Start: 2026-08-10 11:40:11 GMT Package: r-bioc-rhdf5 Version: 2.56.0+dfsg-2 Installed-Size: 1193 Maintainer: Debian R Packages Maintainers Architecture: amd64 Depends: r-api-4.0, r-api-bioc-3.23, r-bioc-rhdf5filters (>= 1.15.5), r-bioc-rhdf5lib (>= 1.33.3), libc6 (>= 2.38), libgcc-s1 (>= 3.0), libhdf5-320 (>= 2.1.0), libstdc++6 (>= 5), build-essential, r-pkg-team-core-architecture Description: R Interface to HDF5 Homepage: https://bioconductor.org/packages/rhdf5/ Description-md5: b2b9df24bee3915cfa5bd058add6b6fc Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-rhdf5/r-bioc-rhdf5_2.56.0+dfsg-2_amd64.deb Size: 786976 MD5sum: 4c58b0e370e96f5eadb568dd1cb75e97 SHA256: 61911a7952de63ed3f877986177d4e5d77705145d2ddb8bf7d788eb2f455d010 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt r-bioc-rhdf5=2.56.0+dfsg-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211856~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt r-bioc-rhdf5=2.56.0+dfsg-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 6.1.0-52-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.180-1 (2026-08-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp03bcnozj 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp03bcnozj 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp03bcnozj/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp03bcnozj/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp03bcnozj/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp03bcnozj/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp03bcnozj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp03bcnozj/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp03bcnozj/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp03bcnozj/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp03bcnozj/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp03bcnozj/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp03bcnozj/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp03bcnozj/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmp03bcnozj/tmp/scripts/ 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp03bcnozj/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'apt-get', 'update'] 0m4.5s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.7 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7705 kB] Fetched 18.6 MB in 3s (6204 kB/s) Reading package lists... 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'apt-get', 'update'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'apt-get', '-yf', 'dist-upgrade'] 0m5.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: gcc-16-base libcrypt1 libgcc-s1 libstdc++6 tar 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1861 kB of archives. After this operation, 36.9 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 tar amd64 1.35+dfsg-5 [825 kB] Get:2 http://deb.debian.org/debian sid/main amd64 gcc-16-base amd64 16.2.0-1 [38.0 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 16.2.0-1 [824 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 16.2.0-1 [74.1 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.5.2+20251210-1 [100 kB] Fetched 1861 kB in 0s (14.7 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../tar_1.35+dfsg-5_amd64.deb ... Unpacking tar (1.35+dfsg-5) over (1.35+dfsg-4) ... Setting up tar (1.35+dfsg-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../gcc-16-base_16.2.0-1_amd64.deb ... Unpacking gcc-16-base:amd64 (16.2.0-1) over (16.1.0-3) ... Setting up gcc-16-base:amd64 (16.2.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../libstdc++6_16.2.0-1_amd64.deb ... Unpacking libstdc++6:amd64 (16.2.0-1) over (16.1.0-3) ... Setting up libstdc++6:amd64 (16.2.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../libgcc-s1_16.2.0-1_amd64.deb ... Unpacking libgcc-s1:amd64 (16.2.0-1) over (16.1.0-3) ... Setting up libgcc-s1:amd64 (16.2.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../libcrypt1_1%3a4.5.2+20251210-1_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.5.2+20251210-1) over (1:4.5.1-1+b1) ... Setting up libcrypt1:amd64 (1:4.5.2+20251210-1) ... Processing triggers for libc-bin (2.42-17) ... 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'apt-get', '-yf', 'dist-upgrade'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.4s DUMP: 3242f7ec7c1fa0981dd7ffd0c9ee2fec - 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.4s INFO: Running scripts post_setup 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/post_setup_dummy_users'] 0m7.2s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/post_setup_dummy_users'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/post_setup_forbid_home'] 0m7.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/post_setup_forbid_home'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/post_setup_minimize'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/post_setup_minimize'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/post_setup_zz_backports'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/post_setup_zz_backports'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'apt-get', 'clean'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'apt-get', 'clean'] 0m7.3s DEBUG: Recording chroot state 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.9s DUMP: install ok installed apt apt 3.3.2 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-3 install ok installed bsdutils bsdutils 1:2.42.2-2 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.7 install ok installed findutils findutils 4.11.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-1 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.2 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libblkid1:amd64 libblkid1 2.42.2-2 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.42-17 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.42-17 install ok installed libc6:amd64 libc6 2.42-17 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.3-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.3-1 install ok installed libmd0:amd64 libmd0 1.2.0-2 install ok installed libmount1:amd64 libmount1 2.42.2-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1+b2 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1 install ok installed libselinux1:amd64 libselinux1 3.11-2 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.2-2 install ok installed libssl3t64:amd64 libssl3t64 3.6.3-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-1 install ok installed libsystemd0:amd64 libsystemd0 261.2-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 261.2-1 install ok installed libuuid1:amd64 libuuid1 2.42.2-2 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.2-2 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed mount mount 2.42.2-2 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.3-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed perl-base perl-base 5.42.2-3 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.4.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-5 install ok installed tzdata tzdata 2026c-1 install ok installed util-linux util-linux 2.42.2-2 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'dpkg-divert', '--list'] 0m7.9s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'dpkg-divert', '--list'] 0m7.9s INFO: Running scripts is_testable 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/is_testable_uninstallable'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/is_testable_uninstallable'] 0m8.0s INFO: apt-cache does not know about any of the requested packages 0m8.0s INFO: Running scripts pre_test 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_test_exceptions'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_test_exceptions'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_test_root_password'] 0m8.0s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_test_root_password'] 0m8.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp03bcnozj'] 0m8.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp03bcnozj'] 0m8.7s DEBUG: No broken symlinks as far as we can find. 0m8.7s INFO: Running scripts pre_install 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_install_database-server'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_install_database-server'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_install_exceptions'] 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_install_exceptions'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_install_extras'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_install_extras'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_install_log_alternatives'] 0m8.8s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' dpkg-divert: warning: diverting file '/usr/bin/update-alternatives' from an Essential package with rename is dangerous, use --no-rename 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_install_log_alternatives'] 0m8.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp03bcnozj'] 0m9.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp03bcnozj'] 0m9.5s DEBUG: No broken symlinks as far as we can find. 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'apt-cache', 'policy'] 0m10.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'apt-cache', 'policy'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'apt-cache', 'policy', 'r-bioc-rhdf5'] 0m10.4s DUMP: r-bioc-rhdf5: Installed: (none) Candidate: 2.56.0+dfsg-2 Version table: 2.56.0+dfsg-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'apt-cache', 'policy', 'r-bioc-rhdf5'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'apt-get', '-y', 'install', 'r-bioc-rhdf5=2.56.0+dfsg-2'] 1m0.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu build-essential bzip2 ca-certificates cmake comerr-dev cpp cpp-16 cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu dpkg-dev fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++ g++-16 g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-16 gcc-16-x86-64-linux-gnu gcc-x86-64-linux-gnu hdf5-helpers krb5-multidev libaec-dev libaec0 libarchive13t64 libasan8 libatomic1 libbinutils libblas3 libblosc1 libbrotli-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcom-err2 libctf-nobfd0 libctf0 libcurl4-openssl-dev libcurl4t64 libdatrie1 libdeflate0 libdpkg-perl libevent-2.1-7t64 libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgcc-16-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls28-dev libgnutls30t64 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libharfbuzz0b libhdf5-320 libhdf5-cpp-320 libhdf5-dev libhdf5-fortran-320 libhdf5-hl-320 libhdf5-hl-cpp-320 libhdf5-hl-fortran-320 libhwasan0 libice6 libicu78 libidn2-0 libidn2-dev libisl23 libitm1 libjansson4 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjsoncpp26 libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 liblapack3 libldap-dev libldap2 liblerc4 liblsan0 libmpc3 libmpfr6 libncursesw6 libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libngtcp2-16 libngtcp2-crypto-ossl-dev libngtcp2-crypto-ossl0 libngtcp2-dev libp11-kit-dev libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libperl5.42 libpixman-1-0 libpkgconf7 libpng16-16t64 libproc2-1 libpsl-dev libpsl5t64 libquadmath0 libreadline8t64 librhash1 librtmp-dev librtmp1 libsasl2-2 libsasl2-modules-db libsframe3 libsharpyuv0 libsm6 libsnappy1v5 libssh2-1-dev libssh2-1t64 libssl-dev libstdc++-16-dev libsz2 libtasn1-6 libtasn1-6-dev libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunbound8 libunistring-dev libunistring5 libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2-16 libxrender1 libxss1 libxt6t64 libzstd-dev linux-libc-dev make nettle-dev openssl patch perl perl-modules-5.42 pkgconf pkgconf-bin procps r-base-core r-bioc-biocgenerics r-bioc-biocmake r-bioc-dir.expiry r-bioc-rhdf5filters r-bioc-rhdf5lib r-cran-filelock r-cran-generics r-pkg-team-core-architecture readline-common rpcsvc-proto sensible-utils ucf unzip x11-common xdg-utils xz-utils zip zlib1g-dev Suggested packages: binutils-doc gprofng-gui binutils-gold bzip2-doc cmake-doc cmake-format elpa-cmake-mode ninja-build doc-base cpp-doc gcc-16-locales cpp-16-doc debian-keyring debian-tag2upload-keyring g++-multilib g++-16-multilib gcc-16-doc gcc-multilib manpages-dev autoconf automake libtool flex bison gdb gcc-doc gcc-16-multilib gdb-x86-64-linux-gnu krb5-doc lrzip libc-devtools glibc-doc libcurl4-doc libidn-dev sq | sqop | rsop | gosop | pgpainless-cli | gpg-sq | gnupg git bzr gdbm-l10n low-memory-monitor gmp-doc libgmp10-doc libmpfr-dev dns-root-data gnutls-bin gnutls-doc krb5-user libhdf5-doc libnghttp2-doc p11-kit-doc libssl-doc libstdc++-16-doc tcl8.6 tk8.6 make-doc ed diffutils-doc perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html readline-doc Recommended packages: fakeroot sq | sqop | rsop | gosop | pgpainless-cli | gpg-sq | gnupg libalgorithm-merge-perl manpages manpages-dev libfile-fcntllock-perl liblocale-gettext-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules