] Get:241 http://deb.debian.org/debian sid/main amd64 default-jre amd64 2:1.25-77 [1028 B] Get:242 http://deb.debian.org/debian sid/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get:243 http://deb.debian.org/debian sid/main amd64 xml-core all 0.21 [19.0 kB] Get:244 http://deb.debian.org/debian sid/main amd64 docutils-common all 0.23+dfsg-2 [124 kB] Get:245 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.25-1 [48.0 kB] Get:246 http://deb.debian.org/debian sid/main amd64 libisal2 amd64 2.31.1-3 [117 kB] Get:247 http://deb.debian.org/debian sid/main amd64 fastp amd64 1.0.1+dfsg-1 [225 kB] Get:248 http://deb.debian.org/debian sid/main amd64 libcommons-math3-java all 3.6.1-4 [2040 kB] Get:249 http://deb.debian.org/debian sid/main amd64 libjbzip2-java all 0.9.1-8 [42.7 kB] Get:250 http://deb.debian.org/debian sid/main amd64 libapache-pom-java all 33-2 [5852 B] Get:251 http://deb.debian.org/debian sid/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get:252 http://deb.debian.org/debian sid/main amd64 libcommons-codec-java all 1.22.1-1 [346 kB] Get:253 http://deb.debian.org/debian sid/main amd64 libcommons-io-java all 2.22.0-1 [570 kB] Get:254 http://deb.debian.org/debian sid/main amd64 libcommons-compress-java all 1.27.1-2 [641 kB] Get:255 http://deb.debian.org/debian sid/main amd64 libcommons-logging-java all 1.3.0-2 [68.6 kB] Get:256 http://deb.debian.org/debian sid/main amd64 libcommons-jexl2-java all 2.1.1-6 [256 kB] Get:257 http://deb.debian.org/debian sid/main amd64 libhamcrest-java all 2.2-2 [121 kB] Get:258 http://deb.debian.org/debian sid/main amd64 junit4 all 4.13.2-6 [350 kB] Get:259 http://deb.debian.org/debian sid/main amd64 libcommons-collections3-java all 3.2.2-4 [531 kB] Get:260 http://deb.debian.org/debian sid/main amd64 libcommons-beanutils-java all 1.10.1-1.1 [231 kB] Get:261 http://deb.debian.org/debian sid/main amd64 libcommons-collections4-java all 4.6.0-1 [835 kB] Get:262 http://deb.debian.org/debian sid/main amd64 libcommons-lang3-java all 3.20.0-1 [679 kB] Get:263 http://deb.debian.org/debian sid/main amd64 libezmorph-java all 1.0.6-4 [75.9 kB] Get:264 http://deb.debian.org/debian sid/main amd64 liblog4j1.2-java all 1.2.17-11 [444 kB] Get:265 http://deb.debian.org/debian sid/main amd64 libslf4j-java all 1.7.36-1 [140 kB] Get:266 http://deb.debian.org/debian sid/main amd64 libjaxen-java all 1.2.0-1 [214 kB] Get:267 http://deb.debian.org/debian sid/main amd64 libxml-commons-external-java all 1.4.01-6 [240 kB] Get:268 http://deb.debian.org/debian sid/main amd64 libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] Get:269 http://deb.debian.org/debian sid/main amd64 libxerces2-java all 2.12.2-1 [1440 kB] Get:270 http://deb.debian.org/debian sid/main amd64 libxom-java all 1.4.6-2 [177 kB] Get:271 http://deb.debian.org/debian sid/main amd64 libjson-java all 3.2.0+dfsg-2 [142 kB] Get:272 http://deb.debian.org/debian sid/main amd64 libmbedcrypto16 amd64 3.6.7-3 [367 kB] Get:273 http://deb.debian.org/debian sid/main amd64 libmbedx509-7 amd64 3.6.7-3 [157 kB] Get:274 http://deb.debian.org/debian sid/main amd64 libmbedtls21 amd64 3.6.7-3 [250 kB] Get:275 http://deb.debian.org/debian sid/main amd64 ncbi-vdb-data all 3.4.1+dfsg-1 [86.1 kB] Get:276 http://deb.debian.org/debian sid/main amd64 libncbi-vdb3 amd64 3.4.1+dfsg-1 [1260 kB] Get:277 http://deb.debian.org/debian sid/main amd64 libncbi-ngs3 amd64 3.4.1+dfsg-2 [162 kB] Get:278 http://deb.debian.org/debian sid/main amd64 libngs-jni amd64 3.4.1+dfsg-2 [26.3 kB] Get:279 http://deb.debian.org/debian sid/main amd64 libngs-java amd64 3.4.1+dfsg-2 [113 kB] Get:280 http://deb.debian.org/debian sid/main amd64 librhino-java all 1.7.15.1-0.1 [1388 kB] Get:281 http://deb.debian.org/debian sid/main amd64 libsnappy1v5 amd64 1.3.1-3 [32.1 kB] Get:282 http://deb.debian.org/debian sid/main amd64 libsnappy-jni amd64 1.1.10.8-1 [6548 B] Get:283 http://deb.debian.org/debian sid/main amd64 libsnappy-java all 1.1.10.8-1 [87.8 kB] Get:284 http://deb.debian.org/debian sid/main amd64 libhtsjdk-java all 5.0.0+dfsg-2 [1930 kB] Get:285 http://deb.debian.org/debian sid/main amd64 libfindbin-libs-perl all 4.0.4-1 [32.3 kB] Get:286 http://deb.debian.org/debian sid/main amd64 fastqc all 0.12.1+dfsg-4 [398 kB] Get:287 http://deb.debian.org/debian sid/main amd64 fonts-font-awesome-legacy all 6-4 [1547 kB] Get:288 http://deb.debian.org/debian sid/main amd64 fonts-font-awesome all 7.3.0+dfsg-1 [677 kB] Get:289 http://deb.debian.org/debian sid/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-7 [163 kB] Get:290 http://deb.debian.org/debian sid/main amd64 fonts-lyx all 2.5.3-2 [190 kB] Get:291 http://deb.debian.org/debian sid/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get:292 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.17.0-1 [68.1 kB] Get:293 http://deb.debian.org/debian sid/main amd64 libngtcp2-16 amd64 1.24.0-1 [145 kB] Get:294 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-12 [18.4 kB] Get:295 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-12 [59.4 kB] Get:296 http://deb.debian.org/debian sid/main amd64 libldap2 amd64 2.6.14+dfsg-2 [200 kB] Get:297 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.70.0-1 [92.7 kB] Get:298 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-gnutls8 amd64 1.24.0-1 [23.9 kB] Get:299 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.23.3-1 [61.7 kB] Get:300 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-6 [253 kB] Get:301 http://deb.debian.org/debian sid/main amd64 libcurl4-gnutls amd64 8.23.0-1 [463 kB] Get:302 http://deb.debian.org/debian sid/main amd64 liberror-perl all 0.17030-1 [26.9 kB] Get:303 http://deb.debian.org/debian sid/main amd64 git-man all 1:2.55.0-1 [2381 kB] Get:304 http://deb.debian.org/debian sid/main amd64 git amd64 1:2.55.0-1 [9658 kB] Get:305 http://deb.debian.org/debian sid/main amd64 hisat2 amd64 2.2.1-5+b4 [3832 kB] Get:306 http://deb.debian.org/debian sid/main amd64 javascript-common all 12+nmu1 [4864 B] Get:307 http://deb.debian.org/debian sid/main amd64 libabsl20260526 amd64 20260526.0-2+b1 [584 kB] Get:308 http://deb.debian.org/debian sid/main amd64 libaom3 amd64 3.14.1-1 [1923 kB] Get:309 http://deb.debian.org/debian sid/main amd64 libgav1-2 amd64 0.20.0-2+b2 [372 kB] Get:310 http://deb.debian.org/debian sid/main amd64 librav1e0.8 amd64 0.8.1-12 [970 kB] Get:311 http://deb.debian.org/debian sid/main amd64 libsvtav1enc4 amd64 4.2.0+dfsg-1 [2492 kB] Get:312 http://deb.debian.org/debian sid/main amd64 libyuv0 amd64 0.0.1974.20261008-1 [195 kB] Get:313 http://deb.debian.org/debian sid/main amd64 libavif16 amd64 1.4.2-1 [147 kB] Get:314 http://deb.debian.org/debian sid/main amd64 libcurl3t64-gnutls amd64 8.23.0-1 [18.0 kB] Get:315 http://deb.debian.org/debian sid/main amd64 libbigwig0t64 amd64 0.4.8+dfsg-3+b1 [29.8 kB] Get:316 http://deb.debian.org/debian sid/main amd64 libboost-regex1.92.0 amd64 1.92.0-4 [320 kB] Get:317 http://deb.debian.org/debian sid/main amd64 libboost-regex1.92-dev amd64 1.92.0-4 [339 kB] Get:318 http://deb.debian.org/debian sid/main amd64 libboost1.92-dev amd64 1.92.0-4 [11.6 MB] Get:319 http://deb.debian.org/debian sid/main amd64 libboost-dev amd64 1.92.0.1 [3260 B] Get:320 http://deb.debian.org/debian sid/main amd64 libboost-filesystem1.92.0 amd64 1.92.0-4 [294 kB] Get:321 http://deb.debian.org/debian sid/main amd64 libboost-iostreams1.92.0 amd64 1.92.0-4 [248 kB] Get:322 http://deb.debian.org/debian sid/main amd64 libboost-program-options1.92.0 amd64 1.92.0-4 [344 kB] Get:323 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-ossl0 amd64 1.24.0-1 [26.5 kB] Get:324 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.23.0-1 [469 kB] Get:325 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.61-5 [93.1 kB] Get:326 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.12.4-2 [936 kB] Get:327 http://deb.debian.org/debian sid/main amd64 libharfbuzz-subset0 amd64 12.3.2-2+b2 [574 kB] Get:328 http://deb.debian.org/debian sid/main amd64 libhtscodecs2 amd64 1.6.7-1 [102 kB] Get:329 http://deb.debian.org/debian sid/main amd64 libhts3t64 amd64 1.24-3 [506 kB] Get:330 http://deb.debian.org/debian sid/main amd64 libhwloc15 amd64 2.15.0-2 [178 kB] Get:331 http://deb.debian.org/debian sid/main amd64 libice6 amd64 2:1.1.1-1+b2 [66.8 kB] Get:332 http://deb.debian.org/debian sid/main amd64 libicu78 amd64 78.3-2 [10.0 MB] Get:333 http://deb.debian.org/debian sid/main amd64 libimagequant0 amd64 4.4.1-1+b2 [255 kB] Get:334 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b3 [32.2 kB] Get:335 http://deb.debian.org/debian sid/main amd64 libjemalloc2 amd64 5.3.1-2 [302 kB] Get:336 http://deb.debian.org/debian sid/main amd64 libjs-bootstrap all 3.4.1+dfsg-7 [173 kB] Get:337 http://deb.debian.org/debian sid/main amd64 libjs-popper.js all 1.16.1+ds-7 [52.3 kB] Get:338 http://deb.debian.org/debian sid/main amd64 libjs-bootstrap4 all 4.6.2+dfsg-3 [485 kB] Get:339 http://deb.debian.org/debian sid/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Get:340 http://deb.debian.org/debian sid/main amd64 libjs-es5-shim all 4.6.7-2 [47.4 kB] Get:341 http://deb.debian.org/debian sid/main amd64 libjs-highlight.js all 10.7.3+dfsg-6 [177 kB] Get:342 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get:343 http://deb.debian.org/debian sid/main amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Get:344 http://deb.debian.org/debian sid/main amd64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] Get:345 http://deb.debian.org/debian sid/main amd64 libjs-jquery-metadata all 12-4 [6532 B] Get:346 http://deb.debian.org/debian sid/main amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB] Get:347 http://deb.debian.org/debian sid/main amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [4008 B] Get:348 http://deb.debian.org/debian sid/main amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB] Get:349 http://deb.debian.org/debian sid/main amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-5 [184 kB] Get:350 http://deb.debian.org/debian sid/main amd64 libjs-jquery-ui all 1.14.2+dfsg-1 [245 kB] Get:351 http://deb.debian.org/debian sid/main amd64 libjs-json all 0~20221030+~1.0.8-1 [20.0 kB] Get:352 http://deb.debian.org/debian sid/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get:353 http://deb.debian.org/debian sid/main amd64 libjs-modernizr all 3.13.0-0.1 [191 kB] Get:354 http://deb.debian.org/debian sid/main amd64 libjs-prettify all 2015.12.04+dfsg-3 [42.0 kB] Get:355 http://deb.debian.org/debian sid/main amd64 libjs-sphinxdoc all 9.1.0-9 [46.3 kB] Get:356 http://deb.debian.org/debian sid/main amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB] Get:357 http://deb.debian.org/debian sid/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get:358 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.2.0+ds-1 [203 kB] Get:359 http://deb.debian.org/debian sid/main amd64 liblua5.4-0 amd64 5.4.9-1 [152 kB] Get:360 http://deb.debian.org/debian sid/main amd64 libncurses6 amd64 6.6+20260608-2 [107 kB] Get:361 http://deb.debian.org/debian sid/main amd64 libnlopt1 amd64 2.11.0-2 [183 kB] Get:362 http://deb.debian.org/debian sid/main amd64 libnuma1 amd64 2.0.19-1+b2 [22.0 kB] Get:363 http://deb.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.5.4-1.1 [205 kB] Get:364 http://deb.debian.org/debian sid/main amd64 libpaper2 amd64 2.2.5-0.4 [16.6 kB] Get:365 http://deb.debian.org/debian sid/main amd64 libpaper-utils amd64 2.2.5-0.4 [15.8 kB] Get:366 http://deb.debian.org/debian sid/main amd64 libpython3.14 amd64 3.14.8-1 [2528 kB] Get:367 http://deb.debian.org/debian sid/main amd64 libqhull-r8.0 amd64 2020.2-9 [248 kB] Get:368 http://deb.debian.org/debian sid/main amd64 libraqm0 amd64 0.10.5-1 [13.6 kB] Get:369 http://deb.debian.org/debian sid/main amd64 libsm6 amd64 2:1.2.6-1+b2 [37.9 kB] Get:370 http://deb.debian.org/debian sid/main amd64 libstaden-read14t64 amd64 1.15.1-1 [271 kB] Get:371 http://deb.debian.org/debian sid/main amd64 libtbbbind-2-5 amd64 2023.1.0-3 [13.2 kB] Get:372 http://deb.debian.org/debian sid/main amd64 libtbbmalloc2 amd64 2023.1.0-3 [51.0 kB] Get:373 http://deb.debian.org/debian sid/main amd64 libtbb12 amd64 2023.1.0-3 [101 kB] Get:374 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.18+dfsg-1 [1053 kB] Get:375 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.6.0-0.1 [349 kB] Get:376 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.7.2-1 [383 kB] Get:377 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.7+ds-1 [10.0 kB] Get:378 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.7+ds-1 [82.9 kB] Get:379 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b5 [54.8 kB] Get:380 http://deb.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1+b4 [17.0 kB] Get:381 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.18-1 [801 kB] Get:382 http://deb.debian.org/debian sid/main amd64 libuv1t64 amd64 1.53.0-1 [162 kB] Get:383 http://deb.debian.org/debian sid/main amd64 libwebpdemux2 amd64 1.6.0-0.1 [114 kB] Get:384 http://deb.debian.org/debian sid/main amd64 libwebpmux3 amd64 1.6.0-0.1 [127 kB] Get:385 http://deb.debian.org/debian sid/main amd64 libxslt1.1 amd64 1.1.45-0.1 [158 kB] Get:386 http://deb.debian.org/debian sid/main amd64 libxt6t64 amd64 1:1.2.1-1.3+b2 [191 kB] Get:387 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-2+b1 [53.8 kB] Get:388 http://deb.debian.org/debian sid/main amd64 megadepth amd64 1.2.0-5+b1 [113 kB] Get:389 http://deb.debian.org/debian sid/main amd64 python3-click all 8.3.3-3 [107 kB] Get:390 http://deb.debian.org/debian sid/main amd64 python3-humanfriendly all 10.0-7 [84.9 kB] Get:391 http://deb.debian.org/debian sid/main amd64 python3-coloredlogs all 15.0.1-2 [47.9 kB] Get:392 http://deb.debian.org/debian sid/main amd64 python3-markupsafe amd64 3.0.3-2+b1 [13.7 kB] Get:393 http://deb.debian.org/debian sid/main amd64 python3-jinja2 all 3.1.6-4 [106 kB] Get:394 http://deb.debian.org/debian sid/main amd64 python3-lzstring all 1.0.4-3 [5544 B] Get:395 http://deb.debian.org/debian sid/main amd64 python3-markdown all 3.10.3-1 [88.0 kB] Get:396 http://deb.debian.org/debian sid/main amd64 python-matplotlib-data all 3.10.9+dfsg1-2 [2734 kB] Get:397 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-5 [78.7 kB] Get:398 http://deb.debian.org/debian sid/main amd64 python3-pil amd64 12.3.0-1+b1 [555 kB] Get:399 http://deb.debian.org/debian sid/main amd64 python3.14-tk amd64 3.14.8-1 [108 kB] Get:400 http://deb.debian.org/debian sid/main amd64 python3-tk amd64 3.14.7-3 [8472 B] Get:401 http://deb.debian.org/debian sid/main amd64 python3-pil.imagetk amd64 12.3.0-1+b1 [83.6 kB] Get:402 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.3.3-2 [168 kB] Get:403 http://deb.debian.org/debian sid/main amd64 python3-contourpy amd64 1.3.3-2+b1 [228 kB] Get:404 http://deb.debian.org/debian sid/main amd64 python3-cycler all 0.12.1-3 [9112 B] Get:405 http://deb.debian.org/debian sid/main amd64 python3-brotli amd64 1.2.0-4+b1 [317 kB] Get:406 http://deb.debian.org/debian sid/main amd64 python3-lxml amd64 6.1.3-1 [1527 kB] Get:407 http://deb.debian.org/debian sid/main amd64 python3-lz4 amd64 4.4.5+dfsg-1+b1 [26.1 kB] Get:408 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.3.1-1 [33.3 kB] Get:409 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.17.1-5+b1 [16.0 MB] Get:410 http://deb.debian.org/debian sid/main amd64 python3-mpmath all 1.4.1-4 [448 kB] Get:411 http://deb.debian.org/debian sid/main amd64 python3-sympy all 1.14.0-6 [4226 kB] Get:412 http://deb.debian.org/debian sid/main amd64 python3-attr all 26.1.0-1 [72.2 kB] Get:413 http://deb.debian.org/debian sid/main amd64 python3-ufolib2 all 0.18.1+dfsg1-2 [32.3 kB] Get:414 http://deb.debian.org/debian sid/main amd64 python3-uharfbuzz amd64 0.53.3-1+b1 [219 kB] Get:415 http://deb.debian.org/debian sid/main amd64 python3-zopfli amd64 0.4.3-2 [10.8 kB] Get:416 http://deb.debian.org/debian sid/main amd64 unicode-data all 17.0.0-2 [9354 kB] Get:417 http://deb.debian.org/debian sid/main amd64 python3-fonttools amd64 4.65.0-1 [1513 kB] Get:418 http://deb.debian.org/debian sid/main amd64 python3-kiwisolver amd64 1.5.1-1 [65.4 kB] Get:419 http://deb.debian.org/debian sid/main amd64 python3-packaging all 26.2-3 [84.3 kB] Get:420 http://deb.debian.org/debian sid/main amd64 python3-matplotlib amd64 3.10.9+dfsg1-2 [22.7 MB] Get:421 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2026.7.22+ds-1 [9928 B] Get:422 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer amd64 3.4.7-2+b1 [190 kB] Get:423 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.20-1 [45.8 kB] Get:424 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 2.8.0-2 [125 kB] Get:425 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:426 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.34.2-1 [77.6 kB] Get:427 http://deb.debian.org/debian sid/main amd64 python3-mdurl all 0.1.2-2 [9108 B] Get:428 http://deb.debian.org/debian sid/main amd64 python3-uc-micro all 2.0.0-1 [6028 B] Get:429 http://deb.debian.org/debian sid/main amd64 python3-linkify-it all 2.2.0-1 [20.8 kB] Get:430 http://deb.debian.org/debian sid/main amd64 python3-markdown-it all 4.2.0-4 [63.8 kB] Get:431 http://deb.debian.org/debian sid/main amd64 python3-pygments all 2.20.0+dfsg-2 [850 kB] Get:432 http://deb.debian.org/debian sid/main amd64 python3-rich all 15.0.0-2 [210 kB] Get:433 http://deb.debian.org/debian sid/main amd64 python3-networkx all 3.4.2-6 [24.1 MB] Get:434 http://deb.debian.org/debian sid/main amd64 python3-colormath all 3.0.0-4 [34.7 kB] Get:435 http://deb.debian.org/debian sid/main amd64 python3-spectra all 0.1.0-2 [16.7 kB] Get:436 http://deb.debian.org/debian sid/main amd64 python3-yaml amd64 6.0.3-1+b1 [138 kB] Get:437 http://deb.debian.org/debian sid/main amd64 python3-humanize all 4.16.0-1 [56.2 kB] Get:438 http://deb.debian.org/debian sid/main amd64 python3-pytz all 2026.5-1 [34.5 kB] Get:439 http://deb.debian.org/debian sid/main amd64 python3-fastjsonschema all 2.22.1-1 [24.0 kB] Get:440 http://deb.debian.org/debian sid/main amd64 python3-rpds-py amd64 0.30.0-2+b1 [249 kB] Get:441 http://deb.debian.org/debian sid/main amd64 python3-referencing all 0.37.0+~2025.1.1-3 [24.1 kB] Get:442 http://deb.debian.org/debian sid/main amd64 python3-jsonschema-specifications all 2025.9.1-1 [9112 B] Get:443 http://deb.debian.org/debian sid/main amd64 python3-jsonschema all 4.26.0-3 [74.6 kB] Get:444 http://deb.debian.org/debian sid/main amd64 python3-platformdirs all 4.11.9-1 [19.7 kB] Get:445 http://deb.debian.org/debian sid/main amd64 python3-traitlets all 5.16.1-1 [71.4 kB] Get:446 http://deb.debian.org/debian sid/main amd64 python3-jupyter-core all 5.9.1-1 [36.5 kB] Get:447 http://deb.debian.org/debian sid/main amd64 python3-nbformat all 5.10.4-3 [43.0 kB] Get:448 http://deb.debian.org/debian sid/main amd64 python3-tenacity all 9.1.4-2 [45.9 kB] Get:449 http://deb.debian.org/debian sid/main amd64 python3-plotly all 5.20.0+dfsg-1.1 [2726 kB] Get:450 http://deb.debian.org/debian sid/main amd64 python3-pyaml-env all 1.2.1-2 [9032 B] Get:451 http://deb.debian.org/debian sid/main amd64 python3-rich-click all 1.9.9-1 [60.0 kB] Get:452 http://deb.debian.org/debian sid/main amd64 multiqc all 1.21+dfsg-4 [781 kB] Get:453 http://deb.debian.org/debian sid/main amd64 node-bootstrap-sass all 3.4.3-2 [186 kB] Get:454 http://deb.debian.org/debian sid/main amd64 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Get:455 http://deb.debian.org/debian sid/main amd64 node-normalize.css all 8.0.1-5.1 [12.4 kB] Get:456 http://deb.debian.org/debian sid/main amd64 pandoc-data all 3.11-1 [536 kB] Get:457 http://deb.debian.org/debian sid/main amd64 pandoc amd64 3.11-1 [29.0 MB] Get:458 http://deb.debian.org/debian sid/main amd64 python3-deeptoolsintervals amd64 0.1.9-3+b13 [53.4 kB] Get:459 http://deb.debian.org/debian sid/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get:460 http://deb.debian.org/debian sid/main amd64 sphinx-common all 9.1.0-9 [700 kB] Get:461 http://deb.debian.org/debian sid/main amd64 python3-alabaster all 1.0.0-2 [20.4 kB] Get:462 http://deb.debian.org/debian sid/main amd64 python-babel-localedata all 2.18.0+git2026-08-12-3 [6375 kB] Get:463 http://deb.debian.org/debian sid/main amd64 python3-babel all 2.18.0+git2026-08-12-3 [120 kB] Get:464 http://deb.debian.org/debian sid/main amd64 python3-roman-numerals all 4.1.0-1 [9196 B] Get:465 http://deb.debian.org/debian sid/main amd64 python3-docutils all 0.23+dfsg-2 [433 kB] Get:466 http://deb.debian.org/debian sid/main amd64 python3-imagesize all 2.0.1-1 [14.9 kB] Get:467 http://deb.debian.org/debian sid/main amd64 python3-snowballstemmer all 3.1.1-1 [61.9 kB] Get:468 http://deb.debian.org/debian sid/main amd64 python3-sphinx all 9.1.0-9 [504 kB] Get:469 http://deb.debian.org/debian sid/main amd64 python3-numpydoc all 1.9.0-2 [52.4 kB] Get:470 http://deb.debian.org/debian sid/main amd64 python3-py2bit amd64 0.3.3-1+b3 [21.5 kB] Get:471 http://deb.debian.org/debian sid/main amd64 python3-pybigwig amd64 0.3.25+dfsg-1+b1 [41.2 kB] Get:472 http://deb.debian.org/debian sid/main amd64 python3-pysam amd64 0.24.1+ds-2 [1957 kB] Get:473 http://deb.debian.org/debian sid/main amd64 python3-deeptools all 3.5.6+dfsg-1 [150 kB] Get:474 http://deb.debian.org/debian sid/main amd64 python3-htseq amd64 2.0.9+dfsg-1+b4 [317 kB] Get:475 http://deb.debian.org/debian sid/main amd64 zip amd64 3.0-16 [239 kB] Get:476 http://deb.debian.org/debian sid/main amd64 unzip amd64 6.0-31 [176 kB] Get:477 http://deb.debian.org/debian sid/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:478 http://deb.debian.org/debian sid/main amd64 r-base-core amd64 4.6.1-9 [28.4 MB] Get:479 http://deb.debian.org/debian sid/main amd64 r-cran-generics all 0.1.4-1 [84.2 kB] Get:480 http://deb.debian.org/debian sid/main amd64 r-pkg-team-core-architecture amd64 20260707 [4764 B] Get:481 http://deb.debian.org/debian sid/main amd64 r-bioc-biocgenerics all 0.58.1-2 [649 kB] Get:482 http://deb.debian.org/debian sid/main amd64 r-bioc-s4vectors amd64 0.50.3+dfsg-1 [1851 kB] Get:483 http://deb.debian.org/debian sid/main amd64 r-bioc-iranges amd64 2.46.0-1 [2336 kB] Get:484 http://deb.debian.org/debian sid/main amd64 r-bioc-seqinfo all 1.2.0+dfsg-1 [390 kB] Get:485 http://deb.debian.org/debian sid/main amd64 r-bioc-genomicranges all 1.64.0+dfsg-1 [2087 kB] Get:486 http://deb.debian.org/debian sid/main amd64 r-cran-matrixstats amd64 1.5.0-3 [503 kB] Get:487 http://deb.debian.org/debian sid/main amd64 r-bioc-matrixgenerics all 1.24.0-1 [444 kB] Get:488 http://deb.debian.org/debian sid/main amd64 r-bioc-biobase amd64 2.72.0-1 [2320 kB] Get:489 http://deb.debian.org/debian sid/main amd64 r-cran-lattice amd64 0.23-1-1 [1457 kB] Get:490 http://deb.debian.org/debian sid/main amd64 r-cran-matrix amd64 1.7-6-1 [4192 kB] Get:491 http://deb.debian.org/debian sid/main amd64 r-cran-abind all 1.4-8-1 [68.1 kB] Get:492 http://deb.debian.org/debian sid/main amd64 r-bioc-s4arrays amd64 1.12.1+dfsg-1 [846 kB] Get:493 http://deb.debian.org/debian sid/main amd64 r-bioc-xvector amd64 0.52.0-1 [629 kB] Get:494 http://deb.debian.org/debian sid/main amd64 r-bioc-sparsearray amd64 1.12.3+dfsg-1 [1386 kB] Get:495 http://deb.debian.org/debian sid/main amd64 r-bioc-delayedarray all 0.38.2+dfsg-1 [1999 kB] Get:496 http://deb.debian.org/debian sid/main amd64 r-bioc-summarizedexperiment all 1.42.0+dfsg-1 [1119 kB] Get:497 http://deb.debian.org/debian sid/main amd64 r-cran-formatr all 1.14-3 [152 kB] Get:498 http://deb.debian.org/debian sid/main amd64 r-cran-lambda.r all 1.2.4-3 [119 kB] Get:499 http://deb.debian.org/debian sid/main amd64 r-cran-futile.options all 1.0.1-4 [20.6 kB] Get:500 http://deb.debian.org/debian sid/main amd64 r-cran-futile.logger all 1.4.9-2 [121 kB] Get:501 http://deb.debian.org/debian sid/main amd64 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get:502 http://deb.debian.org/debian sid/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get:503 http://deb.debian.org/debian sid/main amd64 r-cran-bh all 1.90.0-1 [6220 B] Get:504 http://deb.debian.org/debian sid/main amd64 r-cran-cpp11 all 0.5.5-1 [236 kB] Get:505 http://deb.debian.org/debian sid/main amd64 r-bioc-biocparallel amd64 1.46.0-1 [971 kB] Get:506 http://deb.debian.org/debian sid/main amd64 r-cran-locfit amd64 1.5-9.12-2 [513 kB] Get:507 http://deb.debian.org/debian sid/main amd64 r-cran-cli amd64 3.6.6-1 [1391 kB] Get:508 http://deb.debian.org/debian sid/main amd64 r-cran-glue amd64 1.8.1-2 [172 kB] Get:509 http://deb.debian.org/debian sid/main amd64 r-cran-rlang amd64 1.3.0-1 [1742 kB] Get:510 http://deb.debian.org/debian sid/main amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] Get:511 http://deb.debian.org/debian sid/main amd64 r-cran-gtable all 0.3.6+dfsg-2 [228 kB] Get:512 http://deb.debian.org/debian sid/main amd64 r-cran-isoband amd64 0.3.0-1 [1644 kB] Get:513 http://deb.debian.org/debian sid/main amd64 r-cran-s7 amd64 0.2.2-1 [331 kB] Get:514 http://deb.debian.org/debian sid/main amd64 r-cran-farver amd64 2.1.2-3 [1414 kB] Get:515 http://deb.debian.org/debian sid/main amd64 r-cran-labeling all 0.4.3-2 [63.2 kB] Get:516 http://deb.debian.org/debian sid/main amd64 r-cran-r6 all 2.6.1-2 [106 kB] Get:517 http://deb.debian.org/debian sid/main amd64 r-cran-rcolorbrewer all 1.1-3-2 [54.0 kB] Get:518 http://deb.debian.org/debian sid/main amd64 r-cran-viridislite all 0.4.3-1 [1299 kB] Get:519 http://deb.debian.org/debian sid/main amd64 r-cran-scales all 1.4.0-1 [800 kB] Get:520 http://deb.debian.org/debian sid/main amd64 r-cran-vctrs amd64 0.7.3-2 [1983 kB] Get:521 http://deb.debian.org/debian sid/main amd64 r-cran-withr all 3.0.3+dfsg-1 [229 kB] Get:522 http://deb.debian.org/debian sid/main amd64 r-cran-ggplot2 all 4.0.3+dfsg-1 [4923 kB] Get:523 http://deb.debian.org/debian sid/main amd64 r-cran-littler amd64 0.3.23-1 [96.5 kB] Get:524 http://deb.debian.org/debian sid/main amd64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get:525 http://deb.debian.org/debian sid/main amd64 r-cran-rcpp amd64 1.1.2-1 [2168 kB] Get:526 http://deb.debian.org/debian sid/main amd64 r-cran-rcpparmadillo amd64 15.6.2-1-1 [848 kB] Get:527 http://deb.debian.org/debian sid/main amd64 r-bioc-deseq2 amd64 1.52.0+dfsg-1 [1453 kB] Get:528 http://deb.debian.org/debian sid/main amd64 r-cran-curl amd64 8.0.0+dfsg-1 [228 kB] Get:529 http://deb.debian.org/debian sid/main amd64 r-cran-jsonlite amd64 2.0.0+dfsg-2 [447 kB] Get:530 http://deb.debian.org/debian sid/main amd64 r-cran-mime amd64 0.13-2 [47.5 kB] Get:531 http://deb.debian.org/debian sid/main amd64 r-cran-sys amd64 3.4.3-3 [44.4 kB] Get:532 http://deb.debian.org/debian sid/main amd64 r-cran-askpass amd64 1.2.1-3 [24.5 kB] Get:533 http://deb.debian.org/debian sid/main amd64 r-cran-openssl amd64 2.4.2+dfsg-1 [402 kB] Get:534 http://deb.debian.org/debian sid/main amd64 r-cran-httr all 1.4.9+dfsg-1 [470 kB] Get:535 http://deb.debian.org/debian sid/main amd64 r-bioc-ucsc.utils all 1.8.0+dfsg-1 [78.7 kB] Get:536 http://deb.debian.org/debian sid/main amd64 r-bioc-genomeinfodb all 1.48.0+dfsg-1 [3545 kB] Get:537 http://deb.debian.org/debian sid/main amd64 r-cran-xml amd64 3.99-0.25-1 [1737 kB] Get:538 http://deb.debian.org/debian sid/main amd64 r-cran-crayon all 1.5.3-2 [164 kB] Get:539 http://deb.debian.org/debian sid/main amd64 r-bioc-biostrings amd64 2.80.2+dfsg-1 [13.3 MB] Get:540 http://deb.debian.org/debian sid/main amd64 r-cran-bitops amd64 1.1-0-1 [31.0 kB] Get:541 http://deb.debian.org/debian sid/main amd64 r-bioc-rhtslib amd64 3.8.0+dfsg-1 [1344 kB] Get:542 http://deb.debian.org/debian sid/main amd64 r-bioc-rsamtools amd64 2.28.0+dfsg-1+b1 [2625 kB] Get:543 http://deb.debian.org/debian sid/main amd64 r-bioc-cigarillo amd64 1.2.1+dfsg-1 [141 kB] Get:544 http://deb.debian.org/debian sid/main amd64 r-bioc-genomicalignments amd64 1.48.0+dfsg-1 [1941 kB] Get:545 http://deb.debian.org/debian sid/main amd64 r-bioc-biocio all 1.22.0+dfsg-1 [213 kB] Get:546 http://deb.debian.org/debian sid/main amd64 r-cran-rcurl amd64 1.98-1.20+dfsg-1 [807 kB] Get:547 http://deb.debian.org/debian sid/main amd64 r-cran-rjson amd64 0.2.23-1+b1 [101 kB] Get:548 http://deb.debian.org/debian sid/main amd64 r-cran-yaml amd64 2.3.12-2 [120 kB] Get:549 http://deb.debian.org/debian sid/main amd64 r-cran-restfulr amd64 0.0.17-1 [392 kB] Get:550 http://deb.debian.org/debian sid/main amd64 r-bioc-rtracklayer amd64 1.72.0+ds-1+b1 [5183 kB] Get:551 http://deb.debian.org/debian sid/main amd64 r-bioc-tximport all 1.40.0+dfsg-1 [91.2 kB] Get:552 http://deb.debian.org/debian sid/main amd64 r-cran-corrplot all 0.95-2 [134 kB] Get:553 http://deb.debian.org/debian sid/main amd64 r-cran-base64enc amd64 0.1-6-2 [30.7 kB] Get:554 http://deb.debian.org/debian sid/main amd64 r-cran-digest amd64 0.6.39-1 [212 kB] Get:555 http://deb.debian.org/debian sid/main amd64 r-cran-fastmap amd64 1.2.0-3 [79.8 kB] Get:556 http://deb.debian.org/debian sid/main amd64 r-cran-htmltools amd64 0.5.9-2 [377 kB] Get:557 http://deb.debian.org/debian sid/main amd64 r-cran-lazyeval amd64 0.2.3-1 [170 kB] Get:558 http://deb.debian.org/debian sid/main amd64 r-cran-cachem amd64 1.1.0-3 [79.6 kB] Get:559 http://deb.debian.org/debian sid/main amd64 r-cran-jquerylib all 0.1.4+dfsg-6 [14.1 kB] Get:560 http://deb.debian.org/debian sid/main amd64 r-cran-memoise all 2.0.1-2 [54.3 kB] Get:561 http://deb.debian.org/debian sid/main amd64 r-cran-fs amd64 2.1.0+dfsg-1 [259 kB] Get:562 http://deb.debian.org/debian sid/main amd64 r-cran-rappdirs amd64 0.3.4-2 [50.4 kB] Get:563 http://deb.debian.org/debian sid/main amd64 r-cran-sass amd64 0.4.10+dfsg-3 [1023 kB] Get:564 http://deb.debian.org/debian sid/main amd64 r-cran-bslib all 0.10.0+dfsg-1 [5074 kB] Get:565 http://deb.debian.org/debian sid/main amd64 r-cran-commonmark amd64 2.0.0-3 [124 kB] Get:566 http://deb.debian.org/debian sid/main amd64 r-cran-fontawesome all 0.5.3-2 [1311 kB] Get:567 http://deb.debian.org/debian sid/main amd64 r-cran-later amd64 1.4.8+dfsg-3 [145 kB] Get:568 http://deb.debian.org/debian sid/main amd64 r-cran-magrittr amd64 2.0.5-1 [209 kB] Get:569 http://deb.debian.org/debian sid/main amd64 r-cran-otel all 0.2.0-1 [293 kB] Get:570 http://deb.debian.org/debian sid/main amd64 r-cran-promises all 1.5.0+dfsg-3 [302 kB] Get:571 http://deb.debian.org/debian sid/main amd64 r-cran-httpuv amd64 1.6.17+dfsg-1 [545 kB] Get:572 http://deb.debian.org/debian sid/main amd64 r-cran-sourcetools amd64 0.1.7-2-2 [46.6 kB] Get:573 http://deb.debian.org/debian sid/main amd64 r-cran-xtable all 1:1.8-8-1 [737 kB] Get:574 http://deb.debian.org/debian sid/main amd64 r-cran-shiny all 1.13.0+dfsg-1 [3057 kB] Get:575 http://deb.debian.org/debian sid/main amd64 r-cran-crosstalk all 1.2.2+dfsg-1 [181 kB] Get:576 http://deb.debian.org/debian sid/main amd64 r-cran-data.table amd64 1.18.6.1+dfsg-1 [2351 kB] Get:577 http://deb.debian.org/debian sid/main amd64 r-cran-evaluate all 1.0.5-3 [118 kB] Get:578 http://deb.debian.org/debian sid/main amd64 r-cran-xfun amd64 0.61+dfsg-1 [672 kB] Get:579 http://deb.debian.org/debian sid/main amd64 r-cran-highr all 0.12+dfsg-1 [38.3 kB] Get:580 http://deb.debian.org/debian sid/main amd64 r-cran-knitr all 1.51+dfsg-2 [847 kB] Get:581 http://deb.debian.org/debian sid/main amd64 r-cran-tinytex all 0.61-1 [156 kB] Get:582 http://deb.debian.org/debian sid/main amd64 r-cran-rmarkdown all 2.31+dfsg-1 [1472 kB] Get:583 http://deb.debian.org/debian sid/main amd64 r-cran-htmlwidgets all 1.6.4+dfsg-2 [124 kB] Get:584 http://deb.debian.org/debian sid/main amd64 r-cran-dt all 0.34.0+dfsg-1 [246 kB] Get:585 http://deb.debian.org/debian sid/main amd64 r-cran-ggrepel amd64 0.9.8-1 [340 kB] Get:586 http://deb.debian.org/debian sid/main amd64 r-cran-ggsci all 5.2.0-1 [2075 kB] Get:587 http://deb.debian.org/debian