Start: 2026-09-24 15:11:00 GMT Package: relion Version: 5.1.0+dfsg-1 Installed-Size: 161633 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: ctffind (<< 5), mpi-default-bin, libc6 (>= 2.43), libfftw3-double3 (>= 3.3.11), libfftw3-single3 (>= 3.3.11), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libopenmpi40 (>= 5.0.11), libpng16-16t64 (>= 1.6.46), libstdc++6 (>= 14), libtiff6 (>= 4.0.3), python3:any Recommends: ghostscript, pbzip2, xz-utils, zstd Conflicts: relion-cuda Description: toolkit for 3D reconstructions in cryo-electron microscopy Homepage: https://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page Commands: relion_align_symmetry, relion_align_tiltseries, relion_align_tiltseries_mpi, relion_autopick, relion_autopick_mpi, relion_backproject_2d, relion_batchrun, relion_batchrun_mpi, relion_class_ranker, relion_convert_star, relion_convert_to_tiff, relion_convert_to_tiff_mpi, relion_ctf_mask_test, relion_ctf_refine, relion_ctf_refine_mpi, relion_ctf_toolbox, relion_delete_blobs_2d, relion_demodulate, relion_estimate_gain, relion_external_reconstruct, relion_find_amyloid, relion_find_amyloid_mpi, relion_find_tiltpairs, relion_flex_analyse, relion_flex_analyse_mpi, relion_helix_inimodel2d, relion_helix_toolbox, relion_helix_vote_classes, relion_image_handler, relion_import, relion_localsym, relion_localsym_mpi, relion_mask_create, relion_merge_particles, relion_motion_refine, relion_motion_refine_mpi, relion_movie_reconstruct, relion_mrc2vtk, relion_particle_reposition, relion_particle_select, relion_particle_subtract, relion_particle_subtract_mpi, relion_particle_symmetry_expand, relion_pipeliner, relion_plot_delocalisation, relion_postprocess, relion_postprocess_mpi, relion_prepare_subtomo, relion_preprocess, relion_preprocess_mpi, relion_project, relion_pseudotomo_expansion, relion_reconstruct, relion_reconstruct_mpi, relion_refine, relion_refine_mpi, relion_run_align_tiltseries, relion_run_align_tiltseries_mpi, relion_run_ctffind, relion_run_ctffind_mpi, relion_run_motioncorr, relion_run_motioncorr_mpi, relion_schemer, relion_stack_create, relion_star_datablock_ctfdat, relion_star_datablock_singlefiles, relion_star_datablock_stack, relion_star_handler, relion_star_loopheader, relion_star_plottable, relion_star_printtable, relion_suggest_tvalue, relion_tiltpair_plot, relion_tomo_Wiener_divide, relion_tomo_add_spheres, relion_tomo_align, relion_tomo_align_mpi, relion_tomo_bin_stack, relion_tomo_catalogue_tomos, relion_tomo_compute_FCC, relion_tomo_convert_projections, relion_tomo_dark_erase, relion_tomo_delete_blobs, relion_tomo_discover_motif, relion_tomo_find_fiducials, relion_tomo_find_lattice, relion_tomo_fit_bfactors, relion_tomo_fit_blobs_3d, relion_tomo_import_coordinates, relion_tomo_local_particle_refine, relion_tomo_make_optimisation_set, relion_tomo_powspec, relion_tomo_predict_tilt_series, relion_tomo_reconstruct_particle, relion_tomo_reconstruct_particle_mpi, relion_tomo_reconstruct_tomogram, relion_tomo_reconstruct_tomogram_mpi, relion_tomo_refine_ctf, relion_tomo_refine_ctf_mpi, relion_tomo_refine_mag, relion_tomo_sample_manifold, relion_tomo_split_optics, relion_tomo_subtomo, relion_tomo_subtomo_mpi, relion_tomo_taper, relion_tomo_template_pick, relion_tomo_test, relion_tomo_tomo_ctf, relion_trace_amyloids.py Description-md5: a54d8123a50edf0f9102f8a3c05de97f Section: science Priority: optional Filename: pool/main/r/relion/relion_5.1.0+dfsg-1_amd64.deb Size: 22399320 MD5sum: 4a287c54afd799fa4b4e2c6341c2921f SHA256: d8a92eddf8cb8f23afbc1caee6d98e6867a98bcdb8656ea49b0b6efc18ed0e31 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt relion=5.1.0+dfsg-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202608291513~1.6.0-23-g1172a6e5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt relion=5.1.0+dfsg-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.12.107+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.107-1 (2026-08-29) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpsqjbhy51 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpsqjbhy51 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/14', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/14', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmpsqjbhy51/tmp/scripts/ 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpsqjbhy51/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'apt-get', 'update'] 0m4.4s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.8 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7736 kB] Fetched 18.7 MB in 3s (6788 kB/s) Reading package lists... 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'apt-get', 'update'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'apt-get', '-yf', 'dist-upgrade'] 0m5.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: init-system-helpers 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 37.3 kB of archives. After this operation, 1024 B of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 init-system-helpers all 1.69+nmu3 [37.3 kB] Fetched 37.3 kB in 0s (1505 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4958 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.69+nmu3_all.deb ... Unpacking init-system-helpers (1.69+nmu3) over (1.69+nmu2) ... Setting up init-system-helpers (1.69+nmu3) ... 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'apt-get', '-yf', 'dist-upgrade'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.1s DUMP: e2b4759258e403389604e10903871abe - 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.1s INFO: Running scripts post_setup 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/post_setup_dummy_users'] 0m6.6s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/post_setup_dummy_users'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/post_setup_forbid_home'] 0m6.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/post_setup_forbid_home'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/post_setup_force-unsafe-io'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/post_setup_minimize'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/post_setup_minimize'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/post_setup_squeeze-backports'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/post_setup_zz_backports'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/post_setup_zz_backports'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'apt-get', 'clean'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'apt-get', 'clean'] 0m6.7s DEBUG: Recording chroot state 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.3s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.3-1 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.2.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.2.1-1 install ok installed libblkid1:amd64 libblkid1 2.42.3-1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-6 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-6 install ok installed libc6:amd64 libc6 2.43-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.2.0-2 install ok installed libmount1:amd64 libmount1 2.42.3-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.3-1 install ok installed libssl3t64:amd64 libssl3t64 3.6.4-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 262-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 262-1 install ok installed libuuid1:amd64 libuuid1 2.42.3-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.3-1 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed mount mount 2.42.3-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.4-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed perl-base perl-base 5.42.3-1 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026c-1 install ok installed util-linux util-linux 2.42.3-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'dpkg-divert', '--list'] 0m7.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'dpkg-divert', '--list'] 0m7.3s INFO: Running scripts is_testable 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/is_testable_uninstallable'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/is_testable_uninstallable'] 0m7.3s INFO: apt-cache does not know about any of the requested packages 0m7.3s INFO: Running scripts pre_test 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_test_exceptions'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_test_exceptions'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_test_root_password'] 0m7.4s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_test_root_password'] 0m7.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51'] 0m7.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51'] 0m8.2s DEBUG: No broken symlinks as far as we can find. 0m8.2s INFO: Running scripts pre_install 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_install_database-server'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_install_database-server'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_install_exceptions'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_install_exceptions'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_install_extras'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_install_extras'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_install_log_alternatives'] 0m8.2s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' dpkg-divert: warning: diverting file '/usr/bin/update-alternatives' from an Essential package with rename is dangerous, use --no-rename 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_install_log_alternatives'] 0m8.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51'] 0m8.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51'] 0m8.9s DEBUG: No broken symlinks as far as we can find. 0m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'apt-cache', 'policy'] 0m9.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'apt-cache', 'policy'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'apt-cache', 'policy', 'relion'] 0m9.9s DUMP: relion: Installed: (none) Candidate: 5.1.0+dfsg-1 Version table: 5.1.0+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'apt-cache', 'policy', 'relion'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'apt-get', '-y', 'install', 'relion=5.1.0+dfsg-1'] 0m23.