libtasn1-doc netbase psmisc linux-sysctl-defaults r-recommended r-base-dev r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu build-essential bzip2 ca-certificates cmake comerr-dev cpp cpp-16 cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu dpkg-dev fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++ g++-16 g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-16 gcc-16-x86-64-linux-gnu gcc-x86-64-linux-gnu hdf5-helpers krb5-multidev libaec-dev libaec0 libarchive13t64 libasan8 libatomic1 libbinutils libblas3 libblosc1 libbrotli-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcom-err2 libctf-nobfd0 libctf0 libcurl4-openssl-dev libcurl4t64 libdatrie1 libdeflate0 libdpkg-perl libevent-2.1-7t64 libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgcc-16-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls28-dev libgnutls30t64 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libharfbuzz0b libhdf5-320 libhdf5-cpp-320 libhdf5-dev libhdf5-fortran-320 libhdf5-hl-320 libhdf5-hl-cpp-320 libhdf5-hl-fortran-320 libhwasan0 libice6 libicu78 libidn2-0 libidn2-dev libisl23 libitm1 libjansson4 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjsoncpp26 libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 liblapack3 libldap-dev libldap2 liblerc4 liblsan0 libmpc3 libmpfr6 libncursesw6 libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libngtcp2-16 libngtcp2-crypto-ossl-dev libngtcp2-crypto-ossl0 libngtcp2-dev libp11-kit-dev libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libperl5.42 libpixman-1-0 libpkgconf7 libpng16-16t64 libproc2-1 libpsl-dev libpsl5t64 libquadmath0 libreadline8t64 librhash1 librtmp-dev librtmp1 libsasl2-2 libsasl2-modules-db libsframe3 libsharpyuv0 libsm6 libsnappy1v5 libssh2-1-dev libssh2-1t64 libssl-dev libstdc++-16-dev libsz2 libtasn1-6 libtasn1-6-dev libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunbound8 libunistring-dev libunistring5 libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2-16 libxrender1 libxss1 libxt6t64 libzstd-dev linux-libc-dev make nettle-dev openssl patch perl perl-modules-5.42 pkgconf pkgconf-bin procps r-base-core r-bioc-biocgenerics r-bioc-biocmake r-bioc-dir.expiry r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-cran-filelock r-cran-generics r-pkg-team-core-architecture readline-common rpcsvc-proto sensible-utils ucf unzip x11-common xdg-utils xz-utils zip zlib1g-dev 0 upgraded, 207 newly installed, 0 to remove and 0 not upgraded. Need to get 386 MB of archives. After this operation, 1319 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.8.2-1 [121 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libproc2-1 amd64 2:4.0.6-3 [69.4 kB] Get:4 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.6-3 [983 kB] Get:5 http://deb.debian.org/debian sid/main amd64 readline-common all 8.3-4 [74.8 kB] Get:6 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:7 http://deb.debian.org/debian sid/main amd64 bzip2 amd64 1.0.8-6+b2 [40.4 kB] Get:8 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.6.3-1 [1522 kB] Get:9 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20260601 [134 kB] Get:10 http://deb.debian.org/debian sid/main amd64 perl-modules-5.42 all 5.42.2-3 [3210 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.26-1+b2 [77.7 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.26-1+b2 [52.0 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libperl5.42 amd64 5.42.2-3 [4245 kB] Get:14 http://deb.debian.org/debian sid/main amd64 perl amd64 5.42.2-3 [265 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libtext-charwidth-perl amd64 0.04-12+b1 [9344 B] Get:16 http://deb.debian.org/debian sid/main amd64 libtext-wrapi18n-perl all 0.06-11 [7788 B] Get:17 http://deb.debian.org/debian sid/main amd64 ucf all 3.0056 [47.1 kB] Get:18 http://deb.debian.org/debian sid/main amd64 xz-utils amd64 5.8.3-1 [740 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libsframe3 amd64 2.47-2 [84.8 kB] Get:20 http://deb.debian.org/debian sid/main amd64 binutils-common amd64 2.47-2 [2685 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libbinutils amd64 2.47-2 [536 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libgprofng0 amd64 2.47-2 [820 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libctf-nobfd0 amd64 2.47-2 [160 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libctf0 amd64 2.47-2 [91.7 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libjansson4 amd64 2.15.1-1 [65.6 kB] Get:26 http://deb.debian.org/debian sid/main amd64 binutils-x86-64-linux-gnu amd64 2.47-2 [1072 kB] Get:27 http://deb.debian.org/debian sid/main amd64 binutils amd64 2.47-2 [282 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.42-17 [38.1 kB] Get:29 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 7.1.7-1 [2038 kB] Get:30 http://deb.debian.org/debian sid/main amd64 rpcsvc-proto amd64 1.4.4-1 [63.4 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.42-17 [1991 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libisl23 amd64 0.28-1 [667 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libmpfr6 amd64 4.2.2-3 [729 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libmpc3 amd64 1.3.1-3 [52.2 kB] Get:35 http://deb.debian.org/debian sid/main amd64 cpp-16-x86-64-linux-gnu amd64 16.2.0-1 [76.1 MB] Get:36 http://deb.debian.org/debian sid/main amd64 cpp-16 amd64 16.2.0-1 [1276 B] Get:37 http://deb.debian.org/debian sid/main amd64 cpp-x86-64-linux-gnu amd64 4:16.1.0-3 [4472 B] Get:38 http://deb.debian.org/debian sid/main amd64 cpp amd64 4:16.1.0-3 [1568 B] Get:39 http://deb.debian.org/debian sid/main amd64 libcc1-0 amd64 16.2.0-1 [46.2 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 16.2.0-1 [151 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 16.2.0-1 [27.0 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 16.2.0-1 [10.4 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 16.2.0-1 [2889 kB] Get:44 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 16.2.0-1 [1280 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 16.2.0-1 [2573 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 16.2.0-1 [1136 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 16.2.0-1 [1580 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 16.2.0-1 [148 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libgcc-16-dev amd64 16.2.0-1 [2782 kB] Get:50 http://deb.debian.org/debian sid/main amd64 gcc-16-x86-64-linux-gnu amd64 16.2.0-1 [87.1 MB] Get:51 http://deb.debian.org/debian sid/main amd64 gcc-16 amd64 16.2.0-1 [532 kB] Get:52 http://deb.debian.org/debian sid/main amd64 gcc-x86-64-linux-gnu amd64 4:16.1.0-3 [1432 B] Get:53 http://deb.debian.org/debian sid/main amd64 gcc amd64 4:16.1.0-3 [5148 B] Get:54 http://deb.debian.org/debian sid/main amd64 libstdc++-16-dev amd64 16.2.0-1 [2754 kB] Get:55 http://deb.debian.org/debian sid/main amd64 g++-16-x86-64-linux-gnu amd64 16.2.0-1 [81.9 MB] Get:56 http://deb.debian.org/debian sid/main amd64 g++-16 amd64 16.2.0-1 [33.9 kB] Get:57 http://deb.debian.org/debian sid/main amd64 g++-x86-64-linux-gnu amd64 4:16.1.0-3 [1196 B] Get:58 http://deb.debian.org/debian sid/main amd64 g++ amd64 4:16.1.0-3 [1340 B] Get:59 http://deb.debian.org/debian sid/main amd64 make amd64 4.4.1-3 [463 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libdpkg-perl all 1.23.7 [669 kB] Get:61 http://deb.debian.org/debian sid/main amd64 patch amd64 2.8-2 [134 kB] Get:62 http://deb.debian.org/debian sid/main amd64 dpkg-dev all 1.23.7 [1318 kB] Get:63 http://deb.debian.org/debian sid/main amd64 build-essential amd64 12.12 [4624 B] Get:64 http://deb.debian.org/debian sid/main amd64 libxml2-16 amd64 2.15.3+dfsg-1 [642 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libarchive13t64 amd64 3.8.9-1 [364 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.17.0-1 [68.1 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libngtcp2-16 amd64 1.24.0-1 [145 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.2.0-3 [320 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.22.1-3 [31.1 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.4-1 [19.2 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.22.1-3 [79.0 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:73 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.22.1-3 [335 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.22.1-3 [137 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-5 [109 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-11 [17.2 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-11 [55.2 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libldap2 amd64 2.6.13+dfsg-1+b1 [189 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.70.0-1 [92.7 kB] Get:81 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-ossl0 amd64 1.24.0-1 [26.5 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.23.1-1 [61.0 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-5 [245 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.21.0-2 [422 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libjsoncpp26 amd64 1.9.8-2 [87.5 kB] Get:86 http://deb.debian.org/debian sid/main amd64 librhash1 amd64 1.4.6-1.1+b1 [135 kB] Get:87 http://deb.debian.org/debian sid/main amd64 libuv1t64 amd64 1.52.1-4 [158 kB] Get:88 http://deb.debian.org/debian sid/main amd64 cmake amd64 4.3.4-1 [16.2 MB] Get:89 http://deb.debian.org/debian sid/main amd64 comerr-dev amd64 2.1-1.47.4-1 [50.9 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.58-1 [289 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.14.3+dfsg-2 [492 kB] Get:92 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-9 [488 kB] Get:93 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-9 [840 kB] Get:94 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.17.1-5 [56.1 kB] Get:95 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.17.1-5 [132 kB] Get:96 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.17.1-5 [191 kB] Get:97 http://deb.debian.org/debian sid/main amd64 hdf5-helpers amd64 2.1.0+repack-1 [21.0 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libgssrpc4t64 amd64 1.22.1-3 [58.3 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libkadm5clnt-mit12 amd64 1.22.1-3 [40.3 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libkdb5-10t64 amd64 1.22.1-3 [41.3 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libkadm5srv-mit12 amd64 1.22.1-3 [54.1 kB] Get:102 http://deb.debian.org/debian sid/main amd64 krb5-multidev amd64 1.22.1-3 [125 kB] Get:103 http://deb.debian.org/debian sid/main amd64 libaec0 amd64 1.1.7-1 [22.3 kB] Get:104 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.1.7-1 [18.7 kB] Get:105 http://deb.debian.org/debian sid/main amd64 libaec-dev amd64 1.1.7-1 [25.2 kB] Get:106 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-8 [206 kB] Get:107 http://deb.debian.org/debian sid/main amd64 libsnappy1v5 amd64 1.2.2-2+b2 [29.0 kB] Get:108 http://deb.debian.org/debian sid/main amd64 libblosc1 amd64 1.21.5+ds-2+b2 [48.0 kB] Get:109 http://deb.debian.org/debian sid/main amd64 libbrotli-dev amd64 1.2.0-3 [324 kB] Get:110 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.46.4-1+b2 [259 kB] Get:111 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.11-1+b2 [20.7 kB] Get:112 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.5-2+b1 [28.2 kB] Get:113 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB] Get:114 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.13-1 [346 kB] Get:115 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.13-1 [829 kB] Get:116 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-2+b2 [115 kB] Get:117 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-2+b2 [105 kB] Get:118 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b4 [50.7 kB] Get:119 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.12-1+b2 [27.7 kB] Get:120 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.4-3+b1 [543 kB] Get:121 http://deb.debian.org/debian sid/main amd64 libidn2-dev amd64 2.3.8-5 [102 kB] Get:122 http://deb.debian.org/debian sid/main amd64 libkrb5-dev amd64 1.22.1-3 [14.0 kB] Get:123 http://deb.debian.org/debian sid/main amd64 libldap-dev amd64 2.6.13+dfsg-1+b1 [308 kB] Get:124 http://deb.debian.org/debian sid/main amd64 libpkgconf7 amd64 2.5.1-4 [47.8 kB] Get:125 http://deb.debian.org/debian sid/main amd64 pkgconf-bin amd64 2.5.1-4 [35.9 kB] Get:126 http://deb.debian.org/debian sid/main amd64 pkgconf amd64 2.5.1-4 [33.6 kB] Get:127 http://deb.debian.org/debian sid/main amd64 libnghttp2-dev amd64 1.70.0-1 [131 kB] Get:128 http://deb.debian.org/debian sid/main amd64 libnghttp3-dev amd64 1.17.0-1 [96.3 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-ossl-dev amd64 1.24.0-1 [27.5 kB] Get:130 http://deb.debian.org/debian sid/main amd64 libngtcp2-dev amd64 1.24.0-1 [204 kB] Get:131 http://deb.debian.org/debian sid/main amd64 libunistring-dev amd64 1.4.2-1 [651 kB] Get:132 http://deb.debian.org/debian sid/main amd64 libpsl-dev amd64 