sid/main amd64 r-cran-utf8 amd64 1.2.6-2 [138 kB] Get:588 http://deb.debian.org/debian sid/main amd64 r-cran-pillar all 1.11.1+dfsg-1 [457 kB] Get:589 http://deb.debian.org/debian sid/main amd64 r-cran-pkgconfig all 2.0.3-3 [21.7 kB] Get:590 http://deb.debian.org/debian sid/main amd64 r-cran-tibble amd64 3.3.1+dfsg-2 [452 kB] Get:591 http://deb.debian.org/debian sid/main amd64 r-cran-tidyselect amd64 1.2.1+dfsg-3 [224 kB] Get:592 http://deb.debian.org/debian sid/main amd64 r-cran-dplyr amd64 1.2.1-2 [1574 kB] Get:593 http://deb.debian.org/debian sid/main amd64 r-cran-purrr amd64 1.2.2-1 [575 kB] Get:594 http://deb.debian.org/debian sid/main amd64 r-cran-stringi amd64 1.8.9-1 [906 kB] Get:595 http://deb.debian.org/debian sid/main amd64 r-cran-stringr all 1.6.0-1 [323 kB] Get:596 http://deb.debian.org/debian sid/main amd64 r-cran-tidyr amd64 1.3.2-3 [1163 kB] Get:597 http://deb.debian.org/debian sid/main amd64 r-cran-cowplot all 1.2.0+dfsg-1 [653 kB] Get:598 http://deb.debian.org/debian sid/main amd64 r-cran-ggsignif all 0.6.4-2 [587 kB] Get:599 http://deb.debian.org/debian sid/main amd64 r-cran-gridextra all 2.3.1-1 [505 kB] Get:600 http://deb.debian.org/debian sid/main amd64 r-cran-polynom all 1.4-1+dfsg-2 [94.5 kB] Get:601 http://deb.debian.org/debian sid/main amd64 r-cran-backports amd64 1.5.1-2 [122 kB] Get:602 http://deb.debian.org/debian sid/main amd64 r-cran-broom all 1.0.13+dfsg-2 [1662 kB] Get:603 http://deb.debian.org/debian sid/main amd64 r-cran-cardata all 3.0.6-1 [1678 kB] Get:604 http://deb.debian.org/debian sid/main amd64 r-cran-formula all 1.2-6-1 [72.9 kB] Get:605 http://deb.debian.org/debian sid/main amd64 r-cran-mass amd64 7.3-66-1 [1113 kB] Get:606 http://deb.debian.org/debian sid/main amd64 r-cran-nlme amd64 3.1.171-1 [2330 kB] Get:607 http://deb.debian.org/debian sid/main amd64 r-cran-mgcv amd64 1.9-4-1 [3608 kB] Get:608 http://deb.debian.org/debian sid/main amd64 r-cran-nnet amd64 7.3-21-1 [113 kB] Get:609 http://deb.debian.org/debian sid/main amd64 r-cran-rbibutils amd64 2.4.1-3 [1008 kB] Get:610 http://deb.debian.org/debian sid/main amd64 r-cran-rdpack all 2.6.6-1 [638 kB] Get:611 http://deb.debian.org/debian sid/main amd64 r-cran-boot all 1.3-32-1 [639 kB] Get:612 http://deb.debian.org/debian sid/main amd64 r-cran-minqa amd64 1.2.8-1 [118 kB] Get:613 http://deb.debian.org/debian sid/main amd64 r-cran-nloptr amd64 2.2.1-2+b1 [256 kB] Get:614 http://deb.debian.org/debian sid/main amd64 r-cran-reformulas all 0.4.4-1 [150 kB] Get:615 http://deb.debian.org/debian sid/main amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1411 kB] Get:616 http://deb.debian.org/debian sid/main amd64 r-cran-statmod amd64 1.5.2-1 [307 kB] Get:617 http://deb.debian.org/debian sid/main amd64 r-cran-lme4 amd64 2.0-6-1 [5129 kB] Get:618 http://deb.debian.org/debian sid/main amd64 r-cran-numderiv all 2016.8-1.1-3 [115 kB] Get:619 http://deb.debian.org/debian sid/main amd64 r-cran-deriv amd64 4.3.5-1 [203 kB] Get:620 http://deb.debian.org/debian sid/main amd64 r-cran-colorspace amd64 2.1-4+dfsg-1 [1730 kB] Get:621 http://deb.debian.org/debian sid/main amd64 r-cran-fracdiff amd64 1.5-4-1 [114 kB] Get:622 http://deb.debian.org/debian sid/main amd64 r-cran-zoo amd64 1.9-1-1 [954 kB] Get:623 http://deb.debian.org/debian sid/main amd64 r-cran-lmtest amd64 0.9.40-1 [399 kB] Get:624 http://deb.debian.org/debian sid/main amd64 r-cran-timedate amd64 4052.112-2 [1302 kB] Get:625 http://deb.debian.org/debian sid/main amd64 r-cran-urca amd64 1.3-4-1 [1052 kB] Get:626 http://deb.debian.org/debian sid/main amd64 r-cran-forecast amd64 9.0.2-2 [1627 kB] Get:627 http://deb.debian.org/debian sid/main amd64 r-cran-modelr all 0.1.11-3 [208 kB] Get:628 http://deb.debian.org/debian sid/main amd64 r-cran-microbenchmark amd64 1.5.0-1 [67.1 kB] Get:629 http://deb.debian.org/debian sid/main amd64 r-cran-doby all 4.7.2-2 [4759 kB] Get:630 http://deb.debian.org/debian sid/main amd64 r-cran-pbkrtest all 0.5.5-2 [222 kB] Get:631 http://deb.debian.org/debian sid/main amd64 r-cran-sparsem amd64 1.84-2-1+b1 [794 kB] Get:632 http://deb.debian.org/debian sid/main amd64 r-cran-matrixmodels all 0.5-4-2 [357 kB] Get:633 http://deb.debian.org/debian sid/main amd64 r-cran-survival amd64 3.8-12-1 [7862 kB] Get:634 http://deb.debian.org/debian sid/main amd64 r-cran-class amd64 7.3-24-1 [89.1 kB] Get:635 http://deb.debian.org/debian sid/main amd64 r-cran-proxy amd64 0.4-29-1 [181 kB] Get:636 http://deb.debian.org/debian sid/main amd64 r-cran-e1071 amd64 1.7-17-1 [579 kB] Get:637 http://deb.debian.org/debian sid/main amd64 r-cran-iterators all 1.0.14-1 [337 kB] Get:638 http://deb.debian.org/debian sid/main amd64 r-cran-foreach all 1.5.2-1 [122 kB] Get:639 http://deb.debian.org/debian sid/main amd64 r-cran-modelmetrics amd64 1.2.2.2-2 [149 kB] Get:640 http://deb.debian.org/debian sid/main amd64 r-cran-plyr amd64 1.8.9-2 [792 kB] Get:641 http://deb.debian.org/debian sid/main amd64 r-cran-proc amd64 1.19.1-1 [1168 kB] Get:642 http://deb.debian.org/debian sid/main amd64 r-cran-tzdb amd64 0.5.0-1 [515 kB] Get:643 http://deb.debian.org/debian sid/main amd64 r-cran-clock amd64 0.7.4-2 [1835 kB] Get:644 http://deb.debian.org/debian sid/main amd64 r-cran-gower amd64 1.0.2-2 [208 kB] Get:645 http://deb.debian.org/debian sid/main amd64 r-cran-sparsevctrs amd64 0.3.6-2 [214 kB] Get:646 http://deb.debian.org/debian sid/main amd64 r-cran-hardhat all 1.4.3+dfsg-1 [724 kB] Get:647 http://deb.debian.org/debian sid/main amd64 r-cran-rpart amd64 4.1.27-1 [689 kB] Get:648 http://deb.debian.org/debian sid/main amd64 r-cran-shape all 1.4.6.1-2 [751 kB] Get:649 http://deb.debian.org/debian sid/main amd64 r-cran-diagram all 1.6.5-3 [662 kB] Get:650 http://deb.debian.org/debian sid/main amd64 r-cran-kernsmooth amd64 2.23-27-1 [93.4 kB] Get:651 http://deb.debian.org/debian sid/main amd64 r-cran-globals all 0.19.1-2 [165 kB] Get:652 http://deb.debian.org/debian sid/main amd64 r-cran-listenv all 1.1.0+dfsg-1 [128 kB] Get:653 http://deb.debian.org/debian sid/main amd64 r-cran-parallelly amd64 1.47.0-1 [608 kB] Get:654 http://deb.debian.org/debian sid/main amd64 r-cran-future all 1.75.0+dfsg-1 [947 kB] Get:655 http://deb.debian.org/debian sid/main amd64 r-cran-future.apply all 1.20.2+dfsg-1 [192 kB] Get:656 http://deb.debian.org/debian sid/main amd64 r-cran-progressr all 1.0.0-1 [506 kB] Get:657 http://deb.debian.org/debian sid/main amd64 r-cran-squarem all 2026.1-1 [180 kB] Get:658 http://deb.debian.org/debian sid/main amd64 r-cran-lava all 1.9.3+dfsg-1 [2350 kB] Get:659 http://deb.debian.org/debian sid/main amd64 r-cran-prodlim amd64 2026.03.11-1 [530 kB] Get:660 http://deb.debian.org/debian sid/main amd64 r-cran-ipred amd64 0.9-16-1 [394 kB] Get:661 http://deb.debian.org/debian sid/main amd64 r-cran-timechange amd64 0.4.0-1 [176 kB] Get:662 http://deb.debian.org/debian sid/main amd64 r-cran-lubridate amd64 1.9.5+dfsg-2 [1020 kB] Get:663 http://deb.debian.org/debian sid/main amd64 r-cran-recipes all 1.3.3+dfsg-2 [2168 kB] Get:664 http://deb.debian.org/debian sid/main amd64 r-cran-reshape2 amd64 1.4.5-1 [120 kB] Get:665 http://deb.debian.org/debian sid/main amd64 r-cran-caret amd64 7.0-1+dfsg-2 [3471 kB] Get:666 http://deb.debian.org/debian sid/main amd64 r-cran-conquer amd64 1.3.3-1 [471 kB] Get:667 http://deb.debian.org/debian sid/main amd64 r-cran-quantreg amd64 6.1-1 [1442 kB] Get:668 http://deb.debian.org/debian sid/main amd64 r-cran-car all 3.1-5-1 [1535 kB] Get:669 http://deb.debian.org/debian sid/main amd64 r-cran-rstatix all 1.1.0-1 [1121 kB] Get:670 http://deb.debian.org/debian sid/main amd64 r-cran-ggpubr all 1.0.0-1 [2412 kB] Get:671 http://deb.debian.org/debian sid/main amd64 r-cran-miniui all 0.1.2-1 [37.4 kB] Get:672 http://deb.debian.org/debian sid/main amd64 r-cran-shinyjs all 2.1.1-1 [987 kB] Get:673 http://deb.debian.org/debian sid/main amd64 r-cran-colourpicker all 1.3.0+dfsg-2 [1213 kB] Get:674 http://deb.debian.org/debian sid/main amd64 r-cran-plotly all 4.12.1+dfsg-1 [4441 kB] Get:675 http://deb.debian.org/debian sid/main amd64 r-cran-gprofiler2 all 0.2.4+dfsg-1 [128 kB] Get:676 http://deb.debian.org/debian sid/main amd64 r-cran-pheatmap all 1.0.13-1 [80.1 kB] Get:677 http://deb.debian.org/debian sid/main amd64 salmon amd64 1.10.3+ds1-3+b2 [3472 kB] Get:678 http://deb.debian.org/debian sid/main amd64 samtools amd64 1.24-2 [730 kB] Get:679 http://deb.debian.org/debian sid/main amd64 python3-configargparse all 1.7-4 [31.3 kB] Get:680 http://deb.debian.org/debian sid/main amd64 python3-connection-pool all 0.0.3-2 [5584 B] Get:681 http://deb.debian.org/debian sid/main amd64 python3-datrie amd64 0.8.3-2+b2 [131 kB] Get:682 http://deb.debian.org/debian sid/main amd64 python3-smmap all 6.0.0-2 [20.1 kB] Get:683 http://deb.debian.org/debian sid/main amd64 python3-gitdb all 4.0.12-2 [45.5 kB] Get:684 http://deb.debian.org/debian sid/main amd64 python3-git all 3.2.1-1 [164 kB] Get:685 http://deb.debian.org/debian sid/main amd64 python3-psutil amd64 7.2.2-2 [154 kB] Get:686 http://deb.debian.org/debian sid/main amd64 python3-pulp all 2.7.0+dfsg-5 [71.7 kB] Get:687 http://deb.debian.org/debian sid/main amd64 python3-retry all 0.9.2-5 [7256 B] Get:688 http://deb.debian.org/debian sid/main amd64 python3-wrapt amd64 2.3.0-1 [94.3 kB] Get:689 http://deb.debian.org/debian sid/main amd64 python3-smart-open all 7.5.1-2 [67.8 kB] Get:690 http://deb.debian.org/debian sid/main amd64 python3-stopit all 1.1.2-4 [13.0 kB] Get:691 http://deb.debian.org/debian sid/main amd64 python3-tabulate all 0.10.0-1 [51.2 kB] Get:692 http://deb.debian.org/debian sid/main amd64 python3-throttler all 1.2.3-1 [8600 B] Get:693 http://deb.debian.org/debian sid/main amd64 python3-toposort all 1.10-2 [7336 B] Get:694 http://deb.debian.org/debian sid/main amd64 python3-dpath all 2.2.0-2 [20.1 kB] Get:695 http://deb.debian.org/debian sid/main amd64 python3-plac all 1.4.5-3 [87.0 kB] Get:696 http://deb.debian.org/debian sid/main amd64 python3-yte all 1.5.4-1 [13.6 kB] Get:697 http://deb.debian.org/debian sid/main amd64 snakemake all 7.32.4-12 [314 kB] Get:698 http://deb.debian.org/debian sid/main amd64 trim-galore all 0.6.10-1 [17.8 MB] Get:699 http://deb.debian.org/debian sid/main amd64 pigx-rnaseq all 0.1.1-4 [61.1 kB] Preconfiguring packages ... Fetched 731 MB in 4min 4s (2997 kB/s) Selecting previously unselected package libsystemd-shared:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4950 files and directories currently installed.) Preparing to unpack .../libsystemd-shared_262.1-1_amd64.deb ... Unpacking libsystemd-shared:amd64 (262.1-1) ... Setting up libsystemd-shared:amd64 (262.1-1) ... Selecting previously unselected package systemd. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4958 files and directories currently installed.) Preparing to unpack .../systemd_262.1-1_amd64.deb ... Unpacking systemd (262.1-1) ... Setting up systemd (262.1-1) ... Created symlink '/etc/systemd/system/multi-user.target.wants/remote-fs.target' → '/usr/lib/systemd/system/remote-fs.target'. Created symlink '/etc/systemd/system/sysinit.target.wants/systemd-pstore.service' → '/usr/lib/systemd/system/systemd-pstore.service'. Created symlink '/etc/systemd/system/autovt@.service' → '/usr/lib/systemd/system/getty@.service'. Created symlink '/etc/systemd/system/getty.target.wants/getty@tty1.service' → '/usr/lib/systemd/system/getty@.service'. Initializing machine ID from random generator. Creating group 'lpadmin' with GID 999. Creating group 'systemd-journal' with GID 998. Creating group 'systemd-network' with GID 997. Creating user 'systemd-network' (systemd Network Management) with UID 997 and GID 997. [ESC][0;1;31m"/home" already exists and is not a directory.[ESC][0m Selecting previously unselected package systemd-sysv. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5920 files and directories currently installed.) Preparing to unpack .../0-systemd-sysv_262.1-1_amd64.deb ... Unpacking systemd-sysv (262.1-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../1-libexpat1_2.9.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.9.0-1) ... Selecting previously unselected package libzopfli1. Preparing to unpack .../2-libzopfli1_1.0.3-3_amd64.deb ... Unpacking libzopfli1 (1.0.3-3) ... Selecting previously unselected package pigz. Preparing to unpack .../3-pigz_2.8-2_amd64.deb ... Unpacking pigz (2.8-2) ... Selecting previously unselected package libpython3.14-minimal:amd64. Preparing to unpack .../4-libpython3.14-minimal_3.14.8-1_amd64.deb ... Unpacking libpython3.14-minimal:amd64 (3.14.8-1) ... Selecting previously unselected package python3.14-minimal. Preparing to unpack .../5-python3.14-minimal_3.14.8-1_amd64.deb ... Unpacking python3.14-minimal (3.14.8-1) ... Setting up libpython3.14-minimal:amd64 (3.14.8-1) ... Setting up libexpat1:amd64 (2.9.0-1) ... Setting up python3.14-minimal (3.14.8-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6306 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.14.7-3_amd64.deb ... Unpacking python3-minimal (3.14.7-3) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.6_all.deb ... Unpacking netbase (6.6) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../03-libffi8_3.8.0-2_amd64.deb ... Unpacking libffi8:amd64 (3.8.0-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../04-libncursesw6_6.6+20260608-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.6+20260608-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../05-readline-common_8.3-4_all.deb ... Unpacking readline-common (8.3-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../06-libreadline8t64_8.3-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../07-libsqlite3-0_3.53.4-2_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.53.4-2) ... Selecting previously unselected package libpython3.14-stdlib:amd64. Preparing to unpack .../08-libpython3.14-stdlib_3.14.8-1_amd64.deb ... Unpacking libpython3.14-stdlib:amd64 (3.14.8-1) ... Selecting previously unselected package python3.14. Preparing to unpack .../09-python3.14_3.14.8-1_amd64.deb ... Unpacking python3.14 (3.14.8-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../10-libpython3-stdlib_3.14.7-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.14.7-3) ... Setting up python3-minimal (3.14.7-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6836 files and directories currently installed.) Preparing to unpack .../000-python3_3.14.7-3_amd64.deb ... Unpacking python3 (3.14.7-3) ... Selecting previously unselected package python3-numpy-dev:amd64. Preparing to unpack .../001-python3-numpy-dev_1%3a2.4.6+ds-5_amd64.deb ... Unpacking python3-numpy-dev:amd64 (1:2.4.6+ds-5) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../002-libblas3_3.12.1-8_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-8) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../003-libgfortran5_16.2.0-3_amd64.deb ... Unpacking libgfortran5:amd64 (16.2.0-3) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../004-liblapack3_3.12.1-8_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-8) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../005-python3-numpy_1%3a2.4.6+ds-5_amd64.deb ... Unpacking python3-numpy (1:2.4.6+ds-5) ... Selecting previously unselected package libproc2-1:amd64. Preparing to unpack .../006-libproc2-1_2%3a4.0.7-1_amd64.deb ... Unpacking libproc2-1:amd64 (2:4.0.7-1) ... Selecting previously unselected package procps. Preparing to unpack .../007-procps_2%3a4.0.7-1_amd64.deb ... Unpacking procps (2:4.0.7-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../008-sensible-utils_0.0.26_all.deb ... 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Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../358-libtirpc3t64_1.3.7+ds-1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.7+ds-1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../359-libxft2_2.3.6-1+b5_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b5) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../360-libxss1_1%3a1.2.3-1+b4_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1+b4) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../361-libtk8.6_8.6.18-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.18-1) ... Selecting previously unselected package libuv1t64:amd64. 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Setting up libkeyutils1:amd64 (1.6.3-6+b2) ... Setting up libapparmor1:amd64 (4.1.8-3) ... Setting up pci.ids (0.0~2026.09.23-1) ... Setting up libxcb1:amd64 (1.17.0-2+b2) ... Setting up fonts-mathjax (2.7.9+dfsg-1) ... Setting up libxcb-xfixes0:amd64 (1.17.0-2+b2) ... Setting up liblerc4:amd64 (4.2.0+ds-1) ... Setting up libgdbm6t64:amd64 (1.26-1+b2) ... Setting up libboost-iostreams1.92.0:amd64 (1.92.0-4) ... Setting up hicolor-icon-theme (0.18-2) ... Setting up libjs-mathjax (2.7.9+dfsg-1) ... Setting up libgpg-error0:amd64 (1.61-5) ... Setting up java-common (0.77) ... Setting up libdatrie1:amd64 (0.2.14-2) ... Setting up libgdbm-compat4t64:amd64 (1.26-1+b2) ... Setting up libjs-popper.js (1.16.1+ds-7) ... Setting up libxcb-render0:amd64 (1.17.0-2+b2) ... Setting up libyaml-0-2:amd64 (0.2.5-2+b1) ... Setting up libjs-sifter.js (0.6.0+dfsg-3) ... Setting up libglvnd0:amd64 (1.7.0-3+b1) ... Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-7) ... Setting up libxml2-16:amd64 (2.15.4+dfsg-1) ... Setting up libtirpc-common (1.3.7+ds-1) ... Setting up fonts-lyx (2.5.3-2) ... Setting up libxcb-glx0:amd64 (1.17.0-2+b2) ... Setting up unzip (6.0-31) ... Setting up libbrotli1:amd64 (1.2.0-4+b1) ... Setting up libedit2:amd64 (3.1-20260512-1) ... Setting up libsqlite3-0:amd64 (3.53.4-2) ... Setting up libnlopt1:amd64 (2.11.0-2) ... Setting up libisal2:amd64 (2.31.1-3) ... Setting up libgdk-pixbuf2.0-common (2.44.8+dfsg-1) ... Setting up libuv1t64:amd64 (1.53.0-1) ... Setting up binutils-common:amd64 (2.47-6) ... Setting up x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libsensors-config (1:3.6.2-2) ... Setting up node-html5shiv (3.7.3+dfsg-5) ... Setting up libnghttp2-14:amd64 (1.70.0-1) ... Setting up libsframe3:amd64 (2.47-6) ... Setting up libdeflate0:amd64 (1.25-1) ... Setting up linux-libc-dev (7.2.11-1) ... Setting up libctf-nobfd0:amd64 (2.47-6) ... Setting up liblog4j1.2-java (1.2.17-11) ... Setting up libgcrypt20:amd64 (1.12.4-2) ... Setting up libqhull-r8.0:amd64 (2020.2-9) ... Setting up xkb-data (2.48-1) ... Setting up libjs-microplugin.js (0.0.3+dfsg-2) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b2) ... Setting up libcom-err2:amd64 (1.47.4-1+b2) ... Setting up libjemalloc2:amd64 (5.3.1-2) ... Setting up libboost-regex1.92.0:amd64 (1.92.0-4) ... Setting up libgomp1:amd64 (16.2.0-3) ... Setting up bzip2 (1.0.8-6+b2) ... Setting up libjs-modernizr (3.13.0-0.1) ... Setting up libtext-wrapi18n-perl (0.06-11) ... Setting up libjbig0:amd64 (2.1-6.1+b3) ... Setting up libcap2:amd64 (1:2.78-1+b1) ... Setting up libelf1t64:amd64 (0.196-1) ... Setting up python-babel-localedata (2.18.0+git2026-08-12-3) ... Setting up libjansson4:amd64 (2.15.1-1) ... Setting up libsnappy1v5:amd64 (1.3.1-3) ... Setting up libkrb5support0:amd64 (1.22.1-3) ... Setting up libjs-es5-shim (4.6.7-2) ... Setting up librav1e0.8:amd64 (0.8.1-12) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-12) ... Setting up libicu78:amd64 (78.3-2) ... Setting up libxcb-present0:amd64 (1.17.0-2+b2) ... Setting up unicode-data (17.0.0-2) ... Setting up fastp (1.0.1+dfsg-1) ... Setting up libcommons-collections3-java (3.2.2-4) ... Setting up libasound2-data (1.2.16.1-2) ... Setting up zip (3.0-16) ... Setting up librhino-java (1.7.15.1-0.1) ... Setting up libz3-4:amd64 (4.13.3-1.1) ... Setting up libblas3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libasound2t64:amd64 (1.2.16.1-2) ... Setting up libabsl20260526:amd64 (20260526.0-2+b1) ... Setting up libjpeg62-turbo:amd64 (1:3.1.3-4) ... Setting up libzopfli1 (1.0.3-3) ... Setting up libjaxen-java (1.2.0-1) ... Setting up libproc2-1:amd64 (2:4.0.7-1) ... Setting up libx11-data (2:1.8.13-1) ... Setting up make (4.4.1-3) ... Setting up libepoxy0:amd64 (1.5.10-2+b2) ... Setting up libmpfr6:amd64 (4.2.2-3) ... Setting up libnspr4:amd64 (2:4.40-1) ... Setting up libxcb-sync1:amd64 (1.17.0-2+b2) ... Setting up libapache-pom-java (33-2) ... Setting up libavahi-common-data:amd64 (0.8-18) ... Setting up libncurses6:amd64 (6.6+20260608-2) ... Setting up libdbus-1-3:amd64 (1.16.2-8) ... Setting up xz-utils (5.8.4-1) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up libfribidi0:amd64 (1.0.16-5+b1) ... Setting up libboost-program-options1.92.0:amd64 (1.92.0-4) ... Setting up libquadmath0:amd64 (16.2.0-3) ... Setting up libimagequant0:amd64 (4.4.1-1+b2) ... Setting up libjs-d3 (3.5.17-4) ... Setting up libunistring5:amd64 (1.4.2-1) ... Setting up fonts-dejavu-mono (2.37-9) ... Setting up r-pkg-team-core-architecture (20260707) ... Setting up libpng16-16t64:amd64 (1.6.59-1) ... Setting up libhwloc15:amd64 (2.15.0-2) ... Setting up libxml-commons-resolver1.1-java (1.2-11) ... Setting up libmpc3:amd64 (1.3.1-3) ... Setting up python3-numpy-dev:amd64 (1:2.4.6+ds-5) ... Setting up libatomic1:amd64 (16.2.0-3) ... Setting up patch (2.8-2) ... Setting up libtcl8.6:amd64 (8.6.18+dfsg-1) ... Setting up fonts-dejavu-core (2.37-9) ... Setting up libjbzip2-java (0.9.1-8) ... Setting up libpcsclite1:amd64 (2.5.3-1) ... Setting up libsensors5:amd64 (1:3.6.2-2+b2) ... Setting up libncursesw6:amd64 (6.6+20260608-2) ... Setting up libk5crypto3:amd64 (1.22.1-3) ... Setting up libsvtav1enc4:amd64 (4.2.0+dfsg-1) ... Setting up libhamcrest-java (2.2-2) ... Setting up libjs-sphinxdoc (9.1.0-9) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-12) ... Setting up libgfortran5:amd64 (16.2.0-3) ... Setting up libvulkan1:amd64 (1.4.363.0-1) ... Setting up libnghttp3-9:amd64 (1.17.0-1) ... Setting up libwebp7:amd64 (1.6.0-0.1) ... Setting up libubsan1:amd64 (16.2.0-3) ... Setting up libgif7:amd64 (6.1.3-1) ... 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Setting up git-man (1:2.55.0-1) ... Setting up libx11-6:amd64 (2:1.8.13-1) ... Setting up libthai-data (0.1.30-3) ... Setting up netbase (6.6) ... Setting up node-bootstrap-sass (3.4.3-2) ... Setting up libngtcp2-16:amd64 (1.24.0-1) ... Setting up libcommons-math3-java (3.6.1-4) ... Setting up sgml-base (1.31+nmu1) ... Setting up libjs-prettify (2015.12.04+dfsg-3) ... Setting up libkrb5-3:amd64 (1.22.1-3) ... Setting up libwayland-egl1:amd64 (1.26.0-1) ... Setting up libjs-bootstrap4 (4.6.2+dfsg-3) ... Setting up libmbedcrypto16:amd64 (3.6.7-3) ... Setting up libpaper2:amd64 (2.2.5-0.4) ... Setting up libssh2-1t64:amd64 (1.11.1-6) ... Setting up pandoc-data (3.11-1) ... Setting up libtsan2:amd64 (16.2.0-3) ... Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Setting up libxerces2-java (2.12.2-1) ... Setting up libbinutils:amd64 (2.47-6) ... Setting up dbus-system-bus-common (1.16.2-8) ... Creating group 'messagebus' with GID 996. Creating user 'messagebus' (System Message Bus) with UID 996 and GID 996. Setting up perl-modules-5.42 (5.42.3-1) ... Setting up libisl23:amd64 (0.28-1) ... Setting up libde265-0:amd64 (1.1.3-1+b1) ... Setting up libc-dev-bin (2.43-7) ... Setting up python-matplotlib-data (3.10.9+dfsg1-2) ... Setting up openssl (3.6.5-1) ... Setting up libwebpmux3:amd64 (1.6.0-0.1) ... Setting up node-normalize.css (8.0.1-5.1) ... Setting up libdrm-common (2.4.134-3) ... Setting up libyuv0:amd64 (0.0.1974.20261008-1) ... Setting up libsnappy-jni (1.1.10.8-1) ... Setting up libezmorph-java (1.0.6-4) ... Setting up libxcomposite1:amd64 (1:0.4.6-1+b2) ... Setting up libjxl0.11:amd64 (0.11.2-5.1) ... Setting up readline-common (8.3-4) ... Setting up fonts-font-awesome (7.3.0+dfsg-1) ... Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libcc1-0:amd64 (16.2.0-3) ... Setting up libldap2:amd64 (2.6.14+dfsg-2) ... Setting up dbus-bin (1.16.2-8) ... Setting up liblsan0:amd64 (16.2.0-3) ... Setting up libjs-bootstrap (3.4.1+dfsg-7) ... Setting up libitm1:amd64 (16.2.0-3) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Setting up libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... Setting up libxkbcommon0:amd64 (1.13.1-1) ... Setting up libwayland-client0:amd64 (1.26.0-1) ... Setting up libctf0:amd64 (2.47-6) ... Setting up bubblewrap (0.13.1-1) ... Setting up libxcb-dri3-0:amd64 (1.17.0-2+b2) ... Setting up libx11-xcb1:amd64 (2:1.8.13-1) ... Setting up libice6:amd64 (2:1.1.1-1+b2) ... Setting up libpciaccess0:amd64 (0.19-2) ... Setting up libavif16:amd64 (1.4.2-1) ... Setting up liblapack3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxdamage1:amd64 (1:1.1.7-1+b1) ... Setting up libxrender1:amd64 (1:0.9.12-1+b2) ... Setting up libgcc-16-dev:amd64 (16.2.0-3) ... Setting up fontconfig-config (2.17.1-5) ... Setting up libwebpdemux2:amd64 (1.6.0-0.1) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Setting up libcommons-parent-java (56-1) ... Setting up libavahi-common3:amd64 (0.8-18) ... Setting up libcommons-logging-java (1.3.0-2) ... Setting up libxext6:amd64 (2:1.3.4-1+b4) ... Setting up libidn2-0:amd64 (2.3.8-5) ... Setting up libnss3:amd64 (2:3.131-1) ... Setting up dbus-daemon (1.16.2-8) ... Setting up libperl5.42:amd64 (5.42.3-1) ... Setting up libpaper-utils (2.2.5-0.4) ... Setting up libxom-java (1.4.6-2) ... Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... Setting up libxxf86vm1:amd64 (1:1.1.4-2+b1) ... Setting up libtbbbind-2-5:amd64 (2023.1.0-3) ... Setting up libcommons-jexl2-java (2.1.1-6) ... Setting up coinor-libcoinutils3v5:amd64 (2.11.12+ds-1+b2) ... Setting up libthai0:amd64 (0.1.30-3) ... Setting up ca-certificates (20260816) ... Updating certificates in /etc/ssl/certs... 121 added, 0 removed; done. Setting up perl (5.42.3-1) ... Setting up libglib2.0-0t64:amd64 (2.90.1-2) ... Setting up libgprofng0:amd64 (2.47-6) ... Setting up libmbedx509-7:amd64 (3.6.7-3) ... Setting up libjs-jquery-ui (1.14.2+dfsg-1) ... Setting up pandoc (3.11-1) ... Setting up libfreetype6:amd64 (2.14.3+dfsg-3) ... Setting up libxfixes3:amd64 (1:6.0.0-2+b5) ... Setting up libjs-jquery-metadata (12-4) ... Setting up dbus (1.16.2-8) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up shared-mime-info (2.4-5+b3) ... Setting up libp11-kit0:amd64 (0.26.5-1) ... Setting up libxinerama1:amd64 (2:1.1.4-3+b5) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-3) ... Setting up libxrandr2:amd64 (2:1.5.4-1+b4) ... Setting up libcommons-collections4-java (4.6.0-1) ... Setting up ucf (3.0056) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Setting up coinor-libosi1v5:amd64 (0.108.11+ds-1+b2) ... Setting up libcommons-lang3-java (3.20.0-1) ... Setting up libdpkg-perl (1.23.11) ... Setting up libmbedtls21:amd64 (3.6.7-3) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up libdrm2:amd64 (2.4.134-3) ... Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-5) ... Setting up libwayland-cursor0:amd64 (1.26.0-1) ... Setting up xml-core (0.21) ... Setting up libjson-perl (4.10000-1) ... Setting up libpam-systemd:amd64 (262.1-1) ... Setting up libcommons-beanutils-java (1.10.1-1.1) ... Setting up libc6-dev:amd64 (2.43-7) ... Setting up libharfbuzz0b:amd64 (12.3.2-2+b2) ... Setting up libsnappy-java (1.1.10.8-1) ... Setting up cpp-16-x86-64-linux-gnu (16.2.0-3) ... Setting up libxss1:amd64 (1:1.2.3-1+b4) ... Setting up libfontconfig1:amd64 (2.17.1-5) ... Setting up ca-certificates-java (20260311) ... No JRE found. Skipping Java certificates setup. Setting up libcommons-codec-java (1.22.1-1) ... Setting up libsm6:amd64 (2:1.2.6-1+b2) ... Setting up libavahi-client3:amd64 (0.8-18) ... Setting up libxres1:amd64 (2:1.2.1-2) ... Setting up binutils-x86-64-linux-gnu (2.47-6) ... Setting up libdrm-amdgpu1:amd64 (2.4.134-3) ... Setting up cpp-x86-64-linux-gnu (4:16.1.0-3) ... Setting up libgnutls30t64:amd64 (3.8.13-1) ... Setting up libslf4j-java (1.7.36-1) ... Setting up fontconfig (2.17.1-5) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1+b5) ... Setting up libatk1.0-0t64:amd64 (2.62.1-1) ... Setting up user-session-migration (0.5.2) ... Created symlink '/etc/systemd/user/graphical-session-pre.target.wants/user-session-migration.service' → '/usr/lib/systemd/user/user-session-migration.service'. Setting up libxi6:amd64 (2:1.8.3-1) ... Setting up libtirpc3t64:amd64 (1.3.7+ds-1) ... Setting up libpython3.14-stdlib:amd64 (3.14.8-1) ... Setting up libcommons-io-java (2.22.0-1) ... Setting up libxtst6:amd64 (2:1.2.5-1+b2) ... Setting up libtk8.6:amd64 (8.6.18-1) ... Setting up libxcursor1:amd64 (1:1.2.3-1+b2) ... Setting up openjdk-25-jre-headless:amd64 (25.0.5~7ea-2) ... update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-25-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libpango-1.0-0:amd64 (1.58.2-1) ... Setting up libdrm-intel1:amd64 (2.4.134-3) ... Setting up libpsl5t64:amd64 (0.23.3-1) ... Setting up libcloudproviders0:amd64 (0.4.1-1) ... Setting up gcc-16-x86-64-linux-gnu (16.2.0-3) ... Setting up libtbb12:amd64 (2023.1.0-3) ... Setting up libfindbin-libs-perl (4.0.4-1) ... Setting up binutils (2.47-6) ... Setting up libcairo2:amd64 (1.18.4-3+b1) ... Setting up libcolord2:amd64 (1.4.8-3) ... Setting up dpkg-dev (1.23.11) ... Setting up liberror-perl (0.17030-1) ... Setting up libdconf1:amd64 (51.0-2) ... Setting up dbus-user-session (1.16.2-8) ... Setting up coinor-libclp1:amd64 (1.17.10+ds-1+b2) ... Setting up libatspi2.0-0t64:amd64 (2.62.1-1) ... Setting up libraqm0:amd64 (0.10.5-1) ... Setting up sphinx-common (9.1.0-9) ... Setting up libstdc++-16-dev:amd64 (16.2.0-3) ... Setting up libxt6t64:amd64 (1:1.2.1-1.3+b2) ... Setting up g++-16-x86-64-linux-gnu (16.2.0-3) ... Setting up libpython3.14:amd64 (3.14.8-1) ... Setting up libharfbuzz-subset0:amd64 (12.3.2-2+b2) ... Setting up cpp-16 (16.2.0-3) ... Setting up libcairo-gobject2:amd64 (1.18.4-3+b1) ... Setting up coinor-libcgl1:amd64 (0.60.10+ds-1) ... Setting up python3.14 (3.14.8-1) ... Setting up libpangoft2-1.0-0:amd64 (1.58.2-1) ... Setting up libcups2t64:amd64 (2.4.20-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.24.0-1) ... Setting up libpangocairo-1.0-0:amd64 (1.58.2-1) ... Setting up libpython3-stdlib:amd64 (3.14.7-3) ... Setting up libatk-bridge2.0-0t64:amd64 (2.62.1-1) ... Setting up libcurl4-gnutls:amd64 (8.23.0-1) ... Setting up mesa-libgallium:amd64 (26.2.5-1) ... Setting up python3.14-tk (3.14.8-1) ... Setting up gcc-x86-64-linux-gnu (4:16.1.0-3) ... Setting up libcommons-compress-java (1.27.1-2) ... Setting up libcurl4t64:amd64 (8.23.0-1) ... Setting up libgbm1:amd64 (26.2.5-1) ... Setting up libgl1-mesa-dri:amd64 (26.2.5-1) ... Setting up libcurl3t64-gnutls:amd64 (8.23.0-1) ... Setting up gcc-16 (16.2.0-3) ... Setting up python3-tk (3.14.7-3) ... Setting up dconf-service (51.0-2) ... Setting up python3 (3.14.7-3) ... Setting up python3-click (8.3.3-3) ... Setting up python3-networkx (3.4.2-6) ... Setting up python3-markupsafe (3.0.3-2+b1) ... Setting up python3-uc-micro (2.0.0-1) ... Setting up python3-plac (1.4.5-3) ... Setting up python3-platformdirs (4.11.9-1) ... Setting up python3-psutil (7.2.2-2) ... Setting up python3-zopfli (0.4.3-2) ... Setting up python3-pil:amd64 (12.3.0-1+b1) ... Setting up python3-decorator (5.3.1-1) ... Setting up python3-jinja2 (3.1.6-4) ... Setting up python3-pygments (2.20.0+dfsg-2) ... Setting up python3-xopen (1.7.0-4) ... Setting up python3-packaging (26.2-3) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-pyparsing (3.3.3-2) ... Setting up python3-humanfriendly (10.0-7) ... /usr/lib/python3/dist-packages/humanfriendly/testing.py:546: SyntaxWarning: 'return' in a 'finally' block return super(MockedProgram, self).