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: ctffind ibverbs-providers libamd-comgr3 libamdhip64-6 libbrotli1 libcbor0.10 libclang-common-21-dev libcom-err2 libcurl4t64 libdeflate0 libdrm-amdgpu1 libdrm-common libdrm2 libedit2 libelf1t64 libesmtp6 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1 libfabric1 libffi8 libfftw3-double3 libfftw3-single3 libfido2-1 libfuse3-4 libgdbm-compat4t64 libgdbm6t64 libgomp1 libgssapi-krb5-2 libhsa-runtime64-1 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs1 libidn2-0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap2 liblerc4 libllvm21 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi40 libpciaccess0 libpcre2-32-0 libperl5.42 libpmix2t64 libpng16-16t64 libprrte-bin libprrte4 libpsl5t64 libpsm2-2 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib librdmacm1t64 libreadline8t64 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsqlite3-0 libssh2-1t64 libsystemd-shared libtiff6 libucc1 libucx0 libunistring5 libwebp7 libwxbase3.2-1t64 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2-16 libxnvctrl0 libz3-4 libze1 media-types mpi-default-bin netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client openssh-common pci.ids perl perl-modules-5.42 prrte-common python3 python3-minimal python3.14 python3.14-minimal readline-common systemd Suggested packages: libfftw3-bin libfftw3-dev fuse3 gdbm-l10n krb5-doc krb5-user libhwloc-contrib-plugins sensible-utils libapparmor1 libarchive13t64 libbpf1 libcryptsetup12 libdw1t64 libfdisk1 libkmod2 libmicrohttpd12t64 libp11-kit0 libpwquality1 libqrencode4 libtss2-esys-3.0.2-0t64 libtss2-mu-4.0.1-0t64 libtss2-rc0t64 libtss2-tcti-device0t64 opencl-icd gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python3.14-venv python3.14-doc binutils binfmt-support readline-doc systemd-container systemd-homed systemd-imds systemd-userdbd systemd-boot systemd-report systemd-resolved systemd-repart polkitd Recommended packages: libclang-rt-21-dev ca-certificates krb5-locales libldap-common libgpm2 libpmix-dev publicsuffix libsasl2-modules xauth ghostscript pbzip2 xz-utils zstd default-dbus-system-bus | dbus-system-bus linux-sysctl-defaults systemd-timesyncd | time-daemon systemd-tpm systemd-cryptsetup libapparmor1 libbpf1 libcryptsetup12 libkmod2 The following NEW packages will be installed: ctffind ibverbs-providers libamd-comgr3 libamdhip64-6 libbrotli1 libcbor0.10 libclang-common-21-dev libcom-err2 libcurl4t64 libdeflate0 libdrm-amdgpu1 libdrm-common libdrm2 libedit2 libelf1t64 libesmtp6 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1 libfabric1 libffi8 libfftw3-double3 libfftw3-single3 libfido2-1 libfuse3-4 libgdbm-compat4t64 libgdbm6t64 libgomp1 libgssapi-krb5-2 libhsa-runtime64-1 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs1 libidn2-0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap2 liblerc4 libllvm21 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi40 libpciaccess0 libpcre2-32-0 libperl5.42 libpmix2t64 libpng16-16t64 libprrte-bin libprrte4 libpsl5t64 libpsm2-2 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib librdmacm1t64 libreadline8t64 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsqlite3-0 libssh2-1t64 libsystemd-shared libtiff6 libucc1 libucx0 libunistring5 libwebp7 libwxbase3.2-1t64 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2-16 libxnvctrl0 libz3-4 libze1 media-types mpi-default-bin netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client openssh-common pci.ids perl perl-modules-5.42 prrte-common python3 python3-minimal python3.14 python3.14-minimal readline-common relion systemd 0 upgraded, 109 newly installed, 0 to remove and 0 not upgraded. Need to get 127 MB of archives. After this operation, 609 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libsystemd-shared amd64 262-1 [2789 kB] Get:2 http://deb.debian.org/debian sid/main amd64 systemd amd64 262-1 [3477 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.8.4-2 [130 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libpython3.14-minimal amd64 3.14.7-4 [902 kB] Get:5 http://deb.debian.org/debian sid/main amd64 python3.14-minimal amd64 3.14.7-4 [2713 kB] Get:6 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.14.7-3 [25.3 kB] Get:7 http://deb.debian.org/debian sid/main amd64 media-types all 14.0.0 [30.8 kB] Get:8 http://deb.debian.org/debian sid/main amd64 netbase all 6.6 [10.3 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.8.0-2 [32.5 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:11 http://deb.debian.org/debian sid/main amd64 readline-common all 8.3-4 [74.8 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.53.4-2 [974 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpython3.14-stdlib amd64 3.14.7-4 [2362 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3.14 amd64 3.14.7-4 [861 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.14.7-3 [8252 B] Get:17 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.14.7-3 [26.0 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libcbor0.10 amd64 0.10.2-2.2 [29.0 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libfido2-1 amd64 1.17.0-2 [80.5 kB] Get:20 http://deb.debian.org/debian sid/main amd64 openssh-common amd64 1:10.5p1-1 [499 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libedit2 amd64 3.1-20260512-1 [93.6 kB] Get:22 http://deb.debian.org/debian sid/main amd64 openssh-client amd64 1:10.5p1-1 [734 kB] Get:23 http://deb.debian.org/debian sid/main amd64 perl-modules-5.42 all 5.42.3-1 [3213 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.26-1+b2 [77.7 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.26-1+b2 [52.0 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libperl5.42 amd64 5.42.3-1 [4272 kB] Get:27 http://deb.debian.org/debian sid/main amd64 perl amd64 5.42.3-1 [266 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 16.2.0-3 [151 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libfftw3-single3 amd64 3.3.11-1 [738 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.25-1 [48.0 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b3 [32.2 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:3.1.3-4 [213 kB] Get:33 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.2.0+ds-1 [203 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.6.0-0.1 [116 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.6.0-0.1 [349 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.7.2-1 [383 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.17.0-1 [68.1 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libngtcp2-16 amd64 1.24.0-1 [145 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.2.0-4+b1 [312 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.22.1-3 [31.1 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.4-1+b1 [19.5 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.22.1-3 [79.0 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:44 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.22.1-3 [335 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.22.1-3 [137 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-5 [109 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-11 [17.2 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-11 [55.2 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libldap2 amd64 2.6.14+dfsg-2 [200 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.70.0-1 [92.7 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-ossl0 amd64 1.24.0-1 [26.5 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.23.3-1 [61.7 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-6 [253 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.23.0~rc1-2 [466 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libpcre2-32-0 amd64 10.48-3 [282 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libwxbase3.2-1t64 amd64 3.2.11+dfsg1-2 [1201 kB] Get:58 http://deb.debian.org/debian sid/main amd64 ctffind amd64 4.1.14-3 [353 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libnl-3-200 amd64 3.12.0-2+b1 [62.2 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libnl-route-3-200 amd64 3.12.0-2+b1 [200 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libibverbs1 amd64 65.0-1 [67.9 kB] Get:62 http://deb.debian.org/debian sid/main amd64 ibverbs-providers amd64 65.0-1 [424 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libxml2-16 amd64 2.15.4+dfsg-1 [683 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libz3-4 amd64 4.13.3-1.1 [8644 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libllvm21 amd64 1:21.1.8-13 [28.3 MB] Get:66 http://deb.debian.org/debian sid/main amd64 libclang-common-21-dev amd64 1:21.1.8-13 [769 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libamd-comgr3 amd64 7.0.2+dfsg-3 [13.9 MB] Get:68 http://deb.debian.org/debian sid/main amd64 libdrm-common all 2.4.134-3 [7860 B] Get:69 http://deb.debian.org/debian sid/main amd64 libdrm2 amd64 2.4.134-3 [38.5 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libdrm-amdgpu1 amd64 2.4.134-3 [23.3 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libelf1t64 amd64 0.196-1 [61.2 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libnuma1 amd64 2.0.19-1+b2 [22.0 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libhsa-runtime64-1 amd64 6.4.3+dfsg-5 [678 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libamdhip64-6 amd64 6.4.3-5 [9385 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libesmtp6 amd64 1.1.0-3.2+b2 [59.3 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libevent-core-2.1-7t64 amd64 2.1.13-stable-1 [133 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.13-stable-1 [53.8 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get:79 http://deb.debian.org/debian sid/main amd64 librdmacm1t64 amd64 65.0-1 [79.0 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libfabric1 amd64 2.1.0-1.1+b2 [716 kB] Get:81 http://deb.debian.org/debian sid/main amd64 libfftw3-double3 amd64 3.3.11-1 [713 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libfuse3-4 amd64 3.18.3-1 [109 kB] Get:83 http://deb.debian.org/debian sid/main amd64 pci.ids all 0.0~2026.09.23-1 [287 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libpciaccess0 amd64 0.19-2 [18.5 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.11-1+b2 [20.7 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.5-2+b1 [28.2 kB] Get:87 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.13-1 [346 kB] Get:89 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.13-1 [829 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b4 [50.7 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libxnvctrl0 amd64 535.171.04-1+b3 [14.1 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libze1 