0.23.1-1 [30.0 kB] Get:133 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.7.1-2 [30.5 kB] Get:134 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.26.4-1 [471 kB] Get:135 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.21.0-2+b1 [49.3 kB] Get:136 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.13-1 [1546 kB] Get:137 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.6-1 [60.3 kB] Get:138 http://deb.debian.org/debian sid/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5+b2 [328 kB] Get:139 http://deb.debian.org/debian sid/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5+b2 [641 kB] Get:140 http://deb.debian.org/debian sid/main amd64 libevent-2.1-7t64 amd64 2.1.13-stable-1 [183 kB] Get:141 http://deb.debian.org/debian sid/main amd64 libunbound8 amd64 1.26.0-1 [661 kB] Get:142 http://deb.debian.org/debian sid/main amd64 libgnutls-dane0t64 amd64 3.8.13-1 [496 kB] Get:143 http://deb.debian.org/debian sid/main amd64 libp11-kit-dev amd64 0.26.4-1 [225 kB] Get:144 http://deb.debian.org/debian sid/main amd64 libtasn1-6-dev amd64 4.21.0-2+b1 [98.6 kB] Get:145 http://deb.debian.org/debian sid/main amd64 nettle-dev amd64 3.10.2-1+b1 [1321 kB] Get:146 http://deb.debian.org/debian sid/main amd64 libgnutls28-dev amd64 3.8.13-1 [1479 kB] Get:147 http://deb.debian.org/debian sid/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.2-3 [918 kB] Get:148 http://deb.debian.org/debian sid/main amd64 librtmp-dev amd64 2.6-1 [69.7 kB] Get:149 http://deb.debian.org/debian sid/main amd64 libssl-dev amd64 3.6.3-1 [3025 kB] Get:150 http://deb.debian.org/debian sid/main amd64 libssh2-1-dev amd64 1.11.1-5 [393 kB] Get:151 http://deb.debian.org/debian sid/main amd64 libzstd-dev amd64 1.5.7+dfsg-4 [371 kB] Get:152 http://deb.debian.org/debian sid/main amd64 libcurl4-openssl-dev amd64 8.21.0-2 [550 kB] Get:153 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.14-2 [39.1 kB] Get:154 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.25-1 [48.0 kB] Get:155 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.16-5+b1 [26.2 kB] Get:156 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 16.2.0-1 [878 kB] Get:157 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.88.3-2 [1536 kB] Get:158 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.15-2 [75.8 kB] Get:159 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 12.3.2-2+b2 [513 kB] Get:160 http://deb.debian.org/debian sid/main amd64 libhdf5-320 amd64 2.1.0+repack-1 [2168 kB] Get:161 http://deb.debian.org/debian sid/main amd64 libhdf5-cpp-320 amd64 2.1.0+repack-1 [137 kB] Ign:161 http://deb.debian.org/debian sid/main amd64 libhdf5-cpp-320 amd64 2.1.0+repack-1 Get:162 http://deb.debian.org/debian sid/main amd64 libhdf5-fortran-320 amd64 2.1.0+repack-1 [116 kB] Get:163 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-320 amd64 2.1.0+repack-1 [74.2 kB] Get:164 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-fortran-320 amd64 2.1.0+repack-1 [43.3 kB] Get:165 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-cpp-320 amd64 2.1.0+repack-1 [20.7 kB] Get:166 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:3.1.3-4 [213 kB] Get:167 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo-dev amd64 1:3.1.3-4 [356 kB] Get:168 http://deb.debian.org/debian sid/main amd64 libjpeg-dev amd64 1:3.1.3-4 [78.8 kB] Get:169 http://deb.debian.org/debian sid/main amd64 libhdf5-dev amd64 2.1.0+repack-1 [4235 kB] Get:170 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+26 [217 kB] Get:171 http://deb.debian.org/debian sid/main amd64 libice6 amd64 2:1.1.1-1+b2 [66.8 kB] Get:161 http://deb.debian.org/debian sid/main amd64 libhdf5-cpp-320 amd64 2.1.0+repack-1 [137 kB] Get:172 http://deb.debian.org/debian sid/main amd64 libicu78 amd64 78.3-2 [10.0 MB] Get:173 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b3 [32.2 kB] Get:174 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-8 [2548 kB] Get:175 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.2.0+ds-1 [203 kB] Get:176 http://deb.debian.org/debian sid/main amd64 libthai-data all 0.1.30-3 [172 kB] Get:177 http://deb.debian.org/debian sid/main amd64 libthai0 amd64 0.1.30-3 [51.7 kB] Get:178 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.58.0-1 [225 kB] Get:179 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.58.0-1 [53.1 kB] Get:180 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.58.0-1 [34.2 kB] Get:181 http://deb.debian.org/debian sid/main amd64 libpaper2 amd64 2.2.5-0.4 [16.6 kB] Get:182 http://deb.debian.org/debian sid/main amd64 libpaper-utils amd64 2.2.5-0.4 [15.8 kB] Get:183 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:184 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.5.0-0.1+b2 [115 kB] Get:185 http://deb.debian.org/debian sid/main amd64 libsm6 amd64 2:1.2.6-1+b2 [37.9 kB] Get:186 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.18+dfsg-1 [1053 kB] Get:187 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.5.0-0.1+b2 [335 kB] Get:188 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.7.2-1 [383 kB] Get:189 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.7+ds-1 [10.0 kB] Get:190 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.7+ds-1 [82.9 kB] Get:191 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b5 [54.8 kB] Get:192 http://deb.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1+b4 [17.0 kB] Get:193 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.18-1 [801 kB] Get:194 http://deb.debian.org/debian sid/main amd64 libxt6t64 amd64 1:1.2.1-1.3+b2 [191 kB] Get:195 http://deb.debian.org/debian sid/main amd64 zip amd64 3.0-16 [239 kB] Get:196 http://deb.debian.org/debian sid/main amd64 unzip amd64 6.0-30 [173 kB] Get:197 http://deb.debian.org/debian sid/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:198 http://deb.debian.org/debian sid/main amd64 r-base-core amd64 4.6.1-4 [28.4 MB] Get:199 http://deb.debian.org/debian sid/main amd64 r-cran-generics all 0.1.4-1 [84.2 kB] Get:200 http://deb.debian.org/debian sid/main amd64 r-pkg-team-core-architecture amd64 20260707 [4764 B] Get:201 http://deb.debian.org/debian sid/main amd64 r-bioc-biocgenerics all 0.58.1-1 [649 kB] Get:202 http://deb.debian.org/debian sid/main amd64 r-cran-filelock amd64 1.0.3-2 [27.9 kB] Get:203 http://deb.debian.org/debian sid/main amd64 r-bioc-dir.expiry all 1.20.0+dfsg-1 [32.5 kB] Get:204 http://deb.debian.org/debian sid/main amd64 r-bioc-biocmake all 1.4.0+dfsg-1 [36.6 kB] Get:205 http://deb.debian.org/debian sid/main amd64 r-bioc-rhdf5lib amd64 2.0.0+dfsg-1 [106 kB] Get:206 http://deb.debian.org/debian sid/main amd64 r-bioc-rhdf5filters amd64 1.24.1+dfsg-1 [142 kB] Get:207 http://deb.debian.org/debian sid/main amd64 r-bioc-rhdf5 amd64 2.56.0+dfsg-2 [787 kB] Preconfiguring packages ... Fetched 386 MB in 27s (14.4 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4980 files and directories currently installed.) Preparing to unpack .../000-libexpat1_2.8.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.8.2-1) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../001-libncursesw6_6.6+20260608-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.6+20260608-2) ... Selecting previously unselected package libproc2-1:amd64. Preparing to unpack .../002-libproc2-1_2%3a4.0.6-3_amd64.deb ... Unpacking libproc2-1:amd64 (2:4.0.6-3) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.6-3_amd64.deb ... Unpacking procps (2:4.0.6-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../004-readline-common_8.3-4_all.deb ... Unpacking readline-common (8.3-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../005-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package bzip2. Preparing to unpack .../006-bzip2_1.0.8-6+b2_amd64.deb ... Unpacking bzip2 (1.0.8-6+b2) ... Selecting previously unselected package openssl. Preparing to unpack .../007-openssl_3.6.3-1_amd64.deb ... Unpacking openssl (3.6.3-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../008-ca-certificates_20260601_all.deb ... Unpacking ca-certificates (20260601) ... Selecting previously unselected package perl-modules-5.42. Preparing to unpack .../009-perl-modules-5.42_5.42.2-3_all.deb ... Unpacking perl-modules-5.42 (5.42.2-3) ... Selecting previously unselected package libgdbm6t64:amd64. Preparing to unpack .../010-libgdbm6t64_1.26-1+b2_amd64.deb ... Unpacking libgdbm6t64:amd64 (1.26-1+b2) ... Selecting previously unselected package libgdbm-compat4t64:amd64. Preparing to unpack .../011-libgdbm-compat4t64_1.26-1+b2_amd64.deb ... Unpacking libgdbm-compat4t64:amd64 (1.26-1+b2) ... Selecting previously unselected package libperl5.42:amd64. Preparing to unpack .../012-libperl5.42_5.42.2-3_amd64.deb ... Unpacking libperl5.42:amd64 (5.42.2-3) ... Selecting previously unselected package perl. Preparing to unpack .../013-perl_5.42.2-3_amd64.deb ... Unpacking perl (5.42.2-3) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../014-libtext-charwidth-perl_0.04-12+b1_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-12+b1) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../015-libtext-wrapi18n-perl_0.06-11_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-11) ... Selecting previously unselected package ucf. Preparing to unpack .../016-ucf_3.0056_all.deb ... Moving old data out of the way Unpacking ucf (3.0056) ... Selecting previously unselected package xz-utils. Preparing to unpack .../017-xz-utils_5.8.3-1_amd64.deb ... Unpacking xz-utils (5.8.3-1) ... Selecting previously unselected package libsframe3:amd64. Preparing to unpack .../018-libsframe3_2.47-2_amd64.deb ... Unpacking libsframe3:amd64 (2.47-2) ... Selecting previously unselected package binutils-common:amd64. Preparing to unpack .../019-binutils-common_2.47-2_amd64.deb ... Unpacking binutils-common:amd64 (2.47-2) ... Selecting previously unselected package libbinutils:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package libsharpyuv0:amd64. Preparing to unpack .../183-libsharpyuv0_1.5.0-0.1+b2_amd64.deb ... Unpacking libsharpyuv0:amd64 (1.5.0-0.1+b2) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../184-libsm6_2%3a1.2.6-1+b2_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.6-1+b2) ... Selecting previously unselected package libtcl8.6:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.7+ds-1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../190-libxft2_2.3.6-1+b5_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b5) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../191-libxss1_1%3a1.2.3-1+b4_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1+b4) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../192-libtk8.6_8.6.18-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.18-1) ... Selecting previously unselected package libxt6t64:amd64. Preparing to unpack .../193-libxt6t64_1%3a1.2.1-1.3+b2_amd64.deb ... Unpacking libxt6t64:amd64 (1:1.2.1-1.3+b2) ... 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Setting up libtirpc-common (1.3.7+ds-1) ... Setting up unzip (6.0-30) ... Setting up libbrotli1:amd64 (1.2.0-3) ... Setting up libpkgconf7:amd64 (2.5.1-4) ... Setting up libuv1t64:amd64 (1.52.1-4) ... Setting up binutils-common:amd64 (2.47-2) ... Setting up x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:amd64 (1.70.0-1) ... Setting up libsframe3:amd64 (2.47-2) ... Setting up libdeflate0:amd64 (1.25-1) ... Setting up linux-libc-dev (7.1.7-1) ... Setting up libctf-nobfd0:amd64 (2.47-2) ... Setting up libevent-2.1-7t64:amd64 (2.1.13-stable-1) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b2) ... Setting up libcom-err2:amd64 (1.47.4-1) ... Setting up libgomp1:amd64 (16.2.0-1) ... Setting up bzip2 (1.0.8-6+b2) ... Setting up libtext-wrapi18n-perl (0.06-11) ... Setting up libjbig0:amd64 (2.1-6.1+b3) ... Setting up libaec0:amd64 (1.1.7-1) ... Setting up libjansson4:amd64 (2.15.1-1) ... 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Setting up libhwasan0:amd64 (16.2.0-1) ... Setting up libtiff6:amd64 (4.7.2-1) ... Setting up libasan8:amd64 (16.2.0-1) ... Setting up procps (2:4.0.6-3) ... Setting up libblosc1:amd64 (1.21.5+ds-2+b2) ... Setting up libtasn1-6:amd64 (4.21.0-2+b1) ... Setting up libx11-6:amd64 (2:1.8.13-1) ... Setting up libthai-data (0.1.30-3) ... Setting up libngtcp2-16:amd64 (1.24.0-1) ... Setting up librhash1:amd64 (1.4.6-1.1+b1) ... Setting up libkrb5-3:amd64 (1.22.1-3) ... Setting up libpaper2:amd64 (2.2.5-0.4) ... Setting up libssh2-1t64:amd64 (1.11.1-5) ... Setting up libtsan2:amd64 (16.2.0-1) ... Setting up libbinutils:amd64 (2.47-2) ... Setting up perl-modules-5.42 (5.42.2-3) ... Setting up libisl23:amd64 (0.28-1) ... Setting up libc-dev-bin (2.42-17) ... Setting up libtasn1-6-dev:amd64 (4.21.0-2+b1) ... Setting up openssl (3.6.3-1) ... Setting up libarchive13t64:amd64 (3.8.9-1) ... Setting up readline-common (8.3-4) ... Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libcc1-0:amd64 (16.2.0-1) ... Setting up libldap2:amd64 (2.6.13+dfsg-1+b1) ... Setting up libbrotli-dev:amd64 (1.2.0-3) ... Setting up liblsan0:amd64 (16.2.0-1) ... Setting up libsz2:amd64 (1.1.7-1) ... Setting up libitm1:amd64 (16.2.0-1) ... Setting up libctf0:amd64 (2.47-2) ... Setting up libunistring-dev:amd64 (1.4.2-1) ... Setting up libice6:amd64 (2:1.1.1-1+b2) ... Setting up liblapack3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-5+b2) ... Setting up nettle-dev:amd64 (3.10.2-1+b1) ... Setting up libxrender1:amd64 (1:0.9.12-1+b2) ... Setting up libgcc-16-dev:amd64 (16.2.0-1) ... Setting up fontconfig-config (2.17.1-5) ... Setting up libaec-dev:amd64 (1.1.7-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b4) ... Setting up libidn2-0:amd64 (2.3.8-5) ... Setting up libperl5.42:amd64 (5.42.2-3) ... Setting up libpaper-utils (2.2.5-0.4) ... Setting up libngtcp2-dev:amd64 (1.24.0-1) ... Setting up pkgconf:amd64 (2.5.1-4) ... Setting up libthai0:amd64 (0.1.30-3) ... Setting up ca-certificates (20260601) ... Updating certificates in /etc/ssl/certs... 121 added, 0 removed; done. Setting up perl (5.42.2-3) ... Setting up libglib2.0-0t64:amd64 (2.88.3-2) ... No schema files found: doing nothing. Setting up libgprofng0:amd64 (2.47-2) ... Setting up libfreetype6:amd64 (2.14.3+dfsg-2) ... Setting up libldap-dev:amd64 (2.6.13+dfsg-1+b1) ... Setting up libp11-kit0:amd64 (0.26.4-1) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-3) ... Setting up ucf (3.0056) ... Setting up libidn2-dev:amd64 (2.3.8-5) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Setting up libdpkg-perl (1.23.7) ... Setting up libngtcp2-crypto-ossl-dev:amd64 (1.24.0-1) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up libc6-dev:amd64 (2.42-17) ... Setting up libharfbuzz0b:amd64 (12.3.2-2+b2) ... Setting up cpp-16-x86-64-linux-gnu (16.2.0-1) ... Setting up libxss1:amd64 (1:1.2.3-1+b4) ... Setting up libfontconfig1:amd64 (2.17.1-5) ... Setting up libhdf5-320:amd64 (2.1.0+repack-1) ... Setting up libsm6:amd64 (2:1.2.6-1+b2) ... Setting up libp11-kit-dev:amd64 (0.26.4-1) ... Setting up binutils-x86-64-linux-gnu (2.47-2) ... Setting up cpp-x86-64-linux-gnu (4:16.1.0-3) ... Setting up libgnutls30t64:amd64 (3.8.13-1) ... Setting up libnghttp2-dev:amd64 (1.70.0-1) ... Setting up fontconfig (2.17.1-5) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1+b5) ... Setting up libhdf5-cpp-320:amd64 (2.1.0+repack-1) ... Setting up libtirpc3t64:amd64 (1.3.7+ds-1) ... Setting up libtk8.6:amd64 (8.6.18-1) ... Setting up libpango-1.0-0:amd64 (1.58.0-1) ... Setting up libpsl5t64:amd64 (0.23.1-1) ... Setting up gcc-16-x86-64-linux-gnu (16.2.0-1) ... Setting up binutils (2.47-2) ... Setting up libcairo2:amd64 (1.18.4-3+b1) ... Setting up dpkg-dev (1.23.7) ... Setting up libpsl-dev:amd64 (0.23.1-1) ... Setting up libgnutls-dane0t64:amd64 (3.8.13-1) ... Setting up libjpeg62-turbo-dev:amd64 (1:3.1.3-4) ... Setting up librtmp1:amd64 (2.6-1) ... Setting up libgssrpc4t64:amd64 (1.22.1-3) ... Setting up libstdc++-16-dev:amd64 (16.2.0-1) ... Setting up libxt6t64:amd64 (1:1.2.1-1.3+b2) ... Setting up comerr-dev:amd64 (2.1-1.47.4-1) ... Setting up g++-16-x86-64-linux-gnu (16.2.0-1) ... Setting up libhdf5-hl-320:amd64 (2.1.0+repack-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.2-3) ... Setting up libhdf5-fortran-320:amd64 (2.1.0+repack-1) ... Setting up cpp-16 (16.2.0-1) ... Setting up libpangoft2-1.0-0:amd64 (1.58.0-1) ... Setting up libpangocairo-1.0-0:amd64 (1.58.0-1) ... Setting up libkadm5clnt-mit12:amd64 (1.22.1-3) ... Setting up libgnutls28-dev:amd64 (3.8.13-1) ... Setting up gcc-x86-64-linux-gnu (4:16.1.0-3) ... Setting up libcurl4t64:amd64 (8.21.0-2) ... Setting up libkdb5-10t64:amd64 (1.22.1-3) ... Setting up libjpeg-dev:amd64 (1:3.1.3-4) ... Setting up gcc-16 (16.2.0-1) ... Setting up libhdf5-hl-fortran-320:amd64 (2.1.0+repack-1) ... Setting up r-base-core (4.6.1-4) ... Creating config file /etc/R/Renviron with new version Setting up librtmp-dev:amd64 (2.6-1) ... Setting up libhdf5-hl-cpp-320:amd64 (2.1.0+repack-1) ... Setting up libssh2-1-dev:amd64 (1.11.1-5) ... Setting up g++-16 (16.2.0-1) ... Setting up cpp (4:16.1.0-3) ... Setting up libkadm5srv-mit12:amd64 (1.22.1-3) ... Setting up g++-x86-64-linux-gnu (4:16.1.0-3) ... Setting up cmake (4.3.4-1) ... Setting up r-cran-filelock (1.0.3-2) ... Setting up krb5-multidev:amd64 (1.22.1-3) ... Setting up r-cran-generics (0.1.4-1) ... Setting up gcc (4:16.1.0-3) ... Setting up libkrb5-dev:amd64 (1.22.1-3) ... Setting up libcurl4-openssl-dev:amd64 (8.21.0-2) ... Setting up libhdf5-dev (2.1.0+repack-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5_serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/cmake/hdf5_serial to provide /usr/lib/x86_64-linux-gnu/cmake/hdf5 (hdf5.cmake) in auto mode Setting up g++ (4:16.1.0-3) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up build-essential (12.12) ... Setting up r-bioc-biocgenerics (0.58.1-1) ... Setting up r-bioc-dir.expiry (1.20.0+dfsg-1) ... Setting up r-bioc-biocmake (1.4.0+dfsg-1) ... Setting up r-bioc-rhdf5lib (2.0.0+dfsg-1) ... Setting up r-bioc-rhdf5filters (1.24.1+dfsg-1) ... Setting up r-bioc-rhdf5 (2.56.0+dfsg-2) ... Processing triggers for libc-bin (2.42-17) ... Processing triggers for ca-certificates (20260601) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'apt-get', '-y', 'install', 'r-bioc-rhdf5=2.56.0+dfsg-2'] 1m0.3s INFO: Running scripts post_install 1m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/post_install_exceptions'] 1m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/post_install_exceptions'] 1m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/post_install_log_alternatives'] 1m0.4s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=libblas3: piuparts=r-bioc-rhdf5=2.56.0+dfsg-2: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so.3 libblas.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 10 LOG-ALTERNATIVES: dpkg=xz-utils: piuparts=r-bioc-rhdf5=2.56.0+dfsg-2: /usr/bin/update-alternatives --install /usr/bin/lzma lzma /usr/bin/xz 20 --slave /usr/share/man/man1/lzma.1.gz lzma.1.gz /usr/share/man/man1/xz.1.gz --slave /usr/bin/unlzma unlzma /usr/bin/unxz --slave /usr/share/man/man1/unlzma.1.gz unlzma.1.gz /usr/share/man/man1/unxz.1.gz --slave /usr/bin/lzcat lzcat /usr/bin/xzcat --slave /usr/share/man/man1/lzcat.1.gz lzcat.1.gz /usr/share/man/man1/xzcat.1.gz --slave /usr/bin/lzmore lzmore /usr/bin/xzmore --slave /usr/share/man/man1/lzmore.1.gz lzmore.1.gz /usr/share/man/man1/xzmore.1.gz --slave /usr/bin/lzless lzless /usr/bin/xzless --slave /usr/share/man/man1/lzless.1.gz lzless.1.gz /usr/share/man/man1/xzless.1.gz --slave /usr/bin/lzdiff lzdiff /usr/bin/xzdiff --slave /usr/share/man/man1/lzdiff.1.gz lzdiff.1.gz /usr/share/man/man1/xzdiff.1.gz --slave /usr/bin/lzcmp lzcmp /usr/bin/xzcmp --slave /usr/share/man/man1/lzcmp.1.gz lzcmp.1.gz /usr/share/man/man1/xzcmp.1.gz --slave /usr/bin/lzgrep lzgrep /usr/bin/xzgrep --slave /usr/share/man/man1/lzgrep.1.gz lzgrep.1.gz /usr/share/man/man1/xzgrep.1.gz --slave /usr/bin/lzegrep lzegrep /usr/bin/xzegrep --slave /usr/share/man/man1/lzegrep.1.gz lzegrep.1.gz /usr/share/man/man1/xzegrep.1.gz --slave /usr/bin/lzfgrep lzfgrep /usr/bin/xzfgrep --slave /usr/share/man/man1/lzfgrep.1.gz lzfgrep.1.gz /usr/share/man/man1/xzfgrep.1.gz LOG-ALTERNATIVES: dpkg=xdg-utils: piuparts=r-bioc-rhdf5=2.56.0+dfsg-2: /usr/bin/update-alternatives --install /usr/bin/open open /usr/bin/xdg-open 50 --slave /usr/share/man/man1/open.1.gz open.1.gz /usr/share/man/man1/xdg-open.1.gz LOG-ALTERNATIVES: dpkg=liblapack3: piuparts=r-bioc-rhdf5=2.56.0+dfsg-2: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so.3 liblapack.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 10 LOG-ALTERNATIVES: dpkg=perl: piuparts=r-bioc-rhdf5=2.56.0+dfsg-2: /usr/bin/update-alternatives --remove rename /usr/bin/prename LOG-ALTERNATIVES: dpkg=cpp: piuparts=r-bioc-rhdf5=2.56.0+dfsg-2: /usr/bin/update-alternatives --quiet --install /lib/cpp cpp /usr/bin/cpp 10 LOG-ALTERNATIVES: dpkg=gcc: piuparts=r-bioc-rhdf5=2.56.0+dfsg-2: /usr/bin/update-alternatives --quiet --install /usr/bin/cc cc /usr/bin/gcc 20 LOG-ALTERNATIVES: dpkg=gcc: piuparts=r-bioc-rhdf5=2.56.0+dfsg-2: /usr/bin/update-alternatives --quiet --install /usr/bin/c89 c89 /usr/bin/c89-gcc 20 --slave /usr/share/man/man1/c89.1.gz c89.1.gz /usr/share/man/man1/c89-gcc.1.gz LOG-ALTERNATIVES: dpkg=gcc: piuparts=r-bioc-rhdf5=2.56.0+dfsg-2: /usr/bin/update-alternatives --quiet --install /usr/bin/c99 c99 /usr/bin/c99-gcc 20 --slave /usr/share/man/man1/c99.1.gz c99.1.gz /usr/share/man/man1/c99-gcc.1.gz LOG-ALTERNATIVES: dpkg=libhdf5-dev: piuparts=r-bioc-rhdf5=2.56.0+dfsg-2: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc hdf5.pc /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5_serial.pc 20 --slave /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5_hl.pc hdf5_hl.pc /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5_serial_hl.pc --slave /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5_hl_fortran.pc hdf5_hl_fortran.pc /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5_serial_hl_fortran.pc --slave /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5_fortran.pc hdf5_fortran.pc /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5_serial_fortran.pc --slave /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5_cpp.pc hdf5_cpp.pc /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5_serial_cpp.pc --slave /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5_hl_cpp.pc hdf5_hl_cpp.pc /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5_serial_hl_cpp.pc LOG-ALTERNATIVES: dpkg=libhdf5-dev: piuparts=r-bioc-rhdf5=2.56.0+dfsg-2: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/cmake/hdf5 hdf5.cmake /usr/lib/x86_64-linux-gnu/cmake/hdf5_serial 20 LOG-ALTERNATIVES: dpkg=libhdf5-dev: piuparts=r-bioc-rhdf5=2.56.0+dfsg-2: /usr/bin/update-alternatives --list hdf5.pc LOG-ALTERNATIVES: dpkg=g++: piuparts=r-bioc-rhdf5=2.56.0+dfsg-2: /usr/bin/update-alternatives --install /usr/bin/c++ c++ /usr/bin/g++ 20 1m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/post_install_log_alternatives'] 1m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'systemd-tmpfiles', '--cat-config'] 1m0.4s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 1m0.4s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'systemd-tmpfiles', '--cat-config'] 1m0.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp03bcnozj'] 1m1.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp03bcnozj'] 1m3.5s DEBUG: No broken symlinks as far as we can find. 1m4.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', '-ac', '--ignore-obsolete'] 1m10.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', '-ac', '--ignore-obsolete'] 1m10.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m10.3s DUMP: 0.15.9~deb12u1 1m10.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m10.3s INFO: Running adequate version 0.15.9~deb12u1 now. 1m10.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'r-bioc-rhdf5'] 1m10.4s DUMP: r-bioc-rhdf5: py-file-not-bytecompiled /usr/lib/R/site-library/rhdf5/scripts/create_nullable_arrays.py 1m10.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'r-bioc-rhdf5'] 1m10.4s ERROR: WARN: Inadequate results from running adequate! r-bioc-rhdf5: py-file-not-bytecompiled /usr/lib/R/site-library/rhdf5/scripts/create_nullable_arrays.py 1m10.4s ERROR: WARN: Running adequate resulted in inadequate tags found: py-file-not-bytecompiled 1m10.4s INFO: Running scripts pre_remove 1m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m16.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_remove_exceptions'] 1m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/pre_remove_exceptions'] 1m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m16.5s DUMP: install ok installed apt apt 3.3.2 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-3 install ok installed binutils binutils 2.47-2 install ok installed binutils-common:amd64 binutils-common 2.47-2 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.47-2 install ok installed bsdutils bsdutils 1:2.42.2-2 install ok installed build-essential build-essential 12.12 install ok installed bzip2 bzip2 1.0.8-6+b2 install ok installed ca-certificates ca-certificates 20260601 install ok installed cmake cmake 4.3.4-1 install ok installed comerr-dev:amd64 comerr-dev 2.1-1.47.4-1 install ok installed coreutils coreutils 9.10-1 install ok installed cpp cpp 4:16.1.0-3 install ok installed cpp-16 cpp-16 16.2.0-1 install ok installed cpp-16-x86-64-linux-gnu cpp-16-x86-64-linux-gnu 16.2.0-1 install ok installed cpp-x86-64-linux-gnu cpp-x86-64-linux-gnu 4:16.1.0-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.7 install ok installed dpkg-dev dpkg-dev 1.23.7 install ok installed findutils findutils 4.11.0-2 install ok installed fontconfig fontconfig 2.17.1-5 install ok installed fontconfig-config fontconfig-config 2.17.1-5 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-9 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-9 install ok installed g++ g++ 4:16.1.0-3 install ok installed g++-16 g++-16 16.2.0-1 install ok installed g++-16-x86-64-linux-gnu g++-16-x86-64-linux-gnu 16.2.0-1 install ok installed g++-x86-64-linux-gnu g++-x86-64-linux-gnu 4:16.1.0-3 install ok installed gcc gcc 4:16.1.0-3 install ok installed gcc-16 gcc-16 16.2.0-1 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-1 install ok installed gcc-16-x86-64-linux-gnu gcc-16-x86-64-linux-gnu 16.2.0-1 install ok installed gcc-x86-64-linux-gnu gcc-x86-64-linux-gnu 4:16.1.