Start: 2026-04-27 15:57:30 GMT Package: snakemake Version: 7.32.4-11 Installed-Size: 1557 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-configargparse, python3-connection-pool, python3-datrie, python3-docutils, python3-git, python3-humanfriendly, python3-jinja2, python3-jsonschema, python3-nbformat, python3-packaging, python3-platformdirs, python3-psutil, python3-pulp, python3-requests, python3-retry, python3-smart-open, python3-stopit, python3-tabulate, python3-throttler, python3-toposort, python3-wrapt, python3-yaml, python3-yte, python3:any, ca-certificates, libjs-bootstrap, libjs-jquery Recommends: cwltool, imagemagick, python3-pytz, python3-yappi, python3-rpy2, python3-pygments, python3-azure-storage, python3-biopython, python3-boto3, python3-botocore, python3-dropbox, python3-flask, python3-ftputil, python3-irodsclient, python3-kubernetes, python3-urllib3 Suggests: slurm-client, snakemake-doc Description: pythonic workflow management system Homepage: https://snakemake.readthedocs.io/ Description-md5: 7f9c57469c639aa1e67301b2a7ed865e Section: science Priority: optional Filename: pool/main/s/snakemake/snakemake_7.32.4-11_all.deb Size: 314452 MD5sum: 542ce797444c8ec09e1492d86afa2c06 SHA256: fcc0275bc037d97271ef67b976e27712d768902c002aca7627c7ef47b8796fab Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt snakemake=7.32.4-11 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211856~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts-log-alternatives --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid --no-upgrade-test --apt snakemake=7.32.4-11 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 6.1.0-44-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.164-1 (2026-03-09) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmph6k9m0b6 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmph6k9m0b6 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts-log-alternatives to /srv/piuparts.debian.org/tmp/tmph6k9m0b6/tmp/scripts/ 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmph6k9m0b6/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'apt-get', 'update'] 0m4.1s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [187 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.4 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7574 kB] Fetched 18.2 MB in 3s (6484 kB/s) Reading package lists... 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'apt-get', 'update'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'apt-get', '-yf', 'dist-upgrade'] 0m6.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: bsdutils libblkid1 libbsd0 libgmp10 libmount1 libsmartcols1 libuuid1 libzstd1 login mount util-linux 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3139 kB of archives. After this operation, 5120 B disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.42-5 [33.0 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.42-5 [172 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.42-5 [213 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.42-5 [144 kB] Get:5 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.42-5 [1222 kB] Get:6 http://deb.debian.org/debian sid/main amd64 mount amd64 2.42-5 [163 kB] Get:7 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.42-5 [105 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5+b2 [560 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.7+dfsg-3+b2 [305 kB] Get:10 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.42-5 [90.4 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libbsd0 amd64 0.12.2-2+b2 [132 kB] Fetched 3139 kB in 0s (19.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4902 files and directories currently installed.) Preparing to unpack .../libuuid1_2.42-5_amd64.deb ... Unpacking libuuid1:amd64 (2.42-5) over (2.42-4) ... Setting up libuuid1:amd64 (2.42-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4902 files and directories currently installed.) Preparing to unpack .../libblkid1_2.42-5_amd64.deb ... Unpacking libblkid1:amd64 (2.42-5) over (2.42-4) ... Setting up libblkid1:amd64 (2.42-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4902 files and directories currently installed.) Preparing to unpack .../libmount1_2.42-5_amd64.deb ... Unpacking libmount1:amd64 (2.42-5) over (2.42-4) ... Setting up libmount1:amd64 (2.42-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4902 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.42-5_amd64.deb ... Unpacking libsmartcols1:amd64 (2.42-5) over (2.42-4) ... Setting up libsmartcols1:amd64 (2.42-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4902 files and directories currently installed.) Preparing to unpack .../util-linux_2.42-5_amd64.deb ... Unpacking util-linux (2.42-5) over (2.42-4) ... Setting up util-linux (2.42-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4902 files and directories currently installed.) Preparing to unpack .../mount_2.42-5_amd64.deb ... Unpacking mount (2.42-5) over (2.42-4) ... Preparing to unpack .../login_1%3a4.16.0-2+really2.42-5_amd64.deb ... Unpacking login (1:4.16.0-2+really2.42-5) over (1:4.16.0-2+really2.42-4) ... Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-5+b2_amd64.deb ... Unpacking libgmp10:amd64 (2:6.3.0+dfsg-5+b2) over (2:6.3.0+dfsg-5+b1) ... Setting up libgmp10:amd64 (2:6.3.0+dfsg-5+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4902 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.7+dfsg-3+b2_amd64.deb ... Unpacking libzstd1:amd64 (1.5.7+dfsg-3+b2) over (1.5.7+dfsg-3+b1) ... Setting up libzstd1:amd64 (1.5.7+dfsg-3+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4902 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.42-5_amd64.deb ... Unpacking bsdutils (1:2.42-5) over (1:2.42-4) ... Preparing to unpack .../libbsd0_0.12.2-2+b2_amd64.deb ... Unpacking libbsd0:amd64 (0.12.2-2+b2) over (0.12.2-2+b1) ... Setting up bsdutils (1:2.42-5) ... Setting up mount (2.42-5) ... Setting up libbsd0:amd64 (0.12.2-2+b2) ... Setting up login (1:4.16.0-2+really2.42-5) ... Processing triggers for libc-bin (2.42-15) ... 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'apt-get', '-yf', 'dist-upgrade'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.5s DUMP: 00a8e64a26ea79c746bc150400f89248 - 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.5s INFO: Running scripts post_setup 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/post_setup_dummy_users'] 0m7.6s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/post_setup_dummy_users'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/post_setup_forbid_home'] 0m7.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/post_setup_forbid_home'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/post_setup_minimize'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/post_setup_minimize'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/post_setup_zz_backports'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/post_setup_zz_backports'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'apt-get', 'clean'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'apt-get', 'clean'] 0m7.7s DEBUG: Recording chroot state 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.2s DUMP: install ok installed apt apt 3.2.0 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-2 install ok installed bsdutils bsdutils 1:2.42-5 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.7 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16-20260425-1 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.3.2-3 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.2.0 install ok installed libattr1:amd64 libattr1 1:2.5.2-4 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libblkid1:amd64 libblkid1 2.42-5 install ok installed libbsd0:amd64 libbsd0 0.12.2-2+b2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.42-15 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.42-15 install ok installed libc6:amd64 libc6 2.42-15 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.3-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.1-1+b1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.282+b3 install ok installed libgcc-s1:amd64 libgcc-s1 16-20260425-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.3-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b2 install ok installed libmount1:amd64 libmount1 2.42-5 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5+b1 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1+b1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2+b1 install ok installed libselinux1:amd64 libselinux1 3.10-1 install ok installed libsemanage-common libsemanage-common 3.10-1 install ok installed libsemanage2:amd64 libsemanage2 3.10-1 install ok installed libsepol2:amd64 libsepol2 3.10-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42-5 install ok installed