Start: 2024-02-27 06:19:14 GMT Package: plasmidid Version: 1.6.5+dfsg-2 Installed-Size: 331 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3:any, ncbi-blast+, bedtools, bowtie2, samtools, prokka, cd-hit, mash, circos Recommends: trimmomatic, spades, python3-biopython, python3-numpy, python3-pandas Description: mapping-based, assembly-assisted plasmid identification tool Homepage: https://github.com/BU-ISCIII/plasmidID Description-md5: d2e67d45c872bf3607006dab611aef29 Section: science Priority: optional Filename: pool/main/p/plasmidid/plasmidid_1.6.5+dfsg-2_amd64.deb Size: 47212 MD5sum: fa7b528e02d2aacb387b176a5356e052 SHA256: e0ec3f8d2467bd4f685d0c2c32b08c57c3cf170714b522094b657a1f11f9336f Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt plasmidid=1.6.5+dfsg-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.3.1~202401311821~1.3-2-g28295102 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt plasmidid=1.6.5+dfsg-2 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp7o9uqum5 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp7o9uqum5 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmp7o9uqum5/tmp/scripts/ 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp7o9uqum5/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'apt-get', 'update'] 0m5.6s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9749 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7152 kB] Fetched 17.1 MB in 4s (4412 kB/s) Reading package lists... 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'apt-get', 'update'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'apt-get', '-yf', 'dist-upgrade'] 0m6.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: liblzma5 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 250 kB of archives. After this operation, 30.7 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.6.0-0.1 [250 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 250 kB in 0s (6193 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5225 files and directories currently installed.) Preparing to unpack .../liblzma5_5.6.0-0.1_amd64.deb ... Unpacking liblzma5:amd64 (5.6.0-0.1) over (5.4.5-0.3) ... Setting up liblzma5:amd64 (5.6.0-0.1) ... Processing triggers for libc-bin (2.37-15) ... 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'apt-get', '-yf', 'dist-upgrade'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.4s DUMP: 981bd11f1443cd8682ce0ba6f2cc54b1 - 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.4s INFO: Running scripts post_setup 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/post_setup_dummy_users'] 0m8.3s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/post_setup_dummy_users'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/post_setup_forbid_home'] 0m8.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/post_setup_forbid_home'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/post_setup_minimize'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/post_setup_minimize'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/post_setup_zz_backports'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/post_setup_zz_backports'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'apt-get', 'clean'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'apt-get', 'clean'] 0m8.4s DEBUG: Recording chroot state 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.0s DUMP: install ok installed apt apt 2.7.12 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.39.3-6 install ok installed coreutils coreutils 9.4-3+b1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.16 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.4 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240201-3 install ok installed gpgv gpgv 2.2.40-1.1+b1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.12 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2 install ok installed libblkid1:amd64 libblkid1 2.39.3-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b2 install ok installed libc-bin libc-bin 2.37-15 install ok installed libc6:amd64 libc6 2.37-15 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-4+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240201-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30:amd64 libgnutls30 3.8.3-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzma5:amd64 liblzma5 5.6.0-0.1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.39.3-6 install ok installed libnettle8:amd64 libnettle8 3.9.1-2+b1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1+b1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b2 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-6 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssl3:amd64 libssl3 3.1.5-1 install ok installed libstdc++6:amd64 libstdc++6 14-20240201-3 install ok installed libsystemd0:amd64 libsystemd0 255.3-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libudev1:amd64 libudev1 255.3-2 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.3-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.39.3-6 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl-base perl-base 5.38.2-3 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.08-6 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.39.3-6 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3+b1 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'dpkg-divert', '--list'] 0m9.0s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'dpkg-divert', '--list'] 0m9.0s INFO: Running scripts is_testable 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/is_testable_uninstallable'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/is_testable_uninstallable'] 0m9.0s INFO: apt-cache does not know about any of the requested packages 0m9.0s INFO: Running scripts pre_test 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_test_exceptions'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_test_exceptions'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_test_root_password'] 0m9.0s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_test_root_password'] 0m9.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5'] 0m9.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5'] 0m10.2s DEBUG: No broken symlinks as far as we can find. 0m10.2s INFO: Running scripts pre_install 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_install_database-server'] 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_install_database-server'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_install_exceptions'] 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_install_exceptions'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_install_extras'] 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_install_extras'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_install_log_alternatives'] 0m10.2s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' dpkg-divert: warning: diverting file '/usr/bin/update-alternatives' from an Essential package with rename is dangerous, use --no-rename 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_install_log_alternatives'] 0m10.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5'] 0m10.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5'] 0m11.3s DEBUG: No broken symlinks as far as we can find. 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'apt-cache', 'policy'] 0m12.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'apt-cache', 'policy'] 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'apt-cache', 'policy', 'plasmidid'] 0m12.5s DUMP: plasmidid: Installed: (none) Candidate: 1.6.5+dfsg-2 Version table: 1.6.5+dfsg-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'apt-cache', 'policy', 'plasmidid'] 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'apt-get', '-y', 'install', 'plasmidid=1.6.5+dfsg-2'] 0m47.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: adwaita-icon-theme aragorn at-spi2-common bedtools bowtie2 ca-certificates ca-certificates-java cd-hit circos default-jre default-jre-headless fontconfig fontconfig-config fonts-circos-symbols fonts-cmu fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme hmmer infernal java-common less libabsl20220623 libaom3 libasound2 libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libavif16 libb-hooks-op-check-perl libbio-perl-perl libbio-searchio-hmmer-perl libbrotli1 libbsd0 libcairo2 libcapnp-1.0.1 libcarp-always-perl libclone-perl libconfig-general-perl libcups2 libcurl3-gnutls libdata-dumper-simple-perl libdata-stag-perl libdatrie1 libdav1d7 libdbus-1-3 libde265-0 libdeflate0 libdevel-callchecker-perl libdivsufsort3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdynaloader-functions-perl libedit2 libelf1 libexpat1 libfile-basedir-perl libfont-ttf-perl libfontconfig1 libfreetype6 libfribidi0 libgav1-1 libgd-perl libgd3 libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgetopt-simple-perl libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphics-colornames-perl libgraphics-colorobject-perl libgraphite2-3 libgsl27 libgslcblas0 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhts3 libhtscodecs2 libicu72 libio-all-perl libio-string-perl libipc-system-simple-perl libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.5-0 liblerc4 liblist-allutils-perl liblist-someutils-perl liblist-utilsby-perl libllvm17 liblmdb0 libmath-bezier-perl libmath-round-perl libmath-vec-perl libmath-vecstat-perl libmbedcrypto7 libmbedtls14 libmbedx509-1 libmodule-implementation-perl libmodule-runtime-perl libmurmurhash2 libncbi6 libncurses6 libncursesw6 libnghttp2-14 libnsl2 libnspr4 libnss3 libnumber-format-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libparams-classify-perl libparams-validate-perl libpciaccess0 libpcsclite1 libperl5.38 libpixman-1-0 libpng16-16 libproc2-0 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib librav1e0 libreadline8 libreadonly-perl libregexp-common-perl librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libset-intspan-perl libsharpyuv0 libspiffy-perl libsqlite3-0 libssh2-1 libstatistics-basic-perl libsvg-perl libsvtav1enc1d1 libswiss-perl libtext-format-perl libthai-data libthai0 libtiff6 libtirpc-common libtirpc3 libtry-tiny-perl libvulkan1 libwebp7 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 libyuv0 libz3-4 mash media-types ncbi-blast+ ncbi-data ncbi-tools-bin netbase openjdk-17-jre openjdk-17-jre-headless openssl parallel perl perl-modules-5.38 procps prodigal prokka python3 python3-minimal python3.11 python3.11-minimal readline-common samtools sensible-utils shared-mime-info sysstat ucf x11-common xz-utils Suggested packages: bowtie2-examples hmmer-doc libasound2-plugins alsa-utils bioperl libxml-sax-expatxs-perl cups-common libxml-parser-perl libgd-tools gdbm-l10n low-memory-monitor gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user gvfs libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-rav1e libheif-plugin-svtenc libdb-file-lock-perl libfile-mimeinfo-perl libfile-readbackwards-perl libfreezethaw-perl libmldbm-perl liblcms2-utils libscalar-number-perl pciutils pcscd lm-sensors libsub-name-perl libvibrant6b ncbi-cn3d ncbi-tools-x11 libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic csh fish ksh tcsh zsh perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binutils binfmt-support readline-doc cwltool isag Recommended packages: librsvg2-common circos-tools alsa-ucm-conf alsa-topology-conf bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-writer-perl libxml-twig-perl libxml-writer-perl libwww-perl perl-tk libxml-libxslt-perl libmldbm-perl libxml-perl dbus libgdk-pixbuf2.0-bin libglib2.0-data xdg-user-dirs libpod-coverage-perl libtest-pod-perl libgail-common libgtk2.0-bin libheif-plugin-aomenc libheif-plugin-x265 krb5-locales libldap-common liblist-someutils-xs-perl libgpm2 publicsuffix libsasl2-modules libcgi-pm-perl mesa-vulkan-drivers | vulkan-icd libxml-sax-expat-perl libatk-wrapper-java-jni fonts-dejavu-extra trimmomatic spades python3-biopython python3-numpy python3-pandas psmisc systemd | cron | cron-daemon The following NEW packages will be installed: adwaita-icon-theme aragorn at-spi2-common bedtools bowtie2 ca-certificates ca-certificates-java cd-hit circos default-jre default-jre-headless fontconfig fontconfig-config fonts-circos-symbols fonts-cmu fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme hmmer infernal java-common less libabsl20220623 libaom3 libasound2 libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libavif16 libb-hooks-op-check-perl libbio-perl-perl libbio-searchio-hmmer-perl libbrotli1 libbsd0 libcairo2 libcapnp-1.0.1 libcarp-always-perl libclone-perl libconfig-general-perl libcups2 libcurl3-gnutls libdata-dumper-simple-perl libdata-stag-perl libdatrie1 libdav1d7 libdbus-1-3 libde265-0 libdeflate0 libdevel-callchecker-perl libdivsufsort3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdynaloader-functions-perl libedit2 libelf1 libexpat1 libfile-basedir-perl libfont-ttf-perl libfontconfig1 libfreetype6 libfribidi0 libgav1-1 libgd-perl libgd3 libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgetopt-simple-perl libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphics-colornames-perl libgraphics-colorobject-perl libgraphite2-3 libgsl27 libgslcblas0 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhts3 libhtscodecs2 libicu72 libio-all-perl libio-string-perl libipc-system-simple-perl libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.5-0 liblerc4 liblist-allutils-perl liblist-someutils-perl liblist-utilsby-perl libllvm17 liblmdb0 libmath-bezier-perl libmath-round-perl libmath-vec-perl libmath-vecstat-perl libmbedcrypto7 libmbedtls14 libmbedx509-1 libmodule-implementation-perl libmodule-runtime-perl libmurmurhash2 libncbi6 libncurses6 libncursesw6 libnghttp2-14 libnsl2 libnspr4 libnss3 libnumber-format-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libparams-classify-perl libparams-validate-perl libpciaccess0 libpcsclite1 libperl5.38 libpixman-1-0 libpng16-16 libproc2-0 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib librav1e0 libreadline8 libreadonly-perl libregexp-common-perl librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libset-intspan-perl libsharpyuv0 libspiffy-perl libsqlite3-0 libssh2-1 libstatistics-basic-perl libsvg-perl libsvtav1enc1d1 libswiss-perl libtext-format-perl libthai-data libthai0 libtiff6 libtirpc-common libtirpc3 libtry-tiny-perl libvulkan1 libwebp7 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 libyuv0 libz3-4 mash media-types ncbi-blast+ ncbi-data ncbi-tools-bin netbase openjdk-17-jre openjdk-17-jre-headless openssl parallel perl perl-modules-5.38 plasmidid procps prodigal prokka python3 python3-minimal python3.11 python3.11-minimal readline-common samtools sensible-utils shared-mime-info sysstat ucf x11-common xz-utils 0 upgraded, 241 newly installed, 0 to remove and 0 not upgraded. Need to get 223 MB of archives. After this operation, 1028 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 perl-modules-5.38 all 5.38.2-3 [2899 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libgdbm6 amd64 1.23-5+b1 [72.8 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4 amd64 1.23-5+b1 [48.5 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libperl5.38 amd64 5.38.2-3 [4275 kB] Get:5 http://deb.debian.org/debian sid/main amd64 perl amd64 5.38.2-3 [236 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.8-1 [817 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.0-1 [101 kB] Get:8 http://deb.debian.org/debian sid/main amd64 python3.11-minimal amd64 3.11.8-1 [2037 kB] Get:9 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.11.6-1 [26.2 kB] Get:10 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:11 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.4+20240113-1 [135 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-5+b1 [33.2 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-5+b1 [80.0 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:16 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-5+b1 [333 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-5+b1 [135 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1 [10.7 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libtirpc3 amd64 1.3.4+ds-1 [82.1 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-3 [40.0 kB] Get:21 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-3 [69.1 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libreadline8 amd64 8.2-3+b1 [167 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.45.1-1 [894 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.8-1 [1825 kB] Get:25 http://deb.debian.org/debian sid/main amd64 python3.11 amd64 3.11.8-1 [597 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.11.6-1 [9224 B] Get:27 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.11.6-1 [26.2 kB] Get:28 http://deb.debian.org/debian sid/main amd64 less amd64 590-2 [131 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get:30 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get:31 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get:32 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.1.5-1 [1241 kB] Get:33 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:34 http://deb.debian.org/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:35 http://deb.debian.org/debian sid/main amd64 xz-utils amd64 5.6.0-0.1 [489 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [307 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libglib2.0-0 amd64 2.78.4-1 [1452 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:40 http://deb.debian.org/debian sid/main amd64 shared-mime-info amd64 2.4-1 [751 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-2+b2 [167 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libpng16-16 amd64 1.6.43-1 [277 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.19-1 [41.4 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get:45 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [108 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.3.2-0.4 [308 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.10+dfsg-3+b1 [138 kB] Get:50 http://deb.debian.org/debian sid/main amd64 gtk-update-icon-cache amd64 3.24.41-1 [45.7 kB] Get:51 http://deb.debian.org/debian sid/main amd64 hicolor-icon-theme all 0.17-2 [11.4 kB] Get:52 http://deb.debian.org/debian sid/main amd64 adwaita-icon-theme all 46~beta-4 [614 kB] Get:53 http://deb.debian.org/debian sid/main amd64 aragorn amd64 1.2.41-2 [88.0 kB] Get:54 http://deb.debian.org/debian sid/main amd64 at-spi2-common all 2.50.0-1 [163 kB] Get:55 http://deb.debian.org/debian sid/main amd64 bedtools amd64 2.31.1+dfsg-2 [678 kB] Get:56 http://deb.debian.org/debian sid/main amd64 bowtie2 amd64 2.5.2-1 [1438 kB] Get:57 http://deb.debian.org/debian sid/main amd64 ca-certificates-java all 20240118 [11.6 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14-20240201-3 [136 kB] Get:59 http://deb.debian.org/debian sid/main amd64 cd-hit amd64 4.8.1-4 [522 kB] Get:60 http://deb.debian.org/debian sid/main amd64 fonts-circos-symbols all 0.69.9+dfsg-2 [46.7 kB] Get:61 http://deb.debian.org/debian sid/main amd64 fonts-cmu all 0.7.0-5 [4892 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libregexp-common-perl all 2017060201-3 [175 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libcarp-always-perl all 0.16-1 [9620 B] Get:64 http://deb.debian.org/debian sid/main amd64 libconfig-general-perl all 2.65-2 [71.8 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libdata-dumper-simple-perl all 0.11-7 [12.5 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libaom3 amd64 3.8.1-1 [1868 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libdav1d7 amd64 1.4.0-1 [546 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libabsl20220623 amd64 20220623.1-3 [393 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libgav1-1 amd64 0.18.0-1+b1 [332 kB] Get:70 http://deb.debian.org/debian sid/main amd64 librav1e0 amd64 0.7.1-2 [900 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libsvtav1enc1d1 amd64 1.7.0+dfsg-2+b1 [2169 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libyuv0 amd64 0.0~git202401110.af6ac82-1 [169 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libavif16 amd64 1.0.4-1 [105 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b1 [439 kB] Get:76 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:77 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:78 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-1 [317 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-1 [388 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libheif-plugin-dav1d amd64 1.17.6-1 [9592 B] Get:81 http://deb.debian.org/debian sid/main amd64 libde265-0 amd64 1.0.15-1 [187 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libheif-plugin-libde265 amd64 1.17.6-1 [12.9 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libheif1 amd64 1.17.6-1 [284 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libbsd0 amd64 0.11.8-1 [125 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:87 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:89 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.7-1 [802 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libxpm4 amd64 1:3.5.17-1 [55.8 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libgd3 amd64 2.3.3-9+b1 [125 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libgd-perl amd64 2.78-1+b1 [131 kB] Get:93 http://deb.debian.org/debian sid/main amd64 libgetopt-simple-perl all 1.52-7 [15.5 kB] Get:94 http://deb.debian.org/debian sid/main amd64 libmath-bezier-perl all 0.01-4 [7032 B] Get:95 http://deb.debian.org/debian sid/main amd64 libmath-round-perl all 0.08-1 [9172 B] Get:96 http://deb.debian.org/debian sid/main amd64 libb-hooks-op-check-perl amd64 0.22-2+b2 [10.7 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libdevel-callchecker-perl amd64 0.008-2+b1 [15.1 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libparams-classify-perl amd64 0.015-2+b2 [22.4 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:102 http://deb.debian.org/debian sid/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:103 http://deb.debian.org/debian sid/main amd64 libparams-validate-perl amd64 1.31-2+b1 [63.6 kB] Get:104 http://deb.debian.org/debian sid/main amd64 libreadonly-perl all 2.050-3 [23.1 kB] Get:105 http://deb.debian.org/debian sid/main amd64 libset-intspan-perl all 1.19-3 [25.3 kB] Get:106 http://deb.debian.org/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:107 http://deb.debian.org/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:108 http://deb.debian.org/debian sid/main amd64 liblist-allutils-perl all 0.19-1 [42.0 kB] Get:109 http://deb.debian.org/debian sid/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:110 http://deb.debian.org/debian sid/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:111 http://deb.debian.org/debian sid/main amd64 libmath-vec-perl all 1.01-5 [17.1 kB] Get:112 http://deb.debian.org/debian sid/main amd64 libspiffy-perl all 0.46-1 [25.7 kB] Get:113 http://deb.debian.org/debian sid/main amd64 libio-all-perl all 0.87-2 [67.3 kB] Get:114 http://deb.debian.org/debian sid/main amd64 libmath-vecstat-perl all 0.08-3 [8408 B] Get:115 http://deb.debian.org/debian sid/main amd64 libgraphics-colornames-perl all 3.5.0-3 [32.1 kB] Get:116 http://deb.debian.org/debian sid/main amd64 libgraphics-colorobject-perl all 0.5.0-10.1 [28.1 kB] Get:117 http://deb.debian.org/debian sid/main amd64 libtext-format-perl all 0.62-1 [22.7 kB] Get:118 http://deb.debian.org/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:119 http://deb.debian.org/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:120 http://deb.debian.org/debian sid/main amd64 libclone-perl amd64 0.46-1+b1 [13.8 kB] Get:121 http://deb.debian.org/debian sid/main amd64 libnumber-format-perl all 1.76-1 [29.4 kB] Get:122 http://deb.debian.org/debian sid/main amd64 libstatistics-basic-perl all 1.6611-3 [61.5 kB] Get:123 http://deb.debian.org/debian sid/main amd64 libsvg-perl all 2.87-1 [64.3 kB] Get:124 http://deb.debian.org/debian sid/main amd64 circos all 0.69.9+dfsg-2 [14.0 MB] Get:125 http://deb.debian.org/debian sid/main amd64 java-common all 0.75 [6640 B] Get:126 http://deb.debian.org/debian sid/main amd64 libavahi-common-data amd64 0.8-13+b1 [111 kB] Get:127 http://deb.debian.org/debian sid/main amd64 libavahi-common3 amd64 0.8-13+b1 [43.3 kB] Get:128 http://deb.debian.org/debian sid/main amd64 libdbus-1-3 amd64 1.14.10-4 [203 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libavahi-client3 amd64 0.8-13+b1 [47.1 kB] Get:130 http://deb.debian.org/debian sid/main amd64 libcups2 amd64 2.4.7-1+b1 [247 kB] Get:131 http://deb.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get:132 http://deb.debian.org/debian sid/main amd64 libnspr4 amd64 2:4.35-1.1+b1 [109 kB] Get:133 http://deb.debian.org/debian sid/main amd64 libnss3 amd64 2:3.98-1 [1382 kB] Get:134 http://deb.debian.org/debian sid/main amd64 libasound2-data all 1.2.10-3 [20.7 kB] Get:135 http://deb.debian.org/debian sid/main amd64 libasound2 amd64 1.2.10-3 [368 kB] Get:136 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get:137 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 8.3.0-2 [2213 kB] Get:138 http://deb.debian.org/debian sid/main amd64 libpcsclite1 amd64 2.0.1-1+b1 [51.1 kB] Get:139 http://deb.debian.org/debian sid/main amd64 openjdk-17-jre-headless amd64 17.0.10+7-1 [43.7 MB] Get:140 http://deb.debian.org/debian sid/main amd64 default-jre-headless amd64 2:1.17-75 [3068 B] Get:141 http://deb.debian.org/debian sid/main amd64 libgtk2.0-common all 2.24.33-3 [2659 kB] Get:142 http://deb.debian.org/debian sid/main amd64 libatk1.0-0 amd64 2.50.0-1+b1 [50.1 kB] Get:143 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get:144 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get:145 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get:146 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:147 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:148 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.0-1+b1 [531 kB] Get:149 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.15.0-1 [462 kB] Get:150 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get:151 http://deb.debian.org/debian sid/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:152 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB] Get:153 http://deb.debian.org/debian sid/main amd64 libthai0 amd64 0.1.29-2 [49.1 kB] Get:154 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [215 kB] Get:155 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [47.3 kB] Get:156 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [35.1 kB] Get:157 http://deb.debian.org/debian sid/main amd64 libxcomposite1 amd64 1:0.4.5-1 [16.6 kB] Get:158 http://deb.debian.org/debian sid/main amd64 libxfixes3 amd64 1:6.0.0-2 [22.7 kB] Get:159 http://deb.debian.org/debian sid/main amd64 libxcursor1 amd64 1:1.2.1-1 [40.9 kB] Get:160 http://deb.debian.org/debian sid/main amd64 libxdamage1 amd64 1:1.1.6-1 [15.1 kB] Get:161 http://deb.debian.org/debian sid/main amd64 libxi6 amd64 2:1.8.1-1 [79.0 kB] Get:162 http://deb.debian.org/debian sid/main amd64 libxinerama1 amd64 2:1.1.4-3 [17.8 kB] Get:163 http://deb.debian.org/debian sid/main amd64 libxrandr2 amd64 2:1.5.2-2+b1 [39.2 kB] Get:164 http://deb.debian.org/debian sid/main amd64 libgtk2.0-0 amd64 2.24.33-3 [1816 kB] Get:165 http://deb.debian.org/debian sid/main amd64 libglvnd0 amd64 1.7.0-1 [51.3 kB] Get:166 http://deb.debian.org/debian sid/main amd64 libdrm-common all 2.4.120-2 [7688 B] Get:167 http://deb.debian.org/debian sid/main amd64 libdrm2 amd64 2.4.120-2 [38.1 kB] Get:168 http://deb.debian.org/debian sid/main amd64 libglapi-mesa amd64 24.0.1-1 [36.1 kB] Get:169 http://deb.debian.org/debian sid/main amd64 libx11-xcb1 amd64 2:1.8.7-1 [232 kB] Get:170 http://deb.debian.org/debian sid/main amd64 libxcb-dri2-0 amd64 1.15-1 [107 kB] Get:171 http://deb.debian.org/debian sid/main amd64 libxcb-dri3-0 amd64 1.15-1 [107 kB] Get:172 