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hdf5-helpers hdf5-helpers 2.1.0+repack-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed krb5-multidev:amd64 krb5-multidev 1.22.1-3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libaec-dev:amd64 libaec-dev 1.1.7-1 install ok installed libaec0:amd64 libaec0 1.1.7-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.2 install ok installed libarchive13t64:amd64 libarchive13t64 3.8.9-1 install ok installed libasan8:amd64 libasan8 16.2.0-1 install ok installed libatomic1:amd64 libatomic1 16.2.0-1 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libbinutils:amd64 libbinutils 2.47-2 install ok installed libblas3:amd64 libblas3 3.12.1-8 install ok installed libblkid1:amd64 libblkid1 2.42.2-2 install ok installed libblosc1:amd64 libblosc1 1.21.5+ds-2+b2 install ok installed libbrotli-dev:amd64 libbrotli-dev 1.2.0-3 install ok installed libbrotli1:amd64 libbrotli1 1.2.0-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.42-17 install ok installed libc-dev-bin libc-dev-bin 2.42-17 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.42-17 install ok installed libc6:amd64 libc6 2.42-17 install ok installed libc6-dev:amd64 libc6-dev 2.42-17 install ok installed libcairo2:amd64 libcairo2 1.18.4-3+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.3-1+b1 install ok installed libcc1-0:amd64 libcc1-0 16.2.0-1 install ok installed libcom-err2:amd64 libcom-err2 1.47.4-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.47-2 install ok installed libctf0:amd64 libctf0 2.47-2 install ok installed libcurl4-openssl-dev:amd64 libcurl4-openssl-dev 8.21.0-2 install ok installed libcurl4t64:amd64 libcurl4t64 8.21.0-2 install ok installed libdatrie1:amd64 libdatrie1 0.2.14-2 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libdeflate0:amd64 libdeflate0 1.25-1 install ok installed libdpkg-perl libdpkg-perl 1.23.7 install ok installed libevent-2.1-7t64:amd64 libevent-2.1-7t64 2.1.13-stable-1 install ok installed libexpat1:amd64 libexpat1 2.8.2-1 install ok installed libffi8:amd64 libffi8 3.7.1-2 install ok installed libfontconfig1:amd64 libfontconfig1 2.17.1-5 install ok installed libfreetype6:amd64 libfreetype6 2.14.3+dfsg-2 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-5+b1 install ok installed libgcc-16-dev:amd64 libgcc-16-dev 16.2.0-1 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-1 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1+b2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1+b2 install ok installed libgfortran5:amd64 libgfortran5 16.2.0-1 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.88.3-2 install ok installed libgmp-dev:amd64 libgmp-dev 2:6.3.0+dfsg-5+b2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgmpxx4ldbl:amd64 libgmpxx4ldbl 2:6.3.0+dfsg-5+b2 install ok installed libgnutls-dane0t64:amd64 libgnutls-dane0t64 3.8.13-1 install ok installed libgnutls28-dev:amd64 libgnutls28-dev 3.8.13-1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.13-1 install ok installed libgomp1:amd64 libgomp1 16.2.0-1 install ok installed libgprofng0:amd64 libgprofng0 2.47-2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.15-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.22.1-3 install ok installed libgssrpc4t64:amd64 libgssrpc4t64 1.22.1-3 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 12.3.2-2+b2 install ok installed libhdf5-320:amd64 libhdf5-320 2.1.0+repack-1 install ok installed libhdf5-cpp-320:amd64 libhdf5-cpp-320 2.1.0+repack-1 install ok installed libhdf5-dev libhdf5-dev 2.1.0+repack-1 install ok installed libhdf5-fortran-320:amd64 libhdf5-fortran-320 2.1.0+repack-1 install ok installed libhdf5-hl-320:amd64 libhdf5-hl-320 2.1.0+repack-1 install ok installed libhdf5-hl-cpp-320:amd64 libhdf5-hl-cpp-320 2.1.0+repack-1 install ok installed libhdf5-hl-fortran-320:amd64 libhdf5-hl-fortran-320 2.1.0+repack-1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed libhwasan0:amd64 libhwasan0 16.2.0-1 install ok installed libice6:amd64 libice6 2:1.1.1-1+b2 install ok installed libicu78:amd64 libicu78 78.3-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-5 install ok installed libidn2-dev:amd64 libidn2-dev 2.3.8-5 install ok installed libisl23:amd64 libisl23 0.28-1 install ok installed libitm1:amd64 libitm1 16.2.0-1 install ok installed libjansson4:amd64 libjansson4 2.15.1-1 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b3 install ok installed libjpeg-dev:amd64 libjpeg-dev 1:3.1.3-4 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:3.1.3-4 install ok installed libjpeg62-turbo-dev:amd64 libjpeg62-turbo-dev 1:3.1.3-4 install ok installed libjsoncpp26:amd64 libjsoncpp26 1.9.8-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.22.1-3 install ok installed libkadm5clnt-mit12:amd64 libkadm5clnt-mit12 1.22.1-3 install ok installed libkadm5srv-mit12:amd64 libkadm5srv-mit12 1.22.1-3 install ok installed libkdb5-10t64:amd64 libkdb5-10t64 1.22.1-3 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6+b2 install ok installed libkrb5-3:amd64 libkrb5-3 1.22.1-3 install ok installed libkrb5-dev:amd64 libkrb5-dev 1.22.1-3 install ok installed libkrb5support0:amd64 libkrb5support0 1.22.1-3 install ok installed liblapack3:amd64 liblapack3 3.12.1-8 install ok installed libldap-dev:amd64 libldap-dev 2.6.13+dfsg-1+b1 install ok installed libldap2:amd64 libldap2 2.6.13+dfsg-1+b1 install ok installed liblerc4:amd64 liblerc4 4.2.0+ds-1 install ok installed liblsan0:amd64 liblsan0 16.2.0-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.3-1 install ok installed libmd0:amd64 libmd0 1.2.0-2 install ok installed libmount1:amd64 libmount1 2.42.2-2 install ok installed libmpc3:amd64 libmpc3 1.3.1-3 install ok installed libmpfr6:amd64 libmpfr6 4.2.2-3 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.70.0-1 install ok installed libnghttp2-dev:amd64 libnghttp2-dev 1.70.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.17.0-1 install ok installed libnghttp3-dev:amd64 libnghttp3-dev 1.17.0-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.24.0-1 install ok installed libngtcp2-crypto-ossl-dev:amd64 libngtcp2-crypto-ossl-dev 1.24.0-1 install ok installed libngtcp2-crypto-ossl0:amd64 libngtcp2-crypto-ossl0 1.24.0-1 install ok installed libngtcp2-dev:amd64 libngtcp2-dev 1.24.0-1 install ok installed libp11-kit-dev:amd64 libp11-kit-dev 0.26.4-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.26.4-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.58.0-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.58.0-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.58.0-1 install ok installed libpaper-utils libpaper-utils 2.2.5-0.4 install ok installed libpaper2:amd64 libpaper2 2.2.5-0.4 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1+b2 install ok installed libperl5.42:amd64 libperl5.42 5.42.2-3 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.46.4-1+b2 install ok installed libpkgconf7:amd64 libpkgconf7 2.5.1-4 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.58-1 install ok installed libproc2-1:amd64 libproc2-1 2:4.0.6-3 install ok installed libpsl-dev:amd64 libpsl-dev 0.23.1-1 install ok installed libpsl5t64:amd64 libpsl5t64 0.23.1-1 install ok installed libquadmath0:amd64 libquadmath0 16.2.0-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed librhash1:amd64 librhash1 1.4.6-1.1+b1 install ok installed librtmp-dev:amd64 librtmp-dev 2.6-1 install ok installed librtmp1:amd64 librtmp1 2.6-1 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-11 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-11 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1 install ok installed libselinux1:amd64 libselinux1 3.11-2 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsframe3:amd64 libsframe3 2.47-2 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1+b2 install ok installed libsm6:amd64 libsm6 2:1.2.6-1+b2 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.2-2 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.2.2-2+b2 install ok installed libssh2-1-dev:amd64 libssh2-1-dev 1.11.1-5 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-5 install ok installed libssl-dev:amd64 libssl-dev 3.6.3-1 install ok installed libssl3t64:amd64 libssl3t64 3.6.3-1 install ok installed libstdc++-16-dev:amd64 libstdc++-16-dev 16.2.0-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-1 install ok installed libsystemd0:amd64 libsystemd0 261.2-1 install ok installed libsz2:amd64 libsz2 1.1.7-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.21.0-2+b1 install ok installed libtasn1-6-dev:amd64 libtasn1-6-dev 4.21.0-2+b1 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.18+dfsg-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-12+b1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-11 install ok installed libthai-data libthai-data 0.1.30-3 install ok installed libthai0:amd64 libthai0 0.1.30-3 install ok installed libtiff6:amd64 libtiff6 4.7.2-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libtirpc-common libtirpc-common 1.3.7+ds-1 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.7+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.18-1 install ok installed libtsan2:amd64 libtsan2 16.2.0-1 install ok installed libubsan1:amd64 libubsan1 16.2.0-1 install ok installed libudev1:amd64 libudev1 261.2-1 install ok installed libunbound8:amd64 libunbound8 1.26.0-1 install ok installed libunistring-dev:amd64 libunistring-dev 1.4.2-1 install ok installed libunistring5:amd64 libunistring5 1.4.2-1 install ok installed libuuid1:amd64 libuuid1 2.42.2-2 install ok installed libuv1t64:amd64 libuv1t64 1.52.1-4 install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1+b2 install ok installed libx11-6:amd64 libx11-6 2:1.8.13-1 install ok installed libx11-data libx11-data 2:1.8.13-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1+b2 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b2 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-2+b1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b4 install ok installed libxft2:amd64 libxft2 2.3.6-1+b5 install ok installed libxml2-16:amd64 libxml2-16 2.15.3+dfsg-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1+b2 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b4 install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.3+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd-dev:amd64 libzstd-dev 1.5.7+dfsg-4 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed linux-libc-dev linux-libc-dev 7.1.7-1 install ok installed login login 1:4.16.0-2+really2.42.2-2 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed make make 4.4.1-3 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed mount mount 2.42.2-2 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed nettle-dev:amd64 nettle-dev 3.10.2-1+b1 install ok installed openssl openssl 3.6.3-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.3-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed patch patch 2.8-2 install ok installed perl perl 5.42.2-3 install ok installed perl-base perl-base 5.42.2-3 install ok installed perl-modules-5.42 perl-modules-5.42 5.42.2-3 install ok installed pkgconf:amd64 pkgconf 2.5.1-4 install ok installed pkgconf-bin pkgconf-bin 2.5.1-4 install ok installed procps procps 2:4.0.6-3 install ok installed r-base-core r-base-core 4.6.1-4 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.58.1-1 install ok installed r-bioc-biocmake r-bioc-biocmake 1.4.0+dfsg-1 install ok installed r-bioc-dir.expiry r-bioc-dir.expiry 1.20.0+dfsg-1 install ok installed r-bioc-rhdf5 r-bioc-rhdf5 2.56.0+dfsg-2 install ok installed r-bioc-rhdf5filters r-bioc-rhdf5filters 1.24.1+dfsg-1 install ok installed r-bioc-rhdf5lib r-bioc-rhdf5lib 2.0.0+dfsg-1 install ok installed r-cran-filelock r-cran-filelock 1.0.3-2 install ok installed r-cran-generics r-cran-generics 0.1.4-1 install ok installed r-pkg-team-core-architecture r-pkg-team-core-architecture 20260707 install ok installed readline-common readline-common 8.3-4 install ok installed rpcsvc-proto rpcsvc-proto 1.4.4-1 install ok installed sed sed 4.9-3 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.4.