__exit__(*args, **kw) Setting up python3-certifi (2026.7.22+ds-1) ... Setting up python3-pil.imagetk:amd64 (12.3.0-1+b1) ... Setting up python3-snowballstemmer (3.1.1-1) ... Setting up python3-brotli (1.2.0-4+b1) ... Setting up python3-mdurl (0.1.2-2) ... Setting up python3-cycler (0.12.1-3) ... Setting up r-base-core (4.6.1-9) ... Creating config file /etc/R/Renviron with new version Setting up python3-dpath (2.2.0-2) ... Setting up python3-connection-pool (0.0.3-2) ... Setting up r-cran-crayon (1.5.3-2) ... Setting up r-cran-squarem (2026.1-1) ... Setting up python3-kiwisolver (1.5.1-1) ... Setting up r-cran-otel (0.2.0-1) ... Setting up python3-idna (3.20-1) ... Setting up r-cran-labeling (0.4.3-2) ... Setting up python3-wrapt (2.3.0-1) ... Setting up python3-markdown (3.10.3-1) ... Setting up python3-throttler (1.2.3-1) ... Setting up coinor-libcbc3.1:amd64 (2.10.13+ds-1) ... Setting up r-cran-sourcetools (0.1.7-2-2) ... Setting up r-cran-futile.options (1.0.1-4) ... Setting up python3-uharfbuzz (0.53.3-1+b1) ... Setting up python3-retry (0.9.2-5) ... Setting up git (1:2.55.0-1) ... Setting up r-cran-lattice (0.23-1-1) ... Setting up python3-numpy (1:2.4.6+ds-5) ... Setting up r-cran-nlme (3.1.171-1) ... Setting up python3-colormath (3.0.0-4) ... /usr/lib/python3/dist-packages/colormath/chromatic_adaptation.py:85: SyntaxWarning: "\*" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\*"? A raw string is also an option. logger.debug(" \* Applying adaptation matrix: %s", adaptation) /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:692: SyntaxWarning: "\s" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\s"? A raw string is also an option. :param sigma: Relative luminance parameter :math:`\sigma`. For average surround set :math:`\sigma=1/2.3`, /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:798: SyntaxWarning: "\s" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\s"? A raw string is also an option. :param sigma: :math:`\sigma` /usr/lib/python3/dist-packages/colormath/color_conversions.py:40: SyntaxWarning: "\*" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\*"? A raw string is also an option. logger.debug(" \* Applying RGB conversion matrix: %s->%s", /usr/lib/python3/dist-packages/colormath/color_conversions.py:488: SyntaxWarning: "\-" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\-"? A raw string is also an option. logger.debug(" \- Target RGB space: %s", target_rgb) /usr/lib/python3/dist-packages/colormath/color_conversions.py:490: SyntaxWarning: "\-" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\-"? A raw string is also an option. logger.debug(" \- Target native illuminant: %s", target_illum) /usr/lib/python3/dist-packages/colormath/color_conversions.py:491: SyntaxWarning: "\-" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\-"? A raw string is also an option. logger.debug(" \- XYZ color's illuminant: %s", cobj.illuminant) /usr/lib/python3/dist-packages/colormath/color_conversions.py:497: SyntaxWarning: "\*" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\*"? A raw string is also an option. logger.debug(" \* Applying transformation from %s to %s ", /usr/lib/python3/dist-packages/colormath/color_conversions.py:503: SyntaxWarning: "\*" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\*"? A raw string is also an option. logger.debug(" \* New values: %.3f, %.3f, %.3f", /usr/lib/python3/dist-packages/colormath/color_objects.py:452: SyntaxWarning: "\-" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\-"? A raw string is also an option. logger.debug(" \- Original illuminant: %s", self.illuminant) /usr/lib/python3/dist-packages/colormath/color_objects.py:453: SyntaxWarning: "\-" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\-"? A raw string is also an option. logger.debug(" \- Target illuminant: %s", target_illuminant) /usr/lib/python3/dist-packages/colormath/color_objects.py:459: SyntaxWarning: "\*" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\*"? A raw string is also an option. logger.debug(" \* Applying transformation from %s to %s ", Setting up r-cran-farver (2.1.2-3) ... Setting up python3-urllib3 (2.8.0-2) ... Setting up r-cran-formatr (1.14-3) ... Setting up r-cran-formula (1.2-6-1) ... Setting up python3-rpds-py (0.30.0-2+b1) ... Setting up python3-fastjsonschema (2.22.1-1) ... Setting up r-cran-xml (3.99-0.25-1) ... Setting up g++-16 (16.2.0-3) ... Setting up hisat2 (2.2.1-5+b4) ... Setting up r-cran-viridislite (0.4.3-1) ... Setting up r-cran-locfit (1.5-9.12-2) ... Setting up python3-stopit (1.1.2-4) ... Setting up python3-lxml:amd64 (6.1.3-1) ... Setting up cpp (4:16.1.0-3) ... Setting up python3-traitlets (5.16.1-1) ... Setting up r-cran-sparsem (1.84-2-1+b1) ... Setting up r-cran-statmod (1.5.2-1) ... Setting up python3-linkify-it (2.2.0-1) ... Setting up g++-x86-64-linux-gnu (4:16.1.0-3) ... Setting up libhts3t64:amd64 (1.24-3) ... Setting up python3-roman-numerals (4.1.0-1) ... Setting up r-cran-nnet (7.3-21-1) ... Setting up ncbi-vdb-data (3.4.1+dfsg-1) ... Setting up python3-dateutil (2.9.0-5) ... Setting up python3-contourpy (1.3.3-2+b1) ... Setting up libbigwig0t64:amd64 (0.4.8+dfsg-3+b1) ... Setting up python3-py2bit (0.3.3-1+b3) ... Setting up python3-datrie (0.8.3-2+b2) ... Setting up r-cran-polynom (1.4-1+dfsg-2) ... Setting up r-cran-commonmark (2.0.0-3) ... Setting up r-cran-rjson (0.2.23-1+b1) ... Setting up r-cran-proxy (0.4-29-1) ... Setting up r-cran-r6 (2.6.1-2) ... Setting up r-cran-pkgkitten (0.2.4-1) ... Setting up python3-mpmath (1.4.1-4) ... Setting up python3-lzstring (1.0.4-3) ... Setting up python3-humanize (4.16.0-1) ... Setting up r-cran-numderiv (2016.8-1.1-3) ... Setting up python3-coloredlogs (15.0.1-2) ... Setting up python3-smmap (6.0.0-2) ... Setting up r-cran-magrittr (2.0.5-1) ... Setting up r-cran-rappdirs (0.3.4-2) ... Setting up python3-jupyter-core (5.9.1-1) ... Setting up r-cran-microbenchmark (1.5.0-1) ... Setting up python3-dnaio (1.2.4-1+b2) ... Setting up python3-imagesize (2.0.1-1) ... Setting up r-cran-littler (0.3.23-1) ... Setting up python3-toposort (1.10-2) ... Setting up python3-configargparse (1.7-4) ... Setting up python3-sympy (1.14.0-6) ... Setting up r-cran-fs (2.1.0+dfsg-1) ... Setting up r-cran-rcpp (1.1.2-1) ... Setting up python3-attr (26.1.0-1) ... Setting up r-cran-curl (8.0.0+dfsg-1) ... Setting up r-cran-codetools (0.2-20-1) ... Setting up r-cran-nloptr (2.2.1-2+b1) ... Setting up r-cran-boot (1.3-32-1) ... Setting up r-cran-rlang (1.3.0-1) ... Setting up libglx-mesa0:amd64 (26.2.5-1) ... Setting up r-cran-matrixstats (1.5.0-3) ... Setting up python3-pysam (0.24.1+ds-2) ... Setting up python3-scipy (1.17.1-5+b1) ... Setting up r-cran-listenv (1.1.0+dfsg-1) ... Setting up python3-smart-open (7.5.1-2) ... Setting up libglx0:amd64 (1.7.0-3+b1) ... Setting up dconf-gsettings-backend:amd64 (51.0-2) ... Setting up python3-spectra (0.1.0-2) ... Setting up r-cran-xfun (0.61+dfsg-1) ... Setting up python3-babel (2.18.0+git2026-08-12-3) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up r-cran-urca (1.3-4-1) ... Setting up r-cran-sys (3.4.3-3) ... Setting up python3-deeptoolsintervals (0.1.9-3+b13) ... Setting up python3-lz4 (4.4.5+dfsg-1+b1) ... Setting up r-cran-withr (3.0.3+dfsg-1) ... Setting up r-cran-backports (1.5.1-2) ... Setting up r-cran-deriv (4.3.5-1) ... Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-charset-normalizer (3.4.7-2+b1) ... Setting up r-cran-mime (0.13-2) ... Setting up python3-alabaster (1.0.0-2) ... Setting up r-cran-generics (0.1.4-1) ... Setting up r-cran-base64enc (0.1-6-2) ... Setting up r-cran-iterators (1.0.14-1) ... Setting up r-cran-abind (1.4-8-1) ... Setting up r-cran-digest (0.6.39-1) ... Setting up r-cran-yaml (2.3.12-2) ... Setting up python3-tenacity (9.1.4-2) ... Setting up r-cran-lambda.r (1.2.4-3) ... Setting up r-cran-gower (1.0.2-2) ... Setting up r-cran-evaluate (1.0.5-3) ... Setting up r-cran-timedate (4052.112-2) ... Setting up r-cran-highr (0.12+dfsg-1) ... Setting up r-cran-foreach (1.5.2-1) ... Setting up libncbi-vdb3:amd64 (3.4.1+dfsg-1) ... Setting up r-cran-cardata (3.0.6-1) ... Setting up libstaden-read14t64:amd64 (1.15.1-1) ... Setting up r-cran-mass (7.3-66-1) ... Setting up r-cran-proc (1.19.1-1) ... Setting up python3-tabulate (0.10.0-1) ... Setting up python3-yaml (6.0.3-1+b1) ... Setting up python3-pytz (2026.5-1) ... Setting up r-cran-snow (1:0.4.4-2) ... Setting up python3-gitdb (4.0.12-2) ... Setting up r-cran-data.table (1.18.6.1+dfsg-1) ... Setting up r-cran-glue (1.8.1-2) ... Setting up r-cran-fracdiff (1.5-4-1) ... Setting up r-cran-xtable (1:1.8-8-1) ... Setting up r-cran-cli (3.6.6-1) ... Setting up r-cran-rbibutils (2.4.1-3) ... Setting up r-cran-lifecycle (1.0.5+dfsg-1) ... Setting up r-cran-bitops (1.1-0-1) ... Setting up gcc (4:16.1.0-3) ... Setting up r-cran-progressr (1.0.0-1) ... Setting up samtools (1.24-2) ... Setting up r-cran-shape (1.4.6.1-2) ... Setting up python3-yte (1.5.4-1) ... Setting up r-cran-askpass (1.2.1-3) ... Setting up r-cran-fastmap (1.2.0-3) ... Setting up salmon (1.10.3+ds1-3+b2) ... Setting up r-cran-jsonlite (2.0.0+dfsg-2) ... Setting up r-cran-corrplot (0.95-2) ... Setting up r-cran-pkgconfig (2.0.3-3) ... Setting up python3-pyaml-env (1.2.1-2) ... /usr/lib/python3/dist-packages/pyaml_env/parse_config.py:58: SyntaxWarning: "\w" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\w"? A raw string is also an option. type_tag_pattern = re.compile(f'({type_tag}\w+\s)') Setting up r-cran-utf8 (1.2.6-2) ... Setting up r-cran-colorspace (2.1-4+dfsg-1) ... Setting up r-cran-parallelly (1.47.0-1) ... Setting up libgl1:amd64 (1.7.0-3+b1) ... Setting up coinor-cbc (2.10.13+ds-1) ... Setting up r-cran-stringi (1.8.9-1) ... Setting up python3-cutadapt (4.7-2+b5) ... Setting up r-cran-s7 (0.2.2-1) ... Setting up r-cran-cpp11 (0.5.5-1) ... Setting up r-cran-plyr (1.8.9-2) ... Setting up r-cran-rcolorbrewer (1.1-3-2) ... Setting up r-cran-isoband (0.3.0-1) ... Setting up python3-git (3.2.1-1) ... Setting up r-cran-futile.logger (1.4.9-2) ... Setting up r-cran-diagram (1.6.5-3) ... Setting up python3-requests (2.34.2-1) ... Setting up r-cran-scales (1.4.0-1) ... Setting up megadepth (1.2.0-5+b1) ... Setting up r-cran-gtable (0.3.6+dfsg-2) ... Setting up r-cran-zoo (1.9-1-1) ... Setting up r-cran-later (1.4.8+dfsg-3) ... Setting up r-cran-matrix (1.7-6-1) ... Setting up r-cran-htmltools (0.5.9-2) ... Setting up python3-pybigwig (0.3.25+dfsg-1+b1) ... Setting up r-cran-tinytex (0.61-1) ... Setting up python3-markdown-it (4.2.0-4) ... Setting up r-cran-kernsmooth (2.23-27-1) ... Setting up r-cran-knitr (1.51+dfsg-2) ... Setting up r-cran-mgcv (1.9-4-1) ... Setting up g++ (4:16.1.0-3) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up r-cran-cachem (1.1.0-3) ... Setting up r-cran-lmtest (0.9.40-1) ... Setting up build-essential (12.12) ... Setting up r-cran-rcpparmadillo (15.6.2-1-1) ... Setting up r-cran-lazyeval (0.2.3-1) ... Setting up r-cran-tzdb (0.5.0-1) ... Setting up r-cran-globals (0.19.1-2) ... Setting up r-cran-rcurl (1.98-1.20+dfsg-1) ... Setting up python3-htseq (2.0.9+dfsg-1+b4) ... Setting up r-cran-vctrs (0.7.3-2) ... Setting up libgtk-3-common (3.24.52-3) ... Setting up r-cran-rcppeigen (0.3.4.0.2-1) ... Setting up python3-referencing (0.37.0+~2025.1.1-3) ... Setting up r-cran-pillar (1.11.1+dfsg-1) ... Setting up libncbi-ngs3:amd64 (3.4.1+dfsg-2) ... Setting up gsettings-desktop-schemas (51.0-2) ... Setting up r-cran-pheatmap (1.0.13-1) ... Setting up r-cran-minqa (1.2.8-1) ... Setting up r-cran-openssl (2.4.2+dfsg-1) ... Setting up libngs-jni:amd64 (3.4.1+dfsg-2) ... Setting up r-bioc-biocgenerics (0.58.1-2) ... Setting up r-cran-stringr (1.6.0-1) ... Setting up r-cran-class (7.3-24-1) ... Setting up r-cran-modelmetrics (1.2.2.2-2) ... Setting up r-bioc-matrixgenerics (1.24.0-1) ... Setting up python3-rich (15.0.0-2) ... Setting up python3-pulp (2.7.0+dfsg-5) ... Setting up r-cran-matrixmodels (0.5-4-2) ... Setting up r-cran-ggplot2 (4.0.3+dfsg-1) ... Setting up r-cran-ggsignif (0.6.4-2) ... Setting up cutadapt (4.7-2) ... Setting up r-bioc-rhtslib (3.8.0+dfsg-1) ... Setting up r-cran-sparsevctrs (0.3.6-2) ... Setting up r-cran-tibble (3.3.1+dfsg-2) ... Setting up r-cran-clock (0.7.4-2) ... Setting up r-cran-fontawesome (0.5.3-2) ... Setting up r-cran-survival (3.8-12-1) ... Setting up r-cran-ggsci (5.2.0-1) ... Setting up r-cran-rdpack (2.6.6-1) ... Setting up r-cran-future (1.75.0+dfsg-1) ... Setting up r-cran-jquerylib (0.1.4+dfsg-6) ... Setting up r-cran-tidyselect (1.2.1+dfsg-3) ... Setting up r-cran-reshape2 (1.4.5-1) ... Setting up r-bioc-biobase (2.72.0-1) ... Setting up r-cran-future.apply (1.20.2+dfsg-1) ... Setting up r-cran-timechange (0.4.0-1) ... Setting up r-cran-httr (1.4.9+dfsg-1) ... Setting up r-bioc-s4vectors (0.50.3+dfsg-1) ... Setting up r-cran-gridextra (2.3.1-1) ... Setting up r-cran-memoise (2.0.1-2) ... Setting up r-cran-lava (1.9.3+dfsg-1) ... Setting up r-cran-promises (1.5.0+dfsg-3) ... Setting up r-cran-purrr (1.2.2-1) ... Setting up r-cran-e1071 (1.7-17-1) ... Setting up r-cran-ggrepel (0.9.8-1) ... Setting up r-bioc-tximport (1.40.0+dfsg-1) ... Setting up python3-rich-click (1.9.9-1) ... Setting up r-cran-hardhat (1.4.3+dfsg-1) ... Setting up r-cran-sass (0.4.10+dfsg-3) ... Setting up r-cran-dplyr (1.2.1-2) ... Setting up r-bioc-iranges (2.46.0-1) ... Setting up r-cran-forecast (9.0.2-2) ... Setting up r-cran-reformulas (0.4.4-1) ... Setting up libngs-java:amd64 (3.4.1+dfsg-2) ... Setting up python3-jsonschema-specifications (2025.9.1-1) ... Setting up r-cran-restfulr (0.0.17-1) ... Setting up r-cran-cowplot (1.2.0+dfsg-1) ... Setting up r-cran-lubridate (1.9.5+dfsg-2) ... Setting up r-cran-prodlim (2026.03.11-1) ... Setting up r-bioc-s4arrays (1.12.1+dfsg-1) ... Setting up r-bioc-ucsc.utils (1.8.0+dfsg-1) ... Setting up trim-galore (0.6.10-1) ... Setting up r-cran-httpuv (1.6.17+dfsg-1) ... Setting up r-cran-rpart (4.1.27-1) ... Setting up r-bioc-biocio (1.22.0+dfsg-1) ... Setting up r-bioc-seqinfo (1.2.0+dfsg-1) ... Setting up r-cran-ipred (0.9-16-1) ... Setting up r-cran-lme4 (2.0-6-1) ... Setting up r-bioc-genomeinfodb (1.48.0+dfsg-1) ... Setting up r-cran-bslib (0.10.0+dfsg-1) ... Setting up python3-jsonschema (4.26.0-3) ... Setting up r-cran-tidyr (1.3.2-3) ... Setting up r-cran-recipes (1.3.3+dfsg-2) ... Setting up r-bioc-xvector (0.52.0-1) ... Setting up r-bioc-sparsearray (1.12.3+dfsg-1) ... Setting up r-bioc-genomicranges (1.64.0+dfsg-1) ... Setting up r-bioc-biostrings (2.80.2+dfsg-1) ... Setting up r-cran-caret (7.0-1+dfsg-2) ... Setting up r-cran-shiny (1.13.0+dfsg-1) ... Setting up python3-nbformat (5.10.4-3) ... Setting up r-cran-shinyjs (2.1.1-1) ... Setting up r-cran-miniui (0.1.2-1) ... Setting up r-cran-broom (1.0.13+dfsg-2) ... Setting up r-cran-rmarkdown (2.31+dfsg-1) ... Setting up r-cran-conquer (1.3.3-1) ... Setting up python3-plotly (5.20.0+dfsg-1.1) ... Setting up r-bioc-cigarillo (1.2.1+dfsg-1) ... Setting up r-cran-crosstalk (1.2.2+dfsg-1) ... Setting up r-bioc-delayedarray (0.38.2+dfsg-1) ... Setting up r-bioc-summarizedexperiment (1.42.0+dfsg-1) ... Setting up r-cran-quantreg (6.1-1) ... Setting up r-cran-modelr (0.1.11-3) ... Setting up r-cran-htmlwidgets (1.6.4+dfsg-2) ... Setting up r-cran-colourpicker (1.3.0+dfsg-2) ... Setting up r-cran-doby (4.7.2-2) ... Setting up r-cran-dt (0.34.0+dfsg-1) ... Setting up r-cran-plotly (4.12.1+dfsg-1) ... Setting up r-cran-pbkrtest (0.5.5-2) ... Setting up r-cran-car (3.1-5-1) ... Setting up r-cran-gprofiler2 (0.2.4+dfsg-1) ... Setting up r-cran-rstatix (1.1.0-1) ... Setting up r-cran-ggpubr (1.0.0-1) ... Setting up libheif-plugin-dav1d:amd64 (1.23.6-2) ... Setting up libheif-plugin-libde265:amd64 (1.23.6-2) ... Setting up libboost-regex1.92-dev:amd64 (1.92.0-4) ... Setting up libheif1:amd64 (1.23.6-2) ... Setting up python3-fonttools (4.65.0-1) ... Setting up libboost1.92-dev:amd64 (1.92.0-4) ... Setting up librsvg2-2:amd64 (2.63.2+dfsg-1) ... Setting up glycin-thumbnailers (2.2.3+ds-1) ... Setting up python3-ufolib2 (0.18.1+dfsg1-2) ... Setting up libboost-dev:amd64 (1.92.0.1) ... Setting up glycin-loaders (2.2.3+ds-1) ... Setting up libglycin-2-0:amd64 (2.2.3+ds-1) ... Setting up r-cran-bh (1.90.0-1) ... Setting up python3-matplotlib (3.10.9+dfsg1-2) ... Setting up r-bioc-biocparallel (1.46.0-1) ... Setting up r-bioc-deseq2 (1.52.0+dfsg-1) ... Setting up r-bioc-rsamtools (2.28.0+dfsg-1+b1) ... Setting up libgdk-pixbuf-2.0-0:amd64 (2.44.8+dfsg-1) ... Setting up r-bioc-genomicalignments (1.48.0+dfsg-1) ... Setting up r-bioc-rtracklayer (1.72.0+ds-1+b1) ... Setting up multiqc (1.21+dfsg-4) ... /usr/lib/python3/dist-packages/multiqc/modules/flash/flash.py:200: SyntaxWarning: 'return' in a 'finally' block return nameddata Setting up gtk-update-icon-cache (4.24.1+ds-1) ... Setting up adwaita-icon-theme (51.0-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libgtk-3-0t64:amd64 (3.24.52-3) ... Processing triggers for libc-bin (2.43-7) ... Processing triggers for systemd (262.1-1) ... Processing triggers for ca-certificates-java (20260311) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_BR_Root_CA_2_2023.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_2_2023.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_Server_Root_ECC_G1.pem Adding debian:OISTE_Server_Root_RSA_G1.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SECOM_TLS_ECC_Root_CA_2024.pem Adding debian:SECOM_TLS_RSA_Root_CA_2024.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_Root_CA14.pem Adding debian:SecureSign_Root_CA15.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_RSA_TLS_Root_CA_2022_-_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_CYBER_Root_CA.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem Adding debian:Telia_EC_TLS_Root_CA_v3.pem Adding debian:Telia_RSA_TLS_Root_CA_v3.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:TrustAsia_TLS_ECC_Root_CA.pem Adding debian:TrustAsia_TLS_RSA_Root_CA.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:e-Szigno_TLS_Root_CA_2023.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up openjdk-25-jre:amd64 (25.0.5~7ea-2) ... Setting up default-jre-headless (2:1.25-77) ... Setting up default-jre (2:1.25-77) ... Setting up junit4 (4.13.2-6) ... Setting up libjson-java (3.2.0+dfsg-2) ... Setting up libhtsjdk-java (5.0.0+dfsg-2) ... Setting up fastqc (0.12.1+dfsg-4) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up docutils-common (0.23+dfsg-2) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up python3-docutils (0.23+dfsg-2) ... Setting up snakemake (7.32.4-12) ... Setting up python3-sphinx (9.1.0-9) ... Setting up python3-numpydoc (1.9.0-2) ... Setting up python3-deeptools (3.5.6+dfsg-1) ... Setting up pigx-rnaseq (0.1.1-4) ... Processing triggers for ca-certificates (20260816) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20260311) ... done. 6m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'apt-get', '-y', 'install', 'pigx-rnaseq=0.1.1-4'] 6m8.0s INFO: Running scripts post_install 6m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/post_install_exceptions'] 6m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/post_install_exceptions'] 6m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/post_install_log_alternatives'] 6m8.1s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=python3: piuparts=pigx-rnaseq=0.1.1-4: /usr/bin/update-alternatives --auto /usr/bin/python3 LOG-ALTERNATIVES: dpkg=libblas3: piuparts=pigx-rnaseq=0.1.1-4: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so.3 libblas.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 10 LOG-ALTERNATIVES: dpkg=xz-utils: piuparts=pigx-rnaseq=0.1.1-4: /usr/bin/update-alternatives --install /usr/bin/lzma lzma /usr/bin/xz 20 --slave /usr/share/man/man1/lzma.1.gz lzma.1.gz /usr/share/man/man1/xz.1.gz --slave /usr/bin/unlzma unlzma /usr/bin/unxz --slave /usr/share/man/man1/unlzma.1.gz unlzma.1.gz /usr/share/man/man1/unxz.1.gz --slave /usr/bin/lzcat lzcat /usr/bin/xzcat --slave /usr/share/man/man1/lzcat.1.gz lzcat.1.gz /usr/share/man/man1/xzcat.1.gz --slave /usr/bin/lzmore lzmore /usr/bin/xzmore --slave /usr/share/man/man1/lzmore.1.gz lzmore.1.gz /usr/share/man/man1/xzmore.1.gz --slave /usr/bin/lzless lzless /usr/bin/xzless --slave /usr/share/man/man1/lzless.1.gz lzless.1.gz /usr/share/man/man1/xzless.1.gz --slave /usr/bin/lzdiff lzdiff /usr/bin/xzdiff --slave /usr/share/man/man1/lzdiff.1.gz lzdiff.1.gz /usr/share/man/man1/xzdiff.1.gz --slave /usr/bin/lzcmp lzcmp /usr/bin/xzcmp --slave /usr/share/man/man1/lzcmp.1.gz lzcmp.1.gz /usr/share/man/man1/xzcmp.1.gz --slave /usr/bin/lzgrep lzgrep /usr/bin/xzgrep --slave /usr/share/man/man1/lzgrep.1.gz lzgrep.1.gz /usr/share/man/man1/xzgrep.1.gz --slave /usr/bin/lzegrep lzegrep /usr/bin/xzegrep --slave /usr/share/man/man1/lzegrep.1.gz lzegrep.1.gz /usr/share/man/man1/xzegrep.1.gz --slave /usr/bin/lzfgrep lzfgrep /usr/bin/xzfgrep --slave /usr/share/man/man1/lzfgrep.1.gz lzfgrep.1.gz /usr/share/man/man1/xzfgrep.1.gz LOG-ALTERNATIVES: dpkg=xdg-utils: piuparts=pigx-rnaseq=0.1.1-4: /usr/bin/update-alternatives --install /usr/bin/open open /usr/bin/xdg-open 50 --slave /usr/share/man/man1/open.1.gz open.1.gz /usr/share/man/man1/xdg-open.1.gz LOG-ALTERNATIVES: dpkg=liblapack3: piuparts=pigx-rnaseq=0.1.1-4: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so.3 liblapack.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 10 LOG-ALTERNATIVES: dpkg=perl: piuparts=pigx-rnaseq=0.1.1-4: /usr/bin/update-alternatives --remove rename /usr/bin/prename LOG-ALTERNATIVES: dpkg=openjdk-25-jre-headless: piuparts=pigx-rnaseq=0.1.1-4: /usr/bin/update-alternatives --install /usr/bin/java java /usr/lib/jvm/java-25-openjdk-amd64/bin/java 2511 --slave /usr/share/man/man1/java.1.gz java.1.gz /usr/lib/jvm/java-25-openjdk-amd64/man/man1/java.1.gz LOG-ALTERNATIVES: dpkg=openjdk-25-jre-headless: piuparts=pigx-rnaseq=0.1.1-4: /usr/bin/update-alternatives --install /usr/bin/jpackage jpackage /usr/lib/jvm/java-25-openjdk-amd64/bin/jpackage 2511 --slave /usr/share/man/man1/jpackage.1.gz jpackage.1.gz /usr/lib/jvm/java-25-openjdk-amd64/man/man1/jpackage.1.gz LOG-ALTERNATIVES: dpkg=openjdk-25-jre-headless: piuparts=pigx-rnaseq=0.1.1-4: /usr/bin/update-alternatives --install /usr/bin/keytool keytool /usr/lib/jvm/java-25-openjdk-amd64/bin/keytool 2511 --slave /usr/share/man/man1/keytool.1.gz keytool.1.gz /usr/lib/jvm/java-25-openjdk-amd64/man/man1/keytool.1.gz LOG-ALTERNATIVES: dpkg=openjdk-25-jre-headless: piuparts=pigx-rnaseq=0.1.1-4: /usr/bin/update-alternatives --install /usr/bin/rmiregistry rmiregistry /usr/lib/jvm/java-25-openjdk-amd64/bin/rmiregistry 2511 --slave /usr/share/man/man1/rmiregistry.1.gz rmiregistry.1.gz /usr/lib/jvm/java-25-openjdk-amd64/man/man1/rmiregistry.1.gz LOG-ALTERNATIVES: dpkg=openjdk-25-jre-headless: piuparts=pigx-rnaseq=0.1.1-4: /usr/bin/update-alternatives --install /usr/bin/jexec jexec /usr/lib/jvm/java-25-openjdk-amd64/lib/jexec 2511 --slave /usr/share/binfmts/jar jexec-binfmt /usr/lib/jvm/java-25-openjdk-amd64/lib/jar.binfmt LOG-ALTERNATIVES: dpkg=cpp: piuparts=pigx-rnaseq=0.1.1-4: /usr/bin/update-alternatives --quiet --install /lib/cpp cpp /usr/bin/cpp 10 LOG-ALTERNATIVES: dpkg=python3-babel: piuparts=pigx-rnaseq=0.1.1-4: /usr/bin/update-alternatives --install /usr/bin/pybabel pybabel /usr/bin/pybabel-python3 200 LOG-ALTERNATIVES: dpkg=gcc: piuparts=pigx-rnaseq=0.1.1-4: /usr/bin/update-alternatives --quiet --install /usr/bin/cc cc /usr/bin/gcc 20 LOG-ALTERNATIVES: dpkg=gcc: piuparts=pigx-rnaseq=0.1.1-4: /usr/bin/update-alternatives --quiet --install /usr/bin/c89 c89 /usr/bin/c89-gcc 20 --slave /usr/share/man/man1/c89.1.gz c89.1.gz /usr/share/man/man1/c89-gcc.1.gz LOG-ALTERNATIVES: dpkg=gcc: piuparts=pigx-rnaseq=0.1.1-4: /usr/bin/update-alternatives --quiet --install /usr/bin/c99 c99 /usr/bin/c99-gcc 20 --slave /usr/share/man/man1/c99.1.gz c99.1.gz /usr/share/man/man1/c99-gcc.1.gz LOG-ALTERNATIVES: dpkg=g++: piuparts=pigx-rnaseq=0.1.1-4: /usr/bin/update-alternatives --install /usr/bin/c++ c++ /usr/bin/g++ 20 LOG-ALTERNATIVES: dpkg=adwaita-icon-theme: piuparts=pigx-rnaseq=0.1.1-4: /usr/bin/update-alternatives --install /usr/share/icons/default/index.theme x-cursor-theme /usr/share/icons/Adwaita/cursor.theme 90 6m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/post_install_log_alternatives'] 6m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'systemd-tmpfiles', '--cat-config'] 6m8.1s DUMP: # /usr/lib/tmpfiles.d/20-systemd-osc-context.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. L$ /etc/profile.d/80-systemd-osc-context.sh - - - - /usr/lib/systemd/profile.d/80-systemd-osc-context.sh # /usr/lib/tmpfiles.d/20-systemd-shell-extra.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. L$ /etc/profile.d/70-systemd-shell-extra.sh - - - - /usr/lib/systemd/profile.d/70-systemd-shell-extra.sh # /usr/lib/tmpfiles.d/20-systemd-ssh-generator.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. L$ /etc/ssh/ssh_config.d/20-systemd-ssh-proxy.conf - - - - /usr/lib/systemd/ssh_config.d/20-systemd-ssh-proxy.conf d /run/sshd 0755 # /usr/lib/tmpfiles.d/20-systemd-stub.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. # Copy systemd-stub provided metadata such as PCR signature and public key file # from initrd into /run/, so that it will survive the initrd stage C /run/systemd/stub/profile 0444 root root - /.extra/profile C /run/systemd/stub/os-release 0444 root root - /.extra/os-release C /run/systemd/stub/boot-secret 0400 root root - /.extra/boot-secret C /run/systemd/tpm2-pcr-signature.json 0444 root root - /.extra/tpm2-pcr-signature.json C /run/systemd/tpm2-pcr-public-key.pem 0444 root root - /.extra/tpm2-pcr-public-key.pem # /usr/lib/tmpfiles.d/20-systemd-varlink.conf # SPDX-License-Identifier: LGPL-2.1-or-later # See tmpfiles.d(5) for details. # Varlink AF_UNIX entrypoint socket inodes of relevant system services may be # linked into this directory, to make them "well-known". Typically, tools such # as the Varlink HTTP bridge expose services linked in here as public # interfaces. The symlink should be named after the Varlink interface to # expose. Interfaces that may be implemented by multiple services (such as # the generic "io.systemd.service") should not be symlinked here. d /run/varlink/registry/ 0755 root root # Socket activated services should use Symlinks= in the .socket unit file to # create these symlinks. If that's not applicable, consider creating the # symlinks via a tmpfiles.d/ snippet, like we do here, so that registration can # be influenced by the administrator. L /run/varlink/registry/io.systemd.Unit - - - - ../../systemd/io.systemd.Manager L /run/varlink/registry/io.systemd.Manager - - - - ../../systemd/io.systemd.Manager L /run/varlink/registry/io.systemd.Journal - - - - ../../systemd/journal/io.systemd.journal # /usr/lib/tmpfiles.d/credstore.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. d /etc/credstore 0700 root root d /etc/credstore.encrypted 0700 root root z /run/credstore 0700 root root z /run/credstore.encrypted 0700 root root # /usr/lib/tmpfiles.d/dbus.conf # Fields: type; path; mode; uid; gid; age; argument (symlink target) # Make ${localstatedir}/lib/dbus (required for systemd < 237) # Adjust mode and ownership if it already exists. d /var/lib/dbus 0755 - - - # Make ${localstatedir}/lib/dbus/machine-id a symlink to /etc/machine-id # if it does not already exist L /var/lib/dbus/machine-id - - - - /etc/machine-id # /usr/lib/tmpfiles.d/debian.conf # This file is part of the debianisation of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details # Type Path Mode UID GID Age Argument L /run/shm - - - - /dev/shm d /run/sendsigs.omit.d 0755 root root - d /run/lock 1777 root root - - L+ /etc/mtab - - - - ../proc/self/mounts L+ /etc/default/locale - - - - ../locale.conf L+ /etc/vconsole.conf - - - - default/keyboard C! /etc/nsswitch.conf - - - - C! /etc/pam.d - - - - C! /etc/issue - - - - # /usr/lib/tmpfiles.d/home.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. Q /home 0755 - - - q /srv 0755 - - - # /usr/lib/tmpfiles.d/journal-nocow.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. # Set the NOCOW attribute for directories of journal files. This flag # is inherited by their new files and sub-directories. Matters only # for btrfs filesystems. # # WARNING: Enabling the NOCOW attribute improves journal performance # substantially, but also disables the btrfs checksum logic. In # btrfs RAID filesystems the checksums are needed for rebuilding # corrupted files. Without checksums such rebuilds are not # possible. # # In a single-disk filesystem (or a filesystem without redundancy) # enabling the NOCOW attribute for journal files is safe, because # they have their own checksums and a rebuilding wouldn't be possible # in any case. h /var/log/journal - - - - +C h /var/log/journal/%m - - - - +C h /var/log/journal/remote - - - - +C # /usr/lib/tmpfiles.d/passwd.conf # If a password operation is in progress and we lose power, stale lockfiles # can be left behind. Clear them on boot. r! /etc/gshadow.lock r! /etc/shadow.lock r! /etc/passwd.lock r! /etc/group.lock r! /etc/subuid.lock r! /etc/subgid.lock # /usr/lib/tmpfiles.d/provision.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. # Provision additional login messages from credentials, if they are set. Note # that these lines are NOPs if the credentials are not set or if the files # already exist. f^ /etc/motd.d/50-provision.conf - - - - login.motd f^ /etc/issue.d/50-provision.conf - - - - login.issue # Provision a /etc/hosts file from credentials. f^ /etc/hosts - - - - network.hosts # Provision SSH key for root d- /root :0700 root :root - d- /root/.ssh :0700 root :root - f^ /root/.ssh/authorized_keys :0600 root :root - ssh.authorized_keys.root # /usr/lib/tmpfiles.d/systemd-network.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. d$ /run/systemd/netif 0755 systemd-network systemd-network - d$ /run/systemd/netif/links 0755 systemd-network systemd-network - d$ /run/systemd/netif/leases 0755 systemd-network systemd-network - d$ /var/lib/systemd/network 0755 systemd-network systemd-network - # /usr/lib/tmpfiles.d/systemd-nologin.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5), systemd-user-sessions.service(8) and pam_nologin(8). f+! /run/nologin 0644 - - - "System is booting up. Unprivileged users are not permitted to log in yet. Please come back later. For technical details, see pam_nologin(8)." # /usr/lib/tmpfiles.d/systemd-pstore.conf # SPDX-License-Identifier: LGPL-2.1-or-later # # The systemd-pstore.service(1) archives the contents of /sys/fs/pstore # upon boot so that there is room for a subsequent dump. This service # is enabled with: # systemctl enable systemd-pstore # # With the service enabled, the kernel still needs to be configured # to write data into the pstore. The kernel has two parameters, # crash_kexec_post_notifiers and printk.always_kmsg_dump, that # control writes into pstore. # # The crash_kexec_post_notifiers parameter enables the kernel to write # dmesg (including stack trace) into pstore upon a panic even if kdump # is loaded, only needed if you want to use pstore with kdump. Without # this parameter, kdump could block writing to pstore for stability # reason. Note this increases the risk of kdump failure even if pstore # is not available. # # The printk.always_kmsg_dump parameter enables the kernel to write dmesg # upon a normal shutdown (shutdown, reboot, halt). # # To configure the kernel parameters, uncomment the appropriate # lines below. The value written is either 'Y' to enable the # kernel parameter, or 'N' to disable the kernel parameter. # # After making a change to this file, do: # systemd-tmpfiles --create path/to/tmpfiles.d/systemd-pstore.conf # # These changes are automatically applied on future re-boots. d /var/lib/systemd/pstore 0755 root root 14d #w- /sys/module/printk/parameters/always_kmsg_dump - - - - Y #w- /sys/module/kernel/parameters/crash_kexec_post_notifiers - - - - Y # /usr/lib/tmpfiles.d/systemd-tmp.