libssl3t64:amd64 libssl3t64 3.6.2-1 install ok installed libstdc++6:amd64 libstdc++6 16-20260425-1 install ok installed libsystemd0:amd64 libsystemd0 260.1-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20251231-1 install ok installed libudev1:amd64 libudev1 260.1-1 install ok installed libuuid1:amd64 libuuid1 2.42-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-3+b2 install ok installed login login 1:4.16.0-2+really2.42-5 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed mount mount 2.42-5 install ok installed ncurses-base ncurses-base 6.6+20251231-1 install ok installed ncurses-bin ncurses-bin 6.6+20251231-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.2-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed perl-base perl-base 5.40.1-7+b1 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.3.0-5+b1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-4 install ok installed tzdata tzdata 2026b-1 install ok installed util-linux util-linux 2.42-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'dpkg-divert', '--list'] 0m8.2s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'dpkg-divert', '--list'] 0m8.2s INFO: Running scripts is_testable 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/is_testable_uninstallable'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/is_testable_uninstallable'] 0m8.2s INFO: apt-cache does not know about any of the requested packages 0m8.2s INFO: Running scripts pre_test 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_test_exceptions'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_test_exceptions'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_test_root_password'] 0m8.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_test_root_password'] 0m8.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6'] 0m8.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6'] 0m9.0s DEBUG: No broken symlinks as far as we can find. 0m9.0s INFO: Running scripts pre_install 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_install_database-server'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_install_database-server'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_install_exceptions'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_install_exceptions'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_install_extras'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_install_extras'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_install_log_alternatives'] 0m9.0s DUMP: Adding 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' dpkg-divert: warning: diverting file '/usr/bin/update-alternatives' from an Essential package with rename is dangerous, use --no-rename 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_install_log_alternatives'] 0m9.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6'] 0m9.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6'] 0m9.7s DEBUG: No broken symlinks as far as we can find. 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'apt-cache', 'policy'] 0m10.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'apt-cache', 'policy'] 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'apt-cache', 'policy', 'snakemake'] 0m10.7s DUMP: snakemake: Installed: (none) Candidate: 7.32.4-11 Version table: 7.32.4-11 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'apt-cache', 'policy', 'snakemake'] 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'apt-get', '-y', 'install', 'snakemake=7.32.4-11'] 0m33.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: ca-certificates coinor-cbc coinor-libcbc3.1 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common fonts-glyphicons-halflings git git-man libblas3 libbrotli1 libcom-err2 libcurl3t64-gnutls libdatrie1 liberror-perl libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgnutls30t64 libgssapi-krb5-2 libidn2-0 libjs-bootstrap libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libp11-kit0 libperl5.40 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libtasn1-6 libunistring5 libyaml-0-2 media-types netbase openssl perl perl-modules-5.40 python3 python3-attr python3-certifi python3-chardet python3-charset-normalizer python3-configargparse python3-connection-pool python3-datrie python3-decorator python3-docutils python3-dpath python3-fastjsonschema python3-git python3-gitdb python3-humanfriendly python3-idna python3-jinja2 python3-jsonschema python3-jsonschema-specifications python3-jupyter-core python3-markupsafe python3-minimal python3-nbformat python3-packaging python3-plac python3-platformdirs python3-psutil python3-pulp python3-pyparsing python3-referencing python3-requests python3-retry python3-roman-numerals python3-rpds-py python3-smart-open python3-smmap python3-stopit python3-tabulate python3-throttler python3-toposort python3-traitlets python3-urllib3 python3-wrapt python3-yaml python3-yte python3.13 python3.13-minimal readline-common sgml-base xml-core Suggested packages: gettext-base git-doc git-email git-gui gitk gitweb git-cvs git-svn gdbm-l10n gnutls-bin krb5-doc krb5-user sensible-utils perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python-attr-doc python-charset-normalizer-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-fastjsonschema-doc python-git-doc python-jinja2-doc python-jsonschema-doc python-jupyter-core-doc python3-pip python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-requests-doc python3-azure python3-azure-storage python-traitlets-doc python3-backports.zstd | python3-supported-min python3-brotli python3.13-venv python3.13-doc binutils binfmt-support readline-doc sgml-base-doc slurm-client snakemake-doc debhelper Recommended packages: patch less ssh-client javascript-common krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules libpaper-utils python3-pil python3-pygments python3-babel python3-fqdn python3-isoduration python3-json-pointer python3-rfc3339-validator python3-rfc3986-validator python3-rfc3987 python3-uritemplate python3-webcolors python3-backports.zstd | python3-supported-min python3-boto3 python3-paramiko cwltool imagemagick python3-pytz python3-yappi python3-rpy2 python3-azure-storage python3-biopython python3-botocore python3-dropbox python3-flask python3-ftputil python3-irodsclient python3-kubernetes The following NEW packages will be installed: ca-certificates coinor-cbc coinor-libcbc3.1 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common fonts-glyphicons-halflings git git-man libblas3 libbrotli1 libcom-err2 libcurl3t64-gnutls libdatrie1 liberror-perl libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgnutls30t64 libgssapi-krb5-2 libidn2-0 libjs-bootstrap libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libp11-kit0 libperl5.40 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libtasn1-6 libunistring5 libyaml-0-2 media-types netbase openssl perl perl-modules-5.40 python3 python3-attr python3-certifi python3-chardet python3-charset-normalizer python3-configargparse python3-connection-pool python3-datrie python3-decorator python3-docutils python3-dpath python3-fastjsonschema python3-git python3-gitdb python3-humanfriendly python3-idna python3-jinja2 python3-jsonschema python3-jsonschema-specifications python3-jupyter-core python3-markupsafe python3-minimal python3-nbformat python3-packaging python3-plac python3-platformdirs python3-psutil python3-pulp python3-pyparsing python3-referencing python3-requests python3-retry python3-roman-numerals python3-rpds-py python3-smart-open python3-smmap python3-stopit python3-tabulate python3-throttler python3-toposort python3-traitlets python3-urllib3 python3-wrapt python3-yaml python3-yte python3.13 python3.13-minimal readline-common sgml-base snakemake xml-core 0 upgraded, 108 newly installed, 0 to remove and 0 not upgraded. Need to get 44.5 MB of archives. After this operation, 193 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.8.0-1 [116 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.12-1 [866 kB] Get:3 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.12-1 [2267 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.9-3 [27.6 kB] Get:5 http://deb.debian.org/debian sid/main amd64 media-types all 14.0.0 [30.8 kB] Get:6 http://deb.debian.org/debian sid/main amd64 netbase all 6.5 [12.4 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.5.2-4 [25.2 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.6+20251231-1 [137 kB] Get:9 http://deb.debian.org/debian sid/main amd64 readline-common all 8.3-4 [74.8 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-9+b1 [918 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.12-1 [1974 kB] Get:13 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.12-1 [776 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.9-3 [10.5 kB] Get:15 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.9-3 [27.6 