http://deb.debian.org/debian sid/main amd64 libxcb-glx0 amd64 1.15-1 [122 kB] Get:173 http://deb.debian.org/debian sid/main amd64 libxcb-present0 amd64 1.15-1 [105 kB] Get:174 http://deb.debian.org/debian sid/main amd64 libxcb-randr0 amd64 1.15-1 [117 kB] Get:175 http://deb.debian.org/debian sid/main amd64 libxcb-sync1 amd64 1.15-1 [109 kB] Get:176 http://deb.debian.org/debian sid/main amd64 libxcb-xfixes0 amd64 1.15-1 [109 kB] Get:177 http://deb.debian.org/debian sid/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:178 http://deb.debian.org/debian sid/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:179 http://deb.debian.org/debian sid/main amd64 libvulkan1 amd64 1.3.275.0-1 [124 kB] Get:180 http://deb.debian.org/debian sid/main amd64 libdrm-amdgpu1 amd64 2.4.120-2 [21.4 kB] Get:181 http://deb.debian.org/debian sid/main amd64 libpciaccess0 amd64 0.17-3 [51.6 kB] Get:182 http://deb.debian.org/debian sid/main amd64 libdrm-intel1 amd64 2.4.120-2 [62.7 kB] Get:183 http://deb.debian.org/debian sid/main amd64 libdrm-nouveau2 amd64 2.4.120-2 [19.3 kB] Get:184 http://deb.debian.org/debian sid/main amd64 libdrm-radeon1 amd64 2.4.120-2 [22.2 kB] Get:185 http://deb.debian.org/debian sid/main amd64 libelf1 amd64 0.190-1+b1 [176 kB] Get:186 http://deb.debian.org/debian sid/main amd64 libedit2 amd64 3.1-20230828-1 [93.1 kB] Get:187 http://deb.debian.org/debian sid/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get:188 http://deb.debian.org/debian sid/main amd64 libllvm17 amd64 1:17.0.6-5 [23.7 MB] Get:189 http://deb.debian.org/debian sid/main amd64 libsensors-config all 1:3.6.0-8 [14.4 kB] Get:190 http://deb.debian.org/debian sid/main amd64 libsensors5 amd64 1:3.6.0-8+b1 [34.7 kB] Get:191 http://deb.debian.org/debian sid/main amd64 libgl1-mesa-dri amd64 24.0.1-1 [8278 kB] Get:192 http://deb.debian.org/debian sid/main amd64 libglx-mesa0 amd64 24.0.1-1 [151 kB] Get:193 http://deb.debian.org/debian sid/main amd64 libglx0 amd64 1.7.0-1 [34.7 kB] Get:194 http://deb.debian.org/debian sid/main amd64 libgl1 amd64 1.7.0-1 [89.7 kB] Get:195 http://deb.debian.org/debian sid/main amd64 libgif7 amd64 5.2.2-1 [43.9 kB] Get:196 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+23 [252 kB] Get:197 http://deb.debian.org/debian sid/main amd64 libxtst6 amd64 2:1.2.3-1.1 [28.0 kB] Get:198 http://deb.debian.org/debian sid/main amd64 openjdk-17-jre amd64 17.0.10+7-1 [184 kB] Get:199 http://deb.debian.org/debian sid/main amd64 default-jre amd64 2:1.17-75 [1056 B] Get:200 http://deb.debian.org/debian sid/main amd64 libdivsufsort3 amd64 2.0.1-6 [45.6 kB] Get:201 http://deb.debian.org/debian sid/main amd64 hmmer amd64 3.4+dfsg-2 [1062 kB] Get:202 http://deb.debian.org/debian sid/main amd64 infernal amd64 1.1.5-2 [5914 kB] Get:203 http://deb.debian.org/debian sid/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get:204 http://deb.debian.org/debian sid/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get:205 http://deb.debian.org/debian sid/main amd64 libbio-searchio-hmmer-perl all 1.7.3-2 [95.9 kB] Get:206 http://deb.debian.org/debian sid/main amd64 libcapnp-1.0.1 amd64 1.0.1-3+b1 [1460 kB] Get:207 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-4+b1 [19.7 kB] Get:208 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-4+b1 [57.0 kB] Get:209 http://deb.debian.org/debian sid/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5+b3 [184 kB] Get:210 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.59.0-1 [74.3 kB] Get:211 http://deb.debian.org/debian sid/main amd64 libpsl5 amd64 0.21.2-1+b1 [59.1 kB] Get:212 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:213 http://deb.debian.org/debian sid/main amd64 libssh2-1 amd64 1.11.0-4 [215 kB] Get:214 http://deb.debian.org/debian sid/main amd64 libcurl3-gnutls amd64 8.6.0-3 [421 kB] Get:215 http://deb.debian.org/debian sid/main amd64 libgslcblas0 amd64 2.7.1+dfsg-6+b1 [107 kB] Get:216 http://deb.debian.org/debian sid/main amd64 libgsl27 amd64 2.7.1+dfsg-6+b1 [934 kB] Get:217 http://deb.debian.org/debian sid/main amd64 libhtscodecs2 amd64 1.6.0-1+b1 [93.0 kB] Get:218 http://deb.debian.org/debian sid/main amd64 libhts3 amd64 1.19+ds-1 [447 kB] Get:219 http://deb.debian.org/debian sid/main amd64 liblmdb0 amd64 0.9.31-1+b1 [44.8 kB] Get:220 http://deb.debian.org/debian sid/main amd64 libmbedcrypto7 amd64 2.28.7-1 [280 kB] Get:221 http://deb.debian.org/debian sid/main amd64 libmbedx509-1 amd64 2.28.7-1 [130 kB] Get:222 http://deb.debian.org/debian sid/main amd64 libmbedtls14 amd64 2.28.7-1 [165 kB] Get:223 http://deb.debian.org/debian sid/main amd64 libmurmurhash2 amd64 1.6-1 [5824 B] Get:224 http://deb.debian.org/debian sid/main amd64 ncbi-data all 6.1.20170106+dfsg1-10 [3557 kB] Get:225 http://deb.debian.org/debian sid/main amd64 libncbi6 amd64 6.1.20170106+dfsg1-10+b1 [4073 kB] Get:226 http://deb.debian.org/debian sid/main amd64 libncurses6 amd64 6.4+20240113-1 [104 kB] Get:227 http://deb.debian.org/debian sid/main amd64 libswiss-perl all 1.80-1 [776 kB] Get:228 http://deb.debian.org/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:229 http://deb.debian.org/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:230 http://deb.debian.org/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:231 http://deb.debian.org/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b2 [313 kB] Get:232 http://deb.debian.org/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:233 http://deb.debian.org/debian sid/main amd64 mash amd64 2.3+dfsg-6 [194 kB] Get:234 http://deb.debian.org/debian sid/main amd64 ncbi-blast+ amd64 2.12.0+ds-4 [12.5 MB] Get:235 http://deb.debian.org/debian sid/main amd64 ncbi-tools-bin amd64 6.1.20170106+dfsg1-10+b1 [1926 kB] Get:236 http://deb.debian.org/debian sid/main amd64 sysstat amd64 12.7.5-2 [623 kB] Get:237 http://deb.debian.org/debian sid/main amd64 parallel all 20231122+ds-1 [1946 kB] Get:238 http://deb.debian.org/debian sid/main amd64 samtools amd64 1.19.2-1 [645 kB] Get:239 http://deb.debian.org/debian sid/main amd64 prodigal amd64 1:2.6.3-6 [508 kB] Get:240 http://deb.debian.org/debian sid/main amd64 prokka all 1.14.6+dfsg-6 [15.2 MB] Get:241 http://deb.debian.org/debian sid/main amd64 plasmidid amd64 1.6.5+dfsg-2 [47.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 223 MB in 2s (90.6 MB/s) Selecting previously unselected package perl-modules-5.38. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5228 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.38_5.38.2-3_all.deb ... Unpacking perl-modules-5.38 (5.38.2-3) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.23-5+b1_amd64.deb ... Unpacking libgdbm6:amd64 (1.23-5+b1) ... Selecting previously unselected package libgdbm-compat4:amd64. 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Setting up libexpat1:amd64 (2.6.0-1) ... Setting up python3.11-minimal (3.11.8-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7558 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.11.6-1_amd64.deb ... Unpacking python3-minimal (3.11.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... 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Preparing to unpack .../213-prokka_1.14.6+dfsg-6_all.deb ... Unpacking prokka (1.14.6+dfsg-6) ... Selecting previously unselected package plasmidid. Preparing to unpack .../214-plasmidid_1.6.5+dfsg-2_amd64.deb ... Unpacking plasmidid (1.6.5+dfsg-2) ... Setting up libhtscodecs2:amd64 (1.6.0-1+b1) ... Setting up media-types (10.1.0) ... Setting up liblmdb0:amd64 (0.9.31-1+b1) ... Setting up libgraphite2-3:amd64 (1.3.14-2) ... Setting up aragorn (1.2.41-2) ... Setting up liblcms2-2:amd64 (2.14-2+b1) ... Setting up ncbi-data (6.1.20170106+dfsg1-10) ... Setting up libpixman-1-0:amd64 (0.42.2-1+b1) ... Setting up libsharpyuv0:amd64 (1.3.2-0.4) ... Setting up libaom3:amd64 (3.8.1-1) ... Setting up libpciaccess0:amd64 (0.17-3) ... Setting up libabsl20220623:amd64 (20220623.1-3) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libkeyutils1:amd64 (1.6.3-3) ... Setting up libpsl5:amd64 (0.21.2-1+b1) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-4+b1) ... Setting up hicolor-icon-theme (0.17-2) ... Setting up java-common (0.75) ... Setting up libdatrie1:amd64 (0.2.13-3) ... Setting up libgslcblas0:amd64 (2.7.1+dfsg-6+b1) ... Setting up libmurmurhash2:amd64 (1.6-1) ... Setting up libcapnp-1.0.1:amd64 (1.0.1-3+b1) ... Setting up prodigal (1:2.6.3-6) ... Setting up libglib2.0-0:amd64 (2.78.4-1) ... No schema files found: doing nothing. Setting up libglvnd0:amd64 (1.7.0-1) ... Setting up libtirpc-common (1.3.4+ds-1) ... Setting up libbrotli1:amd64 (1.1.0-2+b3) ... Setting up libsqlite3-0:amd64 (3.45.1-1) ... Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libsensors-config (1:3.6.0-8) ... Setting up libnghttp2-14:amd64 (1.59.0-1) ... Setting up libdeflate0:amd64 (1.19-1) ... Setting up less (590-2) ... Setting up libgsl27:amd64 (2.7.1+dfsg-6+b1) ... Setting up libsvtav1enc1d1:amd64 (1.7.0+dfsg-2+b1) ... Setting up libgomp1:amd64 (14-20240201-3) ... Setting up libjbig0:amd64 (2.1-6.1+b1) ... Setting up librav1e0:amd64 (0.7.1-2) ... Setting up libkrb5support0:amd64 (1.20.1-5+b1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-4+b1) ... Setting up libasound2-data (1.2.10-3) ... Setting up infernal (1.1.5-2) ... Setting up fonts-cmu (0.7.0-5) ... Setting up libz3-4:amd64 (4.8.12-3.1+b2) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-2+b2) ... Setting up libmbedcrypto7:amd64 (2.28.7-1) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libnspr4:amd64 (2:4.35-1.1+b1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libavahi-common-data:amd64 (0.8-13+b1) ... Setting up libncurses6:amd64 (6.4+20240113-1) ... Setting up libdbus-1-3:amd64 (1.14.10-4) ... Setting up xz-utils (5.6.0-0.1) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up libfribidi0:amd64 (1.0.13-3+b1) ... Setting up perl-modules-5.38 (5.38.2-3) ... Setting up libproc2-0:amd64 (2:4.0.4-4) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16:amd64 (1.6.43-1) ... Setting up mash (2.3+dfsg-6) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libgav1-1:amd64 (0.18.0-1+b1) ... Setting up libpcsclite1:amd64 (2.0.1-1+b1) ... Setting up libsensors5:amd64 (1:3.6.0-8+b1) ... Setting up libncursesw6:amd64 (6.4+20240113-1) ... Setting up libk5crypto3:amd64 (1.20.1-5+b1) ... Setting up libglapi-mesa:amd64 (24.0.1-1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-4+b1) ... Setting up libvulkan1:amd64 (1.3.275.0-1) ... Setting up libwebp7:amd64 (1.3.2-0.4) ... Setting up libgif7:amd64 (5.2.2-1) ... Setting up libdav1d7:amd64 (1.4.0-1) ... Setting up sensible-utils (0.0.22) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up at-spi2-common (2.50.0-1) ... Setting up libtiff6:amd64 (4.5.1+git230720-4) ... Setting up procps (2:4.0.4-4) ... Setting up libasound2:amd64 (1.2.10-3) ... Setting up libthai-data (0.1.29-2) ... Setting up libssh2-1:amd64 (1.11.0-4) ... Setting up netbase (6.4) ... Setting up libgtk2.0-common (2.24.33-3) ... Setting up libatk1.0-0:amd64 (2.50.0-1+b1) ... Setting up libkrb5-3:amd64 (1.20.1-5+b1) ... Setting up fonts-circos-symbols (0.69.9+dfsg-2) ... Setting up libde265-0:amd64 (1.0.15-1) ... Setting up libdivsufsort3:amd64 (2.0.1-6) ... Setting up openssl (3.1.5-1) ... Setting up libbsd0:amd64 (0.11.8-1) ... Setting up libdrm-common (2.4.120-2) ... Setting up libyuv0:amd64 (0.0~git202401110.af6ac82-1) ... Setting up libelf1:amd64 (0.190-1+b1) ... Setting up readline-common (8.2-3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Setting up bedtools (2.31.1+dfsg-2) ... Setting up libgdbm6:amd64 (1.23-5+b1) ... Setting up libncbi6:amd64 (6.1.20170106+dfsg1-10+b1) ... Setting up libavif16:amd64 (1.0.4-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up libxcb-xfixes0:amd64 (1.15-1) ... Setting up libmbedx509-1:amd64 (2.28.7-1) ... Setting up libmbedtls14:amd64 (2.28.7-1) ... Setting up libxcb-render0:amd64 (1.15-1) ... Setting up fontconfig-config (2.15.0-1) ... Setting up libxcb-glx0:amd64 (1.15-1) ... Setting up libedit2:amd64 (3.1-20230828-1) ... Setting up libreadline8:amd64 (8.2-3+b1) ... Setting up libavahi-common3:amd64 (0.8-13+b1) ... Setting up libnss3:amd64 (2:3.98-1) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5+b3) ... Setting up libxcb-present0:amd64 (1.15-1) ... Setting up libthai0:amd64 (0.1.29-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b1) ... Setting up libxcb-sync1:amd64 (1.15-1) ... Setting up shared-mime-info (2.4-1) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... Setting up libgdbm-compat4:amd64 (1.23-5+b1) ... Setting up ucf (3.0043+nmu1) ... Setting up libxcb-dri2-0:amd64 (1.15-1) ... Setting up libdrm2:amd64 (2.4.120-2) ... Setting up ncbi-tools-bin (6.1.20170106+dfsg1-10+b1) ... Setting up libxcb-randr0:amd64 (1.15-1) ... Setting up hmmer (3.4+dfsg-2) ... Setting up libx11-6:amd64 (2:1.8.7-1) ... Setting up libharfbuzz0b:amd64 (8.3.0-2) ... Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-3+b1) ... Setting up libfontconfig1:amd64 (2.15.0-1) ... Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libllvm17:amd64 (1:17.0.6-5) ... Setting up libxcomposite1:amd64 (1:0.4.5-1) ... Setting up sysstat (12.7.5-2) ... Creating config file /etc/default/sysstat with new version update-alternatives: using /usr/bin/sar.sysstat to provide /usr/bin/sar (sar) in auto mode Setting up libavahi-client3:amd64 (0.8-13+b1) ... Setting up libdrm-amdgpu1:amd64 (2.4.120-2) ... Setting up libtirpc3:amd64 (1.3.4+ds-1) ... Setting up libxcb-dri3-0:amd64 (1.15-1) ... Setting up gtk-update-icon-cache (3.24.41-1) ... Setting up libx11-xcb1:amd64 (2:1.8.7-1) ... Setting up fontconfig (2.15.0-1) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:amd64 (2.4.120-2) ... Setting up libxdamage1:amd64 (1:1.1.6-1) ... Setting up libxpm4:amd64 (1:3.5.17-1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up libdrm-radeon1:amd64 (2.4.120-2) ... Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ... Setting up libdrm-intel1:amd64 (2.4.120-2) ... Setting up libgl1-mesa-dri:amd64 (24.0.1-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libperl5.38:amd64 (5.38.2-3) ... Setting up libcurl3-gnutls:amd64 (8.6.0-3) ... Setting up libcairo2:amd64 (1.18.0-1+b1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up perl (5.38.2-3) ... Setting up adwaita-icon-theme (46~beta-4) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libxfixes3:amd64 (1:6.0.0-2) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libxinerama1:amd64 (2:1.1.4-3) ... Setting up libdata-dumper-simple-perl (0.11-7) ... Setting up libxrandr2:amd64 (2:1.5.2-2+b1) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-2+b2) ... Setting up libmath-vecstat-perl (0.08-3) ... Setting up parallel (20231122+ds-1) ... Setting up libspiffy-perl (0.46-1) ... Setting up libmath-round-perl (0.08-1) ... Setting up libcups2:amd64 (2.4.7-1+b1) ... Setting up libnsl2:amd64 (1.3.0-3) ... Setting up libtext-format-perl (0.62-1) ... Setting up libswiss-perl (1.80-1) ... Setting up libcarp-always-perl (0.16-1) ... Setting up libgraphics-colornames-perl (3.5.0-3) ... Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... Setting up libmath-vec-perl (1.01-5) ... Setting up cd-hit (4.8.1-4) ... Setting up libhts3:amd64 (1.19+ds-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libconfig-general-perl (2.65-2) ... Setting up libglx-mesa0:amd64 (24.0.1-1) ... Setting up libset-intspan-perl (1.19-3) ... Setting up libxi6:amd64 (2:1.8.1-1) ... Setting up libglx0:amd64 (1.7.0-1) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libclone-perl:amd64 (0.46-1+b1) ... Setting up libgetopt-simple-perl (1.52-7) ... Setting up libxtst6:amd64 (2:1.2.3-1.1) ... Setting up libpython3.11-stdlib:amd64 (3.11.8-1) ... Setting up libxcursor1:amd64 (1:1.2.1-1) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up libgraphics-colorobject-perl (0.5.0-10.1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libsvg-perl (2.87-1) ... Setting up libnumber-format-perl (1.76-1) ... Setting up libio-all-perl (0.87-2) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2+b1) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libregexp-common-perl (2017060201-3) ... Setting up libmath-bezier-perl (0.01-4) ... Setting up samtools (1.19.2-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libreadonly-perl (2.050-3) ... Setting up libgl1:amd64 (1.7.0-1) ... Setting up openjdk-17-jre-headless:amd64 (17.0.10+7-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libdata-stag-perl (0.14-3) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up libpython3-stdlib:amd64 (3.11.6-1) ... Setting up libstatistics-basic-perl (1.6611-3) ... Setting up python3.11 (3.11.8-1) ... Setting up libgtk2.0-0:amd64 (2.24.33-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b2) ... Setting up python3 (3.11.6-1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up bowtie2 (2.5.2-1) ... Setting up ncbi-blast+ (2.12.0+ds-4) ... Setting up libbio-searchio-hmmer-perl (1.7.3-2) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libmodule-implementation-perl (0.09-2) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up liblist-allutils-perl (0.19-1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libparams-validate-perl:amd64 (1.31-2+b1) ... Setting up libheif-plugin-dav1d:amd64 (1.17.6-1) ... Setting up libheif1:amd64 (1.17.6-1) ... Setting up libgd3:amd64 (2.3.3-9+b1) ... Setting up libheif-plugin-libde265:amd64 (1.17.6-1) ... Setting up libgd-perl (2.78-1+b1) ... Setting up circos (0.69.9+dfsg-2) ... Processing triggers for libc-bin (2.37-15) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up default-jre-headless (2:1.17-75) ... Setting up openjdk-17-jre:amd64 (17.0.10+7-1) ... Setting up default-jre (2:1.17-75) ... Setting up prokka (1.14.6+dfsg-6) ... Setting up plasmidid (1.6.5+dfsg-2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. 0m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'apt-get', '-y', 'install', 'plasmidid=1.6.5+dfsg-2'] 0m47.2s INFO: Running scripts post_install 0m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/post_install_exceptions'] 0m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/post_install_exceptions'] 0m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/post_install_log_alternatives'] 0m47.3s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=python3: piuparts=plasmidid=1.6.5+dfsg-2: /usr/bin/update-alternatives --auto /usr/bin/python3 LOG-ALTERNATIVES: dpkg=less: piuparts=plasmidid=1.6.5+dfsg-2: /usr/bin/update-alternatives --quiet --install /usr/bin/pager pager /usr/bin/less 77 --slave /usr/share/man/man1/pager.1.gz pager.1.gz /usr/share/man/man1/less.1.gz LOG-ALTERNATIVES: dpkg=xz-utils: piuparts=plasmidid=1.6.5+dfsg-2: /usr/bin/update-alternatives --install /usr/bin/lzma lzma /usr/bin/xz 20 --slave /usr/share/man/man1/lzma.1.gz lzma.1.gz /usr/share/man/man1/xz.1.gz --slave /usr/bin/unlzma unlzma /usr/bin/unxz --slave /usr/share/man/man1/unlzma.1.gz unlzma.1.gz /usr/share/man/man1/unxz.1.gz --slave /usr/bin/lzcat lzcat /usr/bin/xzcat --slave /usr/share/man/man1/lzcat.1.gz lzcat.1.gz /usr/share/man/man1/xzcat.1.gz --slave /usr/bin/lzmore lzmore /usr/bin/xzmore --slave /usr/share/man/man1/lzmore.1.gz lzmore.1.gz /usr/share/man/man1/xzmore.1.gz --slave /usr/bin/lzless lzless /usr/bin/xzless --slave /usr/share/man/man1/lzless.1.gz lzless.1.gz /usr/share/man/man1/xzless.1.gz --slave /usr/bin/lzdiff lzdiff /usr/bin/xzdiff --slave /usr/share/man/man1/lzdiff.1.gz lzdiff.1.gz /usr/share/man/man1/xzdiff.1.gz --slave /usr/bin/lzcmp lzcmp /usr/bin/xzcmp --slave /usr/share/man/man1/lzcmp.1.gz lzcmp.1.gz /usr/share/man/man1/xzcmp.1.gz --slave /usr/bin/lzgrep lzgrep /usr/bin/xzgrep --slave /usr/share/man/man1/lzgrep.1.gz lzgrep.1.gz /usr/share/man/man1/xzgrep.1.gz --slave /usr/bin/lzegrep lzegrep /usr/bin/xzegrep --slave /usr/share/man/man1/lzegrep.1.gz lzegrep.1.gz /usr/share/man/man1/xzegrep.1.gz --slave /usr/bin/lzfgrep lzfgrep /usr/bin/xzfgrep --slave /usr/share/man/man1/lzfgrep.1.gz lzfgrep.1.gz /usr/share/man/man1/xzfgrep.1.gz LOG-ALTERNATIVES: dpkg=procps: piuparts=plasmidid=1.6.5+dfsg-2: /usr/bin/update-alternatives --remove w /usr/bin/w.procps LOG-ALTERNATIVES: dpkg=sysstat: piuparts=plasmidid=1.6.5+dfsg-2: /usr/bin/update-alternatives --display sar LOG-ALTERNATIVES: dpkg=sysstat: piuparts=plasmidid=1.6.5+dfsg-2: /usr/bin/update-alternatives --install /usr/bin/sar sar /usr/bin/sar.sysstat 0 --slave /usr/share/man/man1/sar.1.gz sar.1.gz /usr/share/man/man1/sar.sysstat.1.gz LOG-ALTERNATIVES: dpkg=perl: piuparts=plasmidid=1.6.5+dfsg-2: /usr/bin/update-alternatives --remove rename /usr/bin/prename LOG-ALTERNATIVES: dpkg=adwaita-icon-theme: piuparts=plasmidid=1.6.5+dfsg-2: /usr/bin/update-alternatives --install /usr/share/icons/default/index.theme x-cursor-theme /usr/share/icons/Adwaita/cursor.theme 90 LOG-ALTERNATIVES: dpkg=openjdk-17-jre-headless: piuparts=plasmidid=1.6.5+dfsg-2: /usr/bin/update-alternatives --install /usr/bin/java java /usr/lib/jvm/java-17-openjdk-amd64/bin/java 1711 --slave /usr/share/man/man1/java.1.gz java.1.gz /usr/lib/jvm/java-17-openjdk-amd64/man/man1/java.1.gz LOG-ALTERNATIVES: dpkg=openjdk-17-jre-headless: piuparts=plasmidid=1.6.5+dfsg-2: /usr/bin/update-alternatives --install /usr/bin/jpackage jpackage /usr/lib/jvm/java-17-openjdk-amd64/bin/jpackage 1711 --slave /usr/share/man/man1/jpackage.1.gz jpackage.1.gz /usr/lib/jvm/java-17-openjdk-amd64/man/man1/jpackage.1.gz LOG-ALTERNATIVES: dpkg=openjdk-17-jre-headless: piuparts=plasmidid=1.6.5+dfsg-2: /usr/bin/update-alternatives --install /usr/bin/keytool keytool /usr/lib/jvm/java-17-openjdk-amd64/bin/keytool 1711 --slave /usr/share/man/man1/keytool.1.gz keytool.1.gz /usr/lib/jvm/java-17-openjdk-amd64/man/man1/keytool.1.gz LOG-ALTERNATIVES: dpkg=openjdk-17-jre-headless: piuparts=plasmidid=1.6.5+dfsg-2: /usr/bin/update-alternatives --install /usr/bin/rmiregistry rmiregistry /usr/lib/jvm/java-17-openjdk-amd64/bin/rmiregistry 1711 --slave /usr/share/man/man1/rmiregistry.1.gz rmiregistry.1.gz /usr/lib/jvm/java-17-openjdk-amd64/man/man1/rmiregistry.1.gz LOG-ALTERNATIVES: dpkg=openjdk-17-jre-headless: piuparts=plasmidid=1.6.5+dfsg-2: /usr/bin/update-alternatives --install /usr/bin/jexec jexec /usr/lib/jvm/java-17-openjdk-amd64/lib/jexec 1711 --slave /usr/share/binfmts/jar jexec-binfmt /usr/lib/jvm/java-17-openjdk-amd64/lib/jar.binfmt 0m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/post_install_log_alternatives'] 0m47.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5'] 0m48.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5'] 0m50.7s ERROR: WARN: Broken symlinks: /usr/lib/jvm/java-17-openjdk-amd64/lib/libatk-wrapper.so -> ../../../x86_64-linux-gnu/jni/libatk-wrapper.so (openjdk-17-jre:amd64) 0m50.7s INFO: /bin converted to /usr/bin by /usr merge 0m50.7s INFO: /lib converted to /usr/lib by /usr merge 0m50.7s INFO: /lib/init converted to /usr/lib/init by /usr merge 0m50.7s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 0m50.7s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 0m50.7s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 0m50.7s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 0m50.7s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 0m50.7s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 0m50.7s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m50.7s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 0m50.7s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m50.7s INFO: /sbin converted to /usr/sbin by /usr merge 0m51.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', '-ac', '--ignore-obsolete'] 0m57.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', '-ac', '--ignore-obsolete'] 0m57.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m57.0s DUMP: 0.15.6 0m57.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m57.0s INFO: Running adequate version 0.15.6 now. 0m57.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'plasmidid'] 0m57.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'plasmidid'] 0m57.1s INFO: Running scripts pre_remove 0m57.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m57.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m57.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m57.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m57.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_remove_exceptions'] 1m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/pre_remove_exceptions'] 1m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m4.6s DUMP: install ok installed adwaita-icon-theme adwaita-icon-theme 46~beta-4 install ok installed apt apt 2.7.12 install ok installed aragorn aragorn 1.2.41-2 install ok installed at-spi2-common at-spi2-common 2.50.0-1 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bedtools bedtools 2.31.1+dfsg-2 install ok installed bowtie2 bowtie2 2.5.2-1 install ok installed bsdutils bsdutils 1:2.39.3-6 install ok installed ca-certificates ca-certificates 20240203 install ok installed ca-certificates-java ca-certificates-java 20240118 install ok installed cd-hit cd-hit 4.8.1-4 install ok installed circos circos 0.69.9+dfsg-2 install ok installed coreutils coreutils 9.4-3+b1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.16 install ok installed default-jre default-jre 2:1.17-75 install ok installed default-jre-headless default-jre-headless 2:1.17-75 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.4 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed fontconfig fontconfig 2.15.0-1 install ok installed fontconfig-config fontconfig-config 2.15.0-1 install ok installed fonts-circos-symbols fonts-circos-symbols 0.69.9+dfsg-2 install ok installed fonts-cmu fonts-cmu 0.7.0-5 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240201-3 install ok installed gpgv gpgv 2.2.40-1.1+b1 install ok installed grep grep 3.11-4 install ok installed gtk-update-icon-cache gtk-update-icon-cache 3.24.41-1 install ok installed gzip gzip 1.12-1 install ok installed hicolor-icon-theme hicolor-icon-theme 0.17-2 install ok installed hmmer hmmer 3.4+dfsg-2 install ok installed hostname hostname 3.23+nmu2 install ok installed infernal infernal 1.1.5-2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed java-common java-common 0.75 install ok installed less less 590-2 install ok installed libabsl20220623:amd64 libabsl20220623 20220623.1-3 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libaom3:amd64 libaom3 3.8.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.12 install ok installed libasound2:amd64 libasound2 1.2.10-3 install ok installed libasound2-data libasound2-data 1.2.10-3 install ok installed libatk1.0-0:amd64 libatk1.0-0 2.50.0-1+b1 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2 install ok installed libavahi-client3:amd64 libavahi-client3 0.8-13+b1 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.8-13+b1 install ok installed libavahi-common3:amd64 libavahi-common3 0.8-13+b1 install ok installed libavif16:amd64 libavif16 1.0.4-1 install ok installed libb-hooks-op-check-perl:amd64 libb-hooks-op-check-perl 0.22-2+b2 install ok installed libbio-perl-perl libbio-perl-perl 1.7.8-1 install ok installed libbio-searchio-hmmer-perl libbio-searchio-hmmer-perl 1.7.3-2 install ok installed libblkid1:amd64 libblkid1 2.39.3-6 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b3 install ok installed libbsd0:amd64 libbsd0 0.11.8-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b2 install ok installed libc-bin libc-bin 2.37-15 install ok installed libc6:amd64 libc6 2.37-15 install ok installed libcairo2:amd64 libcairo2 1.18.0-1+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcapnp-1.0.1:amd64 libcapnp-1.0.1 1.0.1-3+b1 install ok installed libcarp-always-perl libcarp-always-perl 0.16-1 install ok installed libclone-perl:amd64 libclone-perl 0.46-1+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libconfig-general-perl libconfig-general-perl 2.65-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libcups2:amd64 libcups2 2.4.7-1+b1 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 8.6.0-3 install ok installed libdata-dumper-simple-perl libdata-dumper-simple-perl 0.11-7 install ok installed libdata-stag-perl libdata-stag-perl 0.14-3 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-3 install ok installed libdav1d7:amd64 libdav1d7 1.4.0-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-4+b1 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.14.10-4 install ok installed libde265-0:amd64 libde265-0 1.0.15-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b1 install ok installed libdeflate0:amd64 libdeflate0 1.19-1 install ok installed libdevel-callchecker-perl:amd64 libdevel-callchecker-perl 0.008-2+b1 install ok installed libdivsufsort3:amd64 libdivsufsort3 2.0.1-6 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.120-2 install ok installed libdrm-common libdrm-common 2.4.120-2 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.120-2 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.120-2 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.120-2 install ok installed libdrm2:amd64 libdrm2 2.4.120-2 install ok installed libdynaloader-functions-perl libdynaloader-functions-perl 0.003-3 install ok installed libedit2:amd64 libedit2 3.1-20230828-1 install ok installed libelf1:amd64 libelf1 0.190-1+b1 install ok installed libexpat1:amd64 libexpat1 2.6.