amd64 1.32.0-1 [648 kB] Get:93 http://deb.debian.org/debian sid/main amd64 ocl-icd-libopencl1 amd64 2.3.4-1+b1 [42.8 kB] Get:94 http://deb.debian.org/debian sid/main amd64 libhwloc15 amd64 2.15.0-2 [178 kB] Get:95 http://deb.debian.org/debian sid/main amd64 libhwloc-plugins amd64 2.15.0-2 [22.4 kB] Get:96 http://deb.debian.org/debian sid/main amd64 libibumad3 amd64 65.0-1 [29.6 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libibmad5 amd64 65.0-1 [44.2 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libpmix2t64 amd64 7.0.0~git.20260918-1 [832 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libucx0 amd64 1.22.0-1 [1064 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libucc1 amd64 1.9.0-1 [379 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libopenmpi40 amd64 5.0.11-2 [2106 kB] Get:102 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.58-1 [289 kB] Get:103 http://deb.debian.org/debian sid/main amd64 libprrte4 amd64 5.0.0~git.20260918.1-2 [711 kB] Get:104 http://deb.debian.org/debian sid/main amd64 prrte-common all 5.0.0~git.20260918.1-2 [50.2 kB] Get:105 http://deb.debian.org/debian sid/main amd64 libprrte-bin amd64 5.0.0~git.20260918.1-2 [42.4 kB] Get:106 http://deb.debian.org/debian sid/main amd64 openmpi-common all 5.0.11-2 [31.4 kB] Get:107 http://deb.debian.org/debian sid/main amd64 openmpi-bin amd64 5.0.11-2 [182 kB] Get:108 http://deb.debian.org/debian sid/main amd64 mpi-default-bin amd64 1.20 [2720 B] Get:109 http://deb.debian.org/debian sid/main amd64 relion amd64 5.1.0+dfsg-1 [22.4 MB] Fetched 127 MB in 1s (90.5 MB/s) Selecting previously unselected package libsystemd-shared:amd64. 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Selecting previously unselected package libucc1:amd64. Preparing to unpack .../83-libucc1_1.9.0-1_amd64.deb ... Unpacking libucc1:amd64 (1.9.0-1) ... Selecting previously unselected package libopenmpi40:amd64. Preparing to unpack .../84-libopenmpi40_5.0.11-2_amd64.deb ... Unpacking libopenmpi40:amd64 (5.0.11-2) ... Selecting previously unselected package libpng16-16t64:amd64. Preparing to unpack .../85-libpng16-16t64_1.6.58-1_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.58-1) ... Selecting previously unselected package libprrte4:amd64. Preparing to unpack .../86-libprrte4_5.0.0~git.20260918.1-2_amd64.deb ... Unpacking libprrte4:amd64 (5.0.0~git.20260918.1-2) ... Selecting previously unselected package prrte-common. Preparing to unpack .../87-prrte-common_5.0.0~git.20260918.1-2_all.deb ... Unpacking prrte-common (5.0.0~git.20260918.1-2) ... Selecting previously unselected package libprrte-bin. Preparing to unpack .../88-libprrte-bin_5.0.0~git.20260918.1-2_amd64.deb ... Unpacking libprrte-bin (5.0.0~git.20260918.1-2) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../89-openmpi-common_5.0.11-2_all.deb ... Unpacking openmpi-common (5.0.11-2) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../90-openmpi-bin_5.0.11-2_amd64.deb ... Unpacking openmpi-bin (5.0.11-2) ... Selecting previously unselected package mpi-default-bin. Preparing to unpack .../91-mpi-default-bin_1.20_amd64.deb ... Unpacking mpi-default-bin (1.20) ... Selecting previously unselected package relion. Preparing to unpack .../92-relion_5.1.0+dfsg-1_amd64.deb ... Unpacking relion (5.1.0+dfsg-1) ... Setting up media-types (14.0.0) ... Setting up libsharpyuv0:amd64 (1.6.0-0.1) ... Setting up libxau6:amd64 (1:1.0.11-1+b2) ... Setting up libxdmcp6:amd64 (1:1.1.5-2+b1) ... Setting up libkeyutils1:amd64 (1.6.3-6+b2) ... Setting up pci.ids (0.0~2026.09.23-1) ... Setting up libxcb1:amd64 (1.17.0-2+b2) ... Setting up liblerc4:amd64 (4.2.0+ds-1) ... Setting up libgdbm6t64:amd64 (1.26-1+b2) ... Setting up libgdbm-compat4t64:amd64 (1.26-1+b2) ... Setting up libcbor0.10:amd64 (0.10.2-2.2) ... Setting up libxml2-16:amd64 (2.15.4+dfsg-1) ... Setting up libbrotli1:amd64 (1.2.0-4+b1) ... Setting up libedit2:amd64 (3.1-20260512-1) ... Setting up libsqlite3-0:amd64 (3.53.4-2) ... Setting up libnghttp2-14:amd64 (1.70.0-1) ... Setting up libibumad3:amd64 (65.0-1) ... Setting up libdeflate0:amd64 (1.25-1) ... Setting up systemd (262-1) ... Created symlink '/etc/systemd/system/multi-user.target.wants/remote-fs.target' → '/usr/lib/systemd/system/remote-fs.target'. Created symlink '/etc/systemd/system/sysinit.target.wants/systemd-pstore.service' → '/usr/lib/systemd/system/systemd-pstore.service'. Created symlink '/etc/systemd/system/autovt@.service' → '/usr/lib/systemd/system/getty@.service'. Created symlink '/etc/systemd/system/getty.target.wants/getty@tty1.service' → '/usr/lib/systemd/system/getty@.service'. Initializing machine ID from random generator. Creating group 'lpadmin' with GID 999. Creating group 'systemd-journal' with GID 998. Creating group 'systemd-network' with GID 997. Creating user 'systemd-network' (systemd Network Management) with UID 997 and GID 997. [ESC][0;1;31m"/home" already exists and is not a directory.[ESC][0m Setting up libesmtp6:amd64 (1.1.0-3.2+b2) ... Setting up libibmad5:amd64 (65.0-1) ... Setting up libcom-err2:amd64 (1.47.4-1+b1) ... Setting up libgomp1:amd64 (16.2.0-3) ... Setting up libjbig0:amd64 (2.1-6.1+b3) ... Setting up libze1:amd64 (1.32.0-1) ... Setting up libelf1t64:amd64 (0.196-1) ... Setting up libkrb5support0:amd64 (1.22.1-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-11) ... Setting up libz3-4:amd64 (4.13.3-1.1) ... Setting up libpcre2-32-0:amd64 (10.48-3) ... Setting up libjpeg62-turbo:amd64 (1:3.1.3-4) ... Setting up libx11-data (2:1.8.13-1) ... Setting up libunistring5:amd64 (1.4.2-1) ... Setting up libpng16-16t64:amd64 (1.6.58-1) ... Setting up libhwloc15:amd64 (2.15.0-2) ... Setting up libncursesw6:amd64 (6.6+20260608-2) ... Setting up libk5crypto3:amd64 (1.22.1-3) ... Setting up libfftw3-double3:amd64 (3.3.11-1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-11) ... Setting up libnghttp3-9:amd64 (1.17.0-1) ... Setting up libwebp7:amd64 (1.6.0-0.1) ... Setting up libffi8:amd64 (3.8.0-2) ... Setting up libnuma1:amd64 (2.0.19-1+b2) ... Setting up ocl-icd-libopencl1:amd64 (2.3.4-1+b1) ... Setting up libtiff6:amd64 (4.7.2-1) ... Setting up libnl-3-200:amd64 (3.12.0-2+b1) ... Setting up libpsm2-2 (11.2.185-2.1) ... Setting up openmpi-common (5.0.11-2) ... Setting up libx11-6:amd64 (2:1.8.13-1) ... Setting up netbase (6.6) ... Setting up libngtcp2-16:amd64 (1.24.0-1) ... Setting up libkrb5-3:amd64 (1.22.1-3) ... Setting up libevent-core-2.1-7t64:amd64 (2.1.13-stable-1) ... Setting up libclang-common-21-dev:amd64 (1:21.1.8-13) ... Setting up libssh2-1t64:amd64 (1.11.1-6) ... Setting up libfuse3-4:amd64 (3.18.3-1) ... Setting up perl-modules-5.42 (5.42.3-1) ... Setting up libfido2-1:amd64 (1.17.0-2) ... Setting up libdrm-common (2.4.134-3) ... Setting up readline-common (8.3-4) ... Setting up libldap2:amd64 (2.6.14+dfsg-2) ... Setting up prrte-common (5.0.0~git.20260918.1-2) ... Setting up libpciaccess0:amd64 (0.19-2) ... Setting up libfftw3-single3:amd64 (3.3.11-1) ... Setting up openssh-common (1:10.5p1-1) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.13-stable-1) ... Setting up openssh-client (1:10.5p1-1) ... Creating group '_ssh' with GID 996. Created symlink '/etc/systemd/user/sockets.target.wants/ssh-agent.socket' → '/usr/lib/systemd/user/ssh-agent.socket'. Setting up libxext6:amd64 (2:1.3.4-1+b4) ... Setting up libidn2-0:amd64 (2.3.8-5) ... Setting up libperl5.42:amd64 (5.42.3-1) ... Setting up libnl-route-3-200:amd64 (3.12.0-2+b1) ... Setting up libxnvctrl0:amd64 (535.171.04-1+b3) ... Setting up perl (5.42.3-1) ... Setting up libllvm21:amd64 (1:21.1.8-13) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-3) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up libdrm2:amd64 (2.4.134-3) ... Setting up libamd-comgr3:amd64 (7.0.2+dfsg-3) ... Setting up libdrm-amdgpu1:amd64 (2.4.134-3) ... Setting up libibverbs1:amd64 (65.0-1) ... Creating group 'rdma' with GID 995. Setting up ibverbs-providers:amd64 (65.0-1) ... Setting up libpython3.14-stdlib:amd64 (3.14.7-4) ... Setting up libpsl5t64:amd64 (0.23.3-1) ... Setting up libhwloc-plugins:amd64 (2.15.0-2) ... Setting up libpmix2t64:amd64 (7.0.0~git.20260918-1) ... Setting up libhsa-runtime64-1:amd64 (6.4.3+dfsg-5) ... Setting up librdmacm1t64:amd64 (65.0-1) ... Setting up python3.14 (3.14.7-4) ... Setting up libpython3-stdlib:amd64 (3.14.7-3) ... Setting up libfabric1:amd64 (2.1.0-1.1+b2) ... Setting up libprrte4:amd64 (5.0.0~git.20260918.1-2) ... Setting up libcurl4t64:amd64 (8.23.0~rc1-2) ... Setting up python3 (3.14.7-3) ... Setting up libamdhip64-6:amd64 (6.4.3-5) ... Setting up libwxbase3.2-1t64:amd64 (3.2.11+dfsg1-2) ... Setting up libprrte-bin (5.0.0~git.20260918.1-2) ... Setting up ctffind (4.1.14-3) ... Setting up libucx0:amd64 (1.22.0-1) ... Setting up libucc1:amd64 (1.9.0-1) ... Setting up libopenmpi40:amd64 (5.0.11-2) ... Setting up openmpi-bin (5.0.11-2) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up mpi-default-bin (1.20) ... Setting up relion (5.1.0+dfsg-1) ... Processing triggers for libc-bin (2.43-6) ... 0m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'apt-get', '-y', 'install', 'relion=5.1.0+dfsg-1'] 0m23.6s INFO: Running scripts post_install 0m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/post_install_exceptions'] 0m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/post_install_exceptions'] 0m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/post_install_log_alternatives'] 0m23.6s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=python3: piuparts=relion=5.1.0+dfsg-1: /usr/bin/update-alternatives --auto /usr/bin/python3 LOG-ALTERNATIVES: dpkg=perl: piuparts=relion=5.1.0+dfsg-1: /usr/bin/update-alternatives --remove rename /usr/bin/prename LOG-ALTERNATIVES: dpkg=openmpi-bin: piuparts=relion=5.1.0+dfsg-1: /usr/bin/update-alternatives --install /usr/bin/mpirun mpirun /usr/bin/mpirun.openmpi 50 --slave /usr/share/man/man1/mpirun.1.gz mpirun.1.gz /usr/share/man/man1/mpirun.openmpi.1.gz --slave /usr/bin/mpiexec mpiexec /usr/bin/mpiexec.openmpi --slave /usr/share/man/man1/mpiexec.1.gz mpiexec.1.gz /usr/share/man/man1/mpiexec.openmpi.1.gz LOG-ALTERNATIVES: dpkg=openmpi-bin: piuparts=relion=5.1.0+dfsg-1: /usr/bin/update-alternatives --install /usr/bin/mpicc mpi /usr/bin/mpicc.openmpi 50 --slave /usr/bin/mpic++ mpic++ /usr/bin/mpic++.openmpi --slave /usr/bin/mpicxx mpicxx /usr/bin/mpic++.openmpi --slave /usr/bin/mpiCC mpiCC /usr/bin/mpic++.openmpi --slave /usr/bin/mpif77 mpif77 /usr/bin/mpif77.openmpi --slave /usr/bin/mpif90 mpif90 /usr/bin/mpif90.openmpi --slave /usr/bin/mpifort mpifort /usr/bin/mpifort.openmpi --slave /usr/share/man/man1/mpicc.1.gz mpicc.1.gz /usr/share/man/man1/mpicc.openmpi.1.gz --slave /usr/share/man/man1/mpic++.1.gz mpic++.1.gz /usr/share/man/man1/mpic++.openmpi.1.gz --slave /usr/share/man/man1/mpicxx.1.gz mpicxx.1.gz /usr/share/man/man1/mpicxx.openmpi.1.gz --slave /usr/share/man/man1/mpiCC.1.gz mpiCC.1.gz /usr/share/man/man1/mpiCC.openmpi.1.gz --slave /usr/share/man/man1/mpif77.1.gz mpif77.1.gz /usr/share/man/man1/mpif77.openmpi.1.gz --slave /usr/share/man/man1/mpif90.1.gz mpif90.1.gz /usr/share/man/man1/mpif90.openmpi.1.gz --slave /usr/share/man/man1/mpifort.1.gz mpifort.1.gz /usr/share/man/man1/mpifort.openmpi.1.gz 0m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/post_install_log_alternatives'] 0m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'systemd-tmpfiles', '--cat-config'] 0m23.6s DUMP: # /usr/lib/tmpfiles.d/20-systemd-osc-context.