kB] Get:16 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.6.2-1 [1517 kB] Get:17 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20260223 [158 kB] Get:18 http://deb.debian.org/debian sid/main amd64 perl-modules-5.40 all 5.40.1-7 [3012 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.26-1+b2 [77.7 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.26-1+b2 [52.0 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libperl5.40 amd64 5.40.1-7+b1 [4319 kB] Get:22 http://deb.debian.org/debian sid/main amd64 perl amd64 5.40.1-7+b1 [264 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.1-7+b2 [206 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 16-20260425-1 [884 kB] Get:25 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.1-7+b2 [2546 kB] Get:26 http://deb.debian.org/debian sid/main amd64 coinor-libcoinutils3v5 amd64 2.11.12+ds-1+b2 [474 kB] Get:27 http://deb.debian.org/debian sid/main amd64 coinor-libosi1v5 amd64 0.108.11+ds-1+b2 [298 kB] Get:28 http://deb.debian.org/debian sid/main amd64 coinor-libclp1 amd64 1.17.10+ds-1+b2 [904 kB] Get:29 http://deb.debian.org/debian sid/main amd64 coinor-libcgl1 amd64 0.60.9+ds-1+b2 [436 kB] Get:30 http://deb.debian.org/debian sid/main amd64 coinor-libcbc3.1 amd64 2.10.13+ds-1 [724 kB] Get:31 http://deb.debian.org/debian sid/main amd64 coinor-cbc amd64 2.10.13+ds-1 [15.3 kB] Get:32 http://deb.debian.org/debian sid/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get:33 http://deb.debian.org/debian sid/main amd64 xml-core all 0.19 [20.1 kB] Get:34 http://deb.debian.org/debian sid/main amd64 docutils-common all 0.22.4+dfsg-1 [128 kB] Get:35 http://deb.debian.org/debian sid/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-7 [163 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.15.0-1 [67.2 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libngtcp2-16 amd64 1.22.1-1 [133 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.2.0-3 [320 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.8-4+b2 [109 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.26.2-2 [470 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.21.0-2+b1 [49.3 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.12-3 [1520 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.22.1-2+b1 [31.0 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.4-1 [19.2 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.22.1-2+b1 [78.9 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:48 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.22.1-2+b1 [336 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.22.1-2+b1 [137 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-11 [17.2 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-11 [55.2 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libldap2 amd64 2.6.10+dfsg-1+b1 [195 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.69.0-1 [89.0 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-gnutls8 amd64 1.22.1-1 [20.8 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.5-1 [59.9 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.1-2 [244 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libcurl3t64-gnutls amd64 8.20.0~rc3-1 [402 kB] Get:58 http://deb.debian.org/debian sid/main amd64 liberror-perl all 0.17030-1 [26.9 kB] Get:59 http://deb.debian.org/debian sid/main amd64 git-man all 1:2.53.0-1 [2326 kB] Get:60 http://deb.debian.org/debian sid/main amd64 git amd64 1:2.53.0-1 [9410 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.14-1+b1 [39.5 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libjs-bootstrap all 3.4.1+dfsg-7 [173 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-2+b1 [53.8 kB] Get:65 http://deb.debian.org/debian sid/main amd64 python3-attr all 26.1.0-1 [72.2 kB] Get:66 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2026.4.22+ds-1 [9684 B] Get:67 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:68 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer amd64 3.4.4-2 [171 kB] Get:69 http://deb.debian.org/debian sid/main amd64 python3-configargparse all 1.7-2 [31.4 kB] Get:70 http://deb.debian.org/debian sid/main amd64 python3-connection-pool all 0.0.3-2 [5584 B] Get:71 http://deb.debian.org/debian sid/main amd64 python3-datrie amd64 0.8.3-2+b1 [185 kB] Get:72 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get:73 http://deb.debian.org/debian sid/main amd64 python3-roman-numerals all 4.1.0-1 [9196 B] Get:74 http://deb.debian.org/debian sid/main amd64 python3-docutils all 0.22.4+dfsg-1 [433 kB] Get:75 http://deb.debian.org/debian sid/main amd64 python3-dpath all 2.2.0-2 [20.1 kB] Get:76 http://deb.debian.org/debian sid/main amd64 python3-fastjsonschema all 2.21.1-1 [22.4 kB] Get:77 http://deb.debian.org/debian sid/main amd64 python3-smmap all 6.0.0-1 [20.1 kB] Get:78 http://deb.debian.org/debian sid/main amd64 python3-gitdb all 4.0.12-1 [45.8 kB] Get:79 http://deb.debian.org/debian sid/main amd64 python3-git all 3.1.46-1 [147 kB] Get:80 http://deb.debian.org/debian sid/main amd64 python3-humanfriendly all 10.0-6 [85.6 kB] Get:81 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.11-1 [41.7 kB] Get:82 http://deb.debian.org/debian sid/main amd64 python3-markupsafe amd64 3.0.3-1+b1 [14.3 kB] Get:83 http://deb.debian.org/debian sid/main amd64 python3-jinja2 all 3.1.6-2 [106 kB] Get:84 http://deb.debian.org/debian sid/main amd64 python3-rpds-py amd64 0.30.0-1 [326 kB] Get:85 http://deb.debian.org/debian sid/main amd64 python3-referencing all 0.36.2-3 [23.9 kB] Get:86 http://deb.debian.org/debian sid/main amd64 python3-jsonschema-specifications all 2023.12.1-5 [9140 B] Get:87 http://deb.debian.org/debian sid/main amd64 python3-jsonschema all 4.26.0-1 [74.5 kB] Get:88 http://deb.debian.org/debian sid/main amd64 python3-platformdirs all 4.9.6-1 [17.3 kB] Get:89 http://deb.debian.org/debian sid/main amd64 python3-traitlets all 5.14.3+really5.14.3-4 [70.1 kB] Get:90 http://deb.debian.org/debian sid/main amd64 python3-jupyter-core all 5.9.1-1 [36.5 kB] Get:91 http://deb.debian.org/debian sid/main amd64 python3-nbformat all 5.10.4-1 [44.0 kB] Get:92 http://deb.debian.org/debian sid/main amd64 python3-packaging all 26.0-1 [64.3 kB] Get:93 http://deb.debian.org/debian sid/main amd64 python3-plac all 1.4.5-2 [83.0 kB] Get:94 http://deb.debian.org/debian sid/main amd64 python3-psutil amd64 7.1.0-1 [224 kB] Get:95 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.3.2-2 [165 kB] Get:96 http://deb.debian.org/debian sid/main amd64 python3-pulp all 2.7.0+dfsg-4 [72.4 kB] Get:97 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 2.6.3-2 [118 kB] Get:98 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.32.5+dfsg-1 [72.4 kB] Get:99 http://deb.debian.org/debian sid/main amd64 python3-retry all 0.9.2-5 [7256 B] Get:100 http://deb.debian.org/debian sid/main amd64 python3-wrapt amd64 2.1.1-2 [70.9 kB] Get:101 http://deb.debian.org/debian sid/main amd64 python3-smart-open all 7.5.1-2 [67.8 kB] Get:102 http://deb.debian.org/debian sid/main amd64 python3-stopit all 1.1.2-4 [13.0 kB] Get:103 http://deb.debian.org/debian sid/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] Get:104 http://deb.debian.org/debian sid/main amd64 python3-throttler all 1.2.3-1 [8600 B] Get:105 http://deb.debian.org/debian sid/main amd64 python3-toposort all 1.10-2 [7336 B] Get:106 http://deb.debian.org/debian sid/main amd64 python3-yaml amd64 6.0.3-1 [186 kB] Get:107 http://deb.debian.org/debian sid/main amd64 python3-yte all 1.5.4-1 [13.6 kB] Get:108 http://deb.debian.org/debian sid/main amd64 snakemake all 7.32.4-11 [314 kB] Preconfiguring packages ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../07-libsqlite3-0_3.46.1-9+b1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-9+b1) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../08-libpython3.13-stdlib_3.13.12-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.12-1) ... 