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. # Exclude namespace mountpoints created with PrivateTmp=yes x /tmp/systemd-private-%b-* X /tmp/systemd-private-%b-*/tmp x /var/tmp/systemd-private-%b-* X /var/tmp/systemd-private-%b-*/tmp # Remove top-level private temporary directories on each boot R! /tmp/systemd-private-* R! /var/tmp/systemd-private-* # Handle lost systemd-coredump temp files. They could be lost on old filesystems, # for example, after hard reboot. x /var/lib/systemd/coredump/.#core*.%b* r! /var/lib/systemd/coredump/.#* # /usr/lib/tmpfiles.d/systemd.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. d /run/user 0755 root root - d /run/systemd/ask-password 0755 root root - d$ /run/systemd/seats 0755 root root - d$ /run/systemd/sessions 0755 root root - d$ /run/systemd/users 0755 root root - d /run/systemd/machines 0755 root root - d$ /run/systemd/shutdown 0755 root root - d /run/systemd/dissect-root 0000 root root - d /run/systemd/report.sign 0700 root root - d /run/log 0755 root root - z /run/log/journal 2755 root systemd-journal - - Z /run/log/journal/%m ~2750 root systemd-journal - - a+ /run/log/journal - - - - d:group::r-x,d:group:adm:r-x,group::r-x,group:adm:r-x A+ /run/log/journal/%m - - - - d:group:adm:r-x,group:adm:r-X z /var/log/journal 2755 root systemd-journal - - z /var/log/journal/%m 2755 root systemd-journal - - z /var/log/journal/%m/system.journal 0640 root systemd-journal - - a+ /var/log/journal - - - - d:group::r-x,d:group:adm:r-x,group::r-x,group:adm:r-x a+ /var/log/journal/%m - - - - d:group:adm:r-x,group:adm:r-x a+ /var/log/journal/%m/system.journal - - - - group:adm:r-- d /var/lib/systemd 0755 root root - d /var/lib/systemd/coredump 0755 root root 2w # Files and directories in /var/lib/systemd/ephemeral-trees are locked by pid 1 to prevent tmpfiles from # removing them, and tmpfiles is told to clean up anything in /var/lib/systemd/ephemeral-trees that isn't # locked unconditionally. d /var/lib/systemd/ephemeral-trees 0755 root root 0 d /var/lib/private 0700 root root - d /var/log/private 0700 root root - d /var/cache/private 0700 root root - # /usr/lib/tmpfiles.d/tmp.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. # Clear tmp directories separately, to make them easier to override q /tmp 1777 root root 10d q /var/tmp 1777 root root 30d # /usr/lib/tmpfiles.d/var.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. q /var 0755 - - - L /var/run - - - - ../run d /var/log 0755 - - - d /var/cache 0755 - - - d /var/lib 0755 - - - d /var/spool 0755 - - - # /usr/lib/tmpfiles.d/x11.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. # Make sure these are created by default so that nobody else can # or empty them at startup D /tmp/.X11-unix 1777 root root 1h D /tmp/.ICE-unix 1777 root root 1h D /tmp/.XIM-unix 1777 root root 1h D /tmp/.font-unix 1777 root root 1h # Unlink the X11 lock files at boot, but exclude them from time-based cleanup later r! /tmp/.X[0-9]*-lock x /tmp/.X[0-9]*-lock 6m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'systemd-tmpfiles', '--cat-config'] 6m8.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy'] 6m14.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy'] 6m14.9s INFO: IGNORED broken symlink: /etc/vconsole.conf (flag L+ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 6m14.9s INFO: IGNORED broken symlink: /etc/default/locale (flag L+ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 6m24.0s INFO: IGNORED broken symlink: /run/varlink/registry/io.systemd.Journal (flag L systemd-tmpfiles snippet /usr/lib/tmpfiles.d/20-systemd-varlink.conf) 6m24.0s INFO: IGNORED broken symlink: /run/varlink/registry/io.systemd.Manager (flag L systemd-tmpfiles snippet /usr/lib/tmpfiles.d/20-systemd-varlink.conf) 6m24.0s INFO: IGNORED broken symlink: /run/varlink/registry/io.systemd.Unit (flag L systemd-tmpfiles snippet /usr/lib/tmpfiles.d/20-systemd-varlink.conf) 6m24.0s ERROR: WARN: Broken symlinks: /usr/lib/jvm/java-25-openjdk-amd64/lib/libatk-wrapper.so -> ../../../x86_64-linux-gnu/jni/libatk-wrapper.so (openjdk-25-jre:amd64) 6m29.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', '-ac', '--ignore-obsolete'] 6m43.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', '-ac', '--ignore-obsolete'] 6m43.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 6m43.9s DUMP: 0.17.5+b5 6m43.9s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 6m43.9s INFO: Running adequate version 0.17.5+b5 now. 6m43.9s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'pigx-rnaseq'] 6m44.0s DUMP: pigx-rnaseq: py-file-not-bytecompiled /usr/libexec/pigx_rnaseq/scripts/validate_input.py pigx-rnaseq: py-file-not-bytecompiled /usr/libexec/pigx_rnaseq/snakefile.py 6m44.0s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'pigx-rnaseq'] 6m44.0s ERROR: WARN: Inadequate results from running adequate! pigx-rnaseq: py-file-not-bytecompiled /usr/libexec/pigx_rnaseq/scripts/validate_input.py pigx-rnaseq: py-file-not-bytecompiled /usr/libexec/pigx_rnaseq/snakefile.py 6m44.0s ERROR: WARN: Running adequate resulted in inadequate tags found: py-file-not-bytecompiled 6m44.0s INFO: Running scripts pre_remove 6m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 6m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 6m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 6m44.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 6m44.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 7m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 7m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 7m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 7m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 7m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 7m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_remove_exceptions'] 7m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/pre_remove_exceptions'] 7m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 7m14.2s DUMP: install ok installed adwaita-icon-theme adwaita-icon-theme 51.0-1 install ok installed apt apt 3.3.3 install ok installed at-spi2-common at-spi2-common 2.62.1-1 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed binutils binutils 2.47-6 install ok installed binutils-common:amd64 binutils-common 2.47-6 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.47-6 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed bubblewrap bubblewrap 0.13.1-1 install ok installed build-essential build-essential 12.12 install ok installed bzip2 bzip2 1.0.8-6+b2 install ok installed ca-certificates ca-certificates 20260816 install ok installed ca-certificates-java ca-certificates-java 20260311 install ok installed coinor-cbc coinor-cbc 2.10.13+ds-1 install ok installed coinor-libcbc3.1:amd64 coinor-libcbc3.1 2.10.13+ds-1 install ok installed coinor-libcgl1:amd64 coinor-libcgl1 0.60.10+ds-1 install ok installed coinor-libclp1:amd64 coinor-libclp1 1.17.10+ds-1+b2 install ok installed coinor-libcoinutils3v5:amd64 coinor-libcoinutils3v5 2.11.12+ds-1+b2 install ok installed coinor-libosi1v5:amd64 coinor-libosi1v5 0.108.11+ds-1+b2 install ok installed coreutils coreutils 9.10-1 install ok installed cpp cpp 4:16.1.0-3 install ok installed cpp-16 cpp-16 16.2.0-3 install ok installed cpp-16-x86-64-linux-gnu cpp-16-x86-64-linux-gnu 16.2.0-3 install ok installed cpp-x86-64-linux-gnu cpp-x86-64-linux-gnu 4:16.1.0-3 install ok installed cutadapt cutadapt 4.7-2 install ok installed dash dash 0.5.12-12 install ok installed dbus dbus 1.16.2-8 install ok installed dbus-bin dbus-bin 1.16.2-8 install ok installed dbus-daemon dbus-daemon 1.16.2-8 install ok installed dbus-session-bus-common dbus-session-bus-common 1.16.2-8 install ok installed dbus-system-bus-common dbus-system-bus-common 1.16.2-8 install ok installed dbus-user-session dbus-user-session 1.16.2-8 install ok installed dconf-gsettings-backend:amd64 dconf-gsettings-backend 51.0-2 install ok installed dconf-service dconf-service 51.0-2 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed default-jre default-jre 2:1.25-77 install ok installed default-jre-headless default-jre-headless 2:1.25-77 install ok installed diffutils diffutils 1:3.12-1 install ok installed docutils-common docutils-common 0.23+dfsg-2 install ok installed dpkg dpkg 1.23.11 install ok installed dpkg-dev dpkg-dev 1.23.11 install ok installed fastp fastp 1.0.1+dfsg-1 install ok installed fastqc fastqc 0.12.1+dfsg-4 install ok installed findutils findutils 4.11.0-3 install ok installed fontconfig fontconfig 2.17.1-5 install ok installed fontconfig-config fontconfig-config 2.17.1-5 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-9 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-9 install ok installed fonts-font-awesome fonts-font-awesome 7.3.0+dfsg-1 install ok installed fonts-font-awesome-legacy fonts-font-awesome-legacy 6-4 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-7 install ok installed fonts-lyx fonts-lyx 2.5.3-2 install ok installed fonts-mathjax fonts-mathjax 2.7.9+dfsg-1 install ok installed g++ g++ 4:16.1.0-3 install ok installed g++-16 g++-16 16.2.0-3 install ok installed g++-16-x86-64-linux-gnu g++-16-x86-64-linux-gnu 16.2.0-3 install ok installed g++-x86-64-linux-gnu g++-x86-64-linux-gnu 4:16.1.0-3 install ok installed gcc gcc 4:16.1.0-3 install ok installed gcc-16 gcc-16 16.2.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed gcc-16-x86-64-linux-gnu gcc-16-x86-64-linux-gnu 16.2.0-3 install ok installed gcc-x86-64-linux-gnu gcc-x86-64-linux-gnu 4:16.1.0-3 install ok installed git git 1:2.55.0-1 install ok installed git-man git-man 1:2.55.0-1 install ok installed glycin-loaders glycin-loaders 2.2.3+ds-1 install ok installed glycin-thumbnailers glycin-thumbnailers 2.2.3+ds-1 install ok installed grep grep 3.12-1 install ok installed gsettings-desktop-schemas gsettings-desktop-schemas 51.0-2 install ok installed gtk-update-icon-cache gtk-update-icon-cache 4.24.1+ds-1 install ok installed gzip gzip 1.14-1 install ok installed hicolor-icon-theme hicolor-icon-theme 0.18-2 install ok installed hisat2 hisat2 2.2.1-5+b4 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed java-common java-common 0.77 install ok installed javascript-common javascript-common 12+nmu1 install ok installed junit4 junit4 4.13.2-6 install ok installed libabsl20260526:amd64 libabsl20260526 20260526.0-2+b1 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libaom3:amd64 libaom3 3.14.1-1 install ok installed libapache-pom-java libapache-pom-java 33-2 install ok installed libapparmor1:amd64 libapparmor1 4.1.8-3 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libasan8:amd64 libasan8 16.2.0-3 install ok installed libasound2-data libasound2-data 1.2.16.1-2 install ok installed libasound2t64:amd64 libasound2t64 1.2.16.1-2 install ok installed libatk-bridge2.0-0t64:amd64 libatk-bridge2.0-0t64 2.62.1-1 install ok installed libatk1.0-0t64:amd64 libatk1.0-0t64 2.62.1-1 install ok installed libatomic1:amd64 libatomic1 16.2.0-3 install ok installed libatspi2.0-0t64:amd64 libatspi2.0-0t64 2.62.1-1 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.2.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.2.1-1 install ok installed libavahi-client3:amd64 libavahi-client3 0.8-18 install ok installed libavahi-common-data:amd64 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libbrotli1 1.2.0-4+b1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-7 install ok installed libc-dev-bin libc-dev-bin 2.43-7 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-7 install ok installed libc6:amd64 libc6 2.43-7 install ok installed libc6-dev:amd64 libc6-dev 2.43-7 install ok installed libcairo-gobject2:amd64 libcairo-gobject2 1.18.4-3+b1 install ok installed libcairo2:amd64 libcairo2 1.18.4-3+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcap2:amd64 libcap2 1:2.78-1+b1 install ok installed libcc1-0:amd64 libcc1-0 16.2.0-3 install ok installed libcloudproviders0:amd64 libcloudproviders0 0.4.1-1 install ok installed libcolord2:amd64 libcolord2 1.4.8-3 install ok installed libcom-err2:amd64 libcom-err2 1.47.4-1+b2 install ok installed libcommons-beanutils-java libcommons-beanutils-java 1.10.1-1.1 install ok installed libcommons-codec-java libcommons-codec-java 1.22.1-1 install ok installed libcommons-collections3-java libcommons-collections3-java 3.2.2-4 install ok installed libcommons-collections4-java libcommons-collections4-java 4.6.0-1 install ok installed libcommons-compress-java libcommons-compress-java 1.27.1-2 install ok installed libcommons-io-java libcommons-io-java 2.22.0-1 install ok installed libcommons-jexl2-java libcommons-jexl2-java 2.1.1-6 install ok installed libcommons-lang3-java libcommons-lang3-java 3.20.0-1 install ok installed libcommons-logging-java libcommons-logging-java 1.3.0-2 install ok installed libcommons-math3-java libcommons-math3-java 3.6.1-4 install ok installed libcommons-parent-java libcommons-parent-java 56-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.47-6 install ok installed libctf0:amd64 libctf0 2.47-6 install ok installed libcups2t64:amd64 libcups2t64 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install ok installed libedit2:amd64 libedit2 3.1-20260512-1 install ok installed libelf1t64:amd64 libelf1t64 0.196-1 install ok installed libepoxy0:amd64 libepoxy0 1.5.10-2+b2 install ok installed liberror-perl liberror-perl 0.17030-1 install ok installed libexpat1:amd64 libexpat1 2.9.0-1 install ok installed libezmorph-java libezmorph-java 1.0.6-4 install ok installed libffi8:amd64 libffi8 3.8.0-2 install ok installed libfindbin-libs-perl libfindbin-libs-perl 4.0.4-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.17.1-5 install ok installed libfreetype6:amd64 libfreetype6 2.14.3+dfsg-3 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-5+b1 install ok installed libgav1-2:amd64 libgav1-2 0.20.0-2+b2 install ok installed libgbm1:amd64 libgbm1 26.2.5-1 install ok installed libgcc-16-dev:amd64 libgcc-16-dev 16.2.0-3 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.12.4-2 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1+b2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1+b2 install ok installed libgdk-pixbuf-2.0-0:amd64 libgdk-pixbuf-2.0-0 2.44.8+dfsg-1 install ok installed libgdk-pixbuf2.0-common libgdk-pixbuf2.0-common 2.44.8+dfsg-1 install ok installed libgfortran5:amd64 libgfortran5 16.2.0-3 install ok installed libgif7:amd64 libgif7 6.1.3-1 install ok installed libgl1:amd64 libgl1 1.7.0-3+b1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 26.2.5-1 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.90.1-2 install ok installed libglvnd0:amd64 libglvnd0 1.7.0-3+b1 install ok installed libglx-mesa0:amd64 libglx-mesa0 26.2.5-1 install ok installed libglx0:amd64 libglx0 1.7.0-3+b1 install ok installed libglycin-2-0:amd64 libglycin-2-0 2.2.3+ds-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.13-1 install ok installed libgomp1:amd64 libgomp1 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install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-7 install ok installed libjs-bootstrap4 libjs-bootstrap4 4.6.2+dfsg-3 install ok installed libjs-d3 libjs-d3 3.5.17-4 install ok installed libjs-es5-shim libjs-es5-shim 4.6.7-2 install ok installed libjs-highlight.js libjs-highlight.js 10.7.3+dfsg-6 install ok installed libjs-jquery libjs-jquery 3.7.1+dfsg+~3.5.33-1 install ok installed libjs-jquery-datatables libjs-jquery-datatables 1.11.5+dfsg-2 install ok installed libjs-jquery-datatables-extensions libjs-jquery-datatables-extensions 0.0+git20150910.28fd64e+dfsg-5 install ok installed libjs-jquery-metadata libjs-jquery-metadata 12-4 install ok installed libjs-jquery-selectize.js libjs-jquery-selectize.js 0.12.6+dfsg-1.1 install ok installed libjs-jquery-tablesorter libjs-jquery-tablesorter 1:2.31.3+dfsg1-5 install ok installed libjs-jquery-ui libjs-jquery-ui 1.14.2+dfsg-1 install ok installed libjs-json libjs-json 0~20221030+~1.0.8-1 install ok installed libjs-mathjax 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liblapack3 3.12.1-8 install ok installed liblcms2-2:amd64 liblcms2-2 2.19.1-1 install ok installed libldap2:amd64 libldap2 2.6.14+dfsg-2 install ok installed liblerc4:amd64 liblerc4 4.2.0+ds-1 install ok installed libllvm22:amd64 libllvm22 1:22.1.8-3 install ok installed liblog4j1.2-java liblog4j1.2-java 1.2.17-11 install ok installed liblsan0:amd64 liblsan0 16.2.0-3 install ok installed liblua5.4-0:amd64 liblua5.4-0 5.4.9-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmbedcrypto16:amd64 libmbedcrypto16 3.6.7-3 install ok installed libmbedtls21:amd64 libmbedtls21 3.6.7-3 install ok installed libmbedx509-7:amd64 libmbedx509-7 3.6.7-3 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libmpc3:amd64 libmpc3 1.3.1-3 install ok installed libmpfr6:amd64 libmpfr6 4.2.2-3 install ok installed libncbi-ngs3:amd64 libncbi-ngs3 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install ok installed libpixman-1-0:amd64 libpixman-1-0 0.46.4-1+b2 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.59-1 install ok installed libproc2-1:amd64 libproc2-1 2:4.0.7-1 install ok installed libpsl5t64:amd64 libpsl5t64 0.23.3-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.14.7-3 install ok installed libpython3.14:amd64 libpython3.14 3.14.8-1 install ok installed libpython3.14-minimal:amd64 libpython3.14-minimal 3.14.8-1 install ok installed libpython3.14-stdlib:amd64 libpython3.14-stdlib 3.14.8-1 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-9 install ok installed libquadmath0:amd64 libquadmath0 16.2.0-3 install ok installed libraqm0:amd64 libraqm0 0.10.5-1 install ok installed librav1e0.8:amd64 librav1e0.8 0.8.1-12 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed librhino-java librhino-java 1.7.15.1-0.1 install ok installed librsvg2-2:amd64 librsvg2-2 2.63.2+dfsg-1 install ok installed 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libtext-charwidth-perl 0.04-12+b1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-11 install ok installed libthai-data libthai-data 0.1.30-3 install ok installed libthai0:amd64 libthai0 0.1.30-3 install ok installed libtiff6:amd64 libtiff6 4.7.2-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libtirpc-common libtirpc-common 1.3.7+ds-1 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.7+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.18-1 install ok installed libtsan2:amd64 libtsan2 16.2.0-3 install ok installed libubsan1:amd64 libubsan1 16.2.0-3 install ok installed libudev1:amd64 libudev1 262.1-1 install ok installed libunistring5:amd64 libunistring5 1.4.2-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libuv1t64:amd64 libuv1t64 1.53.0-1 install ok installed libvulkan1:amd64 libvulkan1 1.4.363.0-1 install ok installed libwayland-client0:amd64 libwayland-client0 1.26.0-1 install ok installed libwayland-cursor0:amd64 libwayland-cursor0 1.26.0-1 install ok installed libwayland-egl1:amd64 libwayland-egl1 1.26.0-1 install ok installed libwebp7:amd64 libwebp7 1.6.0-0.1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.6.0-0.1 install ok installed libwebpmux3:amd64 libwebpmux3 1.6.0-0.1 install ok installed libx11-6:amd64 libx11-6 2:1.8.13-1 install ok installed libx11-data libx11-data 2:1.8.13-1 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.8.13-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1+b2 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.17.0-2+b2 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.17.0-2+b2 install ok installed libxcb-present0:amd64 libxcb-present0 1.17.0-2+b2 install ok installed libxcb-randr0:amd64 libxcb-randr0 1.17.0-2+b2 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b2 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.17.0-2+b2 install ok installed libxcb-xfixes0:amd64 libxcb-xfixes0 1.17.0-2+b2 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b2 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.6-1+b2 install ok installed libxcursor1:amd64 libxcursor1 1:1.2.3-1+b2 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.7-1+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-2+b1 install ok installed libxerces2-java libxerces2-java 2.12.2-1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b4 install ok installed libxfixes3:amd64 libxfixes3 1:6.0.0-2+b5 install ok installed libxft2:amd64 libxft2 2.3.6-1+b5 install ok installed libxi6:amd64 libxi6 2:1.8.3-1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.4-3+b5 install ok installed libxkbcommon0:amd64 libxkbcommon0 1.13.1-1 install ok installed libxml-commons-external-java libxml-commons-external-java 1.4.01-6 install ok installed libxml-commons-resolver1.1-java libxml-commons-resolver1.1-java 1.2-11 install ok installed libxml2-16:amd64 libxml2-16 2.15.4+dfsg-1 install ok installed libxom-java libxom-java 1.4.6-2 install ok installed libxrandr2:amd64 libxrandr2 2:1.5.4-1+b4 install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1+b2 install ok installed libxres1:amd64 libxres1 2:1.2.1-2 install ok installed libxshmfence1:amd64 libxshmfence1 1.3.3-1+b2 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.45-0.1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b4 install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.3+b2 install ok installed libxtst6:amd64 libxtst6 2:1.2.5-1+b2 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-2+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-2+b1 install ok installed libyuv0:amd64 libyuv0 0.0.1974.20261008-1 install ok installed libz3-4:amd64 libz3-4 4.13.3-1.1 install ok installed libzopfli1 libzopfli1 1.0.3-3 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed linux-libc-dev linux-libc-dev 7.2.11-1 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.3-1 install ok installed make make 4.4.1-3 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed media-types media-types 14.0.0 install ok installed megadepth megadepth 1.2.0-5+b1 install ok installed mesa-libgallium:amd64 mesa-libgallium 26.2.5-1 install ok installed mount mount 2.42.4-1 install ok installed multiqc multiqc 1.21+dfsg-4 install ok installed ncbi-vdb-data ncbi-vdb-data 3.4.1+dfsg-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed netbase netbase 6.6 install ok installed node-bootstrap-sass node-bootstrap-sass 3.4.3-2 install ok installed node-html5shiv node-html5shiv 3.7.3+dfsg-5 install ok installed node-normalize.css node-normalize.css 8.0.1-5.1 install ok installed openjdk-25-jre:amd64 openjdk-25-jre 25.0.5~7ea-2 install ok installed openjdk-25-jre-headless:amd64 openjdk-25-jre-headless 25.0.5~7ea-2 install ok installed openssl openssl 3.6.5-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed pandoc pandoc 3.11-1 install ok installed pandoc-data pandoc-data 3.11-1 install ok installed passwd passwd 1:4.20.3-1 install ok installed patch patch 2.8-2 install ok installed pci.ids pci.ids 0.0~2026.09.23-1 install ok installed perl perl 5.42.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed perl-modules-5.42 perl-modules-5.42 5.42.3-1 install ok installed pigx-rnaseq pigx-rnaseq 0.1.1-4 install ok installed pigz pigz 2.8-2 install ok installed procps procps 2:4.0.7-1 install ok installed python-babel-localedata python-babel-localedata 2.18.0+git2026-08-12-3 install ok installed python-matplotlib-data python-matplotlib-data 3.10.9+dfsg1-2 install ok installed python3 python3 3.14.7-3 install ok installed python3-alabaster python3-alabaster 1.0.0-2 install ok installed python3-attr python3-attr 26.1.0-1 install ok installed python3-babel python3-babel 2.18.0+git2026-08-12-3 install ok installed python3-brotli python3-brotli 1.2.0-4+b1 install ok installed python3-certifi python3-certifi 2026.7.22+ds-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.7-2+b1 install ok installed python3-click python3-click 8.3.3-3 install ok installed python3-coloredlogs python3-coloredlogs 15.0.1-2 install ok installed python3-colormath python3-colormath 3.0.0-4 install ok installed python3-configargparse python3-configargparse 1.7-4 install ok installed python3-connection-pool python3-connection-pool 0.0.3-2 install ok installed python3-contourpy python3-contourpy 1.3.3-2+b1 install ok installed python3-cutadapt python3-cutadapt 4.7-2+b5 install ok installed python3-cycler python3-cycler 0.12.1-3 install ok installed python3-dateutil python3-dateutil 2.9.0-5 install ok installed python3-datrie python3-datrie 0.8.3-2+b2 install ok installed python3-decorator python3-decorator 5.3.1-1 install ok installed python3-deeptools python3-deeptools 3.5.6+dfsg-1 install ok installed python3-deeptoolsintervals python3-deeptoolsintervals 0.1.9-3+b13 install ok installed python3-defusedxml python3-defusedxml 0.7.1-3 install ok installed python3-dnaio python3-dnaio 1.2.4-1+b2 install ok installed python3-docutils python3-docutils 0.23+dfsg-2 install ok installed python3-dpath python3-dpath 2.2.0-2 install ok installed python3-fastjsonschema python3-fastjsonschema 2.22.1-1 install ok installed python3-fonttools python3-fonttools 4.65.0-1 install ok installed python3-git python3-git 3.2.1-1 install ok installed python3-gitdb python3-gitdb 4.0.12-2 install ok installed python3-htseq python3-htseq 2.0.9+dfsg-1+b4 install ok installed python3-humanfriendly python3-humanfriendly 10.0-7 install ok installed python3-humanize python3-humanize 4.16.0-1 install ok installed python3-idna python3-idna 3.20-1 install ok installed python3-imagesize python3-imagesize 2.0.1-1 install ok installed python3-jinja2 python3-jinja2 3.1.6-4 install ok installed python3-jsonschema python3-jsonschema 4.26.0-3 install ok installed python3-jsonschema-specifications python3-jsonschema-specifications 2025.9.1-1 install ok installed python3-jupyter-core python3-jupyter-core 5.9.1-1 install ok installed python3-kiwisolver python3-kiwisolver 1.5.1-1 install ok installed python3-linkify-it python3-linkify-it 2.2.0-1 install ok installed python3-lxml:amd64 python3-lxml 6.1.3-1 install ok installed python3-lz4 python3-lz4 4.4.5+dfsg-1+b1 install ok installed python3-lzstring python3-lzstring 1.0.4-3 install ok installed python3-markdown python3-markdown 3.10.3-1 install ok installed python3-markdown-it python3-markdown-it 4.2.0-4 install ok installed python3-markupsafe python3-markupsafe 3.0.3-2+b1 install ok installed python3-matplotlib python3-matplotlib 3.10.9+dfsg1-2 install ok installed python3-mdurl python3-mdurl 0.1.2-2 install ok installed python3-minimal python3-minimal 3.14.7-3 install ok installed python3-mpmath python3-mpmath 1.4.1-4 install ok installed python3-nbformat python3-nbformat 5.10.4-3 install ok installed python3-networkx python3-networkx 3.4.2-6 install ok installed python3-numpy python3-numpy 1:2.4.6+ds-5 install ok installed python3-numpy-dev:amd64 python3-numpy-dev 1:2.4.6+ds-5 install ok installed python3-numpydoc python3-numpydoc 1.9.0-2 install ok installed python3-packaging python3-packaging 26.2-3 install ok installed python3-pil:amd64 python3-pil 12.3.0-1+b1 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 12.3.0-1+b1 install ok installed python3-plac python3-plac 1.4.5-3 install ok installed python3-platformdirs python3-platformdirs 4.11.9-1 install ok installed python3-plotly python3-plotly 5.20.0+dfsg-1.1 install ok installed python3-psutil python3-psutil 7.2.2-2 install ok installed python3-pulp python3-pulp 2.7.0+dfsg-5 install ok installed python3-py2bit python3-py2bit 0.3.3-1+b3 install ok installed python3-pyaml-env python3-pyaml-env 1.2.1-2 install ok installed python3-pybigwig python3-pybigwig 0.3.25+dfsg-1+b1 install ok installed python3-pygments python3-pygments 2.20.0+dfsg-2 install ok installed python3-pyparsing python3-pyparsing 3.3.3-2 install ok installed python3-pysam python3-pysam 0.24.1+ds-2 install ok installed python3-pytz python3-pytz 2026.5-1 install ok installed python3-referencing python3-referencing 0.37.0+~2025.1.1-3 install ok installed python3-requests python3-requests 2.34.2-1 install ok installed python3-retry python3-retry 0.9.2-5 install ok installed python3-rich python3-rich 15.0.0-2 install ok installed python3-rich-click python3-rich-click 1.9.9-1 install ok installed python3-roman-numerals python3-roman-numerals 4.1.0-1 install ok installed python3-rpds-py python3-rpds-py 0.30.0-2+b1 install ok installed python3-scipy python3-scipy 1.17.1-5+b1 install ok installed python3-smart-open python3-smart-open 7.5.1-2 install ok installed python3-smmap python3-smmap 6.0.0-2 install ok installed python3-snowballstemmer python3-snowballstemmer 3.1.1-1 install ok installed python3-spectra python3-spectra 0.1.0-2 install ok installed python3-sphinx python3-sphinx 9.1.0-9 install ok installed python3-stopit python3-stopit 1.1.2-4 install ok installed python3-sympy python3-sympy 1.14.0-6 install ok installed python3-tabulate python3-tabulate 0.10.0-1 install ok installed python3-tenacity python3-tenacity 9.1.4-2 install ok installed python3-throttler python3-throttler 1.2.3-1 install ok installed python3-tk python3-tk 3.14.7-3 install ok installed python3-toposort python3-toposort 1.10-2 install ok installed python3-traitlets python3-traitlets 5.16.1-1 install ok installed python3-uc-micro python3-uc-micro 2.0.0-1 install ok installed python3-ufolib2 python3-ufolib2 0.18.1+dfsg1-2 install ok installed python3-uharfbuzz python3-uharfbuzz 0.53.3-1+b1 install ok installed python3-urllib3 python3-urllib3 2.8.0-2 install ok installed python3-wrapt python3-wrapt 2.3.0-1 install ok installed python3-xopen python3-xopen 1.7.0-4 install ok installed python3-yaml python3-yaml 6.0.3-1+b1 install ok installed python3-yte python3-yte 1.5.4-1 install ok installed python3-zopfli python3-zopfli 0.4.3-2 install ok installed python3.14 python3.14 3.14.8-1 install ok installed python3.14-minimal python3.14-minimal 3.14.8-1 install ok installed python3.14-tk python3.14-tk 3.14.8-1 install ok installed r-base-core r-base-core 4.6.1-9 install ok installed r-bioc-biobase r-bioc-biobase 2.72.0-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.58.1-2 install ok installed r-bioc-biocio r-bioc-biocio 1.22.0+dfsg-1 install ok installed r-bioc-biocparallel r-bioc-biocparallel 1.46.0-1 install ok installed r-bioc-biostrings r-bioc-biostrings 2.80.2+dfsg-1 install ok installed r-bioc-cigarillo r-bioc-cigarillo 1.2.1+dfsg-1 install ok installed r-bioc-delayedarray r-bioc-delayedarray 0.38.2+dfsg-1 install ok installed r-bioc-deseq2 r-bioc-deseq2 1.52.0+dfsg-1 install ok installed r-bioc-genomeinfodb r-bioc-genomeinfodb 1.48.0+dfsg-1 install ok installed r-bioc-genomicalignments r-bioc-genomicalignments 1.48.0+dfsg-1 install ok installed r-bioc-genomicranges r-bioc-genomicranges 1.64.0+dfsg-1 install ok installed r-bioc-iranges r-bioc-iranges 2.46.0-1 install ok installed r-bioc-matrixgenerics r-bioc-matrixgenerics 1.24.0-1 install ok installed r-bioc-rhtslib r-bioc-rhtslib 3.8.0+dfsg-1 install ok installed r-bioc-rsamtools r-bioc-rsamtools 2.28.0+dfsg-1+b1 install ok installed r-bioc-rtracklayer r-bioc-rtracklayer 1.72.0+ds-1+b1 install ok installed r-bioc-s4arrays r-bioc-s4arrays 1.12.1+dfsg-1 install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.50.3+dfsg-1 install ok installed r-bioc-seqinfo r-bioc-seqinfo 1.2.0+dfsg-1 install ok installed r-bioc-sparsearray r-bioc-sparsearray 1.12.3+dfsg-1 install ok installed r-bioc-summarizedexperiment r-bioc-summarizedexperiment 1.42.0+dfsg-1 install ok installed r-bioc-tximport r-bioc-tximport 1.40.0+dfsg-1 install ok installed