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. L$ /etc/profile.d/80-systemd-osc-context.sh - - - - /usr/lib/systemd/profile.d/80-systemd-osc-context.sh # /usr/lib/tmpfiles.d/20-systemd-shell-extra.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. L$ /etc/profile.d/70-systemd-shell-extra.sh - - - - /usr/lib/systemd/profile.d/70-systemd-shell-extra.sh # /usr/lib/tmpfiles.d/20-systemd-ssh-generator.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. L$ /etc/ssh/ssh_config.d/20-systemd-ssh-proxy.conf - - - - /usr/lib/systemd/ssh_config.d/20-systemd-ssh-proxy.conf d /run/sshd 0755 # /usr/lib/tmpfiles.d/20-systemd-stub.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. # Copy systemd-stub provided metadata such as PCR signature and public key file # from initrd into /run/, so that it will survive the initrd stage C /run/systemd/stub/profile 0444 root root - /.extra/profile C /run/systemd/stub/os-release 0444 root root - /.extra/os-release C /run/systemd/stub/boot-secret 0400 root root - /.extra/boot-secret C /run/systemd/tpm2-pcr-signature.json 0444 root root - /.extra/tpm2-pcr-signature.json C /run/systemd/tpm2-pcr-public-key.pem 0444 root root - /.extra/tpm2-pcr-public-key.pem # /usr/lib/tmpfiles.d/20-systemd-varlink.conf # SPDX-License-Identifier: LGPL-2.1-or-later # See tmpfiles.d(5) for details. # Varlink AF_UNIX entrypoint socket inodes of relevant system services may be # linked into this directory, to make them "well-known". Typically, tools such # as the Varlink HTTP bridge expose services linked in here as public # interfaces. The symlink should be named after the Varlink interface to # expose. Interfaces that may be implemented by multiple services (such as # the generic "io.systemd.service") should not be symlinked here. d /run/varlink/registry/ 0755 root root # Socket activated services should use Symlinks= in the .socket unit file to # create these symlinks. If that's not applicable, consider creating the # symlinks via a tmpfiles.d/ snippet, like we do here, so that registration can # be influenced by the administrator. L /run/varlink/registry/io.systemd.Unit - - - - ../../systemd/io.systemd.Manager L /run/varlink/registry/io.systemd.Manager - - - - ../../systemd/io.systemd.Manager L /run/varlink/registry/io.systemd.Journal - - - - ../../systemd/journal/io.systemd.journal # /usr/lib/tmpfiles.d/credstore.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. d /etc/credstore 0700 root root d /etc/credstore.encrypted 0700 root root z /run/credstore 0700 root root z /run/credstore.encrypted 0700 root root # /usr/lib/tmpfiles.d/debian.conf # This file is part of the debianisation of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details # Type Path Mode UID GID Age Argument L /run/shm - - - - /dev/shm d /run/sendsigs.omit.d 0755 root root - d /run/lock 1777 root root - - L+ /etc/mtab - - - - ../proc/self/mounts L+ /etc/default/locale - - - - ../locale.conf L+ /etc/vconsole.conf - - - - default/keyboard C! /etc/nsswitch.conf - - - - C! /etc/pam.d - - - - C! /etc/issue - - - - # /usr/lib/tmpfiles.d/home.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. Q /home 0755 - - - q /srv 0755 - - - # /usr/lib/tmpfiles.d/journal-nocow.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. # Set the NOCOW attribute for directories of journal files. This flag # is inherited by their new files and sub-directories. Matters only # for btrfs filesystems. # # WARNING: Enabling the NOCOW attribute improves journal performance # substantially, but also disables the btrfs checksum logic. In # btrfs RAID filesystems the checksums are needed for rebuilding # corrupted files. Without checksums such rebuilds are not # possible. # # In a single-disk filesystem (or a filesystem without redundancy) # enabling the NOCOW attribute for journal files is safe, because # they have their own checksums and a rebuilding wouldn't be possible # in any case. h /var/log/journal - - - - +C h /var/log/journal/%m - - - - +C h /var/log/journal/remote - - - - +C # /usr/lib/tmpfiles.d/openssh-client.conf x /tmp/ssh-* z /usr/bin/ssh-agent 2755 root _ssh # /usr/lib/tmpfiles.d/passwd.conf # If a password operation is in progress and we lose power, stale lockfiles # can be left behind. Clear them on boot. r! /etc/gshadow.lock r! /etc/shadow.lock r! /etc/passwd.lock r! /etc/group.lock r! /etc/subuid.lock r! /etc/subgid.lock # /usr/lib/tmpfiles.d/provision.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. # Provision additional login messages from credentials, if they are set. Note # that these lines are NOPs if the credentials are not set or if the files # already exist. f^ /etc/motd.d/50-provision.conf - - - - login.motd f^ /etc/issue.d/50-provision.conf - - - - login.issue # Provision a /etc/hosts file from credentials. f^ /etc/hosts - - - - network.hosts # Provision SSH key for root d- /root :0700 root :root - d- /root/.ssh :0700 root :root - f^ /root/.ssh/authorized_keys :0600 root :root - ssh.authorized_keys.root # /usr/lib/tmpfiles.d/systemd-network.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. d$ /run/systemd/netif 0755 systemd-network systemd-network - d$ /run/systemd/netif/links 0755 systemd-network systemd-network - d$ /run/systemd/netif/leases 0755 systemd-network systemd-network - d$ /var/lib/systemd/network 0755 systemd-network systemd-network - # /usr/lib/tmpfiles.d/systemd-nologin.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5), systemd-user-sessions.service(8) and pam_nologin(8). f+! /run/nologin 0644 - - - "System is booting up. Unprivileged users are not permitted to log in yet. Please come back later. For technical details, see pam_nologin(8)." # /usr/lib/tmpfiles.d/systemd-pstore.conf # SPDX-License-Identifier: LGPL-2.1-or-later # # The systemd-pstore.service(1) archives the contents of /sys/fs/pstore # upon boot so that there is room for a subsequent dump. This service # is enabled with: # systemctl enable systemd-pstore # # With the service enabled, the kernel still needs to be configured # to write data into the pstore. The kernel has two parameters, # crash_kexec_post_notifiers and printk.always_kmsg_dump, that # control writes into pstore. # # The crash_kexec_post_notifiers parameter enables the kernel to write # dmesg (including stack trace) into pstore upon a panic even if kdump # is loaded, only needed if you want to use pstore with kdump. Without # this parameter, kdump could block writing to pstore for stability # reason. Note this increases the risk of kdump failure even if pstore # is not available. # # The printk.always_kmsg_dump parameter enables the kernel to write dmesg # upon a normal shutdown (shutdown, reboot, halt). # # To configure the kernel parameters, uncomment the appropriate # lines below. The value written is either 'Y' to enable the # kernel parameter, or 'N' to disable the kernel parameter. # # After making a change to this file, do: # systemd-tmpfiles --create path/to/tmpfiles.d/systemd-pstore.conf # # These changes are automatically applied on future re-boots. d /var/lib/systemd/pstore 0755 root root 14d #w- /sys/module/printk/parameters/always_kmsg_dump - - - - Y #w- /sys/module/kernel/parameters/crash_kexec_post_notifiers - - - - Y # /usr/lib/tmpfiles.d/systemd-tmp.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. # Exclude namespace mountpoints created with PrivateTmp=yes x /tmp/systemd-private-%b-* X /tmp/systemd-private-%b-*/tmp x /var/tmp/systemd-private-%b-* X /var/tmp/systemd-private-%b-*/tmp # Remove top-level private temporary directories on each boot R! /tmp/systemd-private-* R! /var/tmp/systemd-private-* # Handle lost systemd-coredump temp files. They could be lost on old filesystems, # for example, after hard reboot. x /var/lib/systemd/coredump/.#core*.%b* r! /var/lib/systemd/coredump/.#* # /usr/lib/tmpfiles.d/systemd.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. d /run/user 0755 root root - d /run/systemd/ask-password 0755 root root - d$ /run/systemd/seats 0755 root root - d$ /run/systemd/sessions 0755 root root - d$ /run/systemd/users 0755 root root - d /run/systemd/machines 0755 root root - d$ /run/systemd/shutdown 0755 root root - d /run/systemd/dissect-root 0000 root root - d /run/systemd/report.sign 0700 root root - d /run/log 0755 root root - z /run/log/journal 2755 root systemd-journal - - Z /run/log/journal/%m ~2750 root systemd-journal - - a+ /run/log/journal - - - - d:group::r-x,d:group:adm:r-x,group::r-x,group:adm:r-x A+ /run/log/journal/%m - - - - d:group:adm:r-x,group:adm:r-X z /var/log/journal 2755 root systemd-journal - - z /var/log/journal/%m 2755 root systemd-journal - - z /var/log/journal/%m/system.journal 0640 root systemd-journal - - a+ /var/log/journal - - - - d:group::r-x,d:group:adm:r-x,group::r-x,group:adm:r-x a+ /var/log/journal/%m - - - - d:group:adm:r-x,group:adm:r-x a+ /var/log/journal/%m/system.journal - - - - group:adm:r-- d /var/lib/systemd 0755 root root - d /var/lib/systemd/coredump 0755 root root 2w # Files and directories in /var/lib/systemd/ephemeral-trees are locked by pid 1 to prevent tmpfiles from # removing them, and tmpfiles is told to clean up anything in /var/lib/systemd/ephemeral-trees that isn't # locked unconditionally. d /var/lib/systemd/ephemeral-trees 0755 root root 0 d /var/lib/private 0700 root root - d /var/log/private 0700 root root - d /var/cache/private 0700 root root - # /usr/lib/tmpfiles.d/tmp.