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-5 install ok installed tzdata tzdata 2026c-1 install ok installed ucf ucf 3.0056 install ok installed unzip unzip 6.0-30 install ok installed util-linux util-linux 2.42.2-2 install ok installed x11-common x11-common 1:7.7+26 install ok installed xdg-utils xdg-utils 1.2.1-2 install ok installed xz-utils xz-utils 5.8.3-1 install ok installed zip zip 3.0-16 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg+really1.3.2-3 1m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'apt-get', 'remove', '--allow-remove-essential', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'ca-certificates', 'cmake', 'comerr-dev:amd64', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dpkg-dev', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'g++-', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'hdf5-helpers', 'krb5-multidev:amd64', 'libaec-dev:amd64', 'libaec0:amd64', 'libarchive13t64:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libbrotli-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcom-err2:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4-openssl-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-16-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgssrpc4t64:amd64', 'libharfbuzz0b:amd64', 'libhdf5-320:amd64', 'libhdf5-cpp-320:amd64', 'libhdf5-dev', 'libhdf5-fortran-320:amd64', 'libhdf5-hl-320:amd64', 'libhdf5-hl-cpp-320:amd64', 'libhdf5-hl-fortran-320:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjsoncpp26:amd64', 'libk5crypto3:amd64', 'libkadm5clnt-mit12:amd64', 'libkadm5srv-mit12:amd64', 'libkdb5-10t64:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5-dev:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-dev:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp2-dev:amd64', 'libnghttp3-9:amd64', 'libnghttp3-dev:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl-dev:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libngtcp2-dev:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpkgconf7:amd64', 'libpng16-16t64:amd64', 'libproc2-1:amd64', 'libpsl-dev:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librhash1:amd64', 'librtmp-dev:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libssh2-1-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libstdc++-16-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunistring-dev:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'make', 'nettle-dev:amd64', 'openssl', 'patch', 'perl', 'perl-modules-5.42', 'pkgconf:amd64', 'pkgconf-bin', 'procps', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-biocmake', 'r-bioc-dir.expiry', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-cran-filelock', 'r-cran-generics', 'r-pkg-team-core-architecture', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'r-bioc-rhdf5'] 1m19.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: binutils binutils-common binutils-x86-64-linux-gnu build-essential bzip2 ca-certificates cmake comerr-dev cpp cpp-16 cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu dpkg-dev fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++ g++-16 g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-16 gcc-16-x86-64-linux-gnu gcc-x86-64-linux-gnu hdf5-helpers krb5-multidev libaec-dev libaec0 libarchive13t64 libasan8 libatomic1 libbinutils libblas3 libblosc1 libbrotli-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcom-err2 libctf-nobfd0 libctf0 libcurl4-openssl-dev libcurl4t64 libdatrie1 libdeflate0 libdpkg-perl libevent-2.1-7t64 libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgcc-16-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls28-dev libgnutls30t64 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libharfbuzz0b libhdf5-320 libhdf5-cpp-320 libhdf5-dev libhdf5-fortran-320 libhdf5-hl-320 libhdf5-hl-cpp-320 libhdf5-hl-fortran-320 libhwasan0 libice6 libicu78 libidn2-0 libidn2-dev libisl23 libitm1 libjansson4 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjsoncpp26 libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 liblapack3 libldap-dev libldap2 liblerc4 liblsan0 libmpc3 libmpfr6 libncursesw6 libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libngtcp2-16 libngtcp2-crypto-ossl-dev libngtcp2-crypto-ossl0 libngtcp2-dev libp11-kit-dev libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libperl5.42 libpixman-1-0 libpkgconf7 libpng16-16t64 libproc2-1 libpsl-dev libpsl5t64 libquadmath0 libreadline8t64 librhash1 librtmp-dev librtmp1 libsasl2-2 libsasl2-modules-db libsframe3 libsharpyuv0 libsm6 libsnappy1v5 libssh2-1-dev libssh2-1t64 libssl-dev libstdc++-16-dev libsz2 libtasn1-6 libtasn1-6-dev libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunbound8 libunistring-dev libunistring5 libuv1t64 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2-16 libxrender1 libxss1 libxt6t64 libzstd-dev linux-libc-dev make nettle-dev openssl patch perl perl-modules-5.42 pkgconf pkgconf-bin procps r-base-core r-bioc-biocgenerics r-bioc-biocmake r-bioc-dir.expiry r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-cran-filelock r-cran-generics r-pkg-team-core-architecture readline-common rpcsvc-proto sensible-utils ucf unzip x11-common xdg-utils xz-utils zip zlib1g-dev 0 upgraded, 0 newly installed, 207 to remove and 0 not upgraded. After this operation, 1319 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22998 files and directories currently installed.) Removing r-bioc-rhdf5 (2.56.0+dfsg-2) ... Removing r-bioc-rhdf5filters (1.24.1+dfsg-1) ... Removing build-essential (12.12) ... Removing g++ (4:16.1.0-3) ... Removing gcc (4:16.1.0-3) ... Removing dpkg-dev (1.23.7) ... Removing g++-x86-64-linux-gnu (4:16.1.0-3) ... Removing gcc-x86-64-linux-gnu (4:16.1.0-3) ... Removing bzip2 (1.0.8-6+b2) ... Removing r-bioc-rhdf5lib (2.0.0+dfsg-1) ... Removing r-bioc-biocmake (1.4.0+dfsg-1) ... Removing r-bioc-dir.expiry (1.20.0+dfsg-1) ... Removing r-bioc-biocgenerics (0.58.1-1) ... Removing r-cran-generics (0.1.4-1) ... Removing r-cran-filelock (1.0.3-2) ... Removing r-base-core (4.6.1-4) ... Removing ca-certificates (20260601) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing cmake (4.3.4-1) ... Removing libhdf5-dev (2.1.0+repack-1) ... Removing libcurl4-openssl-dev:amd64 (8.21.0-2) ... Removing libkrb5-dev:amd64 (1.22.1-3) ... Removing krb5-multidev:amd64 (1.22.1-3) ... Removing comerr-dev:amd64 (2.1-1.47.4-1) ... Removing cpp (4:16.1.0-3) ... Removing cpp-x86-64-linux-gnu (4:16.1.0-3) ... Removing libpangocairo-1.0-0:amd64 (1.58.0-1) ... Removing libpangoft2-1.0-0:amd64 (1.58.0-1) ... Removing libpango-1.0-0:amd64 (1.58.0-1) ... Removing fontconfig (2.17.1-5) ... Removing libtk8.6:amd64 (8.6.18-1) ... Removing libxft2:amd64 (2.3.6-1+b5) ... Removing libcairo2:amd64 (1.18.4-3+b1) ... Removing libfontconfig1:amd64 (2.17.1-5) ... Removing fontconfig-config (2.17.1-5) ... Removing fonts-dejavu-core (2.37-9) ... Removing fonts-dejavu-mono (2.37-9) ... Removing g++-16 (16.2.0-1) ... Removing g++-16-x86-64-linux-gnu (16.2.0-1) ... Removing hdf5-helpers (2.1.0+repack-1) ... Removing libaec-dev:amd64 (1.1.7-1) ... Removing libaec0:amd64 (1.1.7-1) ... Removing libarchive13t64:amd64 (3.8.9-1) ... Removing libstdc++-16-dev:amd64 (16.2.0-1) ... Removing libharfbuzz0b:amd64 (12.3.2-2+b2) ... Removing libglib2.0-0t64:amd64 (2.88.3-2) ... Removing liblapack3:amd64 (3.12.1-8) ... Removing libblas3:amd64 (3.12.1-8) ... Removing libblosc1:amd64 (1.21.5+ds-2+b2) ... Removing libbrotli-dev:amd64 (1.2.0-3) ... Removing libfreetype6:amd64 (2.14.3+dfsg-2) ... Removing libcurl4t64:amd64 (8.21.0-2) ... Removing libbrotli1:amd64 (1.2.0-3) ... Removing librtmp-dev:amd64 (2.6-1) ... Removing libssh2-1-dev:amd64 (1.11.1-5) ... Removing zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.2-3) ... Removing libjpeg-dev:amd64 (1:3.1.3-4) ... Removing libjpeg62-turbo-dev:amd64 (1:3.1.3-4) ... Removing libgnutls28-dev:amd64 (3.8.13-1) ... Removing libc6-dev:amd64 (2.42-17) ... Removing libc-dev-bin (2.42-17) ... Removing libkadm5srv-mit12:amd64 (1.22.1-3) ... Removing libkdb5-10t64:amd64 (1.22.1-3) ... Removing libkadm5clnt-mit12:amd64 (1.22.1-3) ... Removing libtirpc3t64:amd64 (1.3.7+ds-1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libthai0:amd64 (0.1.30-3) ... Removing libdatrie1:amd64 (0.2.14-2) ... Removing libtiff6:amd64 (4.7.2-1) ... Removing libdeflate0:amd64 (1.25-1) ... Removing libdpkg-perl (1.23.7) ... Removing libgnutls-dane0t64:amd64 (3.8.13-1) ... Removing libunbound8:amd64 (1.26.0-1) ... Removing libevent-2.1-7t64:amd64 (2.1.13-stable-1) ... Removing libexpat1:amd64 (2.8.2-1) ... Removing libp11-kit-dev:amd64 (0.26.4-1) ... Removing librtmp1:amd64 (2.6-1) ... Removing libgnutls30t64:amd64 (3.8.13-1) ... Removing libp11-kit0:amd64 (0.26.4-1) ... Removing libffi8:amd64 (3.7.1-2) ... Removing libfribidi0:amd64 (1.0.16-5+b1) ... Removing perl (5.42.2-3) ... Removing libperl5.42:amd64 (5.42.2-3) ... Removing libgdbm-compat4t64:amd64 (1.26-1+b2) ... Removing libgdbm6t64:amd64 (1.26-1+b2) ... Removing libhdf5-hl-fortran-320:amd64 (2.1.0+repack-1) ... Removing libhdf5-fortran-320:amd64 (2.1.0+repack-1) ... Removing libgfortran5:amd64 (16.2.0-1) ... Removing nettle-dev:amd64 (3.10.2-1+b1) ... Removing libgmp-dev:amd64 (2:6.3.0+dfsg-5+b2) ... Removing libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-5+b2) ... Removing libgraphite2-3:amd64 (1.3.15-2) ... Removing libgssrpc4t64:amd64 (1.22.1-3) ... Removing libhdf5-hl-cpp-320:amd64 (2.1.0+repack-1) ... Removing libhdf5-hl-320:amd64 (2.1.0+repack-1) ... Removing libhdf5-cpp-320:amd64 (2.1.0+repack-1) ... Removing libhdf5-320:amd64 (2.1.0+repack-1) ... Removing libxt6t64:amd64 (1:1.2.1-1.3+b2) ... Removing libsm6:amd64 (2:1.2.6-1+b2) ... Removing libice6:amd64 (2:1.1.1-1+b2) ... Removing libicu78:amd64 (78.3-2) ... Removing libpsl-dev:amd64 (0.23.1-1) ... Removing libidn2-dev:amd64 (2.3.8-5) ... Removing libpsl5t64:amd64 (0.23.1-1) ... Removing libidn2-0:amd64 (2.3.8-5) ... Removing libjbig0:amd64 (2.1-6.1+b3) ... Removing libjpeg62-turbo:amd64 (1:3.1.3-4) ... Removing libjsoncpp26:amd64 (1.9.8-2) ... Removing libldap-dev:amd64 (2.6.13+dfsg-1+b1) ... Removing libldap2:amd64 (2.6.13+dfsg-1+b1) ... Removing liblerc4:amd64 (4.2.0+ds-1) ... Removing ucf (3.0056) ... Removing procps (2:4.0.6-3) ... Removing libncursesw6:amd64 (6.6+20260608-2) ... Removing libnghttp2-dev:amd64 (1.70.0-1) ... Removing libnghttp2-14:amd64 (1.70.0-1) ... Removing libnghttp3-dev:amd64 (1.17.0-1) ... Removing libnghttp3-9:amd64 (1.17.0-1) ... Removing libngtcp2-dev:amd64 (1.24.0-1) ... Removing libngtcp2-crypto-ossl-dev:amd64 (1.24.0-1) ... Removing libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Removing libngtcp2-16:amd64 (1.24.0-1) ... Removing libpaper-utils (2.2.5-0.4) ... Removing libpaper2:amd64 (2.2.5-0.4) ... Removing libpixman-1-0:amd64 (0.46.4-1+b2) ... Removing pkgconf:amd64 (2.5.1-4) ... Removing pkgconf-bin (2.5.1-4) ... Removing libpkgconf7:amd64 (2.5.1-4) ... Removing libpng16-16t64:amd64 (1.6.58-1) ... Removing libproc2-1:amd64 (2:4.0.6-3) ... Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing librhash1:amd64 (1.4.6-1.1+b1) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-11) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-11) ... Removing libwebp7:amd64 (1.5.0-0.1+b2) ... Removing libsharpyuv0:amd64 (1.5.0-0.1+b2) ... Removing libsnappy1v5:amd64 (1.2.2-2+b2) ... Removing libssh2-1t64:amd64 (1.11.1-5) ... Removing libssl-dev:amd64 (3.6.3-1) ... Removing libsz2:amd64 (1.1.7-1) ... Removing libtasn1-6-dev:amd64 (4.21.0-2+b1) ... Removing libtasn1-6:amd64 (4.21.0-2+b1) ... Removing libtcl8.6:amd64 (8.6.18+dfsg-1) ... Removing libtext-wrapi18n-perl (0.06-11) ... Removing libtext-charwidth-perl:amd64 (0.04-12+b1) ... Removing libthai-data (0.1.30-3) ... Removing libtirpc-common (1.3.7+ds-1) ... Removing libunistring-dev:amd64 (1.4.2-1) ... Removing libunistring5:amd64 (1.4.2-1) ... Removing libuv1t64:amd64 (1.52.1-4) ... Removing libxss1:amd64 (1:1.2.3-1+b4) ... Removing libxrender1:amd64 (1:0.9.12-1+b2) ... Removing libxcb-shm0:amd64 (1.17.0-2+b2) ... Removing libxcb-render0:amd64 (1.17.0-2+b2) ... Removing libxext6:amd64 (2:1.3.4-1+b4) ... Removing libxml2-16:amd64 (2.15.3+dfsg-1) ... Removing libzstd-dev:amd64 (1.5.7+dfsg-4) ... Removing linux-libc-dev (7.1.7-1) ... Removing make (4.4.1-3) ... Removing openssl (3.6.3-1) ... Removing patch (2.8-2) ... Removing perl-modules-5.42 (5.42.2-3) ... Removing r-pkg-team-core-architecture (20260707) ... Removing readline-common (8.3-4) ... Removing rpcsvc-proto (1.4.4-1) ... Removing sensible-utils (0.0.26) ... Removing unzip (6.0-30) ... Removing x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.2.1-2) ... Removing xz-utils (5.8.3-1) ... Removing zip (3.0-16) ... Removing gcc-16 (16.2.0-1) ... Removing binutils (2.47-2) ... Removing libgprofng0:amd64 (2.47-2) ... Removing gcc-16-x86-64-linux-gnu (16.2.0-1) ... Removing binutils-x86-64-linux-gnu (2.47-2) ... Removing libctf0:amd64 (2.47-2) ... Removing libbinutils:amd64 (2.47-2) ... Removing binutils-common:amd64 (2.47-2) ... Removing cpp-16 (16.2.0-1) ... Removing cpp-16-x86-64-linux-gnu (16.2.0-1) ... Removing libgcc-16-dev:amd64 (16.2.0-1) ... Removing libasan8:amd64 (16.2.0-1) ... Removing libatomic1:amd64 (16.2.0-1) ... Removing libcc1-0:amd64 (16.2.0-1) ... Removing libgssapi-krb5-2:amd64 (1.22.1-3) ... Removing libctf-nobfd0:amd64 (2.47-2) ... Removing libgomp1:amd64 (16.2.0-1) ... Removing libhwasan0:amd64 (16.2.0-1) ... Removing libisl23:amd64 (0.28-1) ... Removing libitm1:amd64 (16.2.0-1) ... Removing libjansson4:amd64 (2.15.1-1) ... Removing liblsan0:amd64 (16.2.0-1) ... Removing libmpc3:amd64 (1.3.1-3) ... Removing libmpfr6:amd64 (4.2.2-3) ... Removing libquadmath0:amd64 (16.2.0-1) ... Removing libsframe3:amd64 (2.47-2) ... Removing libtsan2:amd64 (16.2.0-1) ... Removing libubsan1:amd64 (16.2.0-1) ... Removing libx11-6:amd64 (2:1.8.13-1) ... Removing libx11-data (2:1.8.13-1) ... Removing libxcb1:amd64 (1.17.0-2+b2) ... Removing libxau6:amd64 (1:1.0.11-1+b2) ... Removing libxdmcp6:amd64 (1:1.1.5-2+b1) ... Removing libkrb5-3:amd64 (1.22.1-3) ... Removing libcom-err2:amd64 (1.47.4-1) ... Removing libk5crypto3:amd64 (1.22.1-3) ... Removing libkeyutils1:amd64 (1.6.3-6+b2) ... Removing libkrb5support0:amd64 (1.22.1-3) ... Processing triggers for libc-bin (2.42-17) ... 