r-bioc-ucsc.utils r-bioc-ucsc.utils 1.8.0+dfsg-1 install ok installed r-bioc-xvector r-bioc-xvector 0.52.0-1 install ok installed r-cran-abind r-cran-abind 1.4-8-1 install ok installed r-cran-askpass r-cran-askpass 1.2.1-3 install ok installed r-cran-backports r-cran-backports 1.5.1-2 install ok installed r-cran-base64enc r-cran-base64enc 0.1-6-2 install ok installed r-cran-bh r-cran-bh 1.90.0-1 install ok installed r-cran-bitops r-cran-bitops 1.1-0-1 install ok installed r-cran-boot r-cran-boot 1.3-32-1 install ok installed r-cran-broom r-cran-broom 1.0.13+dfsg-2 install ok installed r-cran-bslib r-cran-bslib 0.10.0+dfsg-1 install ok installed r-cran-cachem r-cran-cachem 1.1.0-3 install ok installed r-cran-car r-cran-car 3.1-5-1 install ok installed r-cran-cardata r-cran-cardata 3.0.6-1 install ok installed r-cran-caret r-cran-caret 7.0-1+dfsg-2 install ok installed r-cran-class r-cran-class 7.3-24-1 install ok installed r-cran-cli r-cran-cli 3.6.6-1 install ok installed r-cran-clock r-cran-clock 0.7.4-2 install ok installed r-cran-codetools r-cran-codetools 0.2-20-1 install ok installed r-cran-colorspace r-cran-colorspace 2.1-4+dfsg-1 install ok installed r-cran-colourpicker r-cran-colourpicker 1.3.0+dfsg-2 install ok installed r-cran-commonmark r-cran-commonmark 2.0.0-3 install ok installed r-cran-conquer r-cran-conquer 1.3.3-1 install ok installed r-cran-corrplot r-cran-corrplot 0.95-2 install ok installed r-cran-cowplot r-cran-cowplot 1.2.0+dfsg-1 install ok installed r-cran-cpp11 r-cran-cpp11 0.5.5-1 install ok installed r-cran-crayon r-cran-crayon 1.5.3-2 install ok installed r-cran-crosstalk r-cran-crosstalk 1.2.2+dfsg-1 install ok installed r-cran-curl r-cran-curl 8.0.0+dfsg-1 install ok installed r-cran-data.table r-cran-data.table 1.18.6.1+dfsg-1 install ok installed r-cran-deriv r-cran-deriv 4.3.5-1 install ok installed r-cran-diagram r-cran-diagram 1.6.5-3 install ok installed r-cran-digest r-cran-digest 0.6.39-1 install ok installed r-cran-doby r-cran-doby 4.7.2-2 install ok installed r-cran-dplyr r-cran-dplyr 1.2.1-2 install ok installed r-cran-dt r-cran-dt 0.34.0+dfsg-1 install ok installed r-cran-e1071 r-cran-e1071 1.7-17-1 install ok installed r-cran-evaluate r-cran-evaluate 1.0.5-3 install ok installed r-cran-farver r-cran-farver 2.1.2-3 install ok installed r-cran-fastmap r-cran-fastmap 1.2.0-3 install ok installed r-cran-fontawesome r-cran-fontawesome 0.5.3-2 install ok installed r-cran-foreach r-cran-foreach 1.5.2-1 install ok installed r-cran-forecast r-cran-forecast 9.0.2-2 install ok installed r-cran-formatr r-cran-formatr 1.14-3 install ok installed r-cran-formula r-cran-formula 1.2-6-1 install ok installed r-cran-fracdiff r-cran-fracdiff 1.5-4-1 install ok installed r-cran-fs r-cran-fs 2.1.0+dfsg-1 install ok installed r-cran-futile.logger r-cran-futile.logger 1.4.9-2 install ok installed r-cran-futile.options r-cran-futile.options 1.0.1-4 install ok installed r-cran-future r-cran-future 1.75.0+dfsg-1 install ok installed r-cran-future.apply r-cran-future.apply 1.20.2+dfsg-1 install ok installed r-cran-generics r-cran-generics 0.1.4-1 install ok installed r-cran-ggplot2 r-cran-ggplot2 4.0.3+dfsg-1 install ok installed r-cran-ggpubr r-cran-ggpubr 1.0.0-1 install ok installed r-cran-ggrepel r-cran-ggrepel 0.9.8-1 install ok installed r-cran-ggsci r-cran-ggsci 5.2.0-1 install ok installed r-cran-ggsignif r-cran-ggsignif 0.6.4-2 install ok installed r-cran-globals r-cran-globals 0.19.1-2 install ok installed r-cran-glue r-cran-glue 1.8.1-2 install ok installed r-cran-gower r-cran-gower 1.0.2-2 install ok installed r-cran-gprofiler2 r-cran-gprofiler2 0.2.4+dfsg-1 install ok installed r-cran-gridextra r-cran-gridextra 2.3.1-1 install ok installed r-cran-gtable r-cran-gtable 0.3.6+dfsg-2 install ok installed r-cran-hardhat r-cran-hardhat 1.4.3+dfsg-1 install ok installed r-cran-highr r-cran-highr 0.12+dfsg-1 install ok installed r-cran-htmltools r-cran-htmltools 0.5.9-2 install ok installed r-cran-htmlwidgets r-cran-htmlwidgets 1.6.4+dfsg-2 install ok installed r-cran-httpuv r-cran-httpuv 1.6.17+dfsg-1 install ok installed r-cran-httr r-cran-httr 1.4.9+dfsg-1 install ok installed r-cran-ipred r-cran-ipred 0.9-16-1 install ok installed r-cran-isoband r-cran-isoband 0.3.0-1 install ok installed r-cran-iterators r-cran-iterators 1.0.14-1 install ok installed r-cran-jquerylib r-cran-jquerylib 0.1.4+dfsg-6 install ok installed r-cran-jsonlite r-cran-jsonlite 2.0.0+dfsg-2 install ok installed r-cran-kernsmooth r-cran-kernsmooth 2.23-27-1 install ok installed r-cran-knitr r-cran-knitr 1.51+dfsg-2 install ok installed r-cran-labeling r-cran-labeling 0.4.3-2 install ok installed r-cran-lambda.r r-cran-lambda.r 1.2.4-3 install ok installed r-cran-later r-cran-later 1.4.8+dfsg-3 install ok installed r-cran-lattice r-cran-lattice 0.23-1-1 install ok installed r-cran-lava r-cran-lava 1.9.3+dfsg-1 install ok installed r-cran-lazyeval r-cran-lazyeval 0.2.3-1 install ok installed r-cran-lifecycle r-cran-lifecycle 1.0.5+dfsg-1 install ok installed r-cran-listenv r-cran-listenv 1.1.0+dfsg-1 install ok installed r-cran-littler r-cran-littler 0.3.23-1 install ok installed r-cran-lme4 r-cran-lme4 2.0-6-1 install ok installed r-cran-lmtest r-cran-lmtest 0.9.40-1 install ok installed r-cran-locfit r-cran-locfit 1.5-9.12-2 install ok installed r-cran-lubridate r-cran-lubridate 1.9.5+dfsg-2 install ok installed r-cran-magrittr r-cran-magrittr 2.0.5-1 install ok installed r-cran-mass r-cran-mass 7.3-66-1 install ok installed r-cran-matrix r-cran-matrix 1.7-6-1 install ok installed r-cran-matrixmodels r-cran-matrixmodels 0.5-4-2 install ok installed r-cran-matrixstats r-cran-matrixstats 1.5.0-3 install ok installed r-cran-memoise r-cran-memoise 2.0.1-2 install ok installed r-cran-mgcv r-cran-mgcv 1.9-4-1 install ok installed r-cran-microbenchmark r-cran-microbenchmark 1.5.0-1 install ok installed r-cran-mime r-cran-mime 0.13-2 install ok installed r-cran-miniui r-cran-miniui 0.1.2-1 install ok installed r-cran-minqa r-cran-minqa 1.2.8-1 install ok installed r-cran-modelmetrics r-cran-modelmetrics 1.2.2.2-2 install ok installed r-cran-modelr r-cran-modelr 0.1.11-3 install ok installed r-cran-nlme r-cran-nlme 3.1.171-1 install ok installed r-cran-nloptr r-cran-nloptr 2.2.1-2+b1 install ok installed r-cran-nnet r-cran-nnet 7.3-21-1 install ok installed r-cran-numderiv r-cran-numderiv 2016.8-1.1-3 install ok installed r-cran-openssl r-cran-openssl 2.4.2+dfsg-1 install ok installed r-cran-otel r-cran-otel 0.2.0-1 install ok installed r-cran-parallelly r-cran-parallelly 1.47.0-1 install ok installed r-cran-pbkrtest r-cran-pbkrtest 0.5.5-2 install ok installed r-cran-pheatmap r-cran-pheatmap 1.0.13-1 install ok installed r-cran-pillar r-cran-pillar 1.11.1+dfsg-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-3 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.2.4-1 install ok installed r-cran-plotly r-cran-plotly 4.12.1+dfsg-1 install ok installed r-cran-plyr r-cran-plyr 1.8.9-2 install ok installed r-cran-polynom r-cran-polynom 1.4-1+dfsg-2 install ok installed r-cran-proc r-cran-proc 1.19.1-1 install ok installed r-cran-prodlim r-cran-prodlim 2026.03.11-1 install ok installed r-cran-progressr r-cran-progressr 1.0.0-1 install ok installed r-cran-promises r-cran-promises 1.5.0+dfsg-3 install ok installed r-cran-proxy r-cran-proxy 0.4-29-1 install ok installed r-cran-purrr r-cran-purrr 1.2.2-1 install ok installed r-cran-quantreg r-cran-quantreg 6.1-1 install ok installed r-cran-r6 r-cran-r6 2.6.1-2 install ok installed r-cran-rappdirs r-cran-rappdirs 0.3.4-2 install ok installed r-cran-rbibutils r-cran-rbibutils 2.4.1-3 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-3-2 install ok installed r-cran-rcpp r-cran-rcpp 1.1.2-1 install ok installed r-cran-rcpparmadillo r-cran-rcpparmadillo 15.6.2-1-1 install ok installed r-cran-rcppeigen r-cran-rcppeigen 0.3.4.0.2-1 install ok installed r-cran-rcurl r-cran-rcurl 1.98-1.20+dfsg-1 install ok installed r-cran-rdpack r-cran-rdpack 2.6.6-1 install ok installed r-cran-recipes r-cran-recipes 1.3.3+dfsg-2 install ok installed r-cran-reformulas r-cran-reformulas 0.4.4-1 install ok installed r-cran-reshape2 r-cran-reshape2 1.4.5-1 install ok installed r-cran-restfulr r-cran-restfulr 0.0.17-1 install ok installed r-cran-rjson r-cran-rjson 0.2.23-1+b1 install ok installed r-cran-rlang r-cran-rlang 1.3.0-1 install ok installed r-cran-rmarkdown r-cran-rmarkdown 2.31+dfsg-1 install ok installed r-cran-rpart r-cran-rpart 4.1.27-1 install ok installed r-cran-rstatix r-cran-rstatix 1.1.0-1 install ok installed r-cran-s7 r-cran-s7 0.2.2-1 install ok installed r-cran-sass r-cran-sass 0.4.10+dfsg-3 install ok installed r-cran-scales r-cran-scales 1.4.0-1 install ok installed r-cran-shape r-cran-shape 1.4.6.1-2 install ok installed r-cran-shiny r-cran-shiny 1.13.0+dfsg-1 install ok installed r-cran-shinyjs r-cran-shinyjs 2.1.1-1 install ok installed r-cran-snow r-cran-snow 1:0.4.4-2 install ok installed r-cran-sourcetools r-cran-sourcetools 0.1.7-2-2 install ok installed r-cran-sparsem r-cran-sparsem 1.84-2-1+b1 install ok installed r-cran-sparsevctrs r-cran-sparsevctrs 0.3.6-2 install ok installed r-cran-squarem r-cran-squarem 2026.1-1 install ok installed r-cran-statmod r-cran-statmod 1.5.2-1 install ok installed r-cran-stringi r-cran-stringi 1.8.9-1 install ok installed r-cran-stringr r-cran-stringr 1.6.0-1 install ok installed r-cran-survival r-cran-survival 3.8-12-1 install ok installed r-cran-sys r-cran-sys 3.4.3-3 install ok installed r-cran-tibble r-cran-tibble 3.3.1+dfsg-2 install ok installed r-cran-tidyr r-cran-tidyr 1.3.2-3 install ok installed r-cran-tidyselect r-cran-tidyselect 1.2.1+dfsg-3 install ok installed r-cran-timechange r-cran-timechange 0.4.0-1 install ok installed r-cran-timedate r-cran-timedate 4052.112-2 install ok installed r-cran-tinytex r-cran-tinytex 0.61-1 install ok installed r-cran-tzdb r-cran-tzdb 0.5.0-1 install ok installed r-cran-urca r-cran-urca 1.3-4-1 install ok installed r-cran-utf8 r-cran-utf8 1.2.6-2 install ok installed r-cran-vctrs r-cran-vctrs 0.7.3-2 install ok installed r-cran-viridislite r-cran-viridislite 0.4.3-1 install ok installed r-cran-withr r-cran-withr 3.0.3+dfsg-1 install ok installed r-cran-xfun r-cran-xfun 0.61+dfsg-1 install ok installed r-cran-xml r-cran-xml 3.99-0.25-1 install ok installed r-cran-xtable r-cran-xtable 1:1.8-8-1 install ok installed r-cran-yaml r-cran-yaml 2.3.12-2 install ok installed r-cran-zoo r-cran-zoo 1.9-1-1 install ok installed r-pkg-team-core-architecture r-pkg-team-core-architecture 20260707 install ok installed readline-common readline-common 8.3-4 install ok installed salmon salmon 1.10.3+ds1-3+b2 install ok installed samtools samtools 1.24-2 install ok installed sed sed 4.9-3 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sgml-base sgml-base 1.31+nmu1 install ok installed shared-mime-info shared-mime-info 2.4-5+b3 install ok installed snakemake snakemake 7.32.4-12 install ok installed sphinx-common sphinx-common 9.1.0-9 install ok installed sqv sqv 1.5.0-1 install ok installed systemd systemd 262.1-1 install ok installed systemd-sysv systemd-sysv 262.1-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed trim-galore trim-galore 0.6.10-1 install ok installed tzdata tzdata 2026e-1 install ok installed ucf ucf 3.0056 install ok installed unicode-data unicode-data 17.0.0-2 install ok installed unzip unzip 6.0-31 install ok installed user-session-migration user-session-migration 0.5.2 install ok installed util-linux util-linux 2.42.4-1 install ok installed x11-common x11-common 1:7.7+26 install ok installed xdg-utils xdg-utils 1.2.1-2 install ok installed xkb-data xkb-data 2.48-1 install ok installed xml-core xml-core 0.21 install ok installed xz-utils xz-utils 5.8.4-1 install ok installed zip zip 3.0-16 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 7m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 7m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'apt-get', 'remove', '--allow-remove-essential', 'adwaita-icon-theme', 'at-spi2-common', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bubblewrap', 'build-essential', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'coinor-cbc', 'coinor-libcbc3.1:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'cutadapt', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre', 'default-jre-headless', 'docutils-common', 'dpkg-dev', 'fastp', 'fastqc', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-font-awesome-legacy', 'fonts-glyphicons-halflings', 'fonts-lyx', 'fonts-mathjax', 'g++-', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'git', 'git-man', 'glycin-loaders', 'glycin-thumbnailers', 'gsettings-desktop-schemas', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'hisat2', 'java-common', 'javascript-common', 'junit4', 'libabsl20260526:amd64', 'libaom3:amd64', 'libapache-pom-java', 'libapparmor1:amd64', 'libasan8:amd64', 'libasound2-data', 'libasound2t64:amd64', 'libatk-bridge2.0-0t64:amd64', 'libatk1.0-0t64:amd64', 'libatomic1:amd64', 'libatspi2.0-0t64:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif16:amd64', 'libbigwig0t64:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost-filesystem1.92.0:amd64', 'libboost-iostreams1.92.0:amd64', 'libboost-program-options1.92.0:amd64', 'libboost-regex1.92-dev:amd64', 'libboost-regex1.92.0:amd64', 'libboost1.92-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcap2:amd64', 'libcc1-0:amd64', 'libcloudproviders0:amd64', 'libcolord2:amd64', 'libcom-err2:amd64', 'libcommons-beanutils-java', 'libcommons-codec-java', 'libcommons-collections3-java', 'libcommons-collections4-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcups2t64:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libepoxy0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libezmorph-java', 'libffi8:amd64', 'libfindbin-libs-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgbm1:amd64', 'libgcc-16-dev:amd64', 'libgcrypt20:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglib2.0-0t64:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libglycin-2-0:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0t64:amd64', 'libgtk-3-common', 'libhamcrest-java', 'libharfbuzz-subset0:amd64', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhtsjdk-java', 'libhwasan0:amd64', 'libhwloc15:amd64', 'libhwy1t64:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libisal2:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjaxen-java', 'libjbig0:amd64', 'libjbzip2-java', 'libjemalloc2:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-datatables-extensions', 'libjs-jquery-metadata', 'libjs-jquery-selectize.js', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-sphinxdoc', 'libjs-twitter-bootstrap-datepicker', 'libjson-java', 'libjson-perl', 'libjxl0.11:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'libllvm22:amd64', 'liblog4j1.2-java', 'liblsan0:amd64', 'liblua5.4-0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnlopt1:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-1:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.8:amd64', 'libreadline8t64:amd64', 'librhino-java', 'librsvg2-2:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libslf4j-java', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstaden-read14t64:amd64', 'libstdc++-16-dev:amd64', 'libsvtav1enc4:amd64', 'libsystemd-shared:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxerces2-java', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxml2-16:amd64', 'libxom-java', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxres1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'libzopfli1', 'linux-libc-dev', 'make', 'media-types', 'megadepth', 'mesa-libgallium:amd64', 'multiqc', 'ncbi-vdb-data', 'netbase', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openjdk-25-jre:amd64', 'openjdk-25-jre-headless:amd64', 'openssl', 'pandoc', 'pandoc-data', 'patch', 'pci.ids', 'perl', 'perl-modules-5.42', 'pigz', 'procps', 'python-babel-localedata', 'python-matplotlib-data', 'python3', 'python3-alabaster', 'python3-attr', 'python3-babel', 'python3-brotli', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-coloredlogs', 'python3-colormath', 'python3-configargparse', 'python3-connection-pool', 'python3-contourpy', 'python3-cutadapt', 'python3-cycler', 'python3-dateutil', 'python3-datrie', 'python3-decorator', 'python3-deeptools', 'python3-deeptoolsintervals', 'python3-defusedxml', 'python3-dnaio', 'python3-docutils', 'python3-dpath', 'python3-fastjsonschema', 'python3-fonttools', 'python3-git', 'python3-gitdb', 'python3-htseq', 'python3-humanfriendly', 'python3-humanize', 'python3-idna', 'python3-imagesize', 'python3-jinja2', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-jupyter-core', 'python3-kiwisolver', 'python3-linkify-it', 'python3-lxml:amd64', 'python3-lz4', 'python3-lzstring', 'python3-markdown', 'python3-markdown-it', 'python3-markupsafe', 'python3-matplotlib', 'python3-mdurl', 'python3-minimal', 'python3-mpmath', 'python3-nbformat', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-numpydoc', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-plac', 'python3-platformdirs', 'python3-plotly', 'python3-psutil', 'python3-pulp', 'python3-py2bit', 'python3-pyaml-env', 'python3-pybigwig', 'python3-pygments', 'python3-pyparsing', 'python3-pysam', 'python3-pytz', 'python3-referencing', 'python3-requests', 'python3-retry', 'python3-rich', 'python3-rich-click', 'python3-roman-numerals', 'python3-rpds-py', 'python3-scipy', 'python3-smart-open', 'python3-smmap', 'python3-snowballstemmer', 'python3-spectra', 'python3-sphinx', 'python3-stopit', 'python3-sympy', 'python3-tabulate', 'python3-tenacity', 'python3-throttler', 'python3-tk', 'python3-toposort', 'python3-traitlets', 'python3-uc-micro', 'python3-ufolib2', 'python3-uharfbuzz', 'python3-urllib3', 'python3-wrapt', 'python3-xopen', 'python3-yaml', 'python3-yte', 'python3-zopfli', 'python3.14', 'python3.14-minimal', 'python3.14-tk', 'r-base-core', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocio', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-cigarillo', 'r-bioc-delayedarray', 'r-bioc-deseq2', 'r-bioc-genomeinfodb', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-seqinfo', 'r-bioc-sparsearray', 'r-bioc-summarizedexperiment', 'r-bioc-tximport', 'r-bioc-ucsc.utils', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-askpass', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-bh', 'r-cran-bitops', 'r-cran-boot', 'r-cran-broom', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-car', 'r-cran-cardata', 'r-cran-caret', 'r-cran-class', 'r-cran-cli', 'r-cran-clock', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-colourpicker', 'r-cran-commonmark', 'r-cran-conquer', 'r-cran-corrplot', 'r-cran-cowplot', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-crosstalk', 'r-cran-curl', 'r-cran-data.table', 'r-cran-deriv', 'r-cran-diagram', 'r-cran-digest', 'r-cran-doby', 'r-cran-dplyr', 'r-cran-dt', 'r-cran-e1071', 'r-cran-evaluate', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-fontawesome', 'r-cran-foreach', 'r-cran-forecast', 'r-cran-formatr', 'r-cran-formula', 'r-cran-fracdiff', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-future', 'r-cran-future.apply', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-ggpubr', 'r-cran-ggrepel', 'r-cran-ggsci', 'r-cran-ggsignif', 'r-cran-globals', 'r-cran-glue', 'r-cran-gower', 'r-cran-gprofiler2', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-hardhat', 'r-cran-highr', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-ipred', 'r-cran-isoband', 'r-cran-iterators', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lava', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-listenv', 'r-cran-littler', 'r-cran-lme4', 'r-cran-lmtest', 'r-cran-locfit', 'r-cran-lubridate', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixmodels', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-microbenchmark', 'r-cran-mime', 'r-cran-miniui', 'r-cran-minqa', 'r-cran-modelmetrics', 'r-cran-modelr', 'r-cran-nlme', 'r-cran-nloptr', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-openssl', 'r-cran-otel', 'r-cran-parallelly', 'r-cran-pbkrtest', 'r-cran-pheatmap', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plotly', 'r-cran-plyr', 'r-cran-polynom', 'r-cran-proc', 'r-cran-prodlim', 'r-cran-progressr', 'r-cran-promises', 'r-cran-proxy', 'r-cran-purrr', 'r-cran-quantreg', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rbibutils', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-rcppeigen', 'r-cran-rcurl', 'r-cran-rdpack', 'r-cran-recipes', 'r-cran-reformulas', 'r-cran-reshape2', 'r-cran-restfulr', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rpart', 'r-cran-rstatix', 'r-cran-s7', 'r-cran-sass', 'r-cran-scales', 'r-cran-shape', 'r-cran-shiny', 'r-cran-shinyjs', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-sparsem', 'r-cran-sparsevctrs', 'r-cran-squarem', 'r-cran-statmod', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-timechange', 'r-cran-timedate', 'r-cran-tinytex', 'r-cran-tzdb', 'r-cran-urca', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xtable', 'r-cran-yaml', 'r-cran-zoo', 'r-pkg-team-core-architecture', 'readline-common', 'salmon', 'samtools', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'snakemake', 'sphinx-common', 'systemd', 'systemd-sysv', 'trim-galore', 'ucf', 'unicode-data', 'unzip', 'user-session-migration', 'x11-common', 'xdg-utils', 'xkb-data', 'xml-core', 'xz-utils', 'zip', 'pigx-rnaseq'] 7m39.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: adwaita-icon-theme at-spi2-common binutils binutils-common binutils-x86-64-linux-gnu bubblewrap build-essential bzip2 ca-certificates ca-certificates-java coinor-cbc coinor-libcbc3.1 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 cpp cpp-16 cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu cutadapt dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service default-jre default-jre-headless docutils-common dpkg-dev fastp fastqc fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-font-awesome-legacy fonts-glyphicons-halflings fonts-lyx fonts-mathjax g++ g++-16 g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-16 gcc-16-x86-64-linux-gnu gcc-x86-64-linux-gnu git git-man glycin-loaders glycin-thumbnailers gsettings-desktop-schemas gtk-update-icon-cache hicolor-icon-theme hisat2 java-common javascript-common junit4 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libjs-jquery-selectize.js libjs-jquery-tablesorter libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-sphinxdoc libjs-twitter-bootstrap-datepicker libjson-java libjson-perl libjxl0.11 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap2 liblerc4 libllvm22 liblog4j1.2-java liblsan0 liblua5.4-0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libmpc3 libmpfr6 libncbi-ngs3 libncbi-vdb3 libncurses6 libncursesw6 libnghttp2-14 libnghttp3-9 libngs-java libngs-jni libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libnlopt1 libnspr4 libnss3 libnuma1 libopenjp2-7 libp11-kit0 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpciaccess0 libpcsclite1 libperl5.42 libpixman-1-0 libpng16-16t64 libproc2-1 libpsl5t64 libpython3-stdlib libpython3.14 libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 libquadmath0 libraqm0 librav1e0.8 libreadline8t64 librhino-java librsvg2-2 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsframe3 libsharpyuv0 libslf4j-java libsm6 libsnappy-java libsnappy-jni libsnappy1v5 libsqlite3-0 libssh2-1t64 libstaden-read14t64 libstdc++-16-dev libsvtav1enc4 libsystemd-shared libtasn1-6 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunistring5 libuv1t64 libvulkan1 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxerces2-java libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon0 libxml-commons-external-java libxml-commons-resolver1.1-java libxml2-16 libxom-java libxrandr2 libxrender1 libxres1 libxshmfence1 libxslt1.1 libxss1 libxt6t64 libxtst6 libxxf86vm1 libyaml-0-2 libyuv0 libz3-4 libzopfli1 linux-libc-dev make media-types megadepth mesa-libgallium multiqc ncbi-vdb-data netbase node-bootstrap-sass node-html5shiv node-normalize.css openjdk-25-jre openjdk-25-jre-headless openssl pandoc pandoc-data patch pci.ids perl perl-modules-5.42 pigx-rnaseq pigz procps python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-attr python3-babel python3-brotli python3-certifi python3-chardet python3-charset-normalizer python3-click python3-coloredlogs python3-colormath python3-configargparse python3-connection-pool python3-contourpy python3-cutadapt python3-cycler python3-dateutil python3-datrie python3-decorator python3-deeptools python3-deeptoolsintervals python3-defusedxml python3-dnaio python3-docutils python3-dpath python3-fastjsonschema python3-fonttools python3-git python3-gitdb python3-htseq python3-humanfriendly python3-humanize python3-idna python3-imagesize python3-jinja2 python3-jsonschema python3-jsonschema-specifications python3-jupyter-core python3-kiwisolver python3-linkify-it python3-lxml python3-lz4 python3-lzstring python3-markdown python3-markdown-it python3-markupsafe python3-matplotlib python3-mdurl python3-minimal python3-mpmath python3-nbformat python3-networkx python3-numpy python3-numpy-dev python3-numpydoc python3-packaging python3-pil python3-pil.imagetk python3-plac python3-platformdirs python3-plotly python3-psutil python3-pulp python3-py2bit python3-pyaml-env python3-pybigwig python3-pygments python3-pyparsing python3-pysam python3-pytz python3-referencing python3-requests python3-retry python3-rich python3-rich-click python3-roman-numerals python3-rpds-py python3-scipy python3-smart-open python3-smmap python3-snowballstemmer python3-spectra python3-sphinx python3-stopit python3-sympy python3-tabulate python3-tenacity python3-throttler python3-tk python3-toposort python3-traitlets python3-uc-micro python3-ufolib2 python3-uharfbuzz python3-urllib3 python3-wrapt python3-xopen python3-yaml python3-yte python3-zopfli python3.14 python3.14-minimal python3.14-tk r-base-core r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings r-bioc-cigarillo r-bioc-delayedarray r-bioc-deseq2 r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-seqinfo r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-tximport r-bioc-ucsc.utils r-bioc-xvector r-cran-abind r-cran-askpass r-cran-backports r-cran-base64enc r-cran-bh r-cran-bitops r-cran-boot r-cran-broom r-cran-bslib r-cran-cachem r-cran-car r-cran-cardata r-cran-caret r-cran-class r-cran-cli r-cran-clock r-cran-codetools r-cran-colorspace r-cran-colourpicker r-cran-commonmark r-cran-conquer r-cran-corrplot r-cran-cowplot r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-deriv r-cran-diagram r-cran-digest r-cran-doby r-cran-dplyr r-cran-dt r-cran-e1071 r-cran-evaluate r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-foreach r-cran-forecast r-cran-formatr r-cran-formula r-cran-fracdiff r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-future r-cran-future.apply r-cran-generics r-cran-ggplot2 r-cran-ggpubr r-cran-ggrepel r-cran-ggsci r-cran-ggsignif r-cran-globals r-cran-glue r-cran-gower r-cran-gprofiler2 r-cran-gridextra r-cran-gtable r-cran-hardhat r-cran-highr r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-ipred r-cran-isoband r-cran-iterators r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lava r-cran-lazyeval r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lme4 r-cran-lmtest r-cran-locfit r-cran-lubridate r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixmodels r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-microbenchmark r-cran-mime r-cran-miniui r-cran-minqa r-cran-modelmetrics r-cran-modelr r-cran-nlme r-cran-nloptr r-cran-nnet r-cran-numderiv r-cran-openssl r-cran-otel r-cran-parallelly r-cran-pbkrtest r-cran-pheatmap r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plotly r-cran-plyr r-cran-polynom r-cran-proc r-cran-prodlim r-cran-progressr r-cran-promises r-cran-proxy r-cran-purrr r-cran-quantreg r-cran-r6 r-cran-rappdirs r-cran-rbibutils r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcurl r-cran-rdpack r-cran-recipes r-cran-reformulas r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart r-cran-rstatix r-cran-s7 r-cran-sass r-cran-scales r-cran-shape r-cran-shiny r-cran-shinyjs r-cran-snow r-cran-sourcetools r-cran-sparsem r-cran-sparsevctrs r-cran-squarem r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-timechange r-cran-timedate r-cran-tinytex r-cran-tzdb r-cran-urca r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml r-cran-zoo r-pkg-team-core-architecture readline-common salmon samtools sensible-utils sgml-base shared-mime-info snakemake sphinx-common systemd systemd-sysv trim-galore ucf unicode-data unzip user-session-migration x11-common xdg-utils xkb-data xml-core xz-utils zip WARNING: The following essential packages will be removed. This should NOT be done unless you know exactly what you are doing! systemd-sysv systemd (due to systemd-sysv) 0 upgraded, 0 newly installed, 699 to remove and 0 not upgraded. After this operation, 2698 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 101867 files and directories currently installed.) Removing pigx-rnaseq (0.1.1-4) ... Removing fastqc (0.12.1+dfsg-4) ... Removing default-jre (2:1.25-77) ... Removing openjdk-25-jre:amd64 (25.0.5~7ea-2) ... Removing libgtk-3-0t64:amd64 (3.24.52-3) ... Removing adwaita-icon-theme (51.0-1) ... Removing libatk-bridge2.0-0t64:amd64 (2.62.1-1) ... Removing libatk1.0-0t64:amd64 (2.62.1-1) ... Removing at-spi2-common (2.62.1-1) ... Removing r-cran-gprofiler2 (0.2.4+dfsg-1) ... Removing r-cran-plotly (4.12.1+dfsg-1) ... Removing r-cran-colourpicker (1.3.0+dfsg-2) ... Removing r-cran-shinyjs (2.1.1-1) ... Removing r-bioc-rtracklayer (1.72.0+ds-1+b1) ... Removing r-cran-restfulr (0.0.17-1) ... Removing r-cran-rcurl (1.98-1.20+dfsg-1) ... Removing gtk-update-icon-cache (4.24.1+ds-1) ... Removing libhtsjdk-java (5.0.0+dfsg-2) ... Removing libjson-java (3.2.0+dfsg-2) ... Removing junit4 (4.13.2-6) ... Removing default-jre-headless (2:1.25-77) ... Removing openjdk-25-jre-headless:amd64 (25.0.5~7ea-2) ... Removing ca-certificates-java (20260311) ... Removing snakemake (7.32.4-12) ... Removing python3-pulp (2.7.0+dfsg-5) ... 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Removing r-cran-rpart (4.1.27-1) ... Removing r-cran-pbkrtest (0.5.5-2) ... Removing r-cran-doby (4.7.2-2) ... Removing r-cran-forecast (9.0.2-2) ... Removing r-cran-urca (1.3-4-1) ... Removing multiqc (1.21+dfsg-4) ... Removing python3-matplotlib (3.10.9+dfsg1-2) ... Removing python3-pil.imagetk:amd64 (12.3.0-1+b1) ... Removing python3-pil:amd64 (12.3.0-1+b1) ... Removing python3-tk (3.14.7-3) ... Removing python3.14-tk (3.14.8-1) ... Removing python-matplotlib-data (3.10.9+dfsg1-2) ... Removing r-cran-dt (0.34.0+dfsg-1) ... Removing r-cran-crosstalk (1.2.2+dfsg-1) ... Removing fonts-lyx (2.5.3-2) ... Removing python3-git (3.2.1-1) ... Removing hicolor-icon-theme (0.18-2) ... Removing hisat2 (2.2.1-5+b4) ... Removing java-common (0.77) ... Removing libavif16:amd64 (1.4.2-1) ... Removing libgav1-2:amd64 (0.20.0-2+b2) ... Removing libabsl20260526:amd64 (20260526.0-2+b1) ... Removing libaom3:amd64 (3.14.1-1) ... Removing libslf4j-java (1.7.36-1) ... 