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. # Clear tmp directories separately, to make them easier to override q /tmp 1777 root root 10d q /var/tmp 1777 root root 30d # /usr/lib/tmpfiles.d/var.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. q /var 0755 - - - L /var/run - - - - ../run d /var/log 0755 - - - d /var/cache 0755 - - - d /var/lib 0755 - - - d /var/spool 0755 - - - # /usr/lib/tmpfiles.d/x11.conf # This file is part of systemd. # # systemd is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation; either version 2.1 of the License, or # (at your option) any later version. # See tmpfiles.d(5) for details. # Make sure these are created by default so that nobody else can # or empty them at startup D /tmp/.X11-unix 1777 root root 1h D /tmp/.ICE-unix 1777 root root 1h D /tmp/.XIM-unix 1777 root root 1h D /tmp/.font-unix 1777 root root 1h # Unlink the X11 lock files at boot, but exclude them from time-based cleanup later r! /tmp/.X[0-9]*-lock x /tmp/.X[0-9]*-lock 0m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'systemd-tmpfiles', '--cat-config'] 0m23.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51'] 0m24.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51'] 0m24.3s INFO: IGNORED broken symlink: /etc/vconsole.conf (flag L+ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 0m24.3s INFO: IGNORED broken symlink: /etc/default/locale (flag L+ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 0m24.9s INFO: IGNORED broken symlink: /run/varlink/registry/io.systemd.Journal (flag L systemd-tmpfiles snippet /usr/lib/tmpfiles.d/20-systemd-varlink.conf) 0m24.9s INFO: IGNORED broken symlink: /run/varlink/registry/io.systemd.Manager (flag L systemd-tmpfiles snippet /usr/lib/tmpfiles.d/20-systemd-varlink.conf) 0m24.9s INFO: IGNORED broken symlink: /run/varlink/registry/io.systemd.Unit (flag L systemd-tmpfiles snippet /usr/lib/tmpfiles.d/20-systemd-varlink.conf) 0m24.9s ERROR: WARN: Broken symlinks: /usr/bin/pcc.prrte -> pmixcc (libprrte-bin) /usr/lib/clang/21.1.8/lib -> ../../llvm-21/lib/clang/21/lib (libclang-common-21-dev:amd64) /usr/lib/clang/21/lib -> ../../llvm-21/lib/clang/21/lib (libclang-common-21-dev:amd64) 0m25.3s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', '-ac', '--ignore-obsolete'] 0m27.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', '-ac', '--ignore-obsolete'] 0m27.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m27.2s DUMP: 0.17.5+b5 0m27.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m27.2s INFO: Running adequate version 0.17.5+b5 now. 0m27.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'relion'] 0m28.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'relion'] 0m28.4s INFO: Running scripts pre_remove 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m30.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m30.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m30.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m30.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_remove_exceptions'] 0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/pre_remove_exceptions'] 0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m30.4s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed bsdutils bsdutils 1:2.42.3-1 install ok installed coreutils coreutils 9.10-1 install ok installed ctffind ctffind 4.1.14-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed findutils findutils 4.11.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed ibverbs-providers:amd64 ibverbs-providers 65.0-1 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libamd-comgr3:amd64 libamd-comgr3 7.0.2+dfsg-3 install ok installed libamdhip64-6:amd64 libamdhip64-6 6.4.3-5 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.2.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.2.1-1 install ok installed libblkid1:amd64 libblkid1 2.42.3-1 install ok installed libbrotli1:amd64 libbrotli1 1.2.0-4+b1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-6 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-6 install ok installed libc6:amd64 libc6 2.43-6 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcbor0.10:amd64 libcbor0.10 0.10.2-2.2 install ok installed libclang-common-21-dev:amd64 libclang-common-21-dev 1:21.1.8-13 install ok installed libcom-err2:amd64 libcom-err2 1.47.4-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.23.0~rc1-2 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libdeflate0:amd64 libdeflate0 1.25-1 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.134-3 install ok installed libdrm-common libdrm-common 2.4.134-3 install ok installed libdrm2:amd64 libdrm2 2.4.134-3 install ok installed libedit2:amd64 libedit2 3.1-20260512-1 install ok installed libelf1t64:amd64 libelf1t64 0.196-1 install ok installed libesmtp6:amd64 libesmtp6 1.1.0-3.2+b2 install ok installed libevent-core-2.1-7t64:amd64 libevent-core-2.1-7t64 2.1.13-stable-1 install ok installed libevent-pthreads-2.1-7t64:amd64 libevent-pthreads-2.1-7t64 2.1.13-stable-1 install ok installed libexpat1:amd64 libexpat1 2.8.4-2 install ok installed libfabric1:amd64 libfabric1 2.1.0-1.1+b2 install ok installed libffi8:amd64 libffi8 3.8.0-2 install ok installed libfftw3-double3:amd64 libfftw3-double3 3.3.11-1 install ok installed libfftw3-single3:amd64 libfftw3-single3 3.3.11-1 install ok installed libfido2-1:amd64 libfido2-1 1.17.0-2 install ok installed libfuse3-4:amd64 libfuse3-4 3.18.3-1 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1+b2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1+b2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgomp1:amd64 libgomp1 16.2.0-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.22.1-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed libhsa-runtime64-1:amd64 libhsa-runtime64-1 6.4.3+dfsg-5 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.15.0-2 install ok installed libhwloc15:amd64 libhwloc15 2.15.0-2 install ok installed libibmad5:amd64 libibmad5 65.0-1 install ok installed libibumad3:amd64 libibumad3 65.0-1 install ok installed libibverbs1:amd64 libibverbs1 65.0-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-5 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b3 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:3.1.3-4 install ok installed libk5crypto3:amd64 libk5crypto3 1.22.1-3 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6+b2 install ok installed libkrb5-3:amd64 libkrb5-3 1.22.1-3 install ok installed libkrb5support0:amd64 libkrb5support0 1.22.1-3 install ok installed libldap2:amd64 libldap2 2.6.14+dfsg-2 install ok installed liblerc4:amd64 liblerc4 4.2.0+ds-1 install ok installed libllvm21:amd64 libllvm21 1:21.1.8-13 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmd0:amd64 libmd0 1.2.0-2 install ok installed libmount1:amd64 libmount1 2.42.3-1 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.70.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.17.0-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.24.0-1 install ok installed libngtcp2-crypto-ossl0:amd64 libngtcp2-crypto-ossl0 1.24.0-1 install ok installed libnl-3-200:amd64 libnl-3-200 3.12.0-2+b1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.12.0-2+b1 install ok installed libnuma1:amd64 libnuma1 2.0.19-1+b2 install ok installed libopenmpi40:amd64 libopenmpi40 5.0.11-2 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpciaccess0:amd64 libpciaccess0 0.19-2 install ok installed libpcre2-32-0:amd64 libpcre2-32-0 10.48-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3 install ok installed libperl5.42:amd64 libperl5.42 5.42.3-1 install ok installed libpmix2t64:amd64 libpmix2t64 7.0.0~git.20260918-1 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.58-1 install ok installed libprrte-bin libprrte-bin 5.0.0~git.20260918.1-2 install ok installed libprrte4:amd64 libprrte4 5.0.0~git.20260918.1-2 install ok installed libpsl5t64:amd64 libpsl5t64 0.23.3-1 install ok installed libpsm2-2 libpsm2-2 11.2.185-2.1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.14.7-3 install ok installed libpython3.14-minimal:amd64 libpython3.14-minimal 3.14.7-4 install ok installed libpython3.14-stdlib:amd64 libpython3.14-stdlib 3.14.7-4 install ok installed librdmacm1t64:amd64 librdmacm1t64 65.0-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-11 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-11 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.6.0-0.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.3-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.53.4-2 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-6 install ok installed libssl3t64:amd64 libssl3t64 3.6.4-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsystemd-shared:amd64 libsystemd-shared 262-1 install ok installed libsystemd0:amd64 libsystemd0 262-1 install ok installed libtiff6:amd64 libtiff6 4.7.2-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libucc1:amd64 libucc1 1.9.0-1 install ok installed libucx0:amd64 libucx0 1.22.0-1 install ok installed libudev1:amd64 libudev1 262-1 install ok installed libunistring5:amd64 libunistring5 1.4.2-1 install ok installed libuuid1:amd64 libuuid1 2.42.3-1 install ok installed libwebp7:amd64 libwebp7 1.6.0-0.1 install ok installed libwxbase3.2-1t64:amd64 libwxbase3.2-1t64 3.2.11+dfsg1-2 install ok installed libx11-6:amd64 libx11-6 2:1.8.13-1 install ok installed libx11-data libx11-data 2:1.8.13-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1+b2 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-2+b1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b4 install ok installed libxml2-16:amd64 libxml2-16 2.15.4+dfsg-1 install ok installed libxnvctrl0:amd64 libxnvctrl0 535.171.04-1+b3 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libz3-4:amd64 libz3-4 4.13.3-1.1 install ok installed libze1:amd64 libze1 1.32.0-1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.3-1 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed media-types media-types 14.0.0 install ok installed mount mount 2.42.3-1 install ok installed mpi-default-bin mpi-default-bin 1.20 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed netbase netbase 6.6 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.3.4-1+b1 install ok installed openmpi-bin openmpi-bin 5.0.11-2 install ok installed openmpi-common openmpi-common 5.0.11-2 install ok installed openssh-client openssh-client 1:10.5p1-1 install ok installed openssh-common openssh-common 1:10.5p1-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.4-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed pci.ids pci.ids 0.0~2026.09.23-1 install ok installed perl perl 5.42.