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Unpacking python3-jsonschema-specifications (2023.12.1-5) ... Selecting previously unselected package python3-jsonschema. Preparing to unpack .../72-python3-jsonschema_4.26.0-1_all.deb ... Unpacking python3-jsonschema (4.26.0-1) ... Selecting previously unselected package python3-platformdirs. Preparing to unpack .../73-python3-platformdirs_4.9.6-1_all.deb ... Unpacking python3-platformdirs (4.9.6-1) ... Selecting previously unselected package python3-traitlets. Preparing to unpack .../74-python3-traitlets_5.14.3+really5.14.3-4_all.deb ... Unpacking python3-traitlets (5.14.3+really5.14.3-4) ... Selecting previously unselected package python3-jupyter-core. Preparing to unpack .../75-python3-jupyter-core_5.9.1-1_all.deb ... Unpacking python3-jupyter-core (5.9.1-1) ... Selecting previously unselected package python3-nbformat. Preparing to unpack .../76-python3-nbformat_5.10.4-1_all.deb ... Unpacking python3-nbformat (5.10.4-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../77-python3-packaging_26.0-1_all.deb ... Unpacking python3-packaging (26.0-1) ... Selecting previously unselected package python3-plac. Preparing to unpack .../78-python3-plac_1.4.5-2_all.deb ... Unpacking python3-plac (1.4.5-2) ... Selecting previously unselected package python3-psutil. Preparing to unpack .../79-python3-psutil_7.1.0-1_amd64.deb ... Unpacking python3-psutil (7.1.0-1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../80-python3-pyparsing_3.3.2-2_all.deb ... Unpacking python3-pyparsing (3.3.2-2) ... Selecting previously unselected package python3-pulp. Preparing to unpack .../81-python3-pulp_2.7.0+dfsg-4_all.deb ... Unpacking python3-pulp (2.7.0+dfsg-4) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../82-python3-urllib3_2.6.3-2_all.deb ... Unpacking python3-urllib3 (2.6.3-2) ... Selecting previously unselected package python3-requests. Preparing to unpack .../83-python3-requests_2.32.5+dfsg-1_all.deb ... Unpacking python3-requests (2.32.5+dfsg-1) ... Selecting previously unselected package python3-retry. Preparing to unpack .../84-python3-retry_0.9.2-5_all.deb ... Unpacking python3-retry (0.9.2-5) ... Selecting previously unselected package python3-wrapt. Preparing to unpack .../85-python3-wrapt_2.1.1-2_amd64.deb ... Unpacking python3-wrapt (2.1.1-2) ... Selecting previously unselected package python3-smart-open. Preparing to unpack .../86-python3-smart-open_7.5.1-2_all.deb ... Unpacking python3-smart-open (7.5.1-2) ... Selecting previously unselected package python3-stopit. Preparing to unpack .../87-python3-stopit_1.1.2-4_all.deb ... Unpacking python3-stopit (1.1.2-4) ... Selecting previously unselected package python3-tabulate. Preparing to unpack .../88-python3-tabulate_0.9.0-1_all.deb ... Unpacking python3-tabulate (0.9.0-1) ... Selecting previously unselected package python3-throttler. Preparing to unpack .../89-python3-throttler_1.2.3-1_all.deb ... Unpacking python3-throttler (1.2.3-1) ... Selecting previously unselected package python3-toposort. Preparing to unpack .../90-python3-toposort_1.10-2_all.deb ... Unpacking python3-toposort (1.10-2) ... Selecting previously unselected package python3-yaml. Preparing to unpack .../91-python3-yaml_6.0.3-1_amd64.deb ... Unpacking python3-yaml (6.0.3-1) ... Selecting previously unselected package python3-yte. Preparing to unpack .../92-python3-yte_1.5.4-1_all.deb ... Unpacking python3-yte (1.5.4-1) ... Selecting previously unselected package snakemake. Preparing to unpack .../93-snakemake_7.32.4-11_all.deb ... Unpacking snakemake (7.32.4-11) ... Setting up media-types (14.0.0) ... Setting up libkeyutils1:amd64 (1.6.3-6+b2) ... Setting up libgdbm6t64:amd64 (1.26-1+b2) ... Setting up libdatrie1:amd64 (0.2.14-1+b1) ... Setting up libgdbm-compat4t64:amd64 (1.26-1+b2) ... Setting up libyaml-0-2:amd64 (0.2.5-2+b1) ... Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-7) ... Setting up libbrotli1:amd64 (1.2.0-3) ... Setting up libsqlite3-0:amd64 (3.46.1-9+b1) ... Setting up libnghttp2-14:amd64 (1.69.0-1) ... Setting up libcom-err2:amd64 (1.47.4-1) ... Setting up libkrb5support0:amd64 (1.22.1-2+b1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-11) ... Setting up libblas3:amd64 (3.12.1-7+b2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libunistring5:amd64 (1.4.2-1) ... Setting up libncursesw6:amd64 (6.6+20251231-1) ... Setting up libk5crypto3:amd64 (1.22.1-2+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-11) ... Setting up libgfortran5:amd64 (16-20260425-1) ... Setting up libnghttp3-9:amd64 (1.15.0-1) ... Setting up libffi8:amd64 (3.5.2-4) ... Setting up perl-modules-5.40 (5.40.1-7) ... Setting up libtasn1-6:amd64 (4.21.0-2+b1) ... Setting up git-man (1:2.53.0-1) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:amd64 (1.22.1-1) ... Setting up sgml-base (1.31+nmu1) ... Setting up libkrb5-3:amd64 (1.22.1-2+b1) ... Setting up libssh2-1t64:amd64 (1.11.1-2) ... Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Setting up openssl (3.6.2-1) ... Setting up readline-common (8.3-4) ... Setting up libldap2:amd64 (2.6.10+dfsg-1+b1) ... Setting up libjs-bootstrap (3.4.1+dfsg-7) ... Setting up liblapack3:amd64 (3.12.1-7+b2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libidn2-0:amd64 (2.3.8-4+b2) ... Setting up coinor-libcoinutils3v5:amd64 (2.11.12+ds-1+b2) ... Setting up libperl5.40:amd64 (5.40.1-7+b1) ... Setting up ca-certificates (20260223) ... Updating certificates in /etc/ssl/certs... 144 added, 0 removed; done. Setting up perl (5.40.1-7+b1) ... Setting up libp11-kit0:amd64 (0.26.2-2) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-2+b1) ... Setting up coinor-libosi1v5:amd64 (0.108.11+ds-1+b2) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up xml-core (0.19) ... Setting up libpython3.13-stdlib:amd64 (3.13.12-1) ... Setting up libpython3-stdlib:amd64 (3.13.9-3) ... Setting up libgnutls30t64:amd64 (3.8.12-3) ... Setting up python3.13 (3.13.12-1) ... Setting up libpsl5t64:amd64 (0.21.5-1) ... Setting up python3 (3.13.9-3) ... Setting up python3-markupsafe (3.0.3-1+b1) ... Setting up python3-plac (1.4.5-2) ... Setting up python3-platformdirs (4.9.6-1) ... Setting up python3-psutil (7.1.0-1) ... Setting up liberror-perl (0.17030-1) ... Setting up python3-decorator (5.2.1-2) ... Setting up python3-jinja2 (3.1.6-2) ... Setting up python3-packaging (26.0-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-pyparsing (3.3.2-2) ... Setting up python3-humanfriendly (10.0-6) ... Setting up python3-certifi (2026.4.22+ds-1) ... Setting up coinor-libclp1:amd64 (1.17.10+ds-1+b2) ... Setting up python3-dpath (2.2.0-2) ... Setting up python3-connection-pool (0.0.3-2) ... Setting up python3-idna (3.11-1) ... Setting up python3-wrapt (2.1.1-2) ... Setting up python3-throttler (1.2.3-1) ... Setting up python3-retry (0.9.2-5) ... Setting up python3-urllib3 (2.6.3-2) ... Setting up python3-rpds-py (0.30.0-1) ... Setting up python3-fastjsonschema (2.21.1-1) ... Setting up python3-stopit (1.1.2-4) ... Setting up python3-traitlets (5.14.3+really5.14.3-4) ... Setting up python3-roman-numerals (4.1.0-1) ... Setting up coinor-libcgl1:amd64 (0.60.9+ds-1+b2) ... Setting up python3-datrie (0.8.3-2+b1) ... Setting up python3-smmap (6.0.0-1) ... Setting up python3-jupyter-core (5.9.1-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.22.1-1) ... Setting up python3-toposort (1.10-2) ... Setting up python3-configargparse (1.7-2) ... Setting up python3-attr (26.1.0-1) ... Setting up python3-smart-open (7.5.1-2) ... Setting up python3-charset-normalizer (3.4.4-2) ... Setting up libcurl3t64-gnutls:amd64 (8.20.0~rc3-1) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-yaml (6.0.3-1) ... Setting up python3-gitdb (4.0.12-1) ... Setting up python3-yte (1.5.4-1) ... Setting up python3-requests (2.32.5+dfsg-1) ... Setting up coinor-libcbc3.1:amd64 (2.10.13+ds-1) ... Setting up git (1:2.53.0-1) ... Setting up python3-referencing (0.36.2-3) ... Setting up coinor-cbc (2.10.13+ds-1) ... Setting up python3-git (3.1.46-1) ... Setting up python3-jsonschema-specifications (2023.12.1-5) ... Setting up python3-pulp (2.7.0+dfsg-4) ... /usr/lib/python3/dist-packages/pulp/apis/xpress_api.py:325: SyntaxWarning: invalid escape sequence '\ ' otherwise be interpreted by the Tcl shell: \ $ " [ Setting up python3-jsonschema (4.26.0-1) ... Setting up python3-nbformat (5.10.4-1) ... Processing triggers for libc-bin (2.42-15) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up docutils-common (0.22.4+dfsg-1) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up python3-docutils (0.22.4+dfsg-1) ... Setting up snakemake (7.32.4-11) ... Processing triggers for ca-certificates (20260223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m33.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'apt-get', '-y', 'install', 'snakemake=7.32.4-11'] 0m33.7s INFO: Running scripts post_install 0m33.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/post_install_exceptions'] 0m33.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/post_install_exceptions'] 0m33.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/post_install_log_alternatives'] 0m33.7s DUMP: Removing 'local diversion of /usr/bin/update-alternatives to /usr/bin/update-alternatives.orig' LOG-ALTERNATIVES: dpkg=python3: piuparts=snakemake=7.32.4-11: /usr/bin/update-alternatives --auto /usr/bin/python3 LOG-ALTERNATIVES: dpkg=libblas3: piuparts=snakemake=7.32.4-11: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so.3 libblas.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 10 LOG-ALTERNATIVES: dpkg=liblapack3: piuparts=snakemake=7.32.4-11: /usr/bin/update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so.3 liblapack.so.3-x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 10 LOG-ALTERNATIVES: dpkg=perl: piuparts=snakemake=7.32.4-11: /usr/bin/update-alternatives --remove rename /usr/bin/prename 0m33.