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libfile-basedir-perl libfile-basedir-perl 0.09-2 install ok installed libfont-ttf-perl libfont-ttf-perl 1.06-2 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-1 install ok installed libfreetype6:amd64 libfreetype6 2.13.2+dfsg-1+b1 install ok installed libfribidi0:amd64 libfribidi0 1.0.13-3+b1 install ok installed libgav1-1:amd64 libgav1-1 0.18.0-1+b1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240201-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgd-perl libgd-perl 2.78-1+b1 install ok installed libgd3:amd64 libgd3 2.3.3-9+b1 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-5+b1 install ok installed libgdbm6:amd64 libgdbm6 1.23-5+b1 install ok installed libgdk-pixbuf-2.0-0:amd64 libgdk-pixbuf-2.0-0 2.42.10+dfsg-3+b1 install ok installed libgdk-pixbuf2.0-common libgdk-pixbuf2.0-common 2.42.10+dfsg-3 install ok installed libgetopt-simple-perl libgetopt-simple-perl 1.52-7 install ok installed libgif7:amd64 libgif7 5.2.2-1 install ok installed libgl1:amd64 libgl1 1.7.0-1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 24.0.1-1 install ok installed libglapi-mesa:amd64 libglapi-mesa 24.0.1-1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.78.4-1 install ok installed libglvnd0:amd64 libglvnd0 1.7.0-1 install ok installed libglx-mesa0:amd64 libglx-mesa0 24.0.1-1 install ok installed libglx0:amd64 libglx0 1.7.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30:amd64 libgnutls30 3.8.3-1 install ok installed libgomp1:amd64 libgomp1 14-20240201-3 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libgraphics-colornames-perl libgraphics-colornames-perl 3.5.0-3 install ok installed libgraphics-colorobject-perl libgraphics-colorobject-perl 0.5.0-10.1 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2 install ok installed libgsl27:amd64 libgsl27 2.7.1+dfsg-6+b1 install ok installed libgslcblas0:amd64 libgslcblas0 2.7.1+dfsg-6+b1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-5+b1 install ok installed libgtk2.0-0:amd64 libgtk2.0-0 2.24.33-3 install ok installed libgtk2.0-common libgtk2.0-common 2.24.33-3 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 8.3.0-2 install ok installed libheif-plugin-dav1d:amd64 libheif-plugin-dav1d 1.17.6-1 install ok installed libheif-plugin-libde265:amd64 libheif-plugin-libde265 1.17.6-1 install ok installed libheif1:amd64 libheif1 1.17.6-1 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2+b1 install ok installed libhts3:amd64 libhts3 1.19+ds-1 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.6.0-1+b1 install ok installed libicu72:amd64 libicu72 72.1-4+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libio-all-perl libio-all-perl 0.87-2 install ok installed libio-string-perl libio-string-perl 1.08-4 install ok installed libipc-system-simple-perl libipc-system-simple-perl 1.30-2 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-2+b2 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-5+b1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-5+b1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-5+b1 install ok installed liblcms2-2:amd64 liblcms2-2 2.14-2+b1 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-5+b3 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-4+b1 install ok installed liblist-allutils-perl liblist-allutils-perl 0.19-1 install ok installed liblist-someutils-perl liblist-someutils-perl 0.59-1 install ok installed liblist-utilsby-perl liblist-utilsby-perl 0.12-2 install ok installed libllvm17:amd64 libllvm17 1:17.0.6-5 install ok installed liblmdb0:amd64 liblmdb0 0.9.31-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzma5:amd64 liblzma5 5.6.0-0.1 install ok installed libmath-bezier-perl libmath-bezier-perl 0.01-4 install ok installed libmath-round-perl libmath-round-perl 0.08-1 install ok installed libmath-vec-perl libmath-vec-perl 1.01-5 install ok installed libmath-vecstat-perl libmath-vecstat-perl 0.08-3 install ok installed libmbedcrypto7:amd64 libmbedcrypto7 2.28.7-1 install ok installed libmbedtls14:amd64 libmbedtls14 2.28.7-1 install ok installed libmbedx509-1:amd64 libmbedx509-1 2.28.7-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmodule-implementation-perl libmodule-implementation-perl 0.09-2 install ok installed libmodule-runtime-perl libmodule-runtime-perl 0.016-2 install ok installed libmount1:amd64 libmount1 2.39.3-6 install ok installed libmurmurhash2:amd64 libmurmurhash2 1.6-1 install ok installed libncbi6:amd64 libncbi6 6.1.20170106+dfsg1-10+b1 install ok installed libncurses6:amd64 libncurses6 6.4+20240113-1 install ok installed libncursesw6:amd64 libncursesw6 6.4+20240113-1 install ok installed libnettle8:amd64 libnettle8 3.9.1-2+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.59.0-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-3 install ok installed libnspr4:amd64 libnspr4 2:4.35-1.1+b1 install ok installed libnss3:amd64 libnss3 2:3.98-1 install ok installed libnumber-format-perl libnumber-format-perl 1.76-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1+b1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1+b1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.51.0+ds-4 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.51.0+ds-4 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.51.0+ds-4 install ok installed libparams-classify-perl:amd64 libparams-classify-perl 0.015-2+b2 install ok installed libparams-validate-perl:amd64 libparams-validate-perl 1.31-2+b1 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libpcsclite1:amd64 libpcsclite1 2.0.1-1+b1 install ok installed libperl5.38:amd64 libperl5.38 5.38.2-3 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.42.2-1+b1 install ok installed libpng16-16:amd64 libpng16-16 1.6.43-1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-4 install ok installed libpsl5:amd64 libpsl5 0.21.2-1+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.6-1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.8-1 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.8-1 install ok installed librav1e0:amd64 librav1e0 0.7.1-2 install ok installed libreadline8:amd64 libreadline8 8.2-3+b1 install ok installed libreadonly-perl libreadonly-perl 2.050-3 install ok installed libregexp-common-perl libregexp-common-perl 2017060201-3 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-4+b1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b2 install ok installed libsensors-config libsensors-config 1:3.6.0-8 install ok installed libsensors5:amd64 libsensors5 1:3.6.0-8+b1 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libset-intspan-perl libset-intspan-perl 1.19-3 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.3.2-0.4 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-6 install ok installed libspiffy-perl libspiffy-perl 0.46-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.45.1-1 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssh2-1:amd64 libssh2-1 1.11.0-4 install ok installed libssl3:amd64 libssl3 3.1.5-1 install ok installed libstatistics-basic-perl libstatistics-basic-perl 1.6611-3 install ok installed libstdc++6:amd64 libstdc++6 14-20240201-3 install ok installed libsvg-perl libsvg-perl 2.87-1 install ok installed libsvtav1enc1d1:amd64 libsvtav1enc1d1 1.7.0+dfsg-2+b1 install ok installed libswiss-perl libswiss-perl 1.80-1 install ok installed libsystemd0:amd64 libsystemd0 255.3-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtext-format-perl libtext-format-perl 0.62-1 install ok installed libthai-data libthai-data 0.1.29-2 install ok installed libthai0:amd64 libthai0 0.1.29-2 install ok installed libtiff6:amd64 libtiff6 4.5.1+git230720-4 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.4+ds-1 install ok installed libtry-tiny-perl libtry-tiny-perl 0.31-2 install ok installed libudev1:amd64 libudev1 255.3-2 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.3-6 install ok installed libvulkan1:amd64 libvulkan1 1.3.275.0-1 install ok installed libwebp7:amd64 libwebp7 1.3.2-0.4 install ok installed libx11-6:amd64 libx11-6 2:1.8.7-1 install ok installed libx11-data libx11-data 2:1.8.7-1 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.8.7-1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.15-1 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.15-1 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.15-1 install ok installed libxcb-present0:amd64 libxcb-present0 1.15-1 install ok installed libxcb-randr0:amd64 libxcb-randr0 1.15-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.15-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.15-1 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.15-1 install ok installed libxcb-xfixes0:amd64 libxcb-xfixes0 1.15-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.5-1 install ok installed libxcursor1:amd64 libxcursor1 1:1.2.1-1 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.6-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxfixes3:amd64 libxfixes3 1:6.0.0-2 install ok installed libxi6:amd64 libxi6 2:1.8.1-1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.4-3 install ok installed libxml-libxml-perl libxml-libxml-perl 2.0207+dfsg+really+2.0134-1+b2 install ok installed libxml-namespacesupport-perl libxml-namespacesupport-perl 1.12-2 install ok installed libxml-sax-base-perl libxml-sax-base-perl 1.09-3 install ok installed libxml-sax-perl libxml-sax-perl 1.02+dfsg-3 install ok installed libxml-simple-perl libxml-simple-perl 2.25-2 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3+b2 install ok installed libxpm4:amd64 libxpm4 1:3.5.17-1 install ok installed libxrandr2:amd64 libxrandr2 2:1.5.2-2+b1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1 install ok installed libxshmfence1:amd64 libxshmfence1 1.3-1 install ok installed libxtst6:amd64 libxtst6 2:1.2.3-1.1 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libyuv0:amd64 libyuv0 0.0~git202401110.af6ac82-1 install ok installed libz3-4:amd64 libz3-4 4.8.12-3.1+b2 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2+b1 install ok installed mash mash 2.3+dfsg-6 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.39.3-6 install ok installed ncbi-blast+ ncbi-blast+ 2.12.0+ds-4 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg1-10 install ok installed ncbi-tools-bin ncbi-tools-bin 6.1.20170106+dfsg1-10+b1 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed netbase netbase 6.4 install ok installed openjdk-17-jre:amd64 openjdk-17-jre 17.0.10+7-1 install ok installed openjdk-17-jre-headless:amd64 openjdk-17-jre-headless 17.0.10+7-1 install ok installed openssl openssl 3.1.5-1 install ok installed parallel parallel 20231122+ds-1 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl perl 5.38.2-3 install ok installed perl-base perl-base 5.38.2-3 install ok installed perl-modules-5.38 perl-modules-5.38 5.38.2-3 install ok installed plasmidid plasmidid 1.6.5+dfsg-2 install ok installed procps procps 2:4.0.4-4 install ok installed prodigal prodigal 1:2.6.3-6 install ok installed prokka prokka 1.14.6+dfsg-6 install ok installed python3 python3 3.11.6-1 install ok installed python3-minimal python3-minimal 3.11.6-1 install ok installed python3.11 python3.11 3.11.8-1 install ok installed python3.11-minimal python3.11-minimal 3.11.8-1 install ok installed readline-common readline-common 8.2-3 install ok installed samtools samtools 1.19.2-1 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.22 install ok installed shared-mime-info shared-mime-info 2.4-1 install ok installed sysstat sysstat 12.7.5-2 install ok installed sysvinit-utils sysvinit-utils 3.08-6 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-1 install ok installed ucf ucf 3.0043+nmu1 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.39.3-6 install ok installed x11-common x11-common 1:7.7+23 install ok installed xz-utils xz-utils 5.6.0-0.1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3+b1 1m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'apt-get', 'remove', 'adwaita-icon-theme', 'aragorn', 'at-spi2-common', 'bedtools', 'bowtie2', 'ca-certificates', 'ca-certificates-java', 'cd-hit', 'circos', 'default-jre', 'default-jre-headless', 'fontconfig', 'fontconfig-config', 'fonts-circos-symbols', 'fonts-cmu', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'hmmer', 'infernal', 'java-common', 'less', 'libabsl20220623:amd64', 'libaom3:amd64', 'libasound2:amd64', 'libasound2-data', 'libatk1.