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed perl-modules-5.42 perl-modules-5.42 5.42.3-1 install ok installed prrte-common prrte-common 5.0.0~git.20260918.1-2 install ok installed python3 python3 3.14.7-3 install ok installed python3-minimal python3-minimal 3.14.7-3 install ok installed python3.14 python3.14 3.14.7-4 install ok installed python3.14-minimal python3.14-minimal 3.14.7-4 install ok installed readline-common readline-common 8.3-4 install ok installed relion relion 5.1.0+dfsg-1 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.5.0-1 install ok installed systemd systemd 262-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026c-1 install ok installed util-linux util-linux 2.42.3-1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'apt-get', 'remove', '--allow-remove-essential', 'ctffind', 'ibverbs-providers:amd64', 'libamd-comgr3:amd64', 'libamdhip64-6:amd64', 'libbrotli1:amd64', 'libcbor0.10:amd64', 'libclang-common-21-dev:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libdeflate0:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libesmtp6:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libexpat1:amd64', 'libfabric1:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libfido2-1:amd64', 'libfuse3-4:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhsa-runtime64-1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libidn2-0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'libllvm21:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libpciaccess0:amd64', 'libpcre2-32-0:amd64', 'libperl5.42:amd64', 'libpmix2t64:amd64', 'libpng16-16t64:amd64', 'libprrte-bin', 'libprrte4:amd64', 'libpsl5t64:amd64', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'librdmacm1t64:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsystemd-shared:amd64', 'libtiff6:amd64', 'libucc1:amd64', 'libucx0:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libwxbase3.2-1t64:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2-16:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'libze1:amd64', 'media-types', 'mpi-default-bin', 'netbase', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssh-common', 'pci.ids', 'perl', 'perl-modules-5.42', 'prrte-common', 'python3', 'python3-minimal', 'python3.14', 'python3.14-minimal', 'readline-common', 'systemd', 'relion'] 0m33.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: ctffind ibverbs-providers libamd-comgr3 libamdhip64-6 libbrotli1 libcbor0.10 libclang-common-21-dev libcom-err2 libcurl4t64 libdeflate0 libdrm-amdgpu1 libdrm-common libdrm2 libedit2 libelf1t64 libesmtp6 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1 libfabric1 libffi8 libfftw3-double3 libfftw3-single3 libfido2-1 libfuse3-4 libgdbm-compat4t64 libgdbm6t64 libgomp1 libgssapi-krb5-2 libhsa-runtime64-1 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs1 libidn2-0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap2 liblerc4 libllvm21 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi40 libpciaccess0 libpcre2-32-0 libperl5.42 libpmix2t64 libpng16-16t64 libprrte-bin libprrte4 libpsl5t64 libpsm2-2 libpython3-stdlib libpython3.14-minimal libpython3.14-stdlib librdmacm1t64 libreadline8t64 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsqlite3-0 libssh2-1t64 libsystemd-shared libtiff6 libucc1 libucx0 libunistring5 libwebp7 libwxbase3.2-1t64 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2-16 libxnvctrl0 libz3-4 libze1 media-types mpi-default-bin netbase ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client openssh-common pci.ids perl perl-modules-5.42 prrte-common python3 python3-minimal python3.14 python3.14-minimal readline-common relion systemd 0 upgraded, 0 newly installed, 109 to remove and 0 not upgraded. After this operation, 609 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10767 files and directories currently installed.) Removing relion (5.1.0+dfsg-1) ... Removing ctffind (4.1.14-3) ... Removing mpi-default-bin (1.20) ... Removing openmpi-bin (5.0.11-2) ... Removing libopenmpi40:amd64 (5.0.11-2) ... Removing libfabric1:amd64 (2.1.0-1.1+b2) ... Removing ibverbs-providers:amd64 (65.0-1) ... Removing libucc1:amd64 (1.9.0-1) ... Removing libucx0:amd64 (1.22.0-1) ... Removing libamdhip64-6:amd64 (6.4.3-5) ... Removing libamd-comgr3:amd64 (7.0.2+dfsg-3) ... Removing libwxbase3.2-1t64:amd64 (3.2.11+dfsg1-2) ... Removing libcurl4t64:amd64 (8.23.0~rc1-2) ... Removing libbrotli1:amd64 (1.2.0-4+b1) ... Removing openssh-client (1:10.5p1-1) ... Removing openssh-common (1:10.5p1-1) ... Removing libfido2-1:amd64 (1.17.0-2) ... Removing libcbor0.10:amd64 (0.10.2-2.2) ... Removing libclang-common-21-dev:amd64 (1:21.1.8-13) ... Removing libgssapi-krb5-2:amd64 (1.22.1-3) ... Removing libkrb5-3:amd64 (1.22.1-3) ... Removing libcom-err2:amd64 (1.47.4-1+b1) ... Removing libtiff6:amd64 (4.7.2-1) ... Removing libdeflate0:amd64 (1.25-1) ... Removing libhsa-runtime64-1:amd64 (6.4.3+dfsg-5) ... Removing libdrm-amdgpu1:amd64 (2.4.134-3) ... Removing libdrm2:amd64 (2.4.134-3) ... Removing libdrm-common (2.4.134-3) ... Removing libllvm21:amd64 (1:21.1.8-13) ... Removing libedit2:amd64 (3.1-20260512-1) ... Removing libelf1t64:amd64 (0.196-1) ... Removing libprrte-bin (5.0.0~git.20260918.1-2) ... Removing libprrte4:amd64 (5.0.0~git.20260918.1-2) ... Removing libpmix2t64:amd64 (7.0.0~git.20260918-1) ... Removing libesmtp6:amd64 (1.1.0-3.2+b2) ... Removing libevent-pthreads-2.1-7t64:amd64 (2.1.13-stable-1) ... Removing libevent-core-2.1-7t64:amd64 (2.1.13-stable-1) ... Removing python3 (3.14.7-3) ... Removing python3.14 (3.14.7-4) ... Removing python3-minimal (3.14.7-3) ... Removing python3.14-minimal (3.14.7-4) ... Removing libexpat1:amd64 (2.8.4-2) ... Removing libpython3-stdlib:amd64 (3.14.7-3) ... Removing libpython3.14-stdlib:amd64 (3.14.7-4) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.8.0-2) ... Removing libfftw3-double3:amd64 (3.3.11-1) ... Removing libfftw3-single3:amd64 (3.3.11-1) ... Removing libfuse3-4:amd64 (3.18.3-1) ... Removing perl (5.42.3-1) ... Removing libperl5.42:amd64 (5.42.3-1) ... Removing libgdbm-compat4t64:amd64 (1.26-1+b2) ... Removing libgdbm6t64:amd64 (1.26-1+b2) ... Removing libgomp1:amd64 (16.2.0-3) ... Removing libhwloc-plugins:amd64 (2.15.0-2) ... Removing libhwloc15:amd64 (2.15.0-2) ... Removing libibmad5:amd64 (65.0-1) ... Removing libibumad3:amd64 (65.0-1) ... Removing librdmacm1t64:amd64 (65.0-1) ... Removing libibverbs1:amd64 (65.0-1) ... Removing libpsl5t64:amd64 (0.23.3-1) ... Removing libidn2-0:amd64 (2.3.8-5) ... Removing libjbig0:amd64 (2.1-6.1+b3) ... Removing libjpeg62-turbo:amd64 (1:3.1.3-4) ... Removing libk5crypto3:amd64 (1.22.1-3) ... Removing libkeyutils1:amd64 (1.6.3-6+b2) ... Removing libkrb5support0:amd64 (1.22.1-3) ... Removing libldap2:amd64 (2.6.14+dfsg-2) ... Removing liblerc4:amd64 (4.2.0+ds-1) ... Removing libncursesw6:amd64 (6.6+20260608-2) ... Removing libnghttp2-14:amd64 (1.70.0-1) ... Removing libnghttp3-9:amd64 (1.17.0-1) ... Removing libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Removing libngtcp2-16:amd64 (1.24.0-1) ... Removing libnl-route-3-200:amd64 (3.12.0-2+b1) ... Removing libnl-3-200:amd64 (3.12.0-2+b1) ... Removing libpsm2-2 (11.2.185-2.1) ... Removing libnuma1:amd64 (2.0.19-1+b2) ... Removing libpciaccess0:amd64 (0.19-2) ... Removing libpcre2-32-0:amd64 (10.48-3) ... Removing libpng16-16t64:amd64 (1.6.58-1) ... Removing libpython3.14-minimal:amd64 (3.14.7-4) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsasl2-2:amd64 (2.1.28+dfsg1-11) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-11) ... Removing libwebp7:amd64 (1.6.0-0.1) ... Removing libsharpyuv0:amd64 (1.6.0-0.1) ... Removing libsqlite3-0:amd64 (3.53.4-2) ... Removing libssh2-1t64:amd64 (1.11.1-6) ... Removing systemd (262-1) ... Removing libsystemd-shared:amd64 (262-1) ... Removing libunistring5:amd64 (1.4.2-1) ... Removing libxnvctrl0:amd64 (535.171.04-1+b3) ... Removing libxext6:amd64 (2:1.3.4-1+b4) ... Removing libx11-6:amd64 (2:1.8.13-1) ... Removing libx11-data (2:1.8.13-1) ... Removing libxcb1:amd64 (1.17.0-2+b2) ... Removing libxau6:amd64 (1:1.0.11-1+b2) ... Removing libxdmcp6:amd64 (1:1.1.5-2+b1) ... Removing libxml2-16:amd64 (2.15.4+dfsg-1) ... Removing libz3-4:amd64 (4.13.3-1.1) ... Removing libze1:amd64 (1.32.0-1) ... Removing media-types (14.0.0) ... Removing netbase (6.6) ... Removing ocl-icd-libopencl1:amd64 (2.3.4-1+b1) ... Removing openmpi-common (5.0.11-2) ... Removing pci.ids (0.0~2026.09.23-1) ... Removing perl-modules-5.42 (5.42.3-1) ... Removing prrte-common (5.0.0~git.20260918.1-2) ... Removing readline-common (8.3-4) ... Processing triggers for libc-bin (2.43-6) ... 0m33.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'apt-get', 'remove', '--allow-remove-essential', 'ctffind', 'ibverbs-providers:amd64', 'libamd-comgr3:amd64', 'libamdhip64-6:amd64', 'libbrotli1:amd64', 'libcbor0.10:amd64', 'libclang-common-21-dev:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libdeflate0:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libesmtp6:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libexpat1:amd64', 'libfabric1:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libfido2-1:amd64', 'libfuse3-4:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhsa-runtime64-1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libidn2-0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'libllvm21:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libpciaccess0:amd64', 'libpcre2-32-0:amd64', 'libperl5.42:amd64', 'libpmix2t64:amd64', 'libpng16-16t64:amd64', 'libprrte-bin', 'libprrte4:amd64', 'libpsl5t64:amd64', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'librdmacm1t64:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsystemd-shared:amd64', 'libtiff6:amd64', 'libucc1:amd64', 'libucx0:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libwxbase3.2-1t64:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2-16:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'libze1:amd64', 'media-types', 'mpi-default-bin', 'netbase', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssh-common', 'pci.ids', 'perl', 'perl-modules-5.42', 'prrte-common', 'python3', 'python3-minimal', 'python3.14', 'python3.14-minimal', 'readline-common', 'systemd', 'relion'] 0m33.0s INFO: Running scripts post_remove 0m33.