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/post_install_log_alternatives'] 0m33.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'systemd-tmpfiles', '--cat-config'] 0m33.7s DUMP: chroot: failed to run command 'systemd-tmpfiles': No such file or directory 0m33.7s DEBUG: Command failed (status=127), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'systemd-tmpfiles', '--cat-config'] 0m33.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6'] 0m34.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6'] 0m35.5s DEBUG: No broken symlinks as far as we can find. 0m36.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', '-ac', '--ignore-obsolete'] 0m37.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', '-ac', '--ignore-obsolete'] 0m37.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m37.6s DUMP: 0.15.9~deb12u1 0m37.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m37.6s INFO: Running adequate version 0.15.9~deb12u1 now. 0m37.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'snakemake'] 0m37.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'snakemake'] 0m37.7s INFO: Running scripts pre_remove 0m37.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m37.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m37.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m37.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m37.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m39.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m39.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m39.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m39.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_remove_exceptions'] 0m39.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/pre_remove_exceptions'] 0m39.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m39.7s DUMP: install ok installed apt apt 3.2.0 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-2 install ok installed bsdutils bsdutils 1:2.42-5 install ok installed ca-certificates ca-certificates 20260223 install ok installed coinor-cbc coinor-cbc 2.10.13+ds-1 install ok installed coinor-libcbc3.1:amd64 coinor-libcbc3.1 2.10.13+ds-1 install ok installed coinor-libcgl1:amd64 coinor-libcgl1 0.60.9+ds-1+b2 install ok installed coinor-libclp1:amd64 coinor-libclp1 1.17.10+ds-1+b2 install ok installed coinor-libcoinutils3v5:amd64 coinor-libcoinutils3v5 2.11.12+ds-1+b2 install ok installed coinor-libosi1v5:amd64 coinor-libosi1v5 0.108.11+ds-1+b2 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed docutils-common docutils-common 0.22.4+dfsg-1 install ok installed dpkg dpkg 1.23.7 install ok installed findutils findutils 4.10.0-3 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-7 install ok installed gcc-16-base:amd64 gcc-16-base 16-20260425-1 install ok installed git git 1:2.53.0-1 install ok installed git-man git-man 1:2.53.0-1 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.3.2-3 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.2.0 install ok installed libattr1:amd64 libattr1 1:2.5.2-4 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libblas3:amd64 libblas3 3.12.1-7+b2 install ok installed libblkid1:amd64 libblkid1 2.42-5 install ok installed libbrotli1:amd64 libbrotli1 1.2.0-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-2+b2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.42-15 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.42-15 install ok installed libc6:amd64 libc6 2.42-15 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.3-1 install ok installed libcom-err2:amd64 libcom-err2 1.47.4-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.1-1+b1 install ok installed libcurl3t64-gnutls:amd64 libcurl3t64-gnutls 8.20.0~rc3-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.14-1+b1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.282+b3 install ok installed liberror-perl liberror-perl 0.17030-1 install ok installed libexpat1:amd64 libexpat1 2.8.0-1 install ok installed libffi8:amd64 libffi8 3.5.2-4 install ok installed libgcc-s1:amd64 libgcc-s1 16-20260425-1 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1+b2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1+b2 install ok installed libgfortran5:amd64 libgfortran5 16-20260425-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.12-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.22.1-2+b1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-4+b2 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-7 install ok installed libjs-jquery libjs-jquery 3.7.1+dfsg+~3.5.33-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.22.1-2+b1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6+b2 install ok installed libkrb5-3:amd64 libkrb5-3 1.22.1-2+b1 install ok installed libkrb5support0:amd64 libkrb5support0 1.22.1-2+b1 install ok installed liblapack3:amd64 liblapack3 3.12.1-7+b2 install ok installed libldap2:amd64 libldap2 2.6.10+dfsg-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.3-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b2 install ok installed libmount1:amd64 libmount1 2.42-5 install ok installed libncursesw6:amd64 libncursesw6 6.6+20251231-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.69.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.15.0-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.22.1-1 install ok installed libngtcp2-crypto-gnutls8:amd64 libngtcp2-crypto-gnutls8 1.22.1-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.26.2-2 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5+b1 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1+b1 install ok installed libperl5.40:amd64 libperl5.40 5.40.1-7+b1 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.5-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.9-3 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.12-1 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.12-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-11 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-11 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2+b1 install ok installed libselinux1:amd64 libselinux1 3.10-1 install ok installed libsemanage-common libsemanage-common 3.10-1 install ok installed libsemanage2:amd64 libsemanage2 3.10-1 install ok installed libsepol2:amd64 libsepol2 3.10-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42-5 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-9+b1 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-2 install ok installed libssl3t64:amd64 libssl3t64 3.6.2-1 install ok installed libstdc++6:amd64 libstdc++6 16-20260425-1 install ok installed libsystemd0:amd64 libsystemd0 260.1-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.21.0-2+b1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20251231-1 install ok installed libudev1:amd64 libudev1 260.1-1 install ok installed libunistring5:amd64 libunistring5 1.4.2-1 install ok installed libuuid1:amd64 libuuid1 2.42-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-3+b2 install ok installed login login 1:4.16.0-2+really2.42-5 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed media-types media-types 14.0.0 install ok installed mount mount 2.42-5 install ok installed ncurses-base ncurses-base 6.6+20251231-1 install ok installed ncurses-bin ncurses-bin 6.6+20251231-1 install ok installed netbase netbase 6.5 install ok installed openssl openssl 3.6.2-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.2-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed perl perl 5.40.1-7+b1 install ok installed perl-base perl-base 5.40.1-7+b1 install ok installed perl-modules-5.40 perl-modules-5.40 5.40.1-7 install ok installed python3 python3 3.13.9-3 install ok installed python3-attr python3-attr 26.1.0-1 install ok installed python3-certifi python3-certifi 2026.4.22+ds-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-2 install ok installed python3-charset-normalizer python3-charset-normalizer 3.4.4-2 install ok installed python3-configargparse python3-configargparse 1.7-2 install ok installed python3-connection-pool python3-connection-pool 0.0.3-2 install ok installed python3-datrie python3-datrie 0.8.3-2+b1 install ok installed python3-decorator python3-decorator 5.2.1-2 install ok installed python3-docutils python3-docutils 0.22.4+dfsg-1 install ok installed python3-dpath python3-dpath 2.2.0-2 install ok installed python3-fastjsonschema python3-fastjsonschema 2.21.1-1 install ok installed python3-git python3-git 3.1.46-1 install ok installed python3-gitdb python3-gitdb 4.0.12-1 install ok installed python3-humanfriendly python3-humanfriendly 10.0-6 install ok installed python3-idna python3-idna 3.11-1 install ok installed python3-jinja2 python3-jinja2 