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Removing libsnappy1v5:amd64 (1.3.1-3) ... Removing libsvtav1enc4:amd64 (4.2.0+dfsg-1) ... dpkg: warning: overriding problem because --force enabled: dpkg: warning: this is a protected package; it should not be removed Removing systemd-sysv (262.1-1) ... Removing systemd (262.1-1) ... Removing libsystemd-shared:amd64 (262.1-1) ... Removing libtbbmalloc2:amd64 (2023.1.0-3) ... Removing libvulkan1:amd64 (1.4.363.0-1) ... Removing libwayland-egl1:amd64 (1.26.0-1) ... Removing libxxf86vm1:amd64 (1:1.1.4-2+b1) ... Removing libxtst6:amd64 (2:1.2.5-1+b2) ... Removing libx11-xcb1:amd64 (2:1.8.13-1) ... Removing libxcb-xfixes0:amd64 (1.17.0-2+b2) ... Removing libxcb-sync1:amd64 (1.17.0-2+b2) ... Removing libxcb-dri3-0:amd64 (1.17.0-2+b2) ... Removing libxcb-glx0:amd64 (1.17.0-2+b2) ... Removing libxcb-present0:amd64 (1.17.0-2+b2) ... Removing libxcb-randr0:amd64 (1.17.0-2+b2) ... Removing libxcomposite1:amd64 (1:0.4.6-1+b2) ... Removing libxcursor1:amd64 (1:1.2.3-1+b2) ... Removing libxdamage1:amd64 (1:1.1.7-1+b1) ... Removing libxerces2-java (2.12.2-1) ... Removing libxfixes3:amd64 (1:6.0.0-2+b5) ... Removing libxi6:amd64 (2:1.8.3-1) ... Removing libxinerama1:amd64 (2:1.1.4-3+b5) ... Removing libxkbcommon0:amd64 (1.13.1-1) ... Removing libxml-commons-external-java (1.4.01-6) ... Removing libxml-commons-resolver1.1-java (1.2-11) ... Removing r-cran-xml (3.99-0.25-1) ... Removing libxrandr2:amd64 (2:1.5.4-1+b4) ... Removing libxres1:amd64 (2:1.2.1-2) ... Removing libxshmfence1:amd64 (1.3.3-1+b2) ... Removing python3-pyaml-env (1.2.1-2) ... Removing python3-yaml (6.0.3-1+b1) ... Removing libz3-4:amd64 (4.13.3-1.1) ... Removing python3-cutadapt (4.7-2+b5) ... Removing python3-dnaio (1.2.4-1+b2) ... Removing python3-xopen (1.7.0-4) ... Removing pigz (2.8-2) ... Removing ncbi-vdb-data (3.4.1+dfsg-1) ... Removing pci.ids (0.0~2026.09.23-1) ... Removing python3-babel (2.18.0+git2026-08-12-3) ... Removing python-babel-localedata (2.18.0+git2026-08-12-3) ... 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Removing r-cran-sparsevctrs (0.3.6-2) ... Removing r-cran-clock (0.7.4-2) ... Removing r-cran-lava (1.9.3+dfsg-1) ... Removing r-cran-future.apply (1.20.2+dfsg-1) ... Removing r-cran-future (1.75.0+dfsg-1) ... Removing r-cran-globals (0.19.1-2) ... Removing r-cran-foreach (1.5.2-1) ... Removing r-cran-codetools (0.2-20-1) ... Removing r-cran-colorspace (2.1-4+dfsg-1) ... Removing r-cran-corrplot (0.95-2) ... Removing r-cran-cowplot (1.2.0+dfsg-1) ... Removing r-cran-tzdb (0.5.0-1) ... Removing r-cran-lubridate (1.9.5+dfsg-2) ... Removing r-cran-timechange (0.4.0-1) ... Removing r-cran-crayon (1.5.3-2) ... Removing r-cran-modelmetrics (1.2.2.2-2) ... Removing r-cran-deriv (4.3.5-1) ... Removing r-cran-diagram (1.6.5-3) ... Removing r-cran-progressr (1.0.0-1) ... Removing r-cran-pheatmap (1.0.13-1) ... Removing r-cran-ggsci (5.2.0-1) ... Removing r-cran-futile.logger (1.4.9-2) ... Removing r-cran-lambda.r (1.2.4-3) ... Removing r-cran-formatr (1.14-3) ... Removing r-cran-formula (1.2-6-1) ... Removing r-cran-futile.options (1.0.1-4) ... Removing r-cran-ggsignif (0.6.4-2) ... Removing r-cran-ggrepel (0.9.8-1) ... Removing r-cran-ggplot2 (4.0.3+dfsg-1) ... Removing r-cran-pillar (1.11.1+dfsg-1) ... Removing r-cran-gridextra (2.3.1-1) ... Removing r-cran-gtable (0.3.6+dfsg-2) ... Removing r-cran-isoband (0.3.0-1) ... Removing r-cran-iterators (1.0.14-1) ... Removing r-cran-kernsmooth (2.23-27-1) ... Removing r-cran-lmtest (0.9.40-1) ... Removing r-cran-zoo (1.9-1-1) ... Removing r-cran-nlme (3.1.171-1) ... Removing r-cran-lazyeval (0.2.3-1) ... Removing r-cran-purrr (1.2.2-1) ... Removing r-cran-listenv (1.1.0+dfsg-1) ... Removing r-cran-proc (1.19.1-1) ... Removing r-cran-locfit (1.5-9.12-2) ... Removing r-cran-mass (7.3-66-1) ... Removing r-cran-matrixmodels (0.5-4-2) ... Removing r-cran-matrixstats (1.5.0-3) ... Removing r-cran-microbenchmark (1.5.0-1) ... Removing r-cran-minqa (1.2.8-1) ... Removing r-cran-nnet (7.3-21-1) ... Removing r-cran-numderiv (2016.8-1.1-3) ... Removing r-cran-parallelly (1.47.0-1) ... Removing r-cran-pkgconfig (2.0.3-3) ... Removing r-cran-plyr (1.8.9-2) ... Removing r-cran-polynom (1.4-1+dfsg-2) ... Removing r-cran-proxy (0.4-29-1) ... Removing r-cran-reformulas (0.4.4-1) ... Removing r-cran-rdpack (2.6.6-1) ... Removing r-cran-rbibutils (2.4.1-3) ... Removing r-cran-rjson (0.2.23-1+b1) ... Removing r-cran-s7 (0.2.2-1) ... Removing r-cran-shape (1.4.6.1-2) ... Removing r-cran-sparsem (1.84-2-1+b1) ... Removing r-cran-squarem (2026.1-1) ... Removing r-cran-statmod (1.5.2-1) ... Removing r-cran-sys (3.4.3-3) ... Removing r-cran-timedate (4052.112-2) ... Removing r-cran-utf8 (1.2.6-2) ... Removing xml-core (0.21) ... Removing sgml-base (1.31+nmu1) ... Removing xkb-data (2.48-1) ... Removing r-cran-htmlwidgets (1.6.4+dfsg-2) ... Removing r-cran-rmarkdown (2.31+dfsg-1) ... Removing r-cran-shiny (1.13.0+dfsg-1) ... Removing r-cran-bslib (0.10.0+dfsg-1) ... Removing r-cran-sass (0.4.10+dfsg-3) ... Removing r-cran-survival (3.8-12-1) ... Removing r-cran-matrix (1.7-6-1) ... Removing fonts-font-awesome (7.3.0+dfsg-1) ... Removing fonts-font-awesome-legacy (6-4) ... Removing r-cran-knitr (1.51+dfsg-2) ... Removing libjs-mathjax (2.7.9+dfsg-1) ... Removing fonts-mathjax (2.7.9+dfsg-1) ... Removing r-cran-tinytex (0.61-1) ... Removing r-cran-highr (0.12+dfsg-1) ... Removing r-cran-xfun (0.61+dfsg-1) ... Removing git (1:2.55.0-1) ... Removing git-man (1:2.55.0-1) ... Removing libjs-bootstrap4 (4.6.2+dfsg-3) ... Removing libjs-popper.js (1.16.1+ds-7) ... Removing javascript-common (12+nmu1) ... Removing libcommons-logging-java (1.3.0-2) ... Removing libcommons-parent-java (56-1) ... Removing libapache-pom-java (33-2) ... Removing libcurl4-gnutls:amd64 (8.23.0-1) ... Removing liberror-perl (0.17030-1) ... Removing libngtcp2-crypto-gnutls8:amd64 (1.24.0-1) ... Removing libgnutls30t64:amd64 (3.8.13-1) ... Removing r-cran-data.table (1.18.6.1+dfsg-1) ... Removing libjs-d3 (3.5.17-4) ... Removing libjs-es5-shim (4.6.7-2) ... Removing libjs-highlight.js (10.7.3+dfsg-6) ... Removing r-cran-jquerylib (0.1.4+dfsg-6) ... Removing libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Removing libjs-jquery-datatables (1.11.5+dfsg-2) ... Removing libjs-jquery-ui (1.14.2+dfsg-1) ... Removing libjs-json (0~20221030+~1.0.8-1) ... Removing libjs-microplugin.js (0.0.3+dfsg-2) ... Removing libjs-modernizr (3.13.0-0.1) ... Removing libjs-prettify (2015.12.04+dfsg-3) ... Removing libjs-sifter.js (0.6.0+dfsg-3) ... Removing libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Removing pandoc (3.11-1) ... Removing liblua5.4-0:amd64 (5.4.9-1) ... Removing libnuma1:amd64 (2.0.19-1+b2) ... Removing libp11-kit0:amd64 (0.26.5-1) ... Removing libtasn1-6:amd64 (4.21.0-2+b1) ... Removing r-cran-httpuv (1.6.17+dfsg-1) ... Removing r-cran-fs (2.1.0+dfsg-1) ... Removing libuv1t64:amd64 (1.53.0-1) ... Removing libyaml-0-2:amd64 (0.2.5-2+b1) ... Removing node-bootstrap-sass (3.4.3-2) ... Removing node-html5shiv (3.7.3+dfsg-5) ... Removing node-normalize.css (8.0.1-5.1) ... Removing pandoc-data (3.11-1) ... Removing r-bioc-biocgenerics (0.58.1-2) ... Removing r-cran-fontawesome (0.5.3-2) ... Removing r-cran-htmltools (0.5.9-2) ... Removing r-cran-base64enc (0.1-6-2) ... Removing r-cran-memoise (2.0.1-2) ... Removing r-cran-cachem (1.1.0-3) ... Removing r-cran-vctrs (0.7.3-2) ... Removing r-cran-commonmark (2.0.0-3) ... Removing r-cran-cpp11 (0.5.5-1) ... Removing r-cran-digest (0.6.39-1) ... Removing r-cran-evaluate (1.0.5-3) ... Removing r-cran-scales (1.4.0-1) ... Removing r-cran-farver (2.1.2-3) ... Removing r-cran-promises (1.5.0+dfsg-3) ... Removing r-cran-fastmap (1.2.0-3) ... Removing r-cran-generics (0.1.4-1) ... Removing r-cran-glue (1.8.1-2) ... Removing r-cran-jsonlite (2.0.0+dfsg-2) ... Removing r-cran-labeling (0.4.3-2) ... Removing r-cran-later (1.4.8+dfsg-3) ... Removing r-cran-lattice (0.23-1-1) ... Removing r-cran-lifecycle (1.0.5+dfsg-1) ... Removing r-cran-rcpp (1.1.2-1) ... Removing r-cran-littler (0.3.23-1) ... Removing r-cran-magrittr (2.0.5-1) ... Removing r-cran-mime (0.13-2) ... Removing r-cran-otel (0.2.0-1) ... Removing r-cran-pkgkitten (0.2.4-1) ... Removing r-cran-r6 (2.6.1-2) ... Removing r-cran-rappdirs (0.3.4-2) ... Removing r-cran-rcolorbrewer (1.1-3-2) ... Removing r-cran-rlang (1.3.0-1) ... Removing r-cran-sourcetools (0.1.7-2-2) ... Removing r-cran-viridislite (0.4.3-1) ... Removing r-cran-withr (3.0.3+dfsg-1) ... Removing r-cran-xtable (1:1.8-8-1) ... Removing r-cran-yaml (2.3.12-2) ... Removing r-pkg-team-core-architecture (20260707) ... Removing build-essential (12.12) ... Removing g++ (4:16.1.0-3) ... Removing gcc (4:16.1.0-3) ... Removing dpkg-dev (1.23.11) ... Removing g++-x86-64-linux-gnu (4:16.1.0-3) ... Removing gcc-x86-64-linux-gnu (4:16.1.0-3) ... Removing bzip2 (1.0.8-6+b2) ... Removing cpp (4:16.1.0-3) ... Removing cpp-x86-64-linux-gnu (4:16.1.0-3) ... Removing libjs-bootstrap (3.4.1+dfsg-7) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-7) ... Removing g++-16 (16.2.0-3) ... Removing g++-16-x86-64-linux-gnu (16.2.0-3) ... Removing libdpkg-perl (1.23.11) ... Removing perl (5.42.3-1) ... Removing libperl5.42:amd64 (5.42.3-1) ... Removing libgdbm-compat4t64:amd64 (1.26-1+b2) ... Removing libgdbm6t64:amd64 (1.26-1+b2) ... Removing libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Removing make (4.4.1-3) ... Removing patch (2.8-2) ... Removing perl-modules-5.42 (5.42.3-1) ... Removing r-cran-cli (3.6.6-1) ... Removing xz-utils (5.8.4-1) ... Removing gcc-16 (16.2.0-3) ... Removing binutils (2.47-6) ... Removing libgprofng0:amd64 (2.47-6) ... Removing gcc-16-x86-64-linux-gnu (16.2.0-3) ... Removing binutils-x86-64-linux-gnu (2.47-6) ... Removing libctf0:amd64 (2.47-6) ... Removing libbinutils:amd64 (2.47-6) ... Removing binutils-common:amd64 (2.47-6) ... Removing cpp-16 (16.2.0-3) ... Removing cpp-16-x86-64-linux-gnu (16.2.0-3) ... Removing r-base-core (4.6.1-9) ... Removing libtk8.6:amd64 (8.6.18-1) ... Removing libxft2:amd64 (2.3.6-1+b5) ... Removing libcc1-0:amd64 (16.2.0-3) ... Removing libtirpc3t64:amd64 (1.3.7+ds-1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libcurl4t64:amd64 (8.23.0-1) ... Removing libgssapi-krb5-2:amd64 (1.22.1-3) ... Removing libkrb5-3:amd64 (1.22.1-3) ... Removing libcom-err2:amd64 (1.47.4-1+b2) ... Removing libctf-nobfd0:amd64 (2.47-6) ... Removing libtiff6:amd64 (4.7.2-1) ... Removing libdeflate0:amd64 (1.25-1) ... Removing libxt6t64:amd64 (1:1.2.1-1.3+b2) ... Removing libsm6:amd64 (2:1.2.6-1+b2) ... Removing libice6:amd64 (2:1.1.1-1+b2) ... Removing libicu78:amd64 (78.3-2) ... Removing libpsl5t64:amd64 (0.23.3-1) ... Removing libidn2-0:amd64 (2.3.8-5) ... Removing libisl23:amd64 (0.28-1) ... Removing libjansson4:amd64 (2.15.1-1) ... Removing libjbig0:amd64 (2.1-6.1+b3) ... Removing libjpeg62-turbo:amd64 (1:3.1.3-4) ... Removing libk5crypto3:amd64 (1.22.1-3) ... Removing libkeyutils1:amd64 (1.6.3-6+b2) ... Removing libkrb5support0:amd64 (1.22.1-3) ... Removing libldap2:amd64 (2.6.14+dfsg-2) ... Removing liblerc4:amd64 (4.2.0+ds-1) ... Removing libmpc3:amd64 (1.3.1-3) ... Removing libmpfr6:amd64 (4.2.2-3) ... Removing ucf (3.0056) ... Removing procps (2:4.0.7-1) ... Removing libnghttp2-14:amd64 (1.70.0-1) ... Removing libnghttp3-9:amd64 (1.17.0-1) ... Removing libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Removing libngtcp2-16:amd64 (1.24.0-1) ... Removing libpaper-utils (2.2.5-0.4) ... Removing libpaper2:amd64 (2.2.5-0.4) ... Removing libproc2-1:amd64 (2:4.0.7-1) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-12) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-12) ... Removing libsframe3:amd64 (2.47-6) ... Removing libwebp7:amd64 (1.6.0-0.1) ... Removing libssh2-1t64:amd64 (1.11.1-6) ... Removing libtcl8.6:amd64 (8.6.18+dfsg-1) ... Removing libtext-wrapi18n-perl (0.06-11) ... Removing libtext-charwidth-perl:amd64 (0.04-12+b1) ... Removing libtirpc-common (1.3.7+ds-1) ... Removing libunistring5:amd64 (1.4.2-1) ... Removing libxss1:amd64 (1:1.2.3-1+b4) ... Removing sensible-utils (0.0.26) ... Removing unzip (6.0-31) ... Removing x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.2.1-2) ... Removing zip (3.0-16) ... Removing ca-certificates (20260816) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing openssl (3.6.5-1) ... Removing libboost1.92-dev:amd64 (1.92.0-4) ... Removing libboost-regex1.92-dev:amd64 (1.92.0-4) ... Removing libstdc++-16-dev:amd64 (16.2.0-3) ... Removing libgcc-16-dev:amd64 (16.2.0-3) ... Removing libasan8:amd64 (16.2.0-3) ... Removing python3-ufolib2 (0.18.1+dfsg1-2) ... Removing libboost-regex1.92.0:amd64 (1.92.0-4) ... Removing libc6-dev:amd64 (2.43-7) ... Removing libc-dev-bin (2.43-7) ... Removing libgomp1:amd64 (16.2.0-3) ... Removing libhwasan0:amd64 (16.2.0-3) ... Removing libitm1:amd64 (16.2.0-3) ... Removing liblsan0:amd64 (16.2.0-3) ... Removing libquadmath0:amd64 (16.2.0-3) ... Removing libtsan2:amd64 (16.2.0-3) ... Removing libubsan1:amd64 (16.2.0-3) ... Removing linux-libc-dev (7.2.11-1) ... Removing python3-attr (26.1.0-1) ... Removing glycin-loaders (2.2.3+ds-1) ... Removing librsvg2-2:amd64 (2.63.2+dfsg-1) ... Removing bubblewrap (0.13.1-1) ... Removing libpangocairo-1.0-0:amd64 (1.58.2-1) ... Removing libpangoft2-1.0-0:amd64 (1.58.2-1) ... Removing libpango-1.0-0:amd64 (1.58.2-1) ... Removing fontconfig (2.17.1-5) ... Removing python3-fonttools (4.65.0-1) ... Removing python3-scipy (1.17.1-5+b1) ... Removing libheif1:amd64 (1.23.6-2) ... Removing libheif-plugin-libde265:amd64 (1.23.6-2) ... Removing libjxl0.11:amd64 (0.11.2-5.1) ... Removing libcairo-gobject2:amd64 (1.18.4-3+b1) ... Removing libcairo2:amd64 (1.18.4-3+b1) ... Removing libcap2:amd64 (1:2.78-1+b1) ... Removing libthai0:amd64 (0.1.30-3) ... Removing libdatrie1:amd64 (0.2.14-2) ... Removing libde265-0:amd64 (1.1.3-1+b1) ... Removing python3-uharfbuzz (0.53.3-1+b1) ... Removing libharfbuzz-subset0:amd64 (12.3.2-2+b2) ... Removing libharfbuzz0b:amd64 (12.3.2-2+b2) ... Removing libfribidi0:amd64 (1.0.16-5+b1) ... Removing python3-lxml:amd64 (6.1.3-1) ... Removing libxslt1.1:amd64 (1.1.45-0.1) ... Removing libgcrypt20:amd64 (1.12.4-2) ... Removing python3-numpy (1:2.4.6+ds-5) ... Removing liblapack3:amd64 (3.12.1-8) ... Removing libgfortran5:amd64 (16.2.0-3) ... Removing libgpg-error0:amd64 (1.61-5) ... Removing libgraphite2-3:amd64 (1.3.15-2) ... Removing libhwy1t64:amd64 (1.3.0-5.1) ... Removing liblcms2-2:amd64 (2.19.1-1) ... Removing libpixman-1-0:amd64 (0.46.4-1+b2) ... Removing libqhull-r8.0:amd64 (2020.2-9) ... Removing libsharpyuv0:amd64 (1.6.0-0.1) ... Removing libthai-data (0.1.30-3) ... Removing libxcb-render0:amd64 (1.17.0-2+b2) ... Removing libxcb-shm0:amd64 (1.17.0-2+b2) ... Removing libxext6:amd64 (2:1.3.4-1+b4) ... Removing libxrender1:amd64 (1:0.9.12-1+b2) ... Removing python3-zopfli (0.4.3-2) ... Removing libzopfli1 (1.0.3-3) ... Removing python3-brotli (1.2.0-4+b1) ... Removing python3-decorator (5.3.1-1) ... Removing python3-lz4 (4.4.5+dfsg-1+b1) ... Removing python3-sympy (1.14.0-6) ... Removing python3-mpmath (1.4.1-4) ... Removing python3-numpy-dev:amd64 (1:2.4.6+ds-5) ... Removing unicode-data (17.0.0-2) ... Removing libgdk-pixbuf-2.0-0:amd64 (2.44.8+dfsg-1) ... Removing glycin-thumbnailers (2.2.3+ds-1) ... Removing libglycin-2-0:amd64 (2.2.3+ds-1) ... Removing libfontconfig1:amd64 (2.17.1-5) ... Removing fontconfig-config (2.17.1-5) ... Removing fonts-dejavu-core (2.37-9) ... Removing fonts-dejavu-mono (2.37-9) ... Removing shared-mime-info (2.4-5+b3) ... Removing libglib2.0-0t64:amd64 (2.90.1-2) ... Removing libatomic1:amd64 (16.2.0-3) ... Removing libblas3:amd64 (3.12.1-8) ... Removing libheif-plugin-dav1d:amd64 (1.23.6-2) ... Removing libdav1d7:amd64 (1.5.4-1) ... Removing python3 (3.14.7-3) ... Removing python3.14 (3.14.8-1) ... Removing python3-minimal (3.14.7-3) ... Removing python3.14-minimal (3.14.8-1) ... Removing libexpat1:amd64 (2.9.0-1) ... Removing libpython3-stdlib:amd64 (3.14.7-3) ... Removing libpython3.14-stdlib:amd64 (3.14.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.8.0-2) ... Removing libfreetype6:amd64 (2.14.3+dfsg-3) ... Removing libgdk-pixbuf2.0-common (2.44.8+dfsg-1) ... Removing libncursesw6:amd64 (6.6+20260608-2) ... Removing libpng16-16t64:amd64 (1.6.59-1) ... Removing libpython3.14-minimal:amd64 (3.14.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.53.4-2) ... Removing libx11-6:amd64 (2:1.8.13-1) ... Removing libx11-data (2:1.8.13-1) ... Removing libxcb1:amd64 (1.17.0-2+b2) ... Removing libxau6:amd64 (1:1.0.11-1+b2) ... Removing libxdmcp6:amd64 (1:1.1.5-2+b1) ... Removing libxml2-16:amd64 (2.15.4+dfsg-1) ... Removing media-types (14.0.0) ... Removing netbase (6.6) ... Removing readline-common (8.3-4) ... Removing libbrotli1:amd64 (1.2.0-4+b1) ... Processing triggers for libc-bin (2.43-7) ... 7m39.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'apt-get', 'remove', '--allow-remove-essential', 'adwaita-icon-theme', 'at-spi2-common', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bubblewrap', 'build-essential', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'coinor-cbc', 'coinor-libcbc3.1:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'cutadapt', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre', 'default-jre-headless', 'docutils-common', 'dpkg-dev', 'fastp', 'fastqc', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-font-awesome-legacy', 'fonts-glyphicons-halflings', 'fonts-lyx', 'fonts-mathjax', 'g++-', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'git', 'git-man', 'glycin-loaders', 'glycin-thumbnailers', 'gsettings-desktop-schemas', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'hisat2', 'java-common', 'javascript-common', 'junit4', 'libabsl20260526:amd64', 'libaom3:amd64', 'libapache-pom-java', 'libapparmor1:amd64', 'libasan8:amd64', 'libasound2-data', 'libasound2t64:amd64', 'libatk-bridge2.0-0t64:amd64', 'libatk1.0-0t64:amd64', 'libatomic1:amd64', 'libatspi2.0-0t64:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif16:amd64', 'libbigwig0t64:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost-filesystem1.92.0:amd64', 'libboost-iostreams1.92.0:amd64', 'libboost-program-options1.92.0:amd64', 'libboost-regex1.92-dev:amd64', 'libboost-regex1.92.0:amd64', 'libboost1.92-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcap2:amd64', 'libcc1-0:amd64', 'libcloudproviders0:amd64', 'libcolord2:amd64', 'libcom-err2:amd64', 'libcommons-beanutils-java', 'libcommons-codec-java', 'libcommons-collections3-java', 'libcommons-collections4-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcups2t64:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libepoxy0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libezmorph-java', 'libffi8:amd64', 'libfindbin-libs-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgbm1:amd64', 'libgcc-16-dev:amd64', 'libgcrypt20:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglib2.0-0t64:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libglycin-2-0:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0t64:amd64', 'libgtk-3-common', 'libhamcrest-java', 'libharfbuzz-subset0:amd64', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhtsjdk-java', 'libhwasan0:amd64', 'libhwloc15:amd64', 'libhwy1t64:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libisal2:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjaxen-java', 'libjbig0:amd64', 'libjbzip2-java', 'libjemalloc2:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-datatables-extensions', 'libjs-jquery-metadata', 'libjs-jquery-selectize.js', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-sphinxdoc', 'libjs-twitter-bootstrap-datepicker', 'libjson-java', 'libjson-perl', 'libjxl0.11:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'libllvm22:amd64', 'liblog4j1.2-java', 'liblsan0:amd64', 'liblua5.4-0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnlopt1:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-1:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.8:amd64', 'libreadline8t64:amd64', 'librhino-java', 'librsvg2-2:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libslf4j-java', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstaden-read14t64:amd64', 'libstdc++-16-dev:amd64', 'libsvtav1enc4:amd64', 'libsystemd-shared:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxerces2-java', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxml2-16:amd64', 'libxom-java', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxres1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'libzopfli1', 'linux-libc-dev', 'make', 'media-types', 'megadepth', 'mesa-libgallium:amd64', 'multiqc', 'ncbi-vdb-data', 'netbase', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openjdk-25-jre:amd64', 'openjdk-25-jre-headless:amd64', 'openssl', 'pandoc', 'pandoc-data', 'patch', 'pci.ids', 'perl', 'perl-modules-5.42', 'pigz', 'procps', 'python-babel-localedata', 'python-matplotlib-data', 'python3', 'python3-alabaster', 'python3-attr', 'python3-babel', 'python3-brotli', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-coloredlogs', 'python3-colormath', 'python3-configargparse', 'python3-connection-pool', 'python3-contourpy', 'python3-cutadapt', 'python3-cycler', 'python3-dateutil', 'python3-datrie', 'python3-decorator', 'python3-deeptools', 'python3-deeptoolsintervals', 'python3-defusedxml', 'python3-dnaio', 'python3-docutils', 'python3-dpath', 'python3-fastjsonschema', 'python3-fonttools', 'python3-git', 'python3-gitdb', 'python3-htseq', 'python3-humanfriendly', 'python3-humanize', 'python3-idna', 'python3-imagesize', 'python3-jinja2', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-jupyter-core', 'python3-kiwisolver', 'python3-linkify-it', 'python3-lxml:amd64', 'python3-lz4', 'python3-lzstring', 'python3-markdown', 'python3-markdown-it', 'python3-markupsafe', 'python3-matplotlib', 'python3-mdurl', 'python3-minimal', 'python3-mpmath', 'python3-nbformat', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-numpydoc', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-plac', 'python3-platformdirs', 'python3-plotly', 'python3-psutil', 'python3-pulp', 'python3-py2bit', 'python3-pyaml-env', 'python3-pybigwig', 'python3-pygments', 'python3-pyparsing', 'python3-pysam', 'python3-pytz', 'python3-referencing', 'python3-requests', 'python3-retry', 'python3-rich', 'python3-rich-click', 'python3-roman-numerals', 'python3-rpds-py', 'python3-scipy', 'python3-smart-open', 'python3-smmap', 'python3-snowballstemmer', 'python3-spectra', 'python3-sphinx', 'python3-stopit', 'python3-sympy', 'python3-tabulate', 'python3-tenacity', 'python3-throttler', 'python3-tk', 'python3-toposort', 'python3-traitlets', 'python3-uc-micro', 'python3-ufolib2', 'python3-uharfbuzz', 'python3-urllib3', 'python3-wrapt', 'python3-xopen', 'python3-yaml', 'python3-yte', 'python3-zopfli', 'python3.14', 'python3.14-minimal', 'python3.14-tk', 'r-base-core', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocio', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-cigarillo', 'r-bioc-delayedarray', 'r-bioc-deseq2', 'r-bioc-genomeinfodb', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-seqinfo', 'r-bioc-sparsearray', 'r-bioc-summarizedexperiment', 'r-bioc-tximport', 'r-bioc-ucsc.utils', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-askpass', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-bh', 'r-cran-bitops', 'r-cran-boot', 'r-cran-broom', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-car', 'r-cran-cardata', 'r-cran-caret', 'r-cran-class', 'r-cran-cli', 'r-cran-clock', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-colourpicker', 'r-cran-commonmark', 'r-cran-conquer', 'r-cran-corrplot', 'r-cran-cowplot', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-crosstalk', 'r-cran-curl', 'r-cran-data.table', 'r-cran-deriv', 'r-cran-diagram', 'r-cran-digest', 'r-cran-doby', 'r-cran-dplyr', 'r-cran-dt', 'r-cran-e1071', 'r-cran-evaluate', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-fontawesome', 'r-cran-foreach', 'r-cran-forecast', 'r-cran-formatr', 'r-cran-formula', 'r-cran-fracdiff', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-future', 'r-cran-future.apply', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-ggpubr', 'r-cran-ggrepel', 'r-cran-ggsci', 'r-cran-ggsignif', 'r-cran-globals', 'r-cran-glue', 'r-cran-gower', 'r-cran-gprofiler2', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-hardhat', 'r-cran-highr', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-ipred', 'r-cran-isoband', 'r-cran-iterators', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lava', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-listenv', 'r-cran-littler', 'r-cran-lme4', 'r-cran-lmtest', 'r-cran-locfit', 'r-cran-lubridate', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixmodels', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-microbenchmark', 'r-cran-mime', 'r-cran-miniui', 'r-cran-minqa', 'r-cran-modelmetrics', 'r-cran-modelr', 'r-cran-nlme', 'r-cran-nloptr', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-openssl', 'r-cran-otel', 'r-cran-parallelly', 'r-cran-pbkrtest', 'r-cran-pheatmap', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plotly', 'r-cran-plyr', 'r-cran-polynom', 'r-cran-proc', 'r-cran-prodlim', 'r-cran-progressr', 'r-cran-promises', 'r-cran-proxy', 'r-cran-purrr', 'r-cran-quantreg', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rbibutils', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-rcppeigen', 'r-cran-rcurl', 'r-cran-rdpack', 'r-cran-recipes', 'r-cran-reformulas', 'r-cran-reshape2', 'r-cran-restfulr', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rpart', 'r-cran-rstatix', 'r-cran-s7', 'r-cran-sass', 'r-cran-scales', 'r-cran-shape', 'r-cran-shiny', 'r-cran-shinyjs', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-sparsem', 'r-cran-sparsevctrs', 'r-cran-squarem', 'r-cran-statmod', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-timechange', 'r-cran-timedate', 'r-cran-tinytex', 'r-cran-tzdb', 'r-cran-urca', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xtable', 'r-cran-yaml', 'r-cran-zoo', 'r-pkg-team-core-architecture', 'readline-common', 'salmon', 'samtools', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'snakemake', 'sphinx-common', 'systemd', 'systemd-sysv', 'trim-galore', 'ucf', 'unicode-data', 'unzip', 'user-session-migration', 'x11-common', 'xdg-utils', 'xkb-data', 'xml-core', 'xz-utils', 'zip', 'pigx-rnaseq'] 7m39.9s INFO: Running scripts post_remove 7m39.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/post_remove_exceptions'] 7m40.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/post_remove_exceptions'] 7m40.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'dpkg', '--purge', 'adwaita-icon-theme', 'at-spi2-common', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bubblewrap', 'build-essential', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'coinor-cbc', 'coinor-libcbc3.1:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'cutadapt', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre', 'default-jre-headless', 'docutils-common', 'dpkg-dev', 'fastp', 'fastqc', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-font-awesome-legacy', 'fonts-glyphicons-halflings', 'fonts-lyx', 'fonts-mathjax', 'g++', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'git', 'git-man', 'glycin-loaders', 'glycin-thumbnailers', 'gsettings-desktop-schemas', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'hisat2', 'java-common', 'javascript-common', 'junit4', 'libabsl20260526:amd64', 'libaom3:amd64', 'libapache-pom-java', 'libapparmor1:amd64', 'libasan8:amd64', 'libasound2-data', 'libasound2t64:amd64', 'libatk-bridge2.0-0t64:amd64', 'libatk1.0-0t64:amd64', 'libatomic1:amd64', 'libatspi2.0-0t64:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif16:amd64', 'libbigwig0t64:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost-filesystem1.92.0:amd64', 'libboost-iostreams1.92.0:amd64', 'libboost-program-options1.92.0:amd64', 'libboost-regex1.92-dev:amd64', 'libboost-regex1.92.0:amd64', 'libboost1.92-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcap2:amd64', 'libcc1-0:amd64', 'libcloudproviders0:amd64', 'libcolord2:amd64', 'libcom-err2:amd64', 'libcommons-beanutils-java', 'libcommons-codec-java', 'libcommons-collections3-java', 'libcommons-collections4-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcups2t64:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4-gnutls:amd64', 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'python3-rich', 'python3-rich-click', 'python3-roman-numerals', 'python3-rpds-py', 'python3-scipy', 'python3-smart-open', 'python3-smmap', 'python3-snowballstemmer', 'python3-spectra', 'python3-sphinx', 'python3-stopit', 'python3-sympy', 'python3-tabulate', 'python3-tenacity', 'python3-throttler', 'python3-tk', 'python3-toposort', 'python3-traitlets', 'python3-uc-micro', 'python3-ufolib2', 'python3-uharfbuzz', 'python3-urllib3', 'python3-wrapt', 'python3-xopen', 'python3-yaml', 'python3-yte', 'python3-zopfli', 'python3.14', 'python3.14-minimal', 'python3.14-tk', 'r-base-core', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocio', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-cigarillo', 'r-bioc-delayedarray', 'r-bioc-deseq2', 'r-bioc-genomeinfodb', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-seqinfo', 'r-bioc-sparsearray', 'r-bioc-summarizedexperiment', 'r-bioc-tximport', 'r-bioc-ucsc.utils', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-askpass', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-bh', 'r-cran-bitops', 'r-cran-boot', 'r-cran-broom', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-car', 'r-cran-cardata', 'r-cran-caret', 'r-cran-class', 'r-cran-cli', 'r-cran-clock', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-colourpicker', 'r-cran-commonmark', 'r-cran-conquer', 'r-cran-corrplot', 'r-cran-cowplot', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-crosstalk', 'r-cran-curl', 'r-cran-data.table', 'r-cran-deriv', 'r-cran-diagram', 'r-cran-digest', 'r-cran-doby', 'r-cran-dplyr', 'r-cran-dt', 'r-cran-e1071', 'r-cran-evaluate', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-fontawesome', 'r-cran-foreach', 'r-cran-forecast', 'r-cran-formatr', 'r-cran-formula', 'r-cran-fracdiff', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-future', 'r-cran-future.apply', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-ggpubr', 'r-cran-ggrepel', 'r-cran-ggsci', 'r-cran-ggsignif', 'r-cran-globals', 'r-cran-glue', 'r-cran-gower', 'r-cran-gprofiler2', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-hardhat', 'r-cran-highr', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-ipred', 'r-cran-isoband', 'r-cran-iterators', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lava', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-listenv', 'r-cran-littler', 'r-cran-lme4', 'r-cran-lmtest', 'r-cran-locfit', 'r-cran-lubridate', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixmodels', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-microbenchmark', 'r-cran-mime', 'r-cran-miniui', 'r-cran-minqa', 'r-cran-modelmetrics', 'r-cran-modelr', 'r-cran-nlme', 'r-cran-nloptr', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-openssl', 'r-cran-otel', 'r-cran-parallelly', 'r-cran-pbkrtest', 'r-cran-pheatmap', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plotly', 'r-cran-plyr', 'r-cran-polynom', 'r-cran-proc', 'r-cran-prodlim', 'r-cran-progressr', 'r-cran-promises', 'r-cran-proxy', 'r-cran-purrr', 'r-cran-quantreg', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rbibutils', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-rcppeigen', 'r-cran-rcurl', 'r-cran-rdpack', 'r-cran-recipes', 'r-cran-reformulas', 'r-cran-reshape2', 'r-cran-restfulr', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rpart', 'r-cran-rstatix', 'r-cran-s7', 'r-cran-sass', 'r-cran-scales', 'r-cran-shape', 'r-cran-shiny', 'r-cran-shinyjs', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-sparsem', 'r-cran-sparsevctrs', 'r-cran-squarem', 'r-cran-statmod', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-timechange', 'r-cran-timedate', 'r-cran-tinytex', 'r-cran-tzdb', 'r-cran-urca', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xtable', 'r-cran-yaml', 'r-cran-zoo', 'r-pkg-team-core-architecture', 'readline-common', 'salmon', 'samtools', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'snakemake', 'sphinx-common', 'systemd', 'systemd-sysv', 'trim-galore', 'ucf', 'unicode-data', 'unzip', 'user-session-migration', 'x11-common', 'xdg-utils', 'xkb-data', 'xml-core', 'xz-utils', 'zip'] 7m41.0s DUMP: (Reading database ... 