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/post_remove_exceptions'] 0m33.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/post_remove_exceptions'] 0m33.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'dpkg', '--purge', 'ctffind', 'ibverbs-providers:amd64', 'libamd-comgr3:amd64', 'libamdhip64-6:amd64', 'libbrotli1:amd64', 'libcbor0.10:amd64', 'libclang-common-21-dev:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libdeflate0:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libesmtp6:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libexpat1:amd64', 'libfabric1:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libfido2-1:amd64', 'libfuse3-4:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhsa-runtime64-1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libidn2-0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'libllvm21:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libpciaccess0:amd64', 'libpcre2-32-0:amd64', 'libperl5.42:amd64', 'libpmix2t64:amd64', 'libpng16-16t64:amd64', 'libprrte-bin', 'libprrte4:amd64', 'libpsl5t64:amd64', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'librdmacm1t64:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsystemd-shared:amd64', 'libtiff6:amd64', 'libucc1:amd64', 'libucx0:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libwxbase3.2-1t64:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2-16:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'libze1:amd64', 'media-types', 'mpi-default-bin', 'netbase', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssh-common', 'pci.ids', 'perl', 'perl-modules-5.42', 'prrte-common', 'python3', 'python3-minimal', 'python3.14', 'python3.14-minimal', 'readline-common', 'systemd'] 0m33.2s DUMP: dpkg: warning: ignoring request to remove ctffind which is not installed (Reading database ... 5011 files and directories currently installed.) Purging configuration files for ibverbs-providers:amd64 (65.0-1) ... dpkg: warning: ignoring request to remove libamd-comgr3 which is not installed dpkg: warning: ignoring request to remove libamdhip64-6 which is not installed dpkg: warning: ignoring request to remove libbrotli1 which is not installed dpkg: warning: ignoring request to remove libcbor0.10 which is not installed dpkg: warning: ignoring request to remove libclang-common-21-dev which is not installed dpkg: warning: ignoring request to remove libcom-err2 which is not installed dpkg: warning: ignoring request to remove libcurl4t64 which is not installed dpkg: warning: ignoring request to remove libdeflate0 which is not installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which is not installed dpkg: warning: ignoring request to remove libdrm-common which is not installed dpkg: warning: ignoring request to remove libdrm2 which is not installed dpkg: warning: ignoring request to remove libedit2 which is not installed dpkg: warning: ignoring request to remove libelf1t64 which is not installed dpkg: warning: ignoring request to remove libesmtp6 which is not installed dpkg: warning: ignoring request to remove libevent-core-2.1-7t64 which is not installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-7t64 which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libfabric1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libfftw3-double3 which is not installed dpkg: warning: ignoring request to remove libfftw3-single3 which is not installed dpkg: warning: ignoring request to remove libfido2-1 which is not installed dpkg: warning: ignoring request to remove libfuse3-4 which is not installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which is not installed dpkg: warning: ignoring request to remove libgdbm6t64 which is not installed dpkg: warning: ignoring request to remove libgomp1 which is not installed Purging configuration files for libgssapi-krb5-2:amd64 (1.22.1-3) ... dpkg: warning: ignoring request to remove libhsa-runtime64-1 which is not installed dpkg: warning: ignoring request to remove libhwloc-plugins which is not installed dpkg: warning: ignoring request to remove libhwloc15 which is not installed dpkg: warning: ignoring request to remove libibmad5 which is not installed dpkg: warning: ignoring request to remove libibumad3 which is not installed dpkg: warning: ignoring request to remove libibverbs1 which is not installed dpkg: warning: ignoring request to remove libidn2-0 which is not installed dpkg: warning: ignoring request to remove libjbig0 which is not installed dpkg: warning: ignoring request to remove libjpeg62-turbo which is not installed dpkg: warning: ignoring request to remove libk5crypto3 which is not installed dpkg: warning: ignoring request to remove libkeyutils1 which is not installed dpkg: warning: ignoring request to remove libkrb5-3 which is not installed dpkg: warning: ignoring request to remove libkrb5support0 which is not installed dpkg: warning: ignoring request to remove libldap2 which is not installed dpkg: warning: ignoring request to remove liblerc4 which is not installed dpkg: warning: ignoring request to remove libllvm21 which is not installed dpkg: warning: ignoring request to remove libncursesw6 which is not installed dpkg: warning: ignoring request to remove libnghttp2-14 which is not installed dpkg: warning: ignoring request to remove libnghttp3-9 which is not installed dpkg: warning: ignoring request to remove libngtcp2-16 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-ossl0 which is not installed Purging configuration files for libnl-3-200:amd64 (3.12.0-2+b1) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which is not installed dpkg: warning: ignoring request to remove libnuma1 which is not installed dpkg: warning: ignoring request to remove libopenmpi40 which is not installed dpkg: warning: ignoring request to remove libpciaccess0 which is not installed dpkg: warning: ignoring request to remove libpcre2-32-0 which is not installed dpkg: warning: ignoring request to remove libperl5.42 which is not installed dpkg: warning: ignoring request to remove libpmix2t64 which is not installed dpkg: warning: ignoring request to remove libpng16-16t64 which is not installed Purging configuration files for libprrte-bin (5.0.0~git.20260918.1-2) ... dpkg: warning: ignoring request to remove libprrte4 which is not installed dpkg: warning: ignoring request to remove libpsl5t64 which is not installed dpkg: warning: ignoring request to remove libpsm2-2 which is not installed dpkg: warning: ignoring request to remove libpython3-stdlib which is not installed Purging configuration files for libpython3.14-minimal:amd64 (3.14.7-4) ... dpkg: warning: ignoring request to remove libpython3.14-stdlib which is not installed dpkg: warning: ignoring request to remove librdmacm1t64 which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove libsasl2-2 which is not installed dpkg: warning: ignoring request to remove libsasl2-modules-db which is not installed dpkg: warning: ignoring request to remove libsharpyuv0 which is not installed dpkg: warning: ignoring request to remove libsqlite3-0 which is not installed dpkg: warning: ignoring request to remove libssh2-1t64 which is not installed dpkg: warning: ignoring request to remove libsystemd-shared which is not installed dpkg: warning: ignoring request to remove libtiff6 which is not installed dpkg: warning: ignoring request to remove libucc1 which is not installed dpkg: warning: ignoring request to remove libucx0 which is not installed dpkg: warning: ignoring request to remove libunistring5 which is not installed dpkg: warning: ignoring request to remove libwebp7 which is not installed dpkg: warning: ignoring request to remove libwxbase3.2-1t64 which is not installed dpkg: warning: ignoring request to remove libx11-6 which is not installed dpkg: warning: ignoring request to remove libx11-data which is not installed dpkg: warning: ignoring request to remove libxau6 which is not installed dpkg: warning: ignoring request to remove libxcb1 which is not installed dpkg: warning: ignoring request to remove libxdmcp6 which is not installed dpkg: warning: ignoring request to remove libxext6 which is not installed dpkg: warning: ignoring request to remove libxml2-16 which is not installed dpkg: warning: ignoring request to remove libxnvctrl0 which is not installed dpkg: warning: ignoring request to remove libz3-4 which is not installed dpkg: warning: ignoring request to remove libze1 which is not installed Purging configuration files for media-types (14.0.0) ... dpkg: warning: ignoring request to remove mpi-default-bin which is not installed Purging configuration files for netbase (6.6) ... dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which is not installed Purging configuration files for openmpi-bin (5.0.11-2) ... dpkg: warning: ignoring request to remove openmpi-common which is not installed Purging configuration files for openssh-client (1:10.5p1-1) ... dpkg: warning: ignoring request to remove openssh-common which is not installed dpkg: warning: ignoring request to remove pci.ids which is not installed Purging configuration files for perl (5.42.3-1) ... dpkg: warning: ignoring request to remove perl-modules-5.42 which is not installed dpkg: warning: ignoring request to remove prrte-common which is not installed Purging configuration files for python3 (3.14.7-3) ... dpkg: warning: ignoring request to remove python3-minimal which is not installed dpkg: warning: ignoring request to remove python3.14 which is not installed Purging configuration files for python3.14-minimal (3.14.7-4) ... Purging configuration files for readline-common (8.3-4) ... Purging configuration files for systemd (262-1) ... 