3.1.6-2 install ok installed python3-jsonschema python3-jsonschema 4.26.0-1 install ok installed python3-jsonschema-specifications python3-jsonschema-specifications 2023.12.1-5 install ok installed python3-jupyter-core python3-jupyter-core 5.9.1-1 install ok installed python3-markupsafe python3-markupsafe 3.0.3-1+b1 install ok installed python3-minimal python3-minimal 3.13.9-3 install ok installed python3-nbformat python3-nbformat 5.10.4-1 install ok installed python3-packaging python3-packaging 26.0-1 install ok installed python3-plac python3-plac 1.4.5-2 install ok installed python3-platformdirs python3-platformdirs 4.9.6-1 install ok installed python3-psutil python3-psutil 7.1.0-1 install ok installed python3-pulp python3-pulp 2.7.0+dfsg-4 install ok installed python3-pyparsing python3-pyparsing 3.3.2-2 install ok installed python3-referencing python3-referencing 0.36.2-3 install ok installed python3-requests python3-requests 2.32.5+dfsg-1 install ok installed python3-retry python3-retry 0.9.2-5 install ok installed python3-roman-numerals python3-roman-numerals 4.1.0-1 install ok installed python3-rpds-py python3-rpds-py 0.30.0-1 install ok installed python3-smart-open python3-smart-open 7.5.1-2 install ok installed python3-smmap python3-smmap 6.0.0-1 install ok installed python3-stopit python3-stopit 1.1.2-4 install ok installed python3-tabulate python3-tabulate 0.9.0-1 install ok installed python3-throttler python3-throttler 1.2.3-1 install ok installed python3-toposort python3-toposort 1.10-2 install ok installed python3-traitlets python3-traitlets 5.14.3+really5.14.3-4 install ok installed python3-urllib3 python3-urllib3 2.6.3-2 install ok installed python3-wrapt python3-wrapt 2.1.1-2 install ok installed python3-yaml python3-yaml 6.0.3-1 install ok installed python3-yte python3-yte 1.5.4-1 install ok installed python3.13 python3.13 3.13.12-1 install ok installed python3.13-minimal python3.13-minimal 3.13.12-1 install ok installed readline-common readline-common 8.3-4 install ok installed sed sed 4.9-3 install ok installed sgml-base sgml-base 1.31+nmu1 install ok installed snakemake snakemake 7.32.4-11 install ok installed sqv sqv 1.3.0-5+b1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-4 install ok installed tzdata tzdata 2026b-1 install ok installed util-linux util-linux 2.42-5 install ok installed xml-core xml-core 0.19 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m39.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m39.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3.1:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'docutils-common', 'fonts-glyphicons-halflings', 'git', 'git-man', 'libblas3:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl3t64-gnutls:amd64', 'libdatrie1:amd64', 'liberror-perl', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgnutls30t64:amd64', 'libgssapi-krb5-2:amd64', 'libidn2-0:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libp11-kit0:amd64', 'libperl5.40:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'openssl', 'perl', 'perl-modules-5.40', 'python3', 'python3-attr', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-configargparse', 'python3-connection-pool', 'python3-datrie', 'python3-decorator', 'python3-docutils', 'python3-dpath', 'python3-fastjsonschema', 'python3-git', 'python3-gitdb', 'python3-humanfriendly', 'python3-idna', 'python3-jinja2', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-jupyter-core', 'python3-markupsafe', 'python3-minimal', 'python3-nbformat', 'python3-packaging', 'python3-plac', 'python3-platformdirs', 'python3-psutil', 'python3-pulp', 'python3-pyparsing', 'python3-referencing', 'python3-requests', 'python3-retry', 'python3-roman-numerals', 'python3-rpds-py', 'python3-smart-open', 'python3-smmap', 'python3-stopit', 'python3-tabulate', 'python3-throttler', 'python3-toposort', 'python3-traitlets', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-yte', 'python3.13', 'python3.13-minimal', 'readline-common', 'sgml-base', 'xml-core', 'snakemake'] 0m46.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: ca-certificates coinor-cbc coinor-libcbc3.1 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common fonts-glyphicons-halflings git git-man libblas3 libbrotli1 libcom-err2 libcurl3t64-gnutls libdatrie1 liberror-perl libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgnutls30t64 libgssapi-krb5-2 libidn2-0 libjs-bootstrap libjs-jquery libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap2 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libp11-kit0 libperl5.40 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libtasn1-6 libunistring5 libyaml-0-2 media-types netbase openssl perl perl-modules-5.40 python3 python3-attr python3-certifi python3-chardet python3-charset-normalizer python3-configargparse python3-connection-pool python3-datrie python3-decorator python3-docutils python3-dpath python3-fastjsonschema python3-git python3-gitdb python3-humanfriendly python3-idna python3-jinja2 python3-jsonschema python3-jsonschema-specifications python3-jupyter-core python3-markupsafe python3-minimal python3-nbformat python3-packaging python3-plac python3-platformdirs python3-psutil python3-pulp python3-pyparsing python3-referencing python3-requests python3-retry python3-roman-numerals python3-rpds-py python3-smart-open python3-smmap python3-stopit python3-tabulate python3-throttler python3-toposort python3-traitlets python3-urllib3 python3-wrapt python3-yaml python3-yte python3.13 python3.13-minimal readline-common sgml-base snakemake xml-core 0 upgraded, 0 newly installed, 108 to remove and 0 not upgraded. After this operation, 193 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11916 files and directories currently installed.) Removing snakemake (7.32.4-11) ... Removing python3-requests (2.32.5+dfsg-1) ... Removing python3-pulp (2.7.0+dfsg-4) ... Removing coinor-cbc (2.10.13+ds-1) ... Removing coinor-libcbc3.1:amd64 (2.10.13+ds-1) ... Removing coinor-libcgl1:amd64 (0.60.9+ds-1+b2) ... Removing coinor-libclp1:amd64 (1.17.10+ds-1+b2) ... Removing coinor-libosi1v5:amd64 (0.108.11+ds-1+b2) ... Removing coinor-libcoinutils3v5:amd64 (2.11.12+ds-1+b2) ... Removing python3-docutils (0.22.4+dfsg-1) ... Removing docutils-common (0.22.4+dfsg-1) ... Removing libjs-bootstrap (3.4.1+dfsg-7) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-7) ... Removing python3-git (3.1.46-1) ... Removing git (1:2.53.0-1) ... Removing git-man (1:2.53.0-1) ... Removing liblapack3:amd64 (3.12.1-7+b2) ... Removing libblas3:amd64 (3.12.1-7+b2) ... Removing libcurl3t64-gnutls:amd64 (8.20.0~rc3-1) ... Removing libbrotli1:amd64 (1.2.0-3) ... Removing libgssapi-krb5-2:amd64 (1.22.1-2+b1) ... Removing libkrb5-3:amd64 (1.22.1-2+b1) ... Removing libcom-err2:amd64 (1.47.4-1) ... Removing python3-datrie (0.8.3-2+b1) ... Removing libdatrie1:amd64 (0.2.14-1+b1) ... Removing liberror-perl (0.17030-1) ... Removing python3-nbformat (5.10.4-1) ... Removing python3-jsonschema (4.26.0-1) ... Removing python3-jsonschema-specifications (2023.12.1-5) ... Removing python3-referencing (0.36.2-3) ... Removing python3-rpds-py (0.30.0-1) ... Removing python3-yte (1.5.4-1) ... Removing python3-humanfriendly (10.0-6) ... Removing python3-yaml (6.0.3-1) ... Removing python3-jupyter-core (5.9.1-1) ... Removing python3-traitlets (5.14.3+really5.14.3-4) ... Removing libngtcp2-crypto-gnutls8:amd64 (1.22.1-1) ... Removing libgnutls30t64:amd64 (3.8.12-3) ... Removing libp11-kit0:amd64 (0.26.2-2) ... Removing perl (5.40.1-7+b1) ... Removing libperl5.40:amd64 (5.40.1-7+b1) ... Removing libgdbm-compat4t64:amd64 (1.26-1+b2) ... Removing libgdbm6t64:amd64 (1.26-1+b2) ... Removing libgfortran5:amd64 (16-20260425-1) ... Removing libpsl5t64:amd64 (0.21.5-1) ... Removing libidn2-0:amd64 (2.3.8-4+b2) ... Removing libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Removing libk5crypto3:amd64 (1.22.1-2+b1) ... Removing libkeyutils1:amd64 (1.6.3-6+b2) ... Removing libkrb5support0:amd64 (1.22.1-2+b1) ... Removing libldap2:amd64 (2.6.10+dfsg-1+b1) ... Removing libnghttp2-14:amd64 (1.69.0-1) ... Removing libnghttp3-9:amd64 (1.15.0-1) ... Removing libngtcp2-16:amd64 (1.22.1-1) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-11) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-11) ... Removing libssh2-1t64:amd64 (1.11.1-2) ... Removing libtasn1-6:amd64 (4.21.0-2+b1) ... Removing libunistring5:amd64 (1.4.2-1) ... Removing libyaml-0-2:amd64 (0.2.5-2+b1) ... Removing perl-modules-5.40 (5.40.1-7) ... Removing python3-attr (26.1.0-1) ... Removing python3-certifi (2026.4.22+ds-1) ... Removing python3-chardet (5.2.0+dfsg-2) ... Removing python3-charset-normalizer (3.4.4-2) ... Removing python3-configargparse (1.7-2) ... Removing python3-connection-pool (0.0.3-2) ... Removing python3-retry (0.9.2-5) ... Removing