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif16:amd64', 'libb-hooks-op-check-perl:amd64', 'libbio-perl-perl', 'libbio-searchio-hmmer-perl', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcapnp-1.0.1:amd64', 'libcarp-always-perl', 'libclone-perl:amd64', 'libconfig-general-perl', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdata-dumper-simple-perl', 'libdata-stag-perl', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libdbus-1-3:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl:amd64', 'libdivsufsort3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libelf1:amd64', 'libexpat1:amd64', 'libfile-basedir-perl', 'libfont-ttf-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgetopt-simple-perl', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphics-colornames-perl', 'libgraphics-colorobject-perl', 'libgraphite2-3:amd64', 'libgsl27:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libgtk2.0-0:amd64', 'libgtk2.0-common', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libicu72:amd64', 'libio-all-perl', 'libio-string-perl', 'libipc-system-simple-perl', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblist-allutils-perl', 'liblist-someutils-perl', 'liblist-utilsby-perl', 'libllvm17:amd64', 'liblmdb0:amd64', 'libmath-bezier-perl', 'libmath-round-perl', 'libmath-vec-perl', 'libmath-vecstat-perl', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmurmurhash2:amd64', 'libncbi6:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnumber-format-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libparams-classify-perl:amd64', 'libparams-validate-perl:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.38:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libproc2-0:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'librav1e0:amd64', 'libreadline8:amd64', 'libreadonly-perl', 'libregexp-common-perl', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libset-intspan-perl', 'libsharpyuv0:amd64', 'libspiffy-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstatistics-basic-perl', 'libsvg-perl', 'libsvtav1enc1d1:amd64', 'libswiss-perl', 'libtext-format-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libtry-tiny-perl', 'libvulkan1:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-libxml-perl', 'libxml-namespacesupport-perl', 'libxml-sax-base-perl', 'libxml-sax-perl', 'libxml-simple-perl', 'libxml2:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'mash', 'media-types', 'ncbi-blast+-', 'ncbi-data', 'ncbi-tools-bin', 'netbase', 'openjdk-17-jre:amd64', 'openjdk-17-jre-headless:amd64', 'openssl', 'parallel', 'perl', 'perl-modules-5.38', 'procps', 'prodigal', 'prokka', 'python3', 'python3-minimal', 'python3.11', 'python3.11-minimal', 'readline-common', 'samtools', 'sensible-utils', 'shared-mime-info', 'sysstat', 'ucf', 'x11-common', 'xz-utils', 'plasmidid'] 1m8.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: adwaita-icon-theme aragorn at-spi2-common bedtools bowtie2 ca-certificates ca-certificates-java cd-hit circos default-jre default-jre-headless fontconfig fontconfig-config fonts-circos-symbols fonts-cmu fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme hmmer infernal java-common less libabsl20220623 libaom3 libasound2 libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libavif16 libb-hooks-op-check-perl libbio-perl-perl libbio-searchio-hmmer-perl libbrotli1 libbsd0 libcairo2 libcapnp-1.0.1 libcarp-always-perl libclone-perl libconfig-general-perl libcups2 libcurl3-gnutls libdata-dumper-simple-perl libdata-stag-perl libdatrie1 libdav1d7 libdbus-1-3 libde265-0 libdeflate0 libdevel-callchecker-perl libdivsufsort3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdynaloader-functions-perl libedit2 libelf1 libexpat1 libfile-basedir-perl libfont-ttf-perl libfontconfig1 libfreetype6 libfribidi0 libgav1-1 libgd-perl libgd3 libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgetopt-simple-perl libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphics-colornames-perl libgraphics-colorobject-perl libgraphite2-3 libgsl27 libgslcblas0 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhts3 libhtscodecs2 libicu72 libio-all-perl libio-string-perl libipc-system-simple-perl libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.5-0 liblerc4 liblist-allutils-perl liblist-someutils-perl liblist-utilsby-perl libllvm17 liblmdb0 libmath-bezier-perl libmath-round-perl libmath-vec-perl libmath-vecstat-perl libmbedcrypto7 libmbedtls14 libmbedx509-1 libmodule-implementation-perl libmodule-runtime-perl libmurmurhash2 libncbi6 libncurses6 libncursesw6 libnghttp2-14 libnsl2 libnspr4 libnss3 libnumber-format-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libparams-classify-perl libparams-validate-perl libpciaccess0 libpcsclite1 libperl5.38 libpixman-1-0 libpng16-16 libproc2-0 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib librav1e0 libreadline8 libreadonly-perl libregexp-common-perl librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libset-intspan-perl libsharpyuv0 libspiffy-perl libsqlite3-0 libssh2-1 libstatistics-basic-perl libsvg-perl libsvtav1enc1d1 libswiss-perl libtext-format-perl libthai-data libthai0 libtiff6 libtirpc-common libtirpc3 libtry-tiny-perl libvulkan1 libwebp7 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxpm4 libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 libyuv0 libz3-4 mash media-types ncbi-blast+ ncbi-data ncbi-tools-bin netbase openjdk-17-jre openjdk-17-jre-headless openssl parallel perl perl-modules-5.38 plasmidid procps prodigal prokka python3 python3-minimal python3.11 python3.11-minimal readline-common samtools sensible-utils shared-mime-info sysstat ucf x11-common xz-utils 0 upgraded, 0 newly installed, 241 to remove and 0 not upgraded. After this operation, 1028 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16661 files and directories currently installed.) Removing plasmidid (1.6.5+dfsg-2) ... Removing prokka (1.14.6+dfsg-6) ... Removing default-jre (2:1.17-75) ... Removing openjdk-17-jre:amd64 (17.0.10+7-1) ... Removing libgtk2.0-0:amd64 (2.24.33-3) ... Removing adwaita-icon-theme (46~beta-4) ... Removing aragorn (1.2.41-2) ... Removing libatk1.0-0:amd64 (2.50.0-1+b1) ... Removing at-spi2-common (2.50.0-1) ... Removing bedtools (2.31.1+dfsg-2) ... Removing bowtie2 (2.5.2-1) ... Removing default-jre-headless (2:1.17-75) ... Removing openjdk-17-jre-headless:amd64 (17.0.10+7-1) ... Removing ca-certificates-java (20240118) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing cd-hit (4.8.1-4) ... Removing circos (0.69.9+dfsg-2) ... Removing libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... Removing libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... Removing libpango-1.0-0:amd64 (1.51.0+ds-4) ... Removing fontconfig (2.15.0-1) ... Removing libgd-perl (2.78-1+b1) ... Removing libgd3:amd64 (2.3.3-9+b1) ... Removing libcairo2:amd64 (1.18.0-1+b1) ... Removing libfontconfig1:amd64 (2.15.0-1) ... Removing fontconfig-config (2.15.0-1) ... Removing fonts-circos-symbols (0.69.9+dfsg-2) ... Removing fonts-cmu (0.7.0-5) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing gtk-update-icon-cache (3.24.41-1) ... Removing hicolor-icon-theme (0.17-2) ... Removing hmmer (3.4+dfsg-2) ... Removing infernal (1.1.5-2) ... Removing java-common (0.75) ... Removing less (590-2) ... Removing libavif16:amd64 (1.0.4-1) ... Removing libgav1-1:amd64 (0.18.0-1+b1) ... Removing libabsl20220623:amd64 (20220623.1-3) ... Removing libaom3:amd64 (3.8.1-1) ... Removing libasound2:amd64 (1.2.10-3) ... Removing libasound2-data (1.2.10-3) ... Removing libcups2:amd64 (2.4.7-1+b1) ... Removing libavahi-client3:amd64 (0.8-13+b1) ... Removing libavahi-common3:amd64 (0.8-13+b1) ... Removing libavahi-common-data:amd64 (0.8-13+b1) ... Removing libparams-validate-perl:amd64 (1.31-2+b1) ... Removing liblist-allutils-perl (0.19-1) ... Removing liblist-someutils-perl (0.59-1) ... Removing libmodule-implementation-perl (0.09-2) ... Removing libmodule-runtime-perl (0.016-2) ... Removing libparams-classify-perl:amd64 (0.015-2+b2) ... Removing libdevel-callchecker-perl:amd64 (0.008-2+b1) ... Removing libb-hooks-op-check-perl:amd64 (0.22-2+b2) ... Removing libbio-searchio-hmmer-perl (1.7.3-2) ... Removing libbio-perl-perl (1.7.8-1) ... Removing libharfbuzz0b:amd64 (8.3.0-2) ... Removing libfreetype6:amd64 (2.13.2+dfsg-1+b1) ... Removing samtools (1.19.2-1) ... Removing libhts3:amd64 (1.19+ds-1) ... Removing libcurl3-gnutls:amd64 (8.6.0-3) ... Removing libbrotli1:amd64 (1.1.0-2+b3) ... Removing libgl1:amd64 (1.7.0-1) ... Removing libglx0:amd64 (1.7.0-1) ... Removing libglx-mesa0:amd64 (24.0.1-1) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Removing libgl1-mesa-dri:amd64 (24.0.1-1) ... Removing libllvm17:amd64 (1:17.0.6-5) ... Removing libedit2:amd64 (3.1-20230828-1) ... Removing mash (2.3+dfsg-6) ... Removing libcapnp-1.0.1:amd64 (1.0.1-3+b1) ... Removing libcarp-always-perl (0.16-1) ... Removing libclone-perl:amd64 (0.46-1+b1) ... Removing libconfig-general-perl (2.65-2) ... Removing libdata-dumper-simple-perl (0.11-7) ... Removing libdata-stag-perl (0.14-3) ... Removing libthai0:amd64 (0.1.29-2) ... Removing libdatrie1:amd64 (0.2.13-3) ... Removing libdbus-1-3:amd64 (1.14.10-4) ... Removing libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-3+b1) ... Removing libtiff6:amd64 (4.5.1+git230720-4) ... Removing libdeflate0:amd64 (1.19-1) ... Removing libdivsufsort3:amd64 (2.0.1-6) ... Removing libdrm-amdgpu1:amd64 (2.4.120-2) ... Removing libdrm-radeon1:amd64 (2.4.120-2) ... Removing libdrm-nouveau2:amd64 (2.4.120-2) ... Removing libdrm-intel1:amd64 (2.4.120-2) ... Removing libdynaloader-functions-perl (0.003-3) ... Removing libelf1:amd64 (0.190-1+b1) ... Removing ncbi-blast+ (2.12.0+ds-4) ... Removing python3 (3.11.6-1) ... Removing python3.11 (3.11.8-1) ... Removing python3-minimal (3.11.6-1) ... Removing python3.11-minimal (3.11.8-1) ... Removing libexpat1:amd64 (2.6.0-1) ... Removing libfile-basedir-perl (0.09-2) ... Removing libfont-ttf-perl (1.06-2) ... Removing libfribidi0:amd64 (1.0.13-3+b1) ... Removing libxml-simple-perl (2.25-2) ... Removing libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b2) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Unregistering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Removing libswiss-perl (1.80-1) ... Removing libgraphics-colorobject-perl (0.5.0-10.1) ... Removing libgraphics-colornames-perl (3.5.0-3) ... Removing libio-all-perl (0.87-2) ... Removing libspiffy-perl (0.46-1) ... Removing parallel (20231122+ds-1) ... Removing 'diversion of /usr/bin/parallel to /usr/bin/parallel.moreutils by parallel' Removing 'diversion of /usr/share/man/man1/parallel.1.gz to /usr/share/man/man1/parallel.moreutils.1.gz by parallel' Removing libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... Removing libgetopt-simple-perl (1.52-7) ... Removing libgif7:amd64 (5.2.2-1) ... Removing libglapi-mesa:amd64 (24.0.1-1) ... Removing shared-mime-info (2.4-1) ... Removing libglib2.0-0:amd64 (2.78.4-1) ... Removing libglvnd0:amd64 (1.7.0-1) ... Removing libgomp1:amd64 (14-20240201-3) ... Removing libgraphite2-3:amd64 (1.3.14-2) ... Removing libgsl27:amd64 (2.7.1+dfsg-6+b1) ... Removing libgslcblas0:amd64 (2.7.1+dfsg-6+b1) ... Removing libpython3-stdlib:amd64 (3.11.6-1) ... Removing libpython3.11-stdlib:amd64 (3.11.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libnsl2:amd64 (1.3.0-3) ... Removing libtirpc3:amd64 (1.3.4+ds-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... Removing libgtk2.0-common (2.24.33-3) ... Removing libhtscodecs2:amd64 (1.6.0-1+b1) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Removing libicu72:amd64 (72.1-4+b1) ... Removing libio-string-perl (1.08-4) ... Removing libipc-system-simple-perl (1.30-2) ... Removing libjbig0:amd64 (2.1-6.1+b1) ... Removing libyuv0:amd64 (0.0~git202401110.af6ac82-1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-2+b2) ... Removing libkrb5-3:amd64 (1.20.1-5+b1) ... Removing libk5crypto3:amd64 (1.20.1-5+b1) ... Removing libkeyutils1:amd64 (1.6.3-3) ... Removing libkrb5support0:amd64 (1.20.1-5+b1) ... Removing liblcms2-2:amd64 (2.14-2+b1) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-5+b3) ... Removing liblerc4:amd64 (4.0.0+ds-4+b1) ... Removing liblist-utilsby-perl (0.12-2) ... Removing liblmdb0:amd64 (0.9.31-1+b1) ... Removing libmath-bezier-perl (0.01-4) ... Removing libmath-round-perl (0.08-1) ... Removing libmath-vec-perl (1.01-5) ... Removing libmath-vecstat-perl (0.08-3) ... Removing libmbedtls14:amd64 (2.28.7-1) ... Removing libmbedx509-1:amd64 (2.28.7-1) ... Removing libmbedcrypto7:amd64 (2.28.7-1) ... Removing libmurmurhash2:amd64 (1.6-1) ... Removing ncbi-tools-bin (6.1.20170106+dfsg1-10+b1) ... Removing libncbi6:amd64 (6.1.20170106+dfsg1-10+b1) ... Removing libncurses6:amd64 (6.4+20240113-1) ... Removing procps (2:4.0.4-4) ... Removing libncursesw6:amd64 (6.4+20240113-1) ... Removing libnghttp2-14:amd64 (1.59.0-1) ... Removing libnss3:amd64 (2:3.98-1) ... Removing libnspr4:amd64 (2:4.35-1.1+b1) ... Removing libstatistics-basic-perl (1.6611-3) ... Removing libnumber-format-perl (1.76-1) ... Removing libpciaccess0:amd64 (0.17-3) ... Removing libpcsclite1:amd64 (2.0.1-1+b1) ... Removing libpixman-1-0:amd64 (0.42.2-1+b1) ... Removing libpng16-16:amd64 (1.6.43-1) ... Removing libproc2-0:amd64 (2:4.0.4-4) ... Removing libpsl5:amd64 (0.21.2-1+b1) ... Removing libpython3.11-minimal:amd64 (3.11.8-1) ... find: '/usr/lib/python3': No such file or directory Removing librav1e0:amd64 (0.7.1-2) ... Removing libreadline8:amd64 (8.2-3+b1) ... Removing libreadonly-perl (2.050-3) ... Removing libregexp-common-perl (2017060201-3) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-4+b1) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-4+b1) ... Removing sysstat (12.7.5-2) ... Removing libsensors5:amd64 (1:3.6.0-8+b1) ... Removing libsensors-config (1:3.6.0-8) ... Removing libset-intspan-perl (1.19-3) ... Removing libwebp7:amd64 (1.3.2-0.4) ... Removing libsqlite3-0:amd64 (3.45.1-1) ... Removing libssh2-1:amd64 (1.11.0-4) ... Removing libsvg-perl (2.87-1) ... Removing libsvtav1enc1d1:amd64 (1.7.0+dfsg-2+b1) ... Removing libtext-format-perl (0.62-1) ... Removing libthai-data (0.1.29-2) ... Removing libtirpc-common (1.3.4+ds-1) ... Removing libtry-tiny-perl (0.31-2) ... Removing