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'dpkg', '--purge', 'ctffind', 'ibverbs-providers:amd64', 'libamd-comgr3:amd64', 'libamdhip64-6:amd64', 'libbrotli1:amd64', 'libcbor0.10:amd64', 'libclang-common-21-dev:amd64', 'libcom-err2:amd64', 'libcurl4t64:amd64', 'libdeflate0:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libesmtp6:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libexpat1:amd64', 'libfabric1:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libfido2-1:amd64', 'libfuse3-4:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhsa-runtime64-1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libidn2-0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'libllvm21:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libpciaccess0:amd64', 'libpcre2-32-0:amd64', 'libperl5.42:amd64', 'libpmix2t64:amd64', 'libpng16-16t64:amd64', 'libprrte-bin', 'libprrte4:amd64', 'libpsl5t64:amd64', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.14-minimal:amd64', 'libpython3.14-stdlib:amd64', 'librdmacm1t64:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsystemd-shared:amd64', 'libtiff6:amd64', 'libucc1:amd64', 'libucx0:amd64', 'libunistring5:amd64', 'libwebp7:amd64', 'libwxbase3.2-1t64:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2-16:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'libze1:amd64', 'media-types', 'mpi-default-bin', 'netbase', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssh-common', 'pci.ids', 'perl', 'perl-modules-5.42', 'prrte-common', 'python3', 'python3-minimal', 'python3.14', 'python3.14-minimal', 'readline-common', 'systemd'] 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'dpkg', '--purge', 'relion'] 0m33.2s DUMP: dpkg: warning: ignoring request to remove relion which is not installed 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'dpkg', '--purge', 'relion'] 0m33.2s INFO: Running scripts post_purge 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/post_purge_exceptions'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/post_purge_exceptions'] 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'dpkg', '--purge', '--pending'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'dpkg', '--purge', '--pending'] 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'dpkg', '--remove', '--pending'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'dpkg', '--remove', '--pending'] 0m33.2s INFO: Running scripts post_test 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/post_test_exceptions'] 0m33.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'tmp/scripts/post_test_exceptions'] 0m33.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51'] 0m33.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51'] 0m33.7s INFO: IGNORED broken symlink: /etc/vconsole.conf (flag L+ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 0m33.7s INFO: IGNORED broken symlink: /etc/default/locale (flag L+ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 0m33.9s INFO: IGNORED broken symlink: /run/varlink/registry/io.systemd.Journal (flag L systemd-tmpfiles snippet /usr/lib/tmpfiles.d/20-systemd-varlink.conf) 0m33.9s INFO: IGNORED broken symlink: /run/varlink/registry/io.systemd.Manager (flag L systemd-tmpfiles snippet /usr/lib/tmpfiles.d/20-systemd-varlink.conf) 0m33.9s INFO: IGNORED broken symlink: /run/varlink/registry/io.systemd.Unit (flag L systemd-tmpfiles snippet /usr/lib/tmpfiles.d/20-systemd-varlink.conf) 0m33.9s DEBUG: No broken symlinks as far as we can find. 0m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'dpkg-divert', '--list'] 0m33.9s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'dpkg-divert', '--list'] 0m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'apt-get', 'clean'] 0m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51', 'apt-get', 'clean'] 0m33.9s DEBUG: Recording chroot state 0m34.3s INFO: IGNORED PATH@1: /home (flag Q systemd-tmpfiles snippet /usr/lib/tmpfiles.d/home.conf) 0m34.3s INFO: IGNORED PATH@1: /var/ (flag q systemd-tmpfiles snippet /usr/lib/tmpfiles.d/var.conf) 0m34.3s INFO: IGNORED PATH@1: /var/lib/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/var.conf) 0m34.3s INFO: IGNORED PATH@1: /var/lib/systemd/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 0m34.3s INFO: IGNORED PATH@1: /var/cache/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/var.conf) 0m34.3s INFO: IGNORED PATH@1: /var/log/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/var.conf) 0m34.3s INFO: IGNORED PATH@1: /var/spool/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/var.conf) 0m34.3s INFO: IGNORED PATH@1: /var/tmp/ (flag q systemd-tmpfiles snippet /usr/lib/tmpfiles.d/tmp.conf) 0m34.3s INFO: IGNORED PATH@1: /etc/issue (flag C! systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 0m34.3s INFO: IGNORED PATH@1: /etc/nsswitch.conf (flag C! systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 0m34.3s INFO: IGNORED PATH@1: /etc/pam.d/ (flag C! systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 0m34.4s INFO: IGNORED PATH@1: /root/ (flag d- systemd-tmpfiles snippet /usr/lib/tmpfiles.d/provision.conf) 0m34.4s INFO: IGNORED PATH@1: /run/lock/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 0m34.4s INFO: IGNORED PATH@1: /tmp/ (flag q systemd-tmpfiles snippet /usr/lib/tmpfiles.d/tmp.conf) 0m34.4s INFO: IGNORED PATH@1: /srv/ (flag q systemd-tmpfiles snippet /usr/lib/tmpfiles.d/home.conf) 0m34.4s INFO: IGNORED PATH@2: /home (flag Q systemd-tmpfiles snippet /usr/lib/tmpfiles.d/home.conf) 0m34.4s INFO: IGNORED PATH@2: /var/ (flag q systemd-tmpfiles snippet /usr/lib/tmpfiles.d/var.conf) 0m34.4s INFO: IGNORED PATH@2: /var/lib/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/var.conf) 0m34.4s INFO: IGNORED PATH@2: /var/lib/private/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 0m34.4s INFO: IGNORED PATH@2: /var/lib/systemd/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 0m34.4s INFO: IGNORED PATH@2: /var/cache/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/var.conf) 0m34.4s INFO: IGNORED PATH@2: /var/cache/private/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 0m34.4s INFO: IGNORED PATH@2: /var/log/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/var.conf) 0m34.4s INFO: IGNORED PATH@2: /var/log/private/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 0m34.4s INFO: IGNORED PATH@2: /var/spool/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/var.conf) 0m34.4s INFO: IGNORED PATH@2: /var/tmp/ (flag q systemd-tmpfiles snippet /usr/lib/tmpfiles.d/tmp.conf) 0m34.4s INFO: IGNORED PATH@2: /etc/vconsole.conf (flag L+ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 0m34.4s INFO: IGNORED PATH@2: /etc/issue (flag C! systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 0m34.4s INFO: IGNORED PATH@2: /etc/nsswitch.conf (flag C! systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 0m34.4s INFO: IGNORED PATH@2: /etc/default/locale (flag L+ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 0m34.4s INFO: IGNORED PATH@2: /etc/pam.d/ (flag C! systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 0m34.5s INFO: IGNORED PATH@2: /root/ (flag d- systemd-tmpfiles snippet /usr/lib/tmpfiles.d/provision.conf) 0m34.5s INFO: IGNORED PATH@2: /root/.ssh/ (flag d- systemd-tmpfiles snippet /usr/lib/tmpfiles.d/provision.conf) 0m34.5s INFO: IGNORED PATH@2: /run/log/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 0m34.5s INFO: IGNORED PATH@2: /run/user/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 0m34.5s INFO: IGNORED PATH@2: /run/systemd/report.sign/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 0m34.5s INFO: IGNORED PATH@2: /run/systemd/dissect-root/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 0m34.5s INFO: IGNORED PATH@2: /run/systemd/shutdown/ (flag d$ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 0m34.5s INFO: IGNORED PATH@2: /run/systemd/machines/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 0m34.5s INFO: IGNORED PATH@2: /run/systemd/users/ (flag d$ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 0m34.5s INFO: IGNORED PATH@2: /run/systemd/sessions/ (flag d$ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 0m34.5s INFO: IGNORED PATH@2: /run/systemd/seats/ (flag d$ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 0m34.5s INFO: IGNORED PATH@2: /run/systemd/ask-password/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd.conf) 0m34.5s INFO: IGNORED PATH@2: /run/systemd/netif/ (flag d$ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd-network.conf) 0m34.5s INFO: IGNORED PATH@2: /run/systemd/netif/leases/ (flag d$ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd-network.conf) 0m34.5s INFO: IGNORED PATH@2: /run/systemd/netif/links/ (flag d$ systemd-tmpfiles snippet /usr/lib/tmpfiles.d/systemd-network.conf) 0m34.5s INFO: IGNORED PATH@2: /run/sendsigs.omit.d/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 0m34.5s INFO: IGNORED PATH@2: /run/varlink/registry/io.systemd.Journal (flag L systemd-tmpfiles snippet /usr/lib/tmpfiles.d/20-systemd-varlink.conf) 0m34.5s INFO: IGNORED PATH@2: /run/varlink/registry/io.systemd.Manager (flag L systemd-tmpfiles snippet /usr/lib/tmpfiles.d/20-systemd-varlink.conf) 0m34.5s INFO: IGNORED PATH@2: /run/varlink/registry/io.systemd.Unit (flag L systemd-tmpfiles snippet /usr/lib/tmpfiles.d/20-systemd-varlink.conf) 0m34.5s INFO: IGNORED PATH@2: /run/sshd/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/20-systemd-ssh-generator.conf) 0m34.5s INFO: IGNORED PATH@2: /run/lock/ (flag d systemd-tmpfiles snippet /usr/lib/tmpfiles.d/debian.conf) 0m34.5s INFO: IGNORED PATH@2: /tmp/ (flag q systemd-tmpfiles snippet /usr/lib/tmpfiles.d/tmp.conf) 0m34.5s INFO: IGNORED PATH@2: /tmp/.font-unix/ (flag D systemd-tmpfiles snippet /usr/lib/tmpfiles.d/x11.conf) 0m34.5s INFO: IGNORED PATH@2: /tmp/.XIM-unix/ (flag D systemd-tmpfiles snippet /usr/lib/tmpfiles.d/x11.conf) 0m34.5s INFO: IGNORED PATH@2: /tmp/.ICE-unix/ (flag D systemd-tmpfiles snippet /usr/lib/tmpfiles.d/x11.conf) 0m34.5s INFO: IGNORED PATH@2: /tmp/.X11-unix/ (flag D systemd-tmpfiles snippet /usr/lib/tmpfiles.d/x11.conf) 0m34.5s INFO: IGNORED PATH@2: /srv/ (flag q systemd-tmpfiles snippet /usr/lib/tmpfiles.d/home.conf) 0m34.5s INFO: PASS: Installation and purging test. 0m35.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51/dev/shm'] 0m35.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51/dev/shm'] 0m35.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51/dev/console'] 0m35.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51/dev/console'] 0m35.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51/dev/ptmx'] 0m35.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51/dev/ptmx'] 0m35.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51/dev/pts'] 0m35.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51/dev/pts'] 0m35.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51/proc'] 0m35.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51/proc'] 0m35.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51'] 0m35.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpsqjbhy51'] 0m35.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpsqjbhy51 0m35.2s INFO: PASS: All tests. 0m35.2s INFO: piuparts run ends. ret=0 End: 2026-09-24 15:11:36 GMT