python3-decorator (5.2.1-2) ... Removing python3-dpath (2.2.0-2) ... Removing python3-fastjsonschema (2.21.1-1) ... Removing python3-gitdb (4.0.12-1) ... Removing python3-idna (3.11-1) ... Removing python3-jinja2 (3.1.6-2) ... Removing python3-markupsafe (3.0.3-1+b1) ... Removing python3-packaging (26.0-1) ... Removing python3-plac (1.4.5-2) ... Removing python3-platformdirs (4.9.6-1) ... Removing python3-psutil (7.1.0-1) ... Removing python3-pyparsing (3.3.2-2) ... Removing python3-roman-numerals (4.1.0-1) ... Removing python3-smart-open (7.5.1-2) ... Removing python3-smmap (6.0.0-1) ... Removing python3-stopit (1.1.2-4) ... Removing python3-tabulate (0.9.0-1) ... Removing python3-throttler (1.2.3-1) ... Removing python3-toposort (1.10-2) ... Removing python3-urllib3 (2.6.3-2) ... Removing python3-wrapt (2.1.1-2) ... Removing xml-core (0.19) ... Removing sgml-base (1.31+nmu1) ... Removing ca-certificates (20260223) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing python3 (3.13.9-3) ... Removing python3.13 (3.13.12-1) ... Removing python3-minimal (3.13.9-3) ... Removing python3.13-minimal (3.13.12-1) ... Removing libexpat1:amd64 (2.8.0-1) ... Removing libpython3-stdlib:amd64 (3.13.9-3) ... Removing libpython3.13-stdlib:amd64 (3.13.12-1) ... find: '/usr/lib/python3': No such file or directory Removing libffi8:amd64 (3.5.2-4) ... Removing libncursesw6:amd64 (6.6+20251231-1) ... Removing libpython3.13-minimal:amd64 (3.13.12-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.46.1-9+b1) ... Removing media-types (14.0.0) ... Removing netbase (6.5) ... Removing openssl (3.6.2-1) ... Removing readline-common (8.3-4) ... Processing triggers for libc-bin (2.42-15) ... 0m46.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'apt-get', 'remove', '--allow-remove-essential', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3.1:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'docutils-common', 'fonts-glyphicons-halflings', 'git', 'git-man', 'libblas3:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl3t64-gnutls:amd64', 'libdatrie1:amd64', 'liberror-perl', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgnutls30t64:amd64', 'libgssapi-krb5-2:amd64', 'libidn2-0:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libp11-kit0:amd64', 'libperl5.40:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'openssl', 'perl', 'perl-modules-5.40', 'python3', 'python3-attr', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-configargparse', 'python3-connection-pool', 'python3-datrie', 'python3-decorator', 'python3-docutils', 'python3-dpath', 'python3-fastjsonschema', 'python3-git', 'python3-gitdb', 'python3-humanfriendly', 'python3-idna', 'python3-jinja2', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-jupyter-core', 'python3-markupsafe', 'python3-minimal', 'python3-nbformat', 'python3-packaging', 'python3-plac', 'python3-platformdirs', 'python3-psutil', 'python3-pulp', 'python3-pyparsing', 'python3-referencing', 'python3-requests', 'python3-retry', 'python3-roman-numerals', 'python3-rpds-py', 'python3-smart-open', 'python3-smmap', 'python3-stopit', 'python3-tabulate', 'python3-throttler', 'python3-toposort', 'python3-traitlets', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-yte', 'python3.13', 'python3.13-minimal', 'readline-common', 'sgml-base', 'xml-core', 'snakemake'] 0m46.5s INFO: Running scripts post_remove 0m46.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/post_remove_exceptions'] 0m46.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/post_remove_exceptions'] 0m46.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'dpkg', '--purge', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3.1:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'docutils-common', 'fonts-glyphicons-halflings', 'git', 'git-man', 'libblas3:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl3t64-gnutls:amd64', 'libdatrie1:amd64', 'liberror-perl', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgnutls30t64:amd64', 'libgssapi-krb5-2:amd64', 'libidn2-0:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libp11-kit0:amd64', 'libperl5.40:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'openssl', 'perl', 'perl-modules-5.40', 'python3', 'python3-attr', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-configargparse', 'python3-connection-pool', 'python3-datrie', 'python3-decorator', 'python3-docutils', 'python3-dpath', 'python3-fastjsonschema', 'python3-git', 'python3-gitdb', 'python3-humanfriendly', 'python3-idna', 'python3-jinja2', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-jupyter-core', 'python3-markupsafe', 'python3-minimal', 'python3-nbformat', 'python3-packaging', 'python3-plac', 'python3-platformdirs', 'python3-psutil', 'python3-pulp', 'python3-pyparsing', 'python3-referencing', 'python3-requests', 'python3-retry', 'python3-roman-numerals', 'python3-rpds-py', 'python3-smart-open', 'python3-smmap', 'python3-stopit', 'python3-tabulate', 'python3-throttler', 'python3-toposort', 'python3-traitlets', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-yte', 'python3.13', 'python3.13-minimal', 'readline-common', 'sgml-base', 'xml-core'] 0m46.8s DUMP: (Reading database ... 4926 files and directories currently installed.) Purging configuration files for ca-certificates (20260223) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove coinor-cbc which is not installed dpkg: warning: ignoring request to remove coinor-libcbc3.1 which is not installed dpkg: warning: ignoring request to remove coinor-libcgl1 which is not installed dpkg: warning: ignoring request to remove coinor-libclp1 which is not installed dpkg: warning: ignoring request to remove coinor-libcoinutils3v5 which is not installed dpkg: warning: ignoring request to remove coinor-libosi1v5 which is not installed Purging configuration files for docutils-common (0.22.4+dfsg-1) ... dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which is not installed Purging configuration files for git (1:2.53.0-1) ... dpkg: warning: ignoring request to remove git-man which is not installed dpkg: warning: ignoring request to remove libblas3 which is not installed dpkg: warning: ignoring request to remove libbrotli1 which is not installed dpkg: warning: ignoring request to remove libcom-err2 which is not installed dpkg: warning: ignoring request to remove libcurl3t64-gnutls which is not installed dpkg: warning: ignoring request to remove libdatrie1 which is not installed dpkg: warning: ignoring request to remove liberror-perl which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which is not installed dpkg: warning: ignoring request to remove libgdbm6t64 which is not installed dpkg: warning: ignoring request to remove libgfortran5 which is not installed dpkg: warning: ignoring request to remove libgnutls30t64 which is not installed Purging configuration files for libgssapi-krb5-2:amd64 (1.22.1-2+b1) ... dpkg: warning: ignoring request to remove libidn2-0 which is not installed dpkg: warning: ignoring request to remove libjs-bootstrap which is not installed Purging configuration files for libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... dpkg: warning: ignoring request to remove libk5crypto3 which is not installed dpkg: warning: ignoring request to remove libkeyutils1 which is not installed dpkg: warning: ignoring request to remove libkrb5-3 which is not installed dpkg: warning: ignoring request to remove libkrb5support0 which is not installed dpkg: warning: ignoring request to remove liblapack3 which is not installed dpkg: warning: ignoring request to remove libldap2 which is not installed dpkg: warning: ignoring request to remove libncursesw6 which is not installed dpkg: warning: ignoring request to remove libnghttp2-14 which is not installed dpkg: warning: ignoring request to remove libnghttp3-9 which is not installed dpkg: warning: ignoring request to remove libngtcp2-16 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-gnutls8 which is not installed dpkg: warning: ignoring request to remove libp11-kit0 which is not installed dpkg: warning: ignoring request to remove libperl5.40 which is not installed dpkg: warning: ignoring request to remove libpsl5t64 which is not installed dpkg: warning: ignoring request to remove libpython3-stdlib which is not installed Purging configuration files for libpython3.13-minimal:amd64 (3.13.12-1) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove libsasl2-2 which is not installed dpkg: warning: ignoring request to remove libsasl2-modules-db which is not installed dpkg: warning: ignoring request to remove libsqlite3-0 which is not installed dpkg: warning: ignoring request to remove libssh2-1t64 which is not installed dpkg: warning: ignoring request to remove libtasn1-6 which is not installed dpkg: warning: ignoring request to remove libunistring5 which