1m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'apt-get', 'remove', '--allow-remove-essential', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'ca-certificates', 'cmake', 'comerr-dev:amd64', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dpkg-dev', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'g++-', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'hdf5-helpers', 'krb5-multidev:amd64', 'libaec-dev:amd64', 'libaec0:amd64', 'libarchive13t64:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libbrotli-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcom-err2:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4-openssl-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-16-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgssrpc4t64:amd64', 'libharfbuzz0b:amd64', 'libhdf5-320:amd64', 'libhdf5-cpp-320:amd64', 'libhdf5-dev', 'libhdf5-fortran-320:amd64', 'libhdf5-hl-320:amd64', 'libhdf5-hl-cpp-320:amd64', 'libhdf5-hl-fortran-320:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjsoncpp26:amd64', 'libk5crypto3:amd64', 'libkadm5clnt-mit12:amd64', 'libkadm5srv-mit12:amd64', 'libkdb5-10t64:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5-dev:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-dev:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp2-dev:amd64', 'libnghttp3-9:amd64', 'libnghttp3-dev:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl-dev:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libngtcp2-dev:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpkgconf7:amd64', 'libpng16-16t64:amd64', 'libproc2-1:amd64', 'libpsl-dev:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librhash1:amd64', 'librtmp-dev:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libssh2-1-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libstdc++-16-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunistring-dev:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'make', 'nettle-dev:amd64', 'openssl', 'patch', 'perl', 'perl-modules-5.42', 'pkgconf:amd64', 'pkgconf-bin', 'procps', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-biocmake', 'r-bioc-dir.expiry', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-cran-filelock', 'r-cran-generics', 'r-pkg-team-core-architecture', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'r-bioc-rhdf5'] 1m19.4s INFO: Running scripts post_remove 1m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/post_remove_exceptions'] 1m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/post_remove_exceptions'] 1m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'ca-certificates', 'cmake', 'comerr-dev:amd64', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dpkg-dev', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'g++', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'hdf5-helpers', 'krb5-multidev:amd64', 'libaec-dev:amd64', 'libaec0:amd64', 'libarchive13t64:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libbrotli-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcom-err2:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4-openssl-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-16-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgssrpc4t64:amd64', 'libharfbuzz0b:amd64', 'libhdf5-320:amd64', 'libhdf5-cpp-320:amd64', 'libhdf5-dev', 'libhdf5-fortran-320:amd64', 'libhdf5-hl-320:amd64', 'libhdf5-hl-cpp-320:amd64', 'libhdf5-hl-fortran-320:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjsoncpp26:amd64', 'libk5crypto3:amd64', 'libkadm5clnt-mit12:amd64', 'libkadm5srv-mit12:amd64', 'libkdb5-10t64:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5-dev:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-dev:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp2-dev:amd64', 'libnghttp3-9:amd64', 'libnghttp3-dev:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl-dev:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libngtcp2-dev:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpkgconf7:amd64', 'libpng16-16t64:amd64', 'libproc2-1:amd64', 'libpsl-dev:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librhash1:amd64', 'librtmp-dev:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libssh2-1-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libstdc++-16-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunistring-dev:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'make', 'nettle-dev:amd64', 'openssl', 'patch', 'perl', 'perl-modules-5.42', 'pkgconf:amd64', 'pkgconf-bin', 'procps', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-biocmake', 'r-bioc-dir.expiry', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-cran-filelock', 'r-cran-generics', 'r-pkg-team-core-architecture', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xz-utils', 'zip', 'zlib1g-dev:amd64'] 1m20.0s DUMP: (Reading database ... 5037 files and directories currently installed.) Purging configuration files for binutils (2.47-2) ... Purging configuration files for binutils-common:amd64 (2.47-2) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove build-essential which is not installed dpkg: warning: ignoring request to remove bzip2 which is not installed Purging configuration files for ca-certificates (20260601) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove cmake which is not installed Purging configuration files for comerr-dev:amd64 (2.1-1.47.4-1) ... Purging configuration files for cpp (4:16.1.0-3) ... dpkg: warning: ignoring request to remove cpp-16 which is not installed dpkg: warning: ignoring request to remove cpp-16-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove cpp-x86-64-linux-gnu which is not installed Purging configuration files for dpkg-dev (1.23.7) ... Purging configuration files for fontconfig (2.17.1-5) ... Purging configuration files for fontconfig-config (2.17.1-5) ... Purging configuration files for fonts-dejavu-core (2.37-9) ... Purging configuration files for fonts-dejavu-mono (2.37-9) ... dpkg: warning: ignoring request to remove g++ which is not installed dpkg: warning: ignoring request to remove g++-16 which is not installed dpkg: warning: ignoring request to remove g++-16-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove g++-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove gcc which is not installed dpkg: warning: ignoring request to remove gcc-16 which is not installed dpkg: warning: ignoring request to remove gcc-16-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove gcc-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove hdf5-helpers which is not installed dpkg: warning: ignoring request to remove krb5-multidev which is not installed dpkg: warning: ignoring request to remove libaec-dev which is not installed dpkg: warning: ignoring request to remove libaec0 which is not installed dpkg: warning: ignoring request to remove libarchive13t64 which is not installed dpkg: warning: ignoring request to remove libasan8 which is not installed dpkg: warning: ignoring request to remove libatomic1 which is not installed dpkg: warning: ignoring request to remove libbinutils which is not installed dpkg: warning: ignoring request to remove libblas3 which is not installed dpkg: warning: ignoring request to remove libblosc1 which is not installed dpkg: warning: ignoring request to remove libbrotli-dev which is not installed dpkg: warning: ignoring request to remove libbrotli1 which is not installed dpkg: warning: ignoring request to remove libc-dev-bin which is not installed dpkg: warning: ignoring request to remove libc6-dev which is not installed dpkg: warning: ignoring request to remove libcairo2 which is not installed dpkg: warning: ignoring request to remove libcc1-0 which is not installed dpkg: warning: ignoring request to remove libcom-err2 which is not installed dpkg: warning: ignoring request to remove libctf-nobfd0 which is not installed dpkg: warning: ignoring request to remove libctf0 which is not installed dpkg: warning: ignoring request to remove libcurl4-openssl-dev which is not installed dpkg: warning: ignoring request to remove libcurl4t64 which is not installed dpkg: warning: ignoring request to remove libdatrie1 which is not installed dpkg: warning: ignoring request to remove libdeflate0 which is not installed dpkg: warning: ignoring request to remove libdpkg-perl which is not installed dpkg: warning: ignoring request to remove libevent-2.1-7t64 which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libfontconfig1 which is not installed dpkg: warning: ignoring request to remove libfreetype6 which is not installed dpkg: warning: ignoring request to remove libfribidi0 which is not installed dpkg: warning: ignoring request to remove libgcc-16-dev which is not installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which is not installed dpkg: warning: ignoring request to remove libgdbm6t64 which is not installed dpkg: warning: ignoring request to remove libgfortran5 which is not installed Purging configuration files for libglib2.0-0t64:amd64 (2.88.3-2) ... dpkg: warning: ignoring request to remove libgmp-dev which is not installed dpkg: warning: ignoring request to remove libgmpxx4ldbl which is not installed dpkg: warning: ignoring request to remove libgnutls-dane0t64 which is not installed dpkg: warning: ignoring request to remove libgnutls28-dev which is not installed dpkg: warning: ignoring request to remove libgnutls30t64 which is not installed dpkg: warning: ignoring request to remove libgomp1 which is not installed dpkg: warning: ignoring request to remove libgprofng0 which is not installed dpkg: warning: ignoring request to remove libgraphite2-3 which is not installed Purging configuration files for libgssapi-krb5-2:amd64 (1.22.1-3) ... dpkg: warning: ignoring request to remove libgssrpc4t64 which is not installed dpkg: warning: ignoring request to remove libharfbuzz0b which is not installed dpkg: warning: ignoring request to remove libhdf5-320 which is not installed dpkg: warning: ignoring request to remove libhdf5-cpp-320 which is not installed dpkg: warning: ignoring request to remove libhdf5-dev which is not installed dpkg: warning: ignoring request to remove libhdf5-fortran-320 which is not installed dpkg: warning: ignoring request to remove libhdf5-hl-320 which is not installed dpkg: warning: ignoring request to remove libhdf5-hl-cpp-320 which is not installed dpkg: warning: ignoring request to remove libhdf5-hl-fortran-320 which is not installed dpkg: warning: ignoring request to remove libhwasan0 which is not installed dpkg: warning: ignoring request to remove libice6 which is not installed dpkg: warning: ignoring request to remove libicu78 which is not installed dpkg: warning: ignoring request to remove libidn2-0 which is not installed dpkg: warning: ignoring request to remove libidn2-dev which is not installed dpkg: warning: ignoring request to remove libisl23 which is not installed dpkg: warning: ignoring request to remove libitm1 which is not installed dpkg: warning: ignoring request to remove libjansson4 which is not installed dpkg: warning: ignoring request to remove libjbig0 which is not installed dpkg: warning: ignoring request to remove libjpeg-dev which is not installed dpkg: warning: ignoring request to remove libjpeg62-turbo which is not installed dpkg: warning: ignoring request to remove libjpeg62-turbo-dev which is not installed dpkg: warning: ignoring request to remove libjsoncpp26 which is not installed dpkg: warning: ignoring request to remove libk5crypto3 which is not installed dpkg: warning: ignoring request to remove libkadm5clnt-mit12 which is not installed dpkg: warning: ignoring request to remove libkadm5srv-mit12 which is not installed dpkg: warning: ignoring request to remove libkdb5-10t64 which is not installed dpkg: warning: ignoring request to remove libkeyutils1 which is not installed dpkg: warning: ignoring request to remove libkrb5-3 which is not installed dpkg: warning: ignoring request to remove libkrb5-dev which is not installed dpkg: warning: ignoring request to remove libkrb5support0 which is not installed dpkg: warning: ignoring request to remove liblapack3 which is not installed dpkg: warning: ignoring request to remove libldap-dev which is not installed dpkg: warning: ignoring request to remove libldap2 which is not installed dpkg: warning: ignoring request to remove liblerc4 which is not installed dpkg: warning: ignoring request to remove liblsan0 which is not installed dpkg: warning: ignoring request to remove libmpc3 which is not installed dpkg: warning: ignoring request to remove libmpfr6 which is not installed dpkg: warning: ignoring request to remove libncursesw6 which is not installed dpkg: warning: ignoring request to remove libnghttp2-14 which is not installed dpkg: warning: ignoring request to remove libnghttp2-dev which is not installed dpkg: warning: ignoring request to remove libnghttp3-9 which is not installed dpkg: warning: ignoring request to remove libnghttp3-dev which is not installed dpkg: warning: ignoring request to remove libngtcp2-16 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-ossl-dev which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-ossl0 which is not installed dpkg: warning: ignoring request to remove libngtcp2-dev which is not installed dpkg: warning: ignoring request to remove libp11-kit-dev which is not installed dpkg: warning: ignoring request to remove libp11-kit0 which is not installed dpkg: warning: ignoring request to remove libpango-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpaper-utils which is not installed Purging configuration files for libpaper2:amd64 (2.2.5-0.4) ... dpkg: warning: ignoring request to remove libperl5.42 which is not installed dpkg: warning: ignoring request to remove libpixman-1-0 which is not installed dpkg: warning: ignoring request to remove libpkgconf7 which is not installed dpkg: warning: ignoring request to remove libpng16-16t64 which is not installed dpkg: warning: ignoring request to remove libproc2-1 which is not installed dpkg: warning: ignoring request to remove libpsl-dev which is not installed dpkg: warning: ignoring request to remove libpsl5t64 which is not installed dpkg: warning: ignoring request to remove libquadmath0 which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove librhash1 which is not installed dpkg: warning: ignoring request to remove librtmp-dev which is not installed dpkg: warning: ignoring request to remove librtmp1 which is not installed dpkg: warning: ignoring request to remove libsasl2-2 which is not installed dpkg: warning: ignoring request to remove libsasl2-modules-db which is not installed dpkg: warning: ignoring request to remove libsframe3 which is not installed dpkg: warning: ignoring request to remove libsharpyuv0 which is not installed dpkg: warning: ignoring request to remove libsm6 which is not installed dpkg: warning: ignoring request to remove libsnappy1v5 which is not installed dpkg: warning: ignoring request to remove libssh2-1-dev which is not installed dpkg: warning: ignoring request to remove libssh2-1t64 which is not installed dpkg: warning: ignoring request to remove libssl-dev which is not installed dpkg: warning: ignoring request to remove libstdc++-16-dev which is not installed dpkg: warning: ignoring request to remove libsz2 which is not installed dpkg: warning: ignoring request to remove libtasn1-6 which is not installed dpkg: warning: ignoring request to remove libtasn1-6-dev which is not installed dpkg: warning: ignoring request to remove libtcl8.6 which is not installed dpkg: warning: ignoring request to remove libtext-charwidth-perl which is not installed dpkg: warning: ignoring request to remove libtext-wrapi18n-perl which is not installed dpkg: warning: ignoring request to remove libthai-data which is not installed dpkg: warning: ignoring request to remove libthai0 which is not installed dpkg: warning: ignoring request to remove libtiff6 which is not installed Purging configuration files for libtirpc-common (1.3.7+ds-1) ... Purging configuration files for libtirpc3t64:amd64 (1.3.7+ds-1) ... dpkg: warning: ignoring request to remove libtk8.6 which is not installed dpkg: warning: ignoring request to remove libtsan2 which is not installed dpkg: warning: ignoring request to remove libubsan1 which is not installed dpkg: warning: ignoring request to remove libunbound8 which is not installed dpkg: warning: ignoring request to remove libunistring-dev which is not installed dpkg: warning: ignoring request to remove libunistring5 which is not installed dpkg: warning: ignoring request to remove libuv1t64 which is not installed dpkg: warning: ignoring request to remove libwebp7 which is not installed dpkg: warning: ignoring request to remove libx11-6 which is not installed dpkg: warning: ignoring request to remove libx11-data which is not installed dpkg: warning: ignoring request to remove libxau6 which is not installed dpkg: warning: ignoring request to remove libxcb-render0 which is not installed dpkg: warning: ignoring request to remove libxcb-shm0 which is not installed dpkg: warning: ignoring request to remove libxcb1 which is not installed dpkg: warning: ignoring request to remove libxdmcp6 which is not installed dpkg: warning: ignoring request to remove libxext6 which is not installed dpkg: warning: ignoring request to remove libxft2 which is not installed dpkg: warning: ignoring request to remove libxml2-16 which is not installed dpkg: warning: ignoring request to remove libxrender1 which is not installed dpkg: warning: ignoring request to remove libxss1 which is not installed dpkg: warning: ignoring request to remove libxt6t64 which is not installed dpkg: warning: ignoring request to remove libzstd-dev which is not installed dpkg: warning: ignoring request to remove linux-libc-dev which is not installed dpkg: warning: ignoring request to remove make which is not installed dpkg: warning: ignoring request to remove nettle-dev which is not installed Purging configuration files for openssl (3.6.3-1) ... dpkg: warning: ignoring request to remove patch which is not installed Purging configuration files for perl (5.42.2-3) ... dpkg: warning: ignoring request to remove perl-modules-5.42 which is not installed Purging configuration files for pkgconf:amd64 (2.5.1-4) ... dpkg: warning: ignoring request to remove pkgconf-bin which is not installed Purging configuration files for procps (2:4.0.6-3) ... Purging configuration files for r-base-core (4.6.1-4) ... dpkg: warning: ignoring request to remove r-bioc-biocgenerics which is not installed dpkg: warning: ignoring request to remove r-bioc-biocmake which is not installed dpkg: warning: ignoring request to remove r-bioc-dir.expiry which is not installed dpkg: warning: ignoring request to remove r-bioc-rhdf5filters which is not installed dpkg: warning: ignoring request to remove r-bioc-rhdf5lib which is not installed dpkg: warning: ignoring request to remove r-cran-filelock which is not installed dpkg: warning: ignoring request to remove r-cran-generics which is not installed dpkg: warning: ignoring request to remove r-pkg-team-core-architecture which is not installed Purging configuration files for readline-common (8.3-4) ... dpkg: warning: ignoring request to remove rpcsvc-proto which is not installed dpkg: warning: ignoring request to remove sensible-utils which is not installed Purging configuration files for ucf (3.0056) ... dpkg: warning: ignoring request to remove unzip which is not installed Purging configuration files for x11-common (1:7.7+26) ... dpkg: warning: ignoring request to remove xdg-utils which is not installed dpkg: warning: ignoring request to remove xz-utils which is not installed dpkg: warning: ignoring request to remove zip which is not installed dpkg: warning: ignoring request to remove zlib1g-dev which is not installed 1m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'ca-certificates', 'cmake', 'comerr-dev:amd64', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dpkg-dev', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'g++', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'hdf5-helpers', 'krb5-multidev:amd64', 'libaec-dev:amd64', 'libaec0:amd64', 'libarchive13t64:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libbrotli-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcom-err2:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4-openssl-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-16-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgssrpc4t64:amd64', 'libharfbuzz0b:amd64', 'libhdf5-320:amd64', 'libhdf5-cpp-320:amd64', 'libhdf5-dev', 'libhdf5-fortran-320:amd64', 'libhdf5-hl-320:amd64', 'libhdf5-hl-cpp-320:amd64', 'libhdf5-hl-fortran-320:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjsoncpp26:amd64', 'libk5crypto3:amd64', 'libkadm5clnt-mit12:amd64', 'libkadm5srv-mit12:amd64', 'libkdb5-10t64:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5-dev:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap-dev:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp2-dev:amd64', 'libnghttp3-9:amd64', 'libnghttp3-dev:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl-dev:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libngtcp2-dev:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpkgconf7:amd64', 'libpng16-16t64:amd64', 'libproc2-1:amd64', 'libpsl-dev:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librhash1:amd64', 'librtmp-dev:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libssh2-1-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libstdc++-16-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunistring-dev:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'make', 'nettle-dev:amd64', 'openssl', 'patch', 'perl', 'perl-modules-5.42', 'pkgconf:amd64', 'pkgconf-bin', 'procps', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-biocmake', 'r-bioc-dir.expiry', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-cran-filelock', 'r-cran-generics', 'r-pkg-team-core-architecture', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xz-utils', 'zip', 'zlib1g-dev:amd64'] 1m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'dpkg', '--purge', 'r-bioc-rhdf5'] 1m20.0s DUMP: dpkg: warning: ignoring request to remove r-bioc-rhdf5 which is not installed 1m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'dpkg', '--purge', 'r-bioc-rhdf5'] 1m20.0s INFO: Running scripts post_purge 1m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/post_purge_exceptions'] 1m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/post_purge_exceptions'] 1m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'dpkg', '--purge', '--pending'] 1m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'dpkg', '--purge', '--pending'] 1m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'dpkg', '--remove', '--pending'] 1m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'dpkg', '--remove', '--pending'] 1m20.0s INFO: Running scripts post_test 1m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/post_test_exceptions'] 1m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'tmp/scripts/post_test_exceptions'] 1m20.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp03bcnozj'] 1m20.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp03bcnozj'] 1m20.8s DEBUG: No broken symlinks as far as we can find. 1m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'dpkg-divert', '--list'] 1m20.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 1m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'dpkg-divert', '--list'] 1m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'apt-get', 'clean'] 1m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp03bcnozj', 'apt-get', 'clean'] 1m20.9s DEBUG: Recording chroot state 1m21.6s INFO: PASS: Installation and purging test. 1m22.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp03bcnozj/dev/shm'] 1m22.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp03bcnozj/dev/shm'] 1m22.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp03bcnozj/dev/console'] 1m22.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp03bcnozj/dev/console'] 1m22.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp03bcnozj/dev/ptmx'] 1m22.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp03bcnozj/dev/ptmx'] 1m22.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp03bcnozj/dev/pts'] 1m22.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp03bcnozj/dev/pts'] 1m22.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp03bcnozj/proc'] 1m22.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp03bcnozj/proc'] 1m22.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp03bcnozj'] 1m22.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp03bcnozj'] 1m22.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp03bcnozj 1m22.3s INFO: PASS: All tests. 1m22.3s INFO: piuparts run ends. ret=0 End: 2026-08-10 11:41:34 GMT