libvulkan1:amd64 (1.3.275.0-1) ... Removing libx11-xcb1:amd64 (2:1.8.7-1) ... Removing libxcb-dri2-0:amd64 (1.15-1) ... Removing libxcb-dri3-0:amd64 (1.15-1) ... Removing libxcb-glx0:amd64 (1.15-1) ... Removing libxcb-present0:amd64 (1.15-1) ... Removing libxcb-randr0:amd64 (1.15-1) ... Removing libxcb-render0:amd64 (1.15-1) ... Removing libxcb-shm0:amd64 (1.15-1) ... Removing libxcb-sync1:amd64 (1.15-1) ... Removing libxcb-xfixes0:amd64 (1.15-1) ... Removing libxcomposite1:amd64 (1:0.4.5-1) ... Removing libxcursor1:amd64 (1:1.2.1-1) ... Removing libxdamage1:amd64 (1:1.1.6-1) ... Removing libxtst6:amd64 (2:1.2.3-1.1) ... Removing libxrandr2:amd64 (2:1.5.2-2+b1) ... Removing libxfixes3:amd64 (1:6.0.0-2) ... Removing libxi6:amd64 (2:1.8.1-1) ... Removing libxinerama1:amd64 (2:1.1.4-3) ... Removing libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Unregistering Perl SAX parser XML::SAX::PurePerl with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Removing libxml-namespacesupport-perl (1.12-2) ... Removing libxml-sax-base-perl (1.09-3) ... Removing libxpm4:amd64 (1:3.5.17-1) ... Removing libxrender1:amd64 (1:0.9.10-1.1) ... Removing libxshmfence1:amd64 (1.3-1) ... Removing libz3-4:amd64 (4.8.12-3.1+b2) ... Removing media-types (10.1.0) ... Removing ncbi-data (6.1.20170106+dfsg1-10) ... Removing netbase (6.4) ... Removing openssl (3.1.5-1) ... Removing prodigal (1:2.6.3-6) ... Removing readline-common (8.2-3) ... Removing ucf (3.0043+nmu1) ... Removing sensible-utils (0.0.22) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xz-utils (5.6.0-0.1) ... Removing libdrm2:amd64 (2.4.120-2) ... Removing libdrm-common (2.4.120-2) ... Removing perl (5.38.2-3) ... Removing libperl5.38:amd64 (5.38.2-3) ... Removing libgdbm-compat4:amd64 (1.23-5+b1) ... Removing libgdbm6:amd64 (1.23-5+b1) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing perl-modules-5.38 (5.38.2-3) ... Removing libx11-6:amd64 (2:1.8.7-1) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.8-1) ... Removing libx11-data (2:1.8.7-1) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing libheif1:amd64 (1.17.6-1) ... Removing libheif-plugin-libde265:amd64 (1.17.6-1) ... Removing libde265-0:amd64 (1.0.15-1) ... Removing libsharpyuv0:amd64 (1.3.2-0.4) ... Removing libheif-plugin-dav1d:amd64 (1.17.6-1) ... Removing libdav1d7:amd64 (1.4.0-1) ... Processing triggers for libc-bin (2.37-15) ... 1m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'apt-get', 'remove', 'adwaita-icon-theme', 'aragorn', 'at-spi2-common', 'bedtools', 'bowtie2', 'ca-certificates', 'ca-certificates-java', 'cd-hit', 'circos', 'default-jre', 'default-jre-headless', 'fontconfig', 'fontconfig-config', 'fonts-circos-symbols', 'fonts-cmu', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'hmmer', 'infernal', 'java-common', 'less', 'libabsl20220623:amd64', 'libaom3:amd64', 'libasound2:amd64', 'libasound2-data', 'libatk1.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif16:amd64', 'libb-hooks-op-check-perl:amd64', 'libbio-perl-perl', 'libbio-searchio-hmmer-perl', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcapnp-1.0.1:amd64', 'libcarp-always-perl', 'libclone-perl:amd64', 'libconfig-general-perl', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdata-dumper-simple-perl', 'libdata-stag-perl', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libdbus-1-3:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl:amd64', 'libdivsufsort3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libelf1:amd64', 'libexpat1:amd64', 'libfile-basedir-perl', 'libfont-ttf-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgetopt-simple-perl', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphics-colornames-perl', 'libgraphics-colorobject-perl', 'libgraphite2-3:amd64', 'libgsl27:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libgtk2.0-0:amd64', 'libgtk2.0-common', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libicu72:amd64', 'libio-all-perl', 'libio-string-perl', 'libipc-system-simple-perl', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblist-allutils-perl', 'liblist-someutils-perl', 'liblist-utilsby-perl', 'libllvm17:amd64', 'liblmdb0:amd64', 'libmath-bezier-perl', 'libmath-round-perl', 'libmath-vec-perl', 'libmath-vecstat-perl', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmurmurhash2:amd64', 'libncbi6:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnumber-format-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libparams-classify-perl:amd64', 'libparams-validate-perl:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.38:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libproc2-0:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'librav1e0:amd64', 'libreadline8:amd64', 'libreadonly-perl', 'libregexp-common-perl', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libset-intspan-perl', 'libsharpyuv0:amd64', 'libspiffy-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstatistics-basic-perl', 'libsvg-perl', 'libsvtav1enc1d1:amd64', 'libswiss-perl', 'libtext-format-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libtry-tiny-perl', 'libvulkan1:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-libxml-perl', 'libxml-namespacesupport-perl', 'libxml-sax-base-perl', 'libxml-sax-perl', 'libxml-simple-perl', 'libxml2:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'mash', 'media-types', 'ncbi-blast+-', 'ncbi-data', 'ncbi-tools-bin', 'netbase', 'openjdk-17-jre:amd64', 'openjdk-17-jre-headless:amd64', 'openssl', 'parallel', 'perl', 'perl-modules-5.38', 'procps', 'prodigal', 'prokka', 'python3', 'python3-minimal', 'python3.11', 'python3.11-minimal', 'readline-common', 'samtools', 'sensible-utils', 'shared-mime-info', 'sysstat', 'ucf', 'x11-common', 'xz-utils', 'plasmidid'] 1m8.6s INFO: Running scripts post_remove 1m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/post_remove_exceptions'] 1m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/post_remove_exceptions'] 1m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'dpkg', '--purge', 'adwaita-icon-theme', 'aragorn', 'at-spi2-common', 'bedtools', 'bowtie2', 'ca-certificates', 'ca-certificates-java', 'cd-hit', 'circos', 'default-jre', 'default-jre-headless', 'fontconfig', 'fontconfig-config', 'fonts-circos-symbols', 'fonts-cmu', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'hmmer', 'infernal', 'java-common', 'less', 'libabsl20220623:amd64', 'libaom3:amd64', 'libasound2:amd64', 'libasound2-data', 'libatk1.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif16:amd64', 'libb-hooks-op-check-perl:amd64', 'libbio-perl-perl', 'libbio-searchio-hmmer-perl', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcapnp-1.0.1:amd64', 'libcarp-always-perl', 'libclone-perl:amd64', 'libconfig-general-perl', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdata-dumper-simple-perl', 'libdata-stag-perl', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libdbus-1-3:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl:amd64', 'libdivsufsort3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libelf1:amd64', 'libexpat1:amd64', 'libfile-basedir-perl', 'libfont-ttf-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgetopt-simple-perl', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphics-colornames-perl', 'libgraphics-colorobject-perl', 'libgraphite2-3:amd64', 'libgsl27:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libgtk2.0-0:amd64', 'libgtk2.0-common', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libicu72:amd64', 'libio-all-perl', 'libio-string-perl', 'libipc-system-simple-perl', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblist-allutils-perl', 'liblist-someutils-perl', 'liblist-utilsby-perl', 'libllvm17:amd64', 'liblmdb0:amd64', 'libmath-bezier-perl', 'libmath-round-perl', 'libmath-vec-perl', 'libmath-vecstat-perl', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmurmurhash2:amd64', 'libncbi6:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnumber-format-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libparams-classify-perl:amd64', 'libparams-validate-perl:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.38:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libproc2-0:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'librav1e0:amd64', 'libreadline8:amd64', 'libreadonly-perl', 'libregexp-common-perl', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libset-intspan-perl', 'libsharpyuv0:amd64', 'libspiffy-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstatistics-basic-perl', 'libsvg-perl', 'libsvtav1enc1d1:amd64', 'libswiss-perl', 'libtext-format-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libtry-tiny-perl', 'libvulkan1:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-libxml-perl', 'libxml-namespacesupport-perl', 'libxml-sax-base-perl', 'libxml-sax-perl', 'libxml-simple-perl', 'libxml2:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'mash', 'media-types', 'ncbi-blast+', 'ncbi-data', 'ncbi-tools-bin', 'netbase', 'openjdk-17-jre:amd64', 'openjdk-17-jre-headless:amd64', 'openssl', 'parallel', 'perl', 'perl-modules-5.38', 'procps', 'prodigal', 'prokka', 'python3', 'python3-minimal', 'python3.11', 'python3.11-minimal', 'readline-common', 'samtools', 'sensible-utils', 'shared-mime-info', 'sysstat', 'ucf', 'x11-common', 'xz-utils'] 1m9.5s DUMP: (Reading database ... 5402 files and directories currently installed.) Purging configuration files for adwaita-icon-theme (46~beta-4) ... dpkg: warning: ignoring request to remove aragorn which isn't installed dpkg: warning: ignoring request to remove at-spi2-common which isn't installed dpkg: warning: ignoring request to remove bedtools which isn't installed dpkg: warning: ignoring request to remove bowtie2 which isn't installed Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20240118) ... dpkg: warning: ignoring request to remove cd-hit which isn't installed Purging configuration files for circos (0.69.9+dfsg-2) ... dpkg: warning: ignoring request to remove default-jre which isn't installed dpkg: warning: ignoring request to remove default-jre-headless which isn't installed Purging configuration files for fontconfig (2.15.0-1) ... Purging configuration files for fontconfig-config (2.15.0-1) ... dpkg: warning: ignoring request to remove fonts-circos-symbols which isn't installed dpkg: warning: ignoring request to remove fonts-cmu which isn't installed Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... dpkg: warning: ignoring request to remove gtk-update-icon-cache which isn't installed dpkg: warning: ignoring request to remove hicolor-icon-theme which isn't installed dpkg: warning: ignoring request to remove hmmer which isn't installed dpkg: warning: ignoring request to remove infernal which isn't installed Purging configuration files for java-common (0.75) ... dpkg: warning: ignoring request to remove less which isn't installed dpkg: warning: ignoring request to remove libabsl20220623 which isn't installed dpkg: warning: ignoring request to remove libaom3 which isn't installed dpkg: warning: ignoring request to remove libasound2 which isn't installed dpkg: warning: ignoring request to remove libasound2-data which isn't installed dpkg: warning: ignoring request to remove libatk1.0-0 which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libavif16 which isn't installed dpkg: warning: ignoring request to remove libb-hooks-op-check-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove libbio-searchio-hmmer-perl which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcapnp-1.0.1 which isn't installed dpkg: warning: ignoring request to remove libcarp-always-perl which isn't installed dpkg: warning: ignoring request to remove libclone-perl which isn't installed dpkg: warning: ignoring request to remove libconfig-general-perl which isn't installed dpkg: warning: ignoring request to remove libcups2 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libdata-dumper-simple-perl which isn't installed dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdav1d7 which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libde265-0 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdevel-callchecker-perl which isn't installed dpkg: warning: ignoring request to remove libdivsufsort3 which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm-intel1 which isn't installed dpkg: warning: ignoring request to remove libdrm-nouveau2 which isn't installed dpkg: warning: ignoring request to remove libdrm-radeon1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libdynaloader-functions-perl which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libelf1 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfile-basedir-perl which isn't installed dpkg: warning: ignoring request to remove libfont-ttf-perl which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgav1-1 which isn't installed dpkg: warning: ignoring request to remove libgd-perl which isn't installed dpkg: warning: ignoring request to remove libgd3 which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4 which isn't installed dpkg: warning: ignoring request to remove libgdbm6 which isn't installed Purging configuration files for libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-3+b1) ... dpkg: warning: ignoring request to remove libgdk-pixbuf2.0-common which isn't installed dpkg: warning: ignoring request to remove libgetopt-simple-perl which isn't installed dpkg: warning: ignoring request to remove libgif7 which isn't installed dpkg: warning: ignoring request to remove libgl1 which isn't installed Purging configuration files for libgl1-mesa-dri:amd64 (24.0.1-1) ... dpkg: warning: ignoring request to remove libglapi-mesa which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.78.4-1) ... dpkg: warning: ignoring request to remove libglvnd0 which isn't installed dpkg: warning: ignoring request to remove libglx-mesa0 which isn't installed dpkg: warning: ignoring request to remove libglx0 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphics-colornames-perl