is not installed dpkg: warning: ignoring request to remove libyaml-0-2 which is not installed Purging configuration files for media-types (14.0.0) ... Purging configuration files for netbase (6.5) ... Purging configuration files for openssl (3.6.2-1) ... Purging configuration files for perl (5.40.1-7+b1) ... dpkg: warning: ignoring request to remove perl-modules-5.40 which is not installed Purging configuration files for python3 (3.13.9-3) ... dpkg: warning: ignoring request to remove python3-attr which is not installed dpkg: warning: ignoring request to remove python3-certifi which is not installed dpkg: warning: ignoring request to remove python3-chardet which is not installed dpkg: warning: ignoring request to remove python3-charset-normalizer which is not installed dpkg: warning: ignoring request to remove python3-configargparse which is not installed dpkg: warning: ignoring request to remove python3-connection-pool which is not installed dpkg: warning: ignoring request to remove python3-datrie which is not installed dpkg: warning: ignoring request to remove python3-decorator which is not installed dpkg: warning: ignoring request to remove python3-docutils which is not installed dpkg: warning: ignoring request to remove python3-dpath which is not installed dpkg: warning: ignoring request to remove python3-fastjsonschema which is not installed dpkg: warning: ignoring request to remove python3-git which is not installed dpkg: warning: ignoring request to remove python3-gitdb which is not installed dpkg: warning: ignoring request to remove python3-humanfriendly which is not installed dpkg: warning: ignoring request to remove python3-idna which is not installed dpkg: warning: ignoring request to remove python3-jinja2 which is not installed Purging configuration files for python3-jsonschema (4.26.0-1) ... dpkg: warning: ignoring request to remove python3-jsonschema-specifications which is not installed dpkg: warning: ignoring request to remove python3-jupyter-core which is not installed dpkg: warning: ignoring request to remove python3-markupsafe which is not installed dpkg: warning: ignoring request to remove python3-minimal which is not installed dpkg: warning: ignoring request to remove python3-nbformat which is not installed dpkg: warning: ignoring request to remove python3-packaging which is not installed dpkg: warning: ignoring request to remove python3-plac which is not installed dpkg: warning: ignoring request to remove python3-platformdirs which is not installed dpkg: warning: ignoring request to remove python3-psutil which is not installed dpkg: warning: ignoring request to remove python3-pulp which is not installed dpkg: warning: ignoring request to remove python3-pyparsing which is not installed dpkg: warning: ignoring request to remove python3-referencing which is not installed dpkg: warning: ignoring request to remove python3-requests which is not installed dpkg: warning: ignoring request to remove python3-retry which is not installed dpkg: warning: ignoring request to remove python3-roman-numerals which is not installed dpkg: warning: ignoring request to remove python3-rpds-py which is not installed dpkg: warning: ignoring request to remove python3-smart-open which is not installed dpkg: warning: ignoring request to remove python3-smmap which is not installed dpkg: warning: ignoring request to remove python3-stopit which is not installed dpkg: warning: ignoring request to remove python3-tabulate which is not installed dpkg: warning: ignoring request to remove python3-throttler which is not installed dpkg: warning: ignoring request to remove python3-toposort which is not installed dpkg: warning: ignoring request to remove python3-traitlets which is not installed dpkg: warning: ignoring request to remove python3-urllib3 which is not installed dpkg: warning: ignoring request to remove python3-wrapt which is not installed dpkg: warning: ignoring request to remove python3-yaml which is not installed dpkg: warning: ignoring request to remove python3-yte which is not installed dpkg: warning: ignoring request to remove python3.13 which is not installed Purging configuration files for python3.13-minimal (3.13.12-1) ... Purging configuration files for readline-common (8.3-4) ... Purging configuration files for sgml-base (1.31+nmu1) ... Purging configuration files for xml-core (0.19) ... 0m46.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'dpkg', '--purge', 'ca-certificates', 'coinor-cbc', 'coinor-libcbc3.1:amd64', 'coinor-libcgl1:amd64', 'coinor-libclp1:amd64', 'coinor-libcoinutils3v5:amd64', 'coinor-libosi1v5:amd64', 'docutils-common', 'fonts-glyphicons-halflings', 'git', 'git-man', 'libblas3:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libcurl3t64-gnutls:amd64', 'libdatrie1:amd64', 'liberror-perl', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgnutls30t64:amd64', 'libgssapi-krb5-2:amd64', 'libidn2-0:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'libldap2:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libp11-kit0:amd64', 'libperl5.40:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libtasn1-6:amd64', 'libunistring5:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'openssl', 'perl', 'perl-modules-5.40', 'python3', 'python3-attr', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-configargparse', 'python3-connection-pool', 'python3-datrie', 'python3-decorator', 'python3-docutils', 'python3-dpath', 'python3-fastjsonschema', 'python3-git', 'python3-gitdb', 'python3-humanfriendly', 'python3-idna', 'python3-jinja2', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-jupyter-core', 'python3-markupsafe', 'python3-minimal', 'python3-nbformat', 'python3-packaging', 'python3-plac', 'python3-platformdirs', 'python3-psutil', 'python3-pulp', 'python3-pyparsing', 'python3-referencing', 'python3-requests', 'python3-retry', 'python3-roman-numerals', 'python3-rpds-py', 'python3-smart-open', 'python3-smmap', 'python3-stopit', 'python3-tabulate', 'python3-throttler', 'python3-toposort', 'python3-traitlets', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-yte', 'python3.13', 'python3.13-minimal', 'readline-common', 'sgml-base', 'xml-core'] 0m46.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'dpkg', '--purge', 'snakemake'] 0m46.8s DUMP: dpkg: warning: ignoring request to remove snakemake which is not installed 0m46.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'dpkg', '--purge', 'snakemake'] 0m46.8s INFO: Running scripts post_purge 0m46.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/post_purge_exceptions'] 0m46.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/post_purge_exceptions'] 0m46.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'dpkg', '--purge', '--pending'] 0m46.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'dpkg', '--purge', '--pending'] 0m46.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'dpkg', '--remove', '--pending'] 0m46.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'dpkg', '--remove', '--pending'] 0m46.8s INFO: Running scripts post_test 0m46.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/post_test_exceptions'] 0m46.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'tmp/scripts/post_test_exceptions'] 0m46.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6'] 0m47.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6'] 0m47.5s DEBUG: No broken symlinks as far as we can find. 0m47.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'dpkg-divert', '--list'] 0m47.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'dpkg-divert', '--list'] 0m47.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'apt-get', 'clean'] 0m47.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6', 'apt-get', 'clean'] 0m47.5s DEBUG: Recording chroot state 0m48.2s INFO: PASS: Installation and purging test. 0m48.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6/dev/shm'] 0m48.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6/dev/shm'] 0m48.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6/dev/console'] 0m48.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6/dev/console'] 0m48.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6/dev/ptmx'] 0m48.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6/dev/ptmx'] 0m48.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6/dev/pts'] 0m48.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6/dev/pts'] 0m48.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6/proc'] 0m48.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6/proc'] 0m48.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6'] 0m48.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmph6k9m0b6'] 0m48.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmph6k9m0b6 0m48.8s INFO: PASS: All tests. 0m48.8s INFO: piuparts run ends. ret=0 End: 2026-04-27 15:58:19 GMT