5101 files and directories currently installed.) 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libfreetype6 which is not installed dpkg: warning: ignoring request to remove libfribidi0 which is not installed dpkg: warning: ignoring request to remove libgav1-2 which is not installed dpkg: warning: ignoring request to remove libgbm1 which is not installed dpkg: warning: ignoring request to remove libgcc-16-dev which is not installed dpkg: warning: ignoring request to remove libgcrypt20 which is not installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which is not installed dpkg: warning: ignoring request to remove libgdbm6t64 which is not installed Purging configuration files for libgdk-pixbuf-2.0-0:amd64 (2.44.8+dfsg-1) ... dpkg: warning: ignoring request to remove libgdk-pixbuf2.0-common which is not installed dpkg: warning: ignoring request to remove libgfortran5 which is not installed dpkg: warning: ignoring request to remove libgif7 which is not installed dpkg: warning: ignoring request to remove libgl1 which is not installed Purging configuration files for 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Purging configuration files for libglib2.0-0t64:amd64 (2.90.1-2) ... dpkg: warning: ignoring request to remove libglvnd0 which is not installed dpkg: warning: ignoring request to remove libglx-mesa0 which is not installed dpkg: warning: ignoring request to remove libglx0 which is not installed dpkg: warning: ignoring request to remove libglycin-2-0 which is not installed dpkg: warning: ignoring request to remove libgnutls30t64 which is not installed dpkg: warning: ignoring request to remove libgomp1 which is not installed dpkg: warning: ignoring request to remove libgpg-error0 which is not installed dpkg: warning: ignoring request to remove libgprofng0 which is not installed dpkg: warning: ignoring request to remove libgraphite2-3 which is not installed Purging configuration files for libgssapi-krb5-2:amd64 (1.22.1-3) ... Purging configuration files for libgtk-3-0t64:amd64 (3.24.52-3) ... Purging configuration files for libgtk-3-common (3.24.52-3) ... dpkg: warning: ignoring request to remove libhamcrest-java which is not installed dpkg: warning: ignoring request to remove libharfbuzz-subset0 which is not installed dpkg: warning: ignoring request to remove libharfbuzz0b which is not installed dpkg: warning: ignoring request to remove libheif-plugin-dav1d which is not installed dpkg: warning: ignoring request to remove libheif-plugin-libde265 which is not installed dpkg: warning: ignoring request to remove libheif1 which is not installed dpkg: warning: ignoring request to remove libhts3t64 which is not installed dpkg: warning: ignoring request to remove libhtscodecs2 which is not installed dpkg: warning: ignoring request to remove libhtsjdk-java which is not installed dpkg: warning: ignoring request to remove libhwasan0 which is not installed dpkg: warning: ignoring request to remove libhwloc15 which is not installed dpkg: warning: ignoring request to remove libhwy1t64 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installed dpkg: warning: ignoring request to remove libjs-json which is not installed dpkg: warning: ignoring request to remove libjs-mathjax which is not installed dpkg: warning: ignoring request to remove libjs-microplugin.js which is not installed dpkg: warning: ignoring request to remove libjs-modernizr which is not installed Purging configuration files for libjs-popper.js (1.16.1+ds-7) ... dpkg: warning: ignoring request to remove libjs-prettify which is not installed dpkg: warning: ignoring request to remove libjs-sifter.js which is not installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which is not installed dpkg: warning: ignoring request to remove libjs-twitter-bootstrap-datepicker which is not installed dpkg: warning: ignoring request to remove libjson-java which is not installed dpkg: warning: ignoring request to remove libjson-perl which is not installed dpkg: warning: ignoring request to remove libjxl0.11 which is not installed dpkg: warning: ignoring request to remove libk5crypto3 which is not installed dpkg: warning: ignoring request to remove libkeyutils1 which is not installed dpkg: warning: ignoring request to remove libkrb5-3 which is not installed dpkg: warning: ignoring request to remove libkrb5support0 which is not installed dpkg: warning: ignoring request to remove liblapack3 which is not installed dpkg: warning: ignoring request to remove liblcms2-2 which is not installed dpkg: warning: ignoring request to remove libldap2 which is not installed dpkg: warning: ignoring request to remove liblerc4 which is not installed dpkg: warning: ignoring request to remove libllvm22 which is not installed dpkg: warning: ignoring request to remove liblog4j1.2-java which is not installed dpkg: warning: ignoring request to remove liblsan0 which is not installed dpkg: warning: ignoring request to remove liblua5.4-0 which is not installed dpkg: warning: ignoring request to remove libmbedcrypto16 which is not installed dpkg: warning: ignoring request to remove libmbedtls21 which is not installed dpkg: warning: ignoring request to remove libmbedx509-7 which is not installed dpkg: warning: ignoring request to remove libmpc3 which is not installed dpkg: warning: ignoring request to remove libmpfr6 which is not installed dpkg: warning: ignoring request to remove libncbi-ngs3 which is not installed dpkg: warning: ignoring request to remove libncbi-vdb3 which is not installed dpkg: warning: ignoring request to remove libncurses6 which is not installed dpkg: warning: ignoring request to remove libncursesw6 which is not installed dpkg: warning: ignoring request to remove libnghttp2-14 which is not installed dpkg: warning: ignoring request to remove libnghttp3-9 which is not installed dpkg: warning: ignoring request to remove libngs-java which is not installed dpkg: warning: ignoring request to remove libngs-jni which is not installed dpkg: warning: ignoring request to remove libngtcp2-16 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-gnutls8 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-ossl0 which is not installed dpkg: warning: ignoring request to remove libnlopt1 which is not installed dpkg: warning: ignoring request to remove libnspr4 which is not installed dpkg: warning: ignoring request to remove libnss3 which is not installed dpkg: warning: ignoring request to remove libnuma1 which is not installed dpkg: warning: ignoring request to remove libopenjp2-7 which is not installed dpkg: warning: ignoring request to remove libp11-kit0 which is not installed dpkg: warning: ignoring request to remove libpam-systemd which is not installed dpkg: warning: ignoring request to remove libpango-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpaper-utils which is not installed Purging configuration files for libpaper2:amd64 (2.2.5-0.4) ... dpkg: warning: ignoring request to remove libpciaccess0 which is not installed dpkg: warning: ignoring request to remove libpcsclite1 which is not installed dpkg: warning: ignoring request to remove libperl5.42 which is not installed dpkg: warning: ignoring request to remove libpixman-1-0 which is not installed dpkg: warning: ignoring request to remove libpng16-16t64 which is not installed dpkg: warning: ignoring request to remove libproc2-1 which is not installed dpkg: warning: ignoring request to remove libpsl5t64 which is not installed dpkg: warning: ignoring request to remove libpython3-stdlib which is not installed dpkg: warning: ignoring request to remove libpython3.14 which is not installed Purging configuration files for libpython3.14-minimal:amd64 (3.14.8-1) ... dpkg: warning: ignoring request to remove libpython3.14-stdlib which is not installed dpkg: warning: ignoring request to remove libqhull-r8.0 which is not installed dpkg: warning: ignoring request to remove libquadmath0 which is not installed dpkg: warning: ignoring request to remove libraqm0 which is not installed dpkg: warning: ignoring request to remove librav1e0.8 which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove librhino-java which is not installed dpkg: warning: ignoring request to remove librsvg2-2 which is not installed dpkg: warning: ignoring request to remove libsasl2-2 which is not installed dpkg: warning: ignoring request to remove libsasl2-modules-db which is not installed Purging configuration files for libsensors-config (1:3.6.2-2) ... dpkg: warning: ignoring request to remove libsensors5 which is not installed dpkg: warning: ignoring request to remove libsframe3 which is not installed dpkg: warning: ignoring request to remove libsharpyuv0 which is not installed dpkg: warning: ignoring request to remove libslf4j-java which is not installed dpkg: warning: ignoring request to remove libsm6 which is not installed dpkg: warning: ignoring request to remove libsnappy-java which is not installed dpkg: warning: ignoring request to remove libsnappy-jni which is not installed dpkg: warning: ignoring request to remove libsnappy1v5 which is not installed dpkg: warning: ignoring request to remove libsqlite3-0 which is not installed dpkg: warning: ignoring request to remove libssh2-1t64 which is not installed dpkg: warning: ignoring request to remove libstaden-read14t64 which is not installed dpkg: warning: ignoring request to remove libstdc++-16-dev which is not installed dpkg: warning: ignoring request to remove libsvtav1enc4 which is not installed dpkg: warning: ignoring request to remove libsystemd-shared which is not installed dpkg: warning: ignoring request to remove libtasn1-6 which is not installed dpkg: warning: ignoring request to remove libtbb12 which is not installed dpkg: warning: ignoring request to remove libtbbbind-2-5 which is not installed dpkg: warning: ignoring request to remove libtbbmalloc2 which is not installed dpkg: warning: ignoring request to remove libtcl8.6 which is not installed dpkg: warning: ignoring request to remove libtext-charwidth-perl which is not installed dpkg: warning: ignoring request to remove libtext-wrapi18n-perl which is not installed dpkg: warning: ignoring request to remove libthai-data which is not installed dpkg: warning: ignoring request to remove libthai0 which is not installed dpkg: warning: ignoring request to remove libtiff6 which is not installed Purging configuration files for libtirpc-common (1.3.7+ds-1) ... Purging configuration files for libtirpc3t64:amd64 (1.3.7+ds-1) ... dpkg: warning: ignoring request to remove libtk8.6 which is not installed dpkg: warning: ignoring request to remove libtsan2 which is not installed dpkg: warning: ignoring request to remove libubsan1 which is not installed dpkg: warning: ignoring request to remove libunistring5 which is not installed dpkg: warning: ignoring request to remove libuv1t64 which is not installed dpkg: warning: ignoring request to remove libvulkan1 which is not installed dpkg: warning: ignoring request to remove libwayland-client0 which is not installed dpkg: warning: ignoring request to remove libwayland-cursor0 which is not installed dpkg: warning: ignoring request to remove libwayland-egl1 which is not installed dpkg: warning: ignoring request to remove libwebp7 which is not installed dpkg: warning: ignoring request to remove libwebpdemux2 which is not installed dpkg: warning: ignoring request to remove libwebpmux3 which is not installed dpkg: warning: ignoring request to remove libx11-6 which is not installed dpkg: warning: ignoring request to remove libx11-data which is not installed dpkg: warning: ignoring request to remove libx11-xcb1 which is not installed dpkg: warning: ignoring request to remove libxau6 which is not installed dpkg: warning: ignoring request to remove libxcb-dri3-0 which is not installed dpkg: warning: ignoring request to remove libxcb-glx0 which is not installed dpkg: warning: ignoring request to remove libxcb-present0 which is not installed dpkg: warning: ignoring request to remove libxcb-randr0 which is not installed dpkg: warning: ignoring request to remove libxcb-render0 which is not installed dpkg: warning: ignoring request to remove libxcb-shm0 which is not installed dpkg: warning: ignoring request to remove libxcb-sync1 which is not installed dpkg: warning: ignoring request to remove libxcb-xfixes0 which is not installed dpkg: warning: ignoring request to remove libxcb1 which is not installed dpkg: warning: ignoring request to remove libxcomposite1 which is not installed dpkg: warning: ignoring request to remove libxcursor1 which is not installed dpkg: warning: ignoring request to remove libxdamage1 which is not installed dpkg: warning: ignoring request to remove libxdmcp6 which is not installed dpkg: warning: ignoring request to remove libxerces2-java which is not installed dpkg: warning: ignoring request to remove libxext6 which is not installed dpkg: warning: ignoring request to remove libxfixes3 which is not installed dpkg: warning: ignoring request to remove libxft2 which is not installed dpkg: warning: ignoring request to remove libxi6 which is not installed dpkg: warning: ignoring request to remove libxinerama1 which is not installed dpkg: warning: ignoring request to remove libxkbcommon0 which is not installed dpkg: warning: ignoring request to remove libxml-commons-external-java which is not installed Purging configuration files for libxml-commons-resolver1.1-java (1.2-11) ... dpkg: warning: while removing libxml-commons-resolver1.1-java, directory '/etc/xml' not empty so not removed dpkg: warning: ignoring request to remove libxml2-16 which is not installed dpkg: warning: ignoring request to remove libxom-java which is not installed dpkg: warning: ignoring request to remove libxrandr2 which is not installed dpkg: warning: ignoring request to remove libxrender1 which is not installed dpkg: warning: ignoring request to remove libxres1 which is not installed dpkg: warning: ignoring request to remove libxshmfence1 which is not installed dpkg: warning: ignoring request to remove libxslt1.1 which is not installed dpkg: warning: ignoring request to remove libxss1 which is not installed dpkg: warning: ignoring request to remove libxt6t64 which is not installed dpkg: warning: ignoring request to remove libxtst6 which is not installed dpkg: warning: ignoring request to remove libxxf86vm1 which is not installed dpkg: warning: ignoring request to remove libyaml-0-2 which is not installed dpkg: warning: ignoring request to remove libyuv0 which is not installed dpkg: warning: ignoring request to remove libz3-4 which is not installed dpkg: warning: ignoring request to remove libzopfli1 which is not installed dpkg: warning: ignoring request to remove linux-libc-dev which is not installed dpkg: warning: ignoring request to remove make which is not installed Purging configuration files for media-types (14.0.0) ... dpkg: warning: ignoring request to remove megadepth which is not installed dpkg: warning: ignoring request to remove mesa-libgallium which is not installed dpkg: warning: ignoring request to remove multiqc which is not installed Purging configuration files for ncbi-vdb-data (3.4.1+dfsg-1) ... Purging configuration files for netbase (6.6) ... dpkg: warning: ignoring request to remove node-bootstrap-sass which is not installed dpkg: warning: ignoring request to remove node-html5shiv which is not installed dpkg: warning: ignoring request to remove node-normalize.css which is not installed dpkg: warning: ignoring request to remove openjdk-25-jre which is not installed Purging configuration files for openjdk-25-jre-headless:amd64 (25.0.5~7ea-2) ... Purging configuration files for openssl (3.6.5-1) ... dpkg: warning: ignoring request to remove pandoc which is not installed dpkg: warning: ignoring request to remove pandoc-data which is not installed dpkg: warning: ignoring request to remove patch which is not installed dpkg: warning: ignoring request to remove pci.ids which is not installed Purging configuration files for perl (5.42.3-1) ... dpkg: warning: ignoring request to remove perl-modules-5.42 which is not installed dpkg: warning: ignoring request to remove pigz which is not installed Purging configuration files for procps (2:4.0.7-1) ... dpkg: warning: ignoring request to remove python-babel-localedata which is not installed Purging configuration files for python-matplotlib-data (3.10.9+dfsg1-2) ... Purging configuration files for python3 (3.14.7-3) ... dpkg: warning: ignoring request to remove python3-alabaster which is not installed dpkg: warning: ignoring request to remove python3-attr which is not installed dpkg: warning: ignoring request to remove python3-babel which is not installed dpkg: warning: ignoring request to remove python3-brotli which is not installed dpkg: warning: ignoring request to remove python3-certifi which is not installed dpkg: warning: ignoring request to remove python3-chardet which is not installed dpkg: warning: ignoring request to remove python3-charset-normalizer which is not installed dpkg: warning: ignoring request to remove python3-click which is not installed dpkg: warning: ignoring request to remove python3-coloredlogs which is not installed dpkg: warning: ignoring request to remove python3-colormath which is not installed dpkg: warning: ignoring request to remove python3-configargparse which is not installed dpkg: warning: ignoring request to remove python3-connection-pool which is not installed dpkg: warning: ignoring request to remove python3-contourpy which is not installed dpkg: warning: ignoring request to remove python3-cutadapt which is not installed dpkg: warning: ignoring request to remove python3-cycler which is not installed dpkg: warning: ignoring request to remove python3-dateutil which is not installed dpkg: warning: ignoring request to remove python3-datrie which is not installed dpkg: warning: ignoring request to remove python3-decorator which is not installed dpkg: warning: ignoring request to remove python3-deeptools which is not installed dpkg: warning: ignoring request to remove python3-deeptoolsintervals which is not installed dpkg: warning: ignoring request to remove python3-defusedxml which is not installed dpkg: warning: ignoring request to remove python3-dnaio which is not installed dpkg: warning: ignoring request to remove python3-docutils which is not installed dpkg: warning: ignoring request to remove python3-dpath which is not installed dpkg: warning: ignoring request to remove python3-fastjsonschema which is not installed dpkg: warning: ignoring request to remove python3-fonttools which is not installed dpkg: warning: ignoring request to remove python3-git which is not installed dpkg: warning: ignoring request to remove python3-gitdb which is not installed dpkg: warning: ignoring request to remove python3-htseq which is not installed dpkg: warning: ignoring request to remove python3-humanfriendly which is not installed dpkg: warning: ignoring request to remove python3-humanize which is not installed dpkg: warning: ignoring request to remove python3-idna which is not installed dpkg: warning: ignoring request to remove python3-imagesize which is not installed dpkg: warning: ignoring request to remove python3-jinja2 which is not installed Purging configuration files for python3-jsonschema (4.26.0-3) ... dpkg: warning: ignoring request to remove python3-jsonschema-specifications which is not installed dpkg: warning: ignoring request to remove python3-jupyter-core which is not installed dpkg: warning: ignoring request to remove python3-kiwisolver which is not installed dpkg: warning: ignoring request to remove python3-linkify-it which is not installed dpkg: warning: ignoring request to remove python3-lxml which is not installed dpkg: warning: ignoring request to remove python3-lz4 which is not installed dpkg: warning: ignoring request to remove python3-lzstring which is not installed dpkg: warning: ignoring request to remove python3-markdown which is not installed dpkg: warning: ignoring request to remove python3-markdown-it which is not installed dpkg: warning: ignoring request to remove python3-markupsafe which is not installed dpkg: warning: ignoring request to remove python3-matplotlib which is not installed dpkg: warning: ignoring request to remove python3-mdurl which is not installed dpkg: warning: ignoring request to remove python3-minimal which is not installed dpkg: warning: ignoring request to remove python3-mpmath which is not installed dpkg: warning: ignoring request to remove python3-nbformat which is not installed dpkg: warning: ignoring request to remove python3-networkx which is not installed Purging configuration files for python3-numpy (1:2.4.6+ds-5) ... dpkg: warning: ignoring request to remove python3-numpy-dev which is not installed dpkg: warning: ignoring request to remove python3-numpydoc which is not installed dpkg: warning: ignoring request to remove python3-packaging which is not installed dpkg: warning: ignoring request to remove python3-pil which is not installed dpkg: warning: ignoring request to remove python3-pil.imagetk which is not installed dpkg: warning: ignoring request to remove python3-plac which is not installed dpkg: warning: ignoring request to remove python3-platformdirs which is not installed dpkg: warning: ignoring request to remove python3-plotly which is not installed dpkg: warning: ignoring request to remove python3-psutil which is not installed dpkg: warning: ignoring request to remove python3-pulp which is not installed dpkg: warning: ignoring request to remove python3-py2bit which is not installed dpkg: warning: ignoring request to remove python3-pyaml-env which is not installed dpkg: warning: ignoring request to remove python3-pybigwig which is not installed dpkg: warning: ignoring request to remove python3-pygments which is not installed dpkg: warning: ignoring request to remove python3-pyparsing which is not installed dpkg: warning: ignoring request to remove python3-pysam which is not installed dpkg: warning: ignoring request to remove python3-pytz which is not installed dpkg: warning: ignoring request to remove python3-referencing which is not installed dpkg: warning: ignoring request to remove python3-requests which is not installed dpkg: warning: ignoring request to remove python3-retry which is not installed dpkg: warning: ignoring request to remove python3-rich which is not installed dpkg: warning: ignoring request to remove python3-rich-click which is not installed dpkg: warning: ignoring request to remove python3-roman-numerals which is not installed dpkg: warning: ignoring request to remove python3-rpds-py which is not installed dpkg: warning: ignoring request to remove python3-scipy which is not installed dpkg: warning: ignoring request to remove python3-smart-open which is not installed dpkg: warning: ignoring request to remove python3-smmap which is not installed dpkg: warning: ignoring request to remove python3-snowballstemmer which is not installed dpkg: warning: ignoring request to remove python3-spectra which is not installed dpkg: warning: ignoring request to remove python3-sphinx which is not installed dpkg: warning: ignoring request to remove python3-stopit which is not installed Purging configuration files for python3-sympy (1.14.0-6) ... dpkg: warning: ignoring request to remove python3-tabulate which is not installed dpkg: warning: ignoring request to remove python3-tenacity which is not installed dpkg: warning: ignoring request to remove python3-throttler which is not installed dpkg: warning: ignoring request to remove python3-tk which is not installed dpkg: warning: ignoring request to remove python3-toposort which is not installed dpkg: warning: ignoring request to remove python3-traitlets which is not installed dpkg: warning: ignoring request to remove python3-uc-micro which is not installed dpkg: warning: ignoring request to remove python3-ufolib2 which is not installed dpkg: warning: ignoring request to remove python3-uharfbuzz which is not installed dpkg: warning: ignoring request to remove python3-urllib3 which is not installed dpkg: warning: ignoring request to remove python3-wrapt which is not installed dpkg: warning: ignoring request to remove python3-xopen which is not installed dpkg: warning: ignoring request to remove python3-yaml which is not installed dpkg: warning: ignoring request to remove python3-yte which is not installed dpkg: warning: ignoring request to remove python3-zopfli which is not installed dpkg: warning: ignoring request to remove python3.14 which is not installed Purging configuration files for python3.14-minimal (3.14.8-1) ... dpkg: warning: ignoring request to remove python3.14-tk which is not installed Purging configuration files for r-base-core (4.6.1-9) ... dpkg: warning: ignoring request to remove r-bioc-biobase which is not installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which is not installed dpkg: warning: ignoring request to remove r-bioc-biocio which is not installed dpkg: warning: ignoring request to remove r-bioc-biocparallel which is not installed dpkg: warning: ignoring request to remove r-bioc-biostrings which is not installed dpkg: warning: ignoring request to remove r-bioc-cigarillo which is not installed dpkg: warning: ignoring request to remove r-bioc-delayedarray which is not installed dpkg: warning: ignoring request to remove r-bioc-deseq2 which is not installed dpkg: warning: ignoring request to remove r-bioc-genomeinfodb which is not installed dpkg: warning: ignoring request to remove r-bioc-genomicalignments which is not installed dpkg: warning: ignoring request to remove r-bioc-genomicranges which is not installed dpkg: warning: ignoring request to remove r-bioc-iranges which is not installed dpkg: warning: ignoring request to remove r-bioc-matrixgenerics which is not installed dpkg: warning: ignoring request to remove r-bioc-rhtslib which is not installed dpkg: warning: ignoring request to remove r-bioc-rsamtools which is not installed dpkg: warning: ignoring request to remove r-bioc-rtracklayer which is not installed dpkg: warning: ignoring request to remove r-bioc-s4arrays which is not installed dpkg: warning: ignoring request to remove r-bioc-s4vectors which is not installed dpkg: warning: ignoring request to remove r-bioc-seqinfo which is not installed dpkg: warning: ignoring request to remove r-bioc-sparsearray which is not installed dpkg: warning: ignoring request to remove r-bioc-summarizedexperiment which is not installed dpkg: warning: ignoring request to remove r-bioc-tximport which is not installed dpkg: warning: ignoring request to remove r-bioc-ucsc.utils which is not installed dpkg: warning: ignoring request to remove r-bioc-xvector which is not installed dpkg: warning: ignoring request to remove r-cran-abind which is not installed dpkg: warning: ignoring request to remove r-cran-askpass which is not installed dpkg: warning: ignoring request to remove r-cran-backports which is not installed dpkg: warning: ignoring request to remove r-cran-base64enc which is not installed dpkg: warning: ignoring request to remove r-cran-bh which is not installed dpkg: warning: ignoring request to remove r-cran-bitops which is not installed dpkg: warning: ignoring request to remove r-cran-boot which is not installed dpkg: warning: ignoring request to remove r-cran-broom which is not installed dpkg: warning: ignoring request to remove r-cran-bslib which is not installed dpkg: warning: ignoring request to remove r-cran-cachem which is not installed dpkg: warning: ignoring request to remove r-cran-car which is not installed dpkg: warning: ignoring request to remove r-cran-cardata which is not installed dpkg: warning: ignoring request to remove r-cran-caret which is not installed dpkg: warning: ignoring request to remove r-cran-class which is not installed dpkg: warning: ignoring request to remove r-cran-cli which is not installed dpkg: warning: ignoring request to remove r-cran-clock which is not installed dpkg: warning: ignoring request to remove r-cran-codetools which is not installed dpkg: warning: ignoring request to remove r-cran-colorspace which is not installed dpkg: warning: ignoring request to remove r-cran-colourpicker which is not installed dpkg: warning: ignoring request to remove r-cran-commonmark which is not installed dpkg: warning: ignoring request to remove r-cran-conquer which is not installed dpkg: warning: ignoring request to remove r-cran-corrplot which is not installed dpkg: warning: ignoring request to remove r-cran-cowplot which is not installed dpkg: warning: ignoring request to remove r-cran-cpp11 which is not installed dpkg: warning: ignoring request to remove r-cran-crayon which is not installed dpkg: warning: ignoring request to remove r-cran-crosstalk which is not installed dpkg: warning: ignoring request to remove r-cran-curl which is not installed dpkg: warning: ignoring request to remove r-cran-data.table which is not installed dpkg: warning: ignoring request to remove r-cran-deriv which is not installed dpkg: warning: ignoring request to remove r-cran-diagram which is not installed dpkg: warning: ignoring request to remove r-cran-digest which is not installed dpkg: warning: ignoring request to remove r-cran-doby which is not installed dpkg: warning: ignoring request to remove r-cran-dplyr which is not installed dpkg: warning: ignoring request to remove r-cran-dt which is not installed dpkg: warning: ignoring request to remove r-cran-e1071 which is not installed dpkg: warning: ignoring request to remove r-cran-evaluate which is not installed dpkg: warning: ignoring request to remove r-cran-farver which is not installed dpkg: warning: ignoring request to remove r-cran-fastmap which is not installed dpkg: warning: ignoring request to remove r-cran-fontawesome which is not installed dpkg: warning: ignoring request to remove r-cran-foreach which is not installed dpkg: warning: ignoring request to remove r-cran-forecast which is not installed dpkg: warning: ignoring request to remove r-cran-formatr which is not installed dpkg: warning: ignoring request to remove r-cran-formula which is not installed dpkg: warning: ignoring request to remove r-cran-fracdiff which is not installed dpkg: warning: ignoring request to remove r-cran-fs which is not installed dpkg: warning: ignoring request to remove r-cran-futile.logger which is not installed dpkg: warning: ignoring request to remove r-cran-futile.options which is not installed dpkg: warning: ignoring request to remove r-cran-future which is not installed dpkg: warning: ignoring request to remove r-cran-future.apply which is not installed dpkg: warning: ignoring request to remove r-cran-generics which is not installed dpkg: warning: ignoring request to remove r-cran-ggplot2 which is not installed dpkg: warning: ignoring request to remove r-cran-ggpubr which is not installed dpkg: warning: ignoring request to remove r-cran-ggrepel