which isn't installed dpkg: warning: ignoring request to remove libgraphics-colorobject-perl which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libgsl27 which isn't installed dpkg: warning: ignoring request to remove libgslcblas0 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... Purging configuration files for libgtk2.0-0:amd64 (2.24.33-3) ... Purging configuration files for libgtk2.0-common (2.24.33-3) ... dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libheif-plugin-dav1d which isn't installed dpkg: warning: ignoring request to remove libheif-plugin-libde265 which isn't installed dpkg: warning: ignoring request to remove libheif1 which isn't installed dpkg: warning: ignoring request to remove libhts3 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libio-all-perl which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove libipc-system-simple-perl which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove liblist-allutils-perl which isn't installed dpkg: warning: ignoring request to remove liblist-someutils-perl which isn't installed dpkg: warning: ignoring request to remove liblist-utilsby-perl which isn't installed dpkg: warning: ignoring request to remove libllvm17 which isn't installed dpkg: warning: ignoring request to remove liblmdb0 which isn't installed dpkg: warning: ignoring request to remove libmath-bezier-perl which isn't installed dpkg: warning: ignoring request to remove libmath-round-perl which isn't installed dpkg: warning: ignoring request to remove libmath-vec-perl which isn't installed dpkg: warning: ignoring request to remove libmath-vecstat-perl which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto7 which isn't installed dpkg: warning: ignoring request to remove libmbedtls14 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-1 which isn't installed dpkg: warning: ignoring request to remove libmodule-implementation-perl which isn't installed dpkg: warning: ignoring request to remove libmodule-runtime-perl which isn't installed dpkg: warning: ignoring request to remove libmurmurhash2 which isn't installed dpkg: warning: ignoring request to remove libncbi6 which isn't installed dpkg: warning: ignoring request to remove libncurses6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libnspr4 which isn't installed dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove libnumber-format-perl which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libparams-classify-perl which isn't installed dpkg: warning: ignoring request to remove libparams-validate-perl which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpcsclite1 which isn't installed dpkg: warning: ignoring request to remove libperl5.38 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libproc2-0 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.8-1) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove librav1e0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove libreadonly-perl which isn't installed dpkg: warning: ignoring request to remove libregexp-common-perl which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed Purging configuration files for libsensors-config (1:3.6.0-8) ... dpkg: warning: ignoring request to remove libsensors5 which isn't installed dpkg: warning: ignoring request to remove libset-intspan-perl which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libspiffy-perl which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libstatistics-basic-perl which isn't installed dpkg: warning: ignoring request to remove libsvg-perl which isn't installed dpkg: warning: ignoring request to remove libsvtav1enc1d1 which isn't installed dpkg: warning: ignoring request to remove libswiss-perl which isn't installed dpkg: warning: ignoring request to remove libtext-format-perl which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed Purging configuration files for libtirpc-common (1.3.4+ds-1) ... dpkg: warning: ignoring request to remove libtirpc3 which isn't installed dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libvulkan1 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libx11-xcb1 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri2-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri3-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-glx0 which isn't installed dpkg: warning: ignoring request to remove libxcb-present0 which isn't installed dpkg: warning: ignoring request to remove libxcb-randr0 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb-sync1 which isn't installed dpkg: warning: ignoring request to remove libxcb-xfixes0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxcomposite1 which isn't installed dpkg: warning: ignoring request to remove libxcursor1 which isn't installed dpkg: warning: ignoring request to remove libxdamage1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxfixes3 which isn't installed dpkg: warning: ignoring request to remove libxi6 which isn't installed dpkg: warning: ignoring request to remove libxinerama1 which isn't installed dpkg: warning: ignoring request to remove libxml-libxml-perl which isn't installed dpkg: warning: ignoring request to remove libxml-namespacesupport-perl which isn't installed dpkg: warning: ignoring request to remove libxml-sax-base-perl which isn't installed Purging configuration files for libxml-sax-perl (1.02+dfsg-3) ... dpkg: warning: ignoring request to remove libxml-simple-perl which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed dpkg: warning: ignoring request to remove libxrandr2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxshmfence1 which isn't installed dpkg: warning: ignoring request to remove libxtst6 which isn't installed dpkg: warning: ignoring request to remove libxxf86vm1 which isn't installed dpkg: warning: ignoring request to remove libyuv0 which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed dpkg: warning: ignoring request to remove mash which isn't installed Purging configuration files for media-types (10.1.0) ... dpkg: warning: ignoring request to remove ncbi-blast+ which isn't installed Purging configuration files for ncbi-data (6.1.20170106+dfsg1-10) ... dpkg: warning: ignoring request to remove ncbi-tools-bin which isn't installed Purging configuration files for netbase (6.4) ... dpkg: warning: ignoring request to remove openjdk-17-jre which isn't installed Purging configuration files for openjdk-17-jre-headless:amd64 (17.0.10+7-1) ... Purging configuration files for openssl (3.1.5-1) ... Purging configuration files for parallel (20231122+ds-1) ... Purging configuration files for perl (5.38.2-3) ... dpkg: warning: ignoring request to remove perl-modules-5.38 which isn't installed Purging configuration files for procps (2:4.0.4-4) ... dpkg: warning: ignoring request to remove prodigal which isn't installed dpkg: warning: ignoring request to remove prokka which isn't installed Purging configuration files for python3 (3.11.6-1) ... dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed Purging configuration files for python3.11-minimal (3.11.8-1) ... Purging configuration files for readline-common (8.2-3) ... dpkg: warning: ignoring request to remove samtools which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for shared-mime-info (2.4-1) ... Purging configuration files for sysstat (12.7.5-2) ... Purging configuration files for ucf (3.0043+nmu1) ... Purging configuration files for x11-common (1:7.7+23) ... dpkg: warning: ignoring request to remove xz-utils which isn't installed 1m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'dpkg', '--purge', 'adwaita-icon-theme', 'aragorn', 'at-spi2-common', 'bedtools', 'bowtie2', 'ca-certificates', 'ca-certificates-java', 'cd-hit', 'circos', 'default-jre', 'default-jre-headless', 'fontconfig', 'fontconfig-config', 'fonts-circos-symbols', 'fonts-cmu', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'hmmer', 'infernal', 'java-common', 'less', 'libabsl20220623:amd64', 'libaom3:amd64', 'libasound2:amd64', 'libasound2-data', 'libatk1.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libavif16:amd64', 'libb-hooks-op-check-perl:amd64', 'libbio-perl-perl', 'libbio-searchio-hmmer-perl', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcapnp-1.0.1:amd64', 'libcarp-always-perl', 'libclone-perl:amd64', 'libconfig-general-perl', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdata-dumper-simple-perl', 'libdata-stag-perl', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libdbus-1-3:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdevel-callchecker-perl:amd64', 'libdivsufsort3:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdynaloader-functions-perl', 'libedit2:amd64', 'libelf1:amd64', 'libexpat1:amd64', 'libfile-basedir-perl', 'libfont-ttf-perl', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgav1-1:amd64', 'libgd-perl', 'libgd3:amd64', 'libgdbm-compat4:amd64', 'libgdbm6:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgetopt-simple-perl', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphics-colornames-perl', 'libgraphics-colorobject-perl', 'libgraphite2-3:amd64', 'libgsl27:amd64', 'libgslcblas0:amd64', 'libgssapi-krb5-2:amd64', 'libgtk2.0-0:amd64', 'libgtk2.0-common', 'libharfbuzz0b:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libicu72:amd64', 'libio-all-perl', 'libio-string-perl', 'libipc-system-simple-perl', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblist-allutils-perl', 'liblist-someutils-perl', 'liblist-utilsby-perl', 'libllvm17:amd64', 'liblmdb0:amd64', 'libmath-bezier-perl', 'libmath-round-perl', 'libmath-vec-perl', 'libmath-vecstat-perl', 'libmbedcrypto7:amd64', 'libmbedtls14:amd64', 'libmbedx509-1:amd64', 'libmodule-implementation-perl', 'libmodule-runtime-perl', 'libmurmurhash2:amd64', 'libncbi6:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl2:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libnumber-format-perl', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libparams-classify-perl:amd64', 'libparams-validate-perl:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.38:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libproc2-0:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'librav1e0:amd64', 'libreadline8:amd64', 'libreadonly-perl', 'libregexp-common-perl', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libset-intspan-perl', 'libsharpyuv0:amd64', 'libspiffy-perl', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libstatistics-basic-perl', 'libsvg-perl', 'libsvtav1enc1d1:amd64', 'libswiss-perl', 'libtext-format-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3:amd64', 'libtry-tiny-perl', 'libvulkan1:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-libxml-perl', 'libxml-namespacesupport-perl', 'libxml-sax-base-perl', 'libxml-sax-perl', 'libxml-simple-perl', 'libxml2:amd64', 'libxpm4:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libyuv0:amd64', 'libz3-4:amd64', 'mash', 'media-types', 'ncbi-blast+', 'ncbi-data', 'ncbi-tools-bin', 'netbase', 'openjdk-17-jre:amd64', 'openjdk-17-jre-headless:amd64', 'openssl', 'parallel', 'perl', 'perl-modules-5.38', 'procps', 'prodigal', 'prokka', 'python3', 'python3-minimal', 'python3.11', 'python3.11-minimal', 'readline-common', 'samtools', 'sensible-utils', 'shared-mime-info', 'sysstat', 'ucf', 'x11-common', 'xz-utils'] 1m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'dpkg', '--purge', 'plasmidid'] 1m9.6s DUMP: (Reading database ... 5235 files and directories currently installed.) Purging configuration files for plasmidid (1.6.5+dfsg-2) ... 1m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'dpkg', '--purge', 'plasmidid'] 1m9.6s INFO: Running scripts post_purge 1m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/post_purge_exceptions'] 1m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/post_purge_exceptions'] 1m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'dpkg', '--purge', '--pending'] 1m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'dpkg', '--purge', '--pending'] 1m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'dpkg', '--remove', '--pending'] 1m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'dpkg', '--remove', '--pending'] 1m9.6s INFO: Running scripts post_test 1m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/post_test_exceptions'] 1m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'tmp/scripts/post_test_exceptions'] 1m9.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5'] 1m10.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5'] 1m10.7s DEBUG: No broken symlinks as far as we can find. 1m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'dpkg-divert', '--list'] 1m10.7s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 1m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'dpkg-divert', '--list'] 1m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'apt-get', 'clean'] 1m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5', 'apt-get', 'clean'] 1m10.8s DEBUG: Recording chroot state 1m11.5s INFO: PASS: Installation and purging test. 1m11.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5/dev/shm'] 1m11.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5/dev/shm'] 1m11.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5/dev/console'] 1m11.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5/dev/console'] 1m11.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5/dev/ptmx'] 1m11.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5/dev/ptmx'] 1m11.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5/dev/pts'] 1m11.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5/dev/pts'] 1m11.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5/proc'] 1m12.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5/proc'] 1m12.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5'] 1m12.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp7o9uqum5'] 1m12.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp7o9uqum5 1m12.1s INFO: PASS: All tests. 1m12.1s INFO: piuparts run ends. ret=0 End: 2024-02-27 06:20:27 GMT