which is not installed dpkg: warning: ignoring request to remove r-cran-ggsci which is not installed dpkg: warning: ignoring request to remove r-cran-ggsignif which is not installed dpkg: warning: ignoring request to remove r-cran-globals which is not installed dpkg: warning: ignoring request to remove r-cran-glue which is not installed dpkg: warning: ignoring request to remove r-cran-gower which is not installed dpkg: warning: ignoring request to remove r-cran-gprofiler2 which is not installed dpkg: warning: ignoring request to remove r-cran-gridextra which is not installed dpkg: warning: ignoring request to remove r-cran-gtable which is not installed dpkg: warning: ignoring request to remove r-cran-hardhat which is not installed dpkg: warning: ignoring request to remove r-cran-highr which is not installed dpkg: warning: ignoring request to remove r-cran-htmltools which is not installed dpkg: warning: ignoring request to remove r-cran-htmlwidgets which is not installed dpkg: warning: ignoring request to remove r-cran-httpuv which is not installed dpkg: warning: ignoring request to remove r-cran-httr which is not installed dpkg: warning: ignoring request to remove r-cran-ipred which is not installed dpkg: warning: ignoring request to remove r-cran-isoband which is not installed dpkg: warning: ignoring request to remove r-cran-iterators which is not installed dpkg: warning: ignoring request to remove r-cran-jquerylib which is not installed dpkg: warning: ignoring request to remove r-cran-jsonlite which is not installed dpkg: warning: ignoring request to remove r-cran-kernsmooth which is not installed dpkg: warning: ignoring request to remove r-cran-knitr which is not installed dpkg: warning: ignoring request to remove r-cran-labeling which is not installed dpkg: warning: ignoring request to remove r-cran-lambda.r which is not installed dpkg: warning: ignoring request to remove r-cran-later which is not installed dpkg: warning: ignoring request to remove r-cran-lattice which is not installed dpkg: warning: ignoring request to remove r-cran-lava which is not installed dpkg: warning: ignoring request to remove r-cran-lazyeval which is not installed dpkg: warning: ignoring request to remove r-cran-lifecycle which is not installed dpkg: warning: ignoring request to remove r-cran-listenv which is not installed dpkg: warning: ignoring request to remove r-cran-littler which is not installed dpkg: warning: ignoring request to remove r-cran-lme4 which is not installed dpkg: warning: ignoring request to remove r-cran-lmtest which is not installed dpkg: warning: ignoring request to remove r-cran-locfit which is not installed dpkg: warning: ignoring request to remove r-cran-lubridate which is not installed dpkg: warning: ignoring request to remove r-cran-magrittr which is not installed dpkg: warning: ignoring request to remove r-cran-mass which is not installed dpkg: warning: ignoring request to remove r-cran-matrix which is not installed dpkg: warning: ignoring request to remove r-cran-matrixmodels which is not installed dpkg: warning: ignoring request to remove r-cran-matrixstats which is not installed dpkg: warning: ignoring request to remove r-cran-memoise which is not installed dpkg: warning: ignoring request to remove r-cran-mgcv which is not installed dpkg: warning: ignoring request to remove r-cran-microbenchmark which is not installed dpkg: warning: ignoring request to remove r-cran-mime which is not installed dpkg: warning: ignoring request to remove r-cran-miniui which is not installed dpkg: warning: ignoring request to remove r-cran-minqa which is not installed dpkg: warning: ignoring request to remove r-cran-modelmetrics which is not installed dpkg: warning: ignoring request to remove r-cran-modelr which is not installed dpkg: warning: ignoring request to remove r-cran-nlme which is not installed dpkg: warning: ignoring request to remove r-cran-nloptr which is not installed dpkg: warning: ignoring request to remove r-cran-nnet which is not installed dpkg: warning: ignoring request to remove r-cran-numderiv which is not installed dpkg: warning: ignoring request to remove r-cran-openssl which is not installed dpkg: warning: ignoring request to remove r-cran-otel which is not installed dpkg: warning: ignoring request to remove r-cran-parallelly which is not installed dpkg: warning: ignoring request to remove r-cran-pbkrtest which is not installed dpkg: warning: ignoring request to remove r-cran-pheatmap which is not installed dpkg: warning: ignoring request to remove r-cran-pillar which is not installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which is not installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which is not installed dpkg: warning: ignoring request to remove r-cran-plotly which is not installed dpkg: warning: ignoring request to remove r-cran-plyr which is not installed dpkg: warning: ignoring request to remove r-cran-polynom which is not installed dpkg: warning: ignoring request to remove r-cran-proc which is not installed dpkg: warning: ignoring request to remove r-cran-prodlim which is not installed dpkg: warning: ignoring request to remove r-cran-progressr which is not installed dpkg: warning: ignoring request to remove r-cran-promises which is not installed dpkg: warning: ignoring request to remove r-cran-proxy which is not installed dpkg: warning: ignoring request to remove r-cran-purrr which is not installed dpkg: warning: ignoring request to remove r-cran-quantreg which is not installed dpkg: warning: ignoring request to remove r-cran-r6 which is not installed dpkg: warning: ignoring request to remove r-cran-rappdirs which is not installed dpkg: warning: ignoring request to remove r-cran-rbibutils which is not installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which is not installed dpkg: warning: ignoring request to remove r-cran-rcpp which is not installed dpkg: warning: ignoring request to remove r-cran-rcpparmadillo which is not installed dpkg: warning: ignoring request to remove r-cran-rcppeigen which is not installed dpkg: warning: ignoring request to remove r-cran-rcurl which is not installed dpkg: warning: ignoring request to remove r-cran-rdpack which is not installed dpkg: warning: ignoring request to remove r-cran-recipes which is not installed dpkg: warning: ignoring request to remove r-cran-reformulas which is not installed dpkg: warning: ignoring request to remove r-cran-reshape2 which is not installed dpkg: warning: ignoring request to remove r-cran-restfulr which is not installed dpkg: warning: ignoring request to remove r-cran-rjson which is not installed dpkg: warning: ignoring request to remove r-cran-rlang which is not installed dpkg: warning: ignoring request to remove r-cran-rmarkdown which is not installed dpkg: warning: ignoring request to remove r-cran-rpart which is not installed dpkg: warning: ignoring request to remove r-cran-rstatix which is not installed dpkg: warning: ignoring request to remove r-cran-s7 which is not installed dpkg: warning: ignoring request to remove r-cran-sass which is not installed dpkg: warning: ignoring request to remove r-cran-scales which is not installed dpkg: warning: ignoring request to remove r-cran-shape which is not installed dpkg: warning: ignoring request to remove r-cran-shiny which is not installed dpkg: warning: ignoring request to remove r-cran-shinyjs which is not installed dpkg: warning: ignoring request to remove r-cran-snow which is not installed dpkg: warning: ignoring request to remove r-cran-sourcetools which is not installed dpkg: warning: ignoring request to remove r-cran-sparsem which is not installed dpkg: warning: ignoring request to remove r-cran-sparsevctrs which is not installed dpkg: warning: ignoring request to remove r-cran-squarem which is not installed dpkg: warning: ignoring request to remove r-cran-statmod which is not installed dpkg: warning: ignoring request to remove r-cran-stringi which is not installed dpkg: warning: ignoring request to remove r-cran-stringr which is not installed dpkg: warning: ignoring request to remove r-cran-survival which is not installed dpkg: warning: ignoring request to remove r-cran-sys which is not installed dpkg: warning: ignoring request to remove r-cran-tibble which is not installed dpkg: warning: ignoring request to remove r-cran-tidyr which is not installed dpkg: warning: ignoring request to remove r-cran-tidyselect which is not installed dpkg: warning: ignoring request to remove r-cran-timechange which is not installed dpkg: warning: ignoring request to remove r-cran-timedate which is not installed dpkg: warning: ignoring request to remove r-cran-tinytex which is not installed dpkg: warning: ignoring request to remove r-cran-tzdb which is not installed dpkg: warning: ignoring request to remove r-cran-urca which is not installed dpkg: warning: ignoring request to remove r-cran-utf8 which is not installed dpkg: warning: ignoring request to remove r-cran-vctrs which is not installed dpkg: warning: ignoring request to remove r-cran-viridislite which is not installed dpkg: warning: ignoring request to remove r-cran-withr which is not installed dpkg: warning: ignoring request to remove r-cran-xfun which is not installed dpkg: warning: ignoring request to remove r-cran-xml which is not installed dpkg: warning: ignoring request to remove r-cran-xtable which is not installed dpkg: warning: ignoring request to remove r-cran-yaml which is not installed dpkg: warning: ignoring request to remove r-cran-zoo which is not installed dpkg: warning: ignoring request to remove r-pkg-team-core-architecture which is not installed Purging configuration files for readline-common (8.3-4) ... dpkg: warning: ignoring request to remove salmon which is not installed dpkg: warning: ignoring request to remove samtools which is not installed dpkg: warning: ignoring request to remove sensible-utils which is not installed Purging configuration files for sgml-base (1.31+nmu1) ... Purging configuration files for shared-mime-info (2.4-5+b3) ... dpkg: warning: ignoring request to remove snakemake which is not installed dpkg: warning: ignoring request to remove sphinx-common which is not installed Purging configuration files for systemd (262.1-1) ... dpkg: warning: ignoring request to remove systemd-sysv which is not installed dpkg: warning: ignoring request to remove trim-galore which is not installed Purging configuration files for ucf (3.0056) ... dpkg: warning: ignoring request to remove unicode-data which is not installed dpkg: warning: ignoring request to remove unzip which is not installed Purging configuration files for user-session-migration (0.5.2) ... Purging configuration files for x11-common (1:7.7+26) ... dpkg: warning: ignoring request to remove xdg-utils which is not installed Purging configuration files for xkb-data (2.48-1) ... Purging configuration files for xml-core (0.21) ... dpkg: warning: ignoring request to remove xz-utils which is not installed dpkg: warning: ignoring request to remove zip which is not installed 7m41.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'dpkg', '--purge', 'adwaita-icon-theme', 'at-spi2-common', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'bubblewrap', 'build-essential', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'coinor-cbc', 'coinor-libcbc3.1:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'cutadapt', 'dbus', 'dbus-bin', 'dbus-daemon', 'dbus-session-bus-common', 'dbus-system-bus-common', 'dbus-user-session', 'dconf-gsettings-backend:amd64', 'dconf-service', 'default-jre', 'default-jre-headless', 'docutils-common', 'dpkg-dev', 'fastp', 'fastqc', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-font-awesome-legacy', 'fonts-glyphicons-halflings', 'fonts-lyx', 'fonts-mathjax', 'g++', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'git', 'git-man', 'glycin-loaders', 'glycin-thumbnailers', 'gsettings-desktop-schemas', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'hisat2', 'java-common', 'javascript-common', 'junit4', 'libabsl20260526:amd64', 'libaom3:amd64', 'libapache-pom-java', 'libapparmor1:amd64', 'libasan8:amd64', 'libasound2-data', 'libasound2t64:amd64', 'libatk-bridge2.0-0t64:amd64', 'libatk1.0-0t64:amd64', 'libatomic1:amd64', 'libatspi2.0-0t64:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif16:amd64', 'libbigwig0t64:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost-filesystem1.92.0:amd64', 'libboost-iostreams1.92.0:amd64', 'libboost-program-options1.92.0:amd64', 'libboost-regex1.92-dev:amd64', 'libboost-regex1.92.0:amd64', 'libboost1.92-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo-gobject2:amd64', 'libcairo2:amd64', 'libcap2:amd64', 'libcc1-0:amd64', 'libcloudproviders0:amd64', 'libcolord2:amd64', 'libcom-err2:amd64', 'libcommons-beanutils-java', 'libcommons-codec-java', 'libcommons-collections3-java', 'libcommons-collections4-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-math3-java', 'libcommons-parent-java', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcups2t64:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libdbus-1-3:amd64', 'libdconf1:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libepoxy0:amd64', 'liberror-perl', 'libexpat1:amd64', 'libezmorph-java', 'libffi8:amd64', 'libfindbin-libs-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-2:amd64', 'libgbm1:amd64', 'libgcc-16-dev:amd64', 'libgcrypt20:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgfortran5:amd64', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglib2.0-0t64:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libglycin-2-0:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgpg-error0:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgtk-3-0t64:amd64', 'libgtk-3-common', 'libhamcrest-java', 'libharfbuzz-subset0:amd64', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhtsjdk-java', 'libhwasan0:amd64', 'libhwloc15:amd64', 'libhwy1t64:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libimagequant0:amd64', 'libisal2:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjaxen-java', 'libjbig0:amd64', 'libjbzip2-java', 'libjemalloc2:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-datatables-extensions', 'libjs-jquery-metadata', 'libjs-jquery-selectize.js', 'libjs-jquery-tablesorter', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-sphinxdoc', 'libjs-twitter-bootstrap-datepicker', 'libjson-java', 'libjson-perl', 'libjxl0.11:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'libllvm22:amd64', 'liblog4j1.2-java', 'liblsan0:amd64', 'liblua5.4-0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnlopt1:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnuma1:amd64', 'libopenjp2-7:amd64', 'libp11-kit0:amd64', 'libpam-systemd:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-1:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.14:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librav1e0.8:amd64', 'libreadline8t64:amd64', 'librhino-java', 'librsvg2-2:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libslf4j-java', 'libsm6:amd64', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstaden-read14t64:amd64', 'libstdc++-16-dev:amd64', 'libsvtav1enc4:amd64', 'libsystemd-shared:amd64', 'libtasn1-6:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libvulkan1:amd64', 'libwayland-client0:amd64', 'libwayland-cursor0:amd64', 'libwayland-egl1:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxerces2-java', 'libxext6:amd64', 'libxfixes3:amd64', 'libxft2:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxkbcommon0:amd64', 'libxml-commons-external-java', 'libxml-commons-resolver1.1-java', 'libxml2-16:amd64', 'libxom-java', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxres1:amd64', 'libxshmfence1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libyaml-0-2:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'libzopfli1', 'linux-libc-dev', 'make', 'media-types', 'megadepth', 'mesa-libgallium:amd64', 'multiqc', 'ncbi-vdb-data', 'netbase', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openjdk-25-jre:amd64', 'openjdk-25-jre-headless:amd64', 'openssl', 'pandoc', 'pandoc-data', 'patch', 'pci.ids', 'perl', 'perl-modules-5.42', 'pigz', 'procps', 'python-babel-localedata', 'python-matplotlib-data', 'python3', 'python3-alabaster', 'python3-attr', 'python3-babel', 'python3-brotli', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-coloredlogs', 'python3-colormath', 'python3-configargparse', 'python3-connection-pool', 'python3-contourpy', 'python3-cutadapt', 'python3-cycler', 'python3-dateutil', 'python3-datrie', 'python3-decorator', 'python3-deeptools', 'python3-deeptoolsintervals', 'python3-defusedxml', 'python3-dnaio', 'python3-docutils', 'python3-dpath', 'python3-fastjsonschema', 'python3-fonttools', 'python3-git', 'python3-gitdb', 'python3-htseq', 'python3-humanfriendly', 'python3-humanize', 'python3-idna', 'python3-imagesize', 'python3-jinja2', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-jupyter-core', 'python3-kiwisolver', 'python3-linkify-it', 'python3-lxml:amd64', 'python3-lz4', 'python3-lzstring', 'python3-markdown', 'python3-markdown-it', 'python3-markupsafe', 'python3-matplotlib', 'python3-mdurl', 'python3-minimal', 'python3-mpmath', 'python3-nbformat', 'python3-networkx', 'python3-numpy', 'python3-numpy-dev:amd64', 'python3-numpydoc', 'python3-packaging', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-plac', 'python3-platformdirs', 'python3-plotly', 'python3-psutil', 'python3-pulp', 'python3-py2bit', 'python3-pyaml-env', 'python3-pybigwig', 'python3-pygments', 'python3-pyparsing', 'python3-pysam', 'python3-pytz', 'python3-referencing', 'python3-requests', 'python3-retry', 'python3-rich', 'python3-rich-click', 'python3-roman-numerals', 'python3-rpds-py', 'python3-scipy', 'python3-smart-open', 'python3-smmap', 'python3-snowballstemmer', 'python3-spectra', 'python3-sphinx', 'python3-stopit', 'python3-sympy', 'python3-tabulate', 'python3-tenacity', 'python3-throttler', 'python3-tk', 'python3-toposort', 'python3-traitlets', 'python3-uc-micro', 'python3-ufolib2', 'python3-uharfbuzz', 'python3-urllib3', 'python3-wrapt', 'python3-xopen', 'python3-yaml', 'python3-yte', 'python3-zopfli', 'python3.14', 'python3.14-minimal', 'python3.14-tk', 'r-base-core', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocio', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-cigarillo', 'r-bioc-delayedarray', 'r-bioc-deseq2', 'r-bioc-genomeinfodb', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-seqinfo', 'r-bioc-sparsearray', 'r-bioc-summarizedexperiment', 'r-bioc-tximport', 'r-bioc-ucsc.utils', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-askpass', 'r-cran-backports', 'r-cran-base64enc', 'r-cran-bh', 'r-cran-bitops', 'r-cran-boot', 'r-cran-broom', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-car', 'r-cran-cardata', 'r-cran-caret', 'r-cran-class', 'r-cran-cli', 'r-cran-clock', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-colourpicker', 'r-cran-commonmark', 'r-cran-conquer', 'r-cran-corrplot', 'r-cran-cowplot', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-crosstalk', 'r-cran-curl', 'r-cran-data.table', 'r-cran-deriv', 'r-cran-diagram', 'r-cran-digest', 'r-cran-doby', 'r-cran-dplyr', 'r-cran-dt', 'r-cran-e1071', 'r-cran-evaluate', 'r-cran-farver', 'r-cran-fastmap', 'r-cran-fontawesome', 'r-cran-foreach', 'r-cran-forecast', 'r-cran-formatr', 'r-cran-formula', 'r-cran-fracdiff', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-future', 'r-cran-future.apply', 'r-cran-generics', 'r-cran-ggplot2', 'r-cran-ggpubr', 'r-cran-ggrepel', 'r-cran-ggsci', 'r-cran-ggsignif', 'r-cran-globals', 'r-cran-glue', 'r-cran-gower', 'r-cran-gprofiler2', 'r-cran-gridextra', 'r-cran-gtable', 'r-cran-hardhat', 'r-cran-highr', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-ipred', 'r-cran-isoband', 'r-cran-iterators', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-kernsmooth', 'r-cran-knitr', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lava', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-listenv', 'r-cran-littler', 'r-cran-lme4', 'r-cran-lmtest', 'r-cran-locfit', 'r-cran-lubridate', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixmodels', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mgcv', 'r-cran-microbenchmark', 'r-cran-mime', 'r-cran-miniui', 'r-cran-minqa', 'r-cran-modelmetrics', 'r-cran-modelr', 'r-cran-nlme', 'r-cran-nloptr', 'r-cran-nnet', 'r-cran-numderiv', 'r-cran-openssl', 'r-cran-otel', 'r-cran-parallelly', 'r-cran-pbkrtest', 'r-cran-pheatmap', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plotly', 'r-cran-plyr', 'r-cran-polynom', 'r-cran-proc', 'r-cran-prodlim', 'r-cran-progressr', 'r-cran-promises', 'r-cran-proxy', 'r-cran-purrr', 'r-cran-quantreg', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rbibutils', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcpparmadillo', 'r-cran-rcppeigen', 'r-cran-rcurl', 'r-cran-rdpack', 'r-cran-recipes', 'r-cran-reformulas', 'r-cran-reshape2', 'r-cran-restfulr', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rpart', 'r-cran-rstatix', 'r-cran-s7', 'r-cran-sass', 'r-cran-scales', 'r-cran-shape', 'r-cran-shiny', 'r-cran-shinyjs', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-sparsem', 'r-cran-sparsevctrs', 'r-cran-squarem', 'r-cran-statmod', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-survival', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-timechange', 'r-cran-timedate', 'r-cran-tinytex', 'r-cran-tzdb', 'r-cran-urca', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xtable', 'r-cran-yaml', 'r-cran-zoo', 'r-pkg-team-core-architecture', 'readline-common', 'salmon', 'samtools', 'sensible-utils', 'sgml-base', 'shared-mime-info', 'snakemake', 'sphinx-common', 'systemd', 'systemd-sysv', 'trim-galore', 'ucf', 'unicode-data', 'unzip', 'user-session-migration', 'x11-common', 'xdg-utils', 'xkb-data', 'xml-core', 'xz-utils', 'zip'] 7m41.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'dpkg', '--purge', 'pigx-rnaseq'] 7m41.0s DUMP: dpkg: warning: ignoring request to remove pigx-rnaseq which is not installed 7m41.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'dpkg', '--purge', 'pigx-rnaseq'] 7m41.0s INFO: Running scripts post_purge 7m41.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/post_purge_exceptions'] 7m41.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/post_purge_exceptions'] 7m41.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'dpkg', '--purge', '--pending'] 7m41.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'dpkg', '--purge', '--pending'] 7m41.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'dpkg', '--remove', '--pending'] 7m41.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'dpkg', '--remove', '--pending'] 7m41.0s INFO: Running scripts post_test 7m41.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/post_test_exceptions'] 7m41.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'tmp/scripts/post_test_exceptions'] 7m41.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy'] 7m41.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy'] 7m41.5s INFO: IGNORED broken symlink: /etc/vconsole.conf (flag L+ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 7m41.5s INFO: IGNORED broken symlink: /etc/default/locale (flag L+ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 7m41.8s INFO: IGNORED broken symlink: /run/varlink/registry/io.systemd.Journal (flag L systemd-tmpfiles snippet /usr/lib/tmpfiles.d/20-systemd-varlink.conf) 7m41.8s INFO: IGNORED broken symlink: /run/varlink/registry/io.systemd.Manager (flag L systemd-tmpfiles snippet /usr/lib/tmpfiles.d/20-systemd-varlink.conf) 7m41.8s INFO: IGNORED broken symlink: /run/varlink/registry/io.systemd.Unit (flag L systemd-tmpfiles snippet /usr/lib/tmpfiles.d/20-systemd-varlink.conf) 7m41.8s DEBUG: No broken symlinks as far as we can find. 7m41.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'dpkg-divert', '--list'] 7m41.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 7m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'dpkg-divert', '--list'] 7m41.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'apt-get', 'clean'] 7m42.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy', 'apt-get', 'clean'] 7m42.0s DEBUG: Recording chroot state 7m42.5s INFO: IGNORED PATH@1: /home (flag Q systemd-tmpfiles snippet /usr/lib/tmpfiles.d/home.conf) 7m42.5s INFO: IGNORED PATH@1: /var/ (flag q systemd-tmpfiles snippet /usr/lib/tmpfiles.d/var.conf) 7m42.5s INFO: IGNORED PATH@1: /var/lib/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/var.conf) 7m42.5s INFO: IGNORED PATH@1: /var/lib/systemd/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 7m42.5s INFO: IGNORED PATH@1: /var/cache/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/var.conf) 7m42.5s INFO: IGNORED PATH@1: /var/log/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/var.conf) 7m42.5s INFO: IGNORED PATH@1: /var/spool/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/var.conf) 7m42.5s INFO: IGNORED PATH@1: /var/tmp/ (flag q systemd-tmpfiles snippet /usr/lib/tmpfiles.d/tmp.conf) 7m42.5s INFO: IGNORED PATH@1: /etc/issue (flag C! systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 7m42.5s INFO: IGNORED PATH@1: /etc/nsswitch.conf (flag C! systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 7m42.5s INFO: IGNORED PATH@1: /etc/pam.d/ (flag C! systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 7m42.6s INFO: IGNORED PATH@1: /root/ (flag d- systemd-tmpfiles snippet /usr/lib/tmpfiles.d/provision.conf) 7m42.6s INFO: IGNORED PATH@1: /run/lock/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 7m42.6s INFO: IGNORED PATH@1: /tmp/ (flag q systemd-tmpfiles snippet /usr/lib/tmpfiles.d/tmp.conf) 7m42.6s INFO: IGNORED PATH@1: /srv/ (flag q systemd-tmpfiles snippet /usr/lib/tmpfiles.d/home.conf) 7m42.6s INFO: IGNORED PATH@2: /home (flag Q systemd-tmpfiles snippet /usr/lib/tmpfiles.d/home.conf) 7m42.6s INFO: IGNORED PATH@2: /var/ (flag q systemd-tmpfiles snippet /usr/lib/tmpfiles.d/var.conf) 7m42.6s INFO: IGNORED PATH@2: /var/lib/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/var.conf) 7m42.6s INFO: IGNORED PATH@2: /var/lib/private/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 7m42.6s INFO: IGNORED PATH@2: /var/lib/systemd/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 7m42.6s INFO: IGNORED PATH@2: /var/cache/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/var.conf) 7m42.6s INFO: IGNORED PATH@2: /var/cache/private/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 7m42.6s INFO: IGNORED PATH@2: /var/log/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/var.conf) 7m42.6s INFO: IGNORED PATH@2: /var/log/private/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 7m42.6s INFO: IGNORED PATH@2: /var/spool/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/var.conf) 7m42.6s INFO: IGNORED PATH@2: /var/tmp/ (flag q systemd-tmpfiles snippet /usr/lib/tmpfiles.d/tmp.conf) 7m42.6s INFO: IGNORED PATH@2: /etc/vconsole.conf (flag L+ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 7m42.6s INFO: IGNORED PATH@2: /etc/issue (flag C! systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 7m42.6s INFO: IGNORED PATH@2: /etc/nsswitch.conf (flag C! systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 7m42.6s INFO: IGNORED PATH@2: /etc/default/locale (flag L+ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 7m42.6s INFO: IGNORED PATH@2: /etc/pam.d/ (flag C! systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 7m42.7s INFO: IGNORED PATH@2: /root/ (flag d- systemd-tmpfiles snippet /usr/lib/tmpfiles.d/provision.conf) 7m42.7s INFO: IGNORED PATH@2: /root/.ssh/ (flag d- systemd-tmpfiles snippet /usr/lib/tmpfiles.d/provision.conf) 7m42.7s INFO: IGNORED PATH@2: /run/log/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 7m42.7s INFO: IGNORED PATH@2: /run/user/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 7m42.7s INFO: IGNORED PATH@2: /run/systemd/report.sign/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 7m42.7s INFO: IGNORED PATH@2: /run/systemd/dissect-root/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 7m42.7s INFO: IGNORED PATH@2: /run/systemd/shutdown/ (flag d$ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 7m42.7s INFO: IGNORED PATH@2: /run/systemd/machines/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 7m42.7s INFO: IGNORED PATH@2: /run/systemd/users/ (flag d$ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 7m42.7s INFO: IGNORED PATH@2: /run/systemd/sessions/ (flag d$ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 7m42.7s INFO: IGNORED PATH@2: /run/systemd/seats/ (flag d$ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 7m42.7s INFO: IGNORED PATH@2: /run/systemd/ask-password/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 7m42.7s INFO: IGNORED PATH@2: /run/systemd/netif/ (flag d$ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd-network.conf) 7m42.7s INFO: IGNORED PATH@2: /run/systemd/netif/leases/ (flag d$ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd-network.conf) 7m42.7s INFO: IGNORED PATH@2: /run/systemd/netif/links/ (flag d$ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd-network.conf) 7m42.7s INFO: IGNORED PATH@2: /run/sendsigs.omit.d/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 7m42.7s INFO: IGNORED PATH@2: /run/varlink/registry/io.systemd.Journal (flag L systemd-tmpfiles snippet /usr/lib/tmpfiles.d/20-systemd-varlink.conf) 7m42.7s INFO: IGNORED PATH@2: /run/varlink/registry/io.systemd.Manager (flag L systemd-tmpfiles snippet /usr/lib/tmpfiles.d/20-systemd-varlink.conf) 7m42.7s INFO: IGNORED PATH@2: /run/varlink/registry/io.systemd.Unit (flag L systemd-tmpfiles snippet /usr/lib/tmpfiles.d/20-systemd-varlink.conf) 7m42.7s INFO: IGNORED PATH@2: /run/sshd/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/20-systemd-ssh-generator.conf) 7m42.7s INFO: IGNORED PATH@2: /run/lock/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 7m42.7s INFO: IGNORED PATH@2: /tmp/ (flag q systemd-tmpfiles snippet /usr/lib/tmpfiles.d/tmp.conf) 7m42.7s INFO: IGNORED PATH@2: /tmp/.font-unix/ (flag D systemd-tmpfiles snippet /usr/lib/tmpfiles.d/x11.conf) 7m42.7s INFO: IGNORED PATH@2: /tmp/.XIM-unix/ (flag D systemd-tmpfiles snippet /usr/lib/tmpfiles.d/x11.conf) 7m42.7s INFO: IGNORED PATH@2: /tmp/.ICE-unix/ (flag D systemd-tmpfiles snippet /usr/lib/tmpfiles.d/x11.conf) 7m42.7s INFO: IGNORED PATH@2: /tmp/.X11-unix/ (flag D systemd-tmpfiles snippet /usr/lib/tmpfiles.d/x11.conf) 7m42.7s INFO: IGNORED PATH@2: /srv/ (flag q systemd-tmpfiles snippet /usr/lib/tmpfiles.d/home.conf) 7m42.7s INFO: PASS: Installation and purging test. 7m43.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy/dev/shm'] 7m43.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy/dev/shm'] 7m43.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy/dev/console'] 7m43.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy/dev/console'] 7m43.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy/dev/ptmx'] 7m43.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy/dev/ptmx'] 7m43.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy/dev/pts'] 7m43.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy/dev/pts'] 7m43.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy/proc'] 7m43.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy/proc'] 7m43.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy'] 7m43.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpl1xuuxiy'] 7m43.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpl1xuuxiy 7m43.4s INFO: PASS: All tests. 7m43.4s INFO: piuparts run ends. ret=0 End: 2026-10-19 18:51:06 GMT