Start: 2026-08-25 03:23:39 GMT [sid] Package: cp2k Version: 2025.2-3 Installed-Size: 61232 Maintainer: Debichem Team Architecture: amd64 Depends: cp2k-data (= 2025.2-3), libblas3 | libblas.so.3, libc6 (>= 2.38), libelpa19 (>= 2022.11.001), libfftw3-double3 (>= 3.3.10), libgcc-s1 (>= 4.0), libgfortran5 (>= 10), libgomp1 (>= 6), libint2-2t64, liblapack3 | liblapack.so.3, libopenmpi40 (>= 5.0.9), libscalapack-openmpi2.2 (>= 2.2.2), libsymspg2 (>= 2.6.0), libxc9 (>= 5.1.6) Description: Ab Initio Molecular Dynamics Homepage: http://www.cp2k.org Description-md5: 37c89754b1cfba92136be3fd32ced61d Section: science Priority: optional Filename: pool/main/c/cp2k/cp2k_2025.2-3_amd64.deb Size: 18998724 MD5sum: 43eda1408161755f118a61d0ed303229 SHA256: 22693f55dcc33a41c32836cfe1d751914b9b7d51d796fc60b183b92493440e2a [experimental] Package: cp2k Version: 2026.2-1 Installed-Size: 48429 Maintainer: Debichem Team Architecture: amd64 Depends: cp2k-data (= 2026.2-1), libblas3 | libblas.so.3, libc6 (>= 2.35), libelpa19 (>= 2022.11.001), libfftw3-double3 (>= 3.3.11), libgcc-s1 (>= 4.0), libgfortran5 (>= 10), libgomp1 (>= 11), libint2-2t64, liblapack3 | liblapack.so.3, libopenmpi40 (>= 5.0.10), libscalapack-openmpi2.2 (>= 2.2.3), libsymspg2 (>= 2.7.0), libxc15 (>= 7.0.0) Description: Ab Initio Molecular Dynamics Homepage: http://www.cp2k.org Description-md5: 37c89754b1cfba92136be3fd32ced61d Section: science Priority: optional Filename: pool/main/c/cp2k/cp2k_2026.2-1_amd64.deb Size: 15018964 MD5sum: 20d782fd642c84917316a9f80e9fb82f SHA256: eb013655e8e9b39788d1c4afd256bc63982de2a583df0962c0d3107a271ecab1 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid -d experimental -B /srv/piuparts.debian.org/slave/refchroot/sid2experimental/reference-chroot-metadata.dat --apt cp2k=2026.2-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211856~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid -d experimental -B /srv/piuparts.debian.org/slave/refchroot/sid2experimental/reference-chroot-metadata.dat --apt cp2k=2026.2-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 6.1.0-52-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.180-1 (2026-08-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpw4rrvx5y 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpw4rrvx5y 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpw4rrvx5y/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-get', 'update'] 0m4.1s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.7 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7727 kB] Fetched 18.7 MB in 3s (6677 kB/s) Reading package lists... 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-get', 'update'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-get', '-yf', 'dist-upgrade'] 0m5.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: libc-bin libc-gconv-modules-extra libc6 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3587 kB of archives. After this operation, 4096 B of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libc-gconv-modules-extra amd64 2.43-4 [1101 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.43-4 [1866 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.43-4 [620 kB] Preconfiguring packages ... Fetched 3587 kB in 0s (27.4 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../libc-gconv-modules-extra_2.43-4_amd64.deb ... Unpacking libc-gconv-modules-extra:amd64 (2.43-4) over (2.43-3) ... Setting up libc-gconv-modules-extra:amd64 (2.43-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../libc6_2.43-4_amd64.deb ... Unpacking libc6:amd64 (2.43-4) over (2.43-3) ... Setting up libc6:amd64 (2.43-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4976 files and directories currently installed.) Preparing to unpack .../libc-bin_2.43-4_amd64.deb ... Unpacking libc-bin (2.43-4) over (2.43-3) ... Setting up libc-bin (2.43-4) ... 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-get', '-yf', 'dist-upgrade'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.3s DUMP: 1a7ea4f8206da2b18e7cfcdebdd90866 - 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.3s INFO: Running scripts post_setup 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_setup_dummy_users'] 0m7.1s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_setup_dummy_users'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_setup_forbid_home'] 0m7.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_setup_forbid_home'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_setup_minimize'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_setup_minimize'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_setup_zz_backports'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_setup_zz_backports'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.2s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-3+b1 install ok installed bsdutils bsdutils 1:2.42.2-3 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.7 install ok installed findutils findutils 4.11.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-1 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69+nmu1 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libblkid1:amd64 libblkid1 2.42.2-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-4 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-4 install ok installed libc6:amd64 libc6 2.43-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.3-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.3-1 install ok installed libmd0:amd64 libmd0 1.2.0-2 install ok installed libmount1:amd64 libmount1 2.42.2-3 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1+b2 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1 install ok installed libselinux1:amd64 libselinux1 3.11-2 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.2-3 install ok installed libssl3t64:amd64 libssl3t64 3.6.3-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-1 install ok installed libsystemd0:amd64 libsystemd0 261.2-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libudev1:amd64 libudev1 261.2-1 install ok installed libuuid1:amd64 libuuid1 2.42.2-3 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.2-3 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed mount mount 2.42.2-3 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.3-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed perl-base perl-base 5.42.3-1 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.4.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-5 install ok installed tzdata tzdata 2026c-1 install ok installed util-linux util-linux 2.42.2-3 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.2s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/sid2experimental/reference-chroot-metadata.dat 0m7.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y'] 0m7.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y'] 0m7.6s INFO: Running scripts is_testable 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/is_testable_uninstallable'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/is_testable_uninstallable'] 0m7.6s INFO: Running scripts pre_test 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_test_exceptions'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_test_exceptions'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_test_root_password'] 0m7.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_test_root_password'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-cache', 'show', '--no-all-versions', 'cp2k'] 0m7.9s DUMP: Package: cp2k Version: 2025.2-3 Installed-Size: 61232 Maintainer: Debichem Team Architecture: amd64 Depends: cp2k-data (= 2025.2-3), libblas3 | libblas.so.3, libc6 (>= 2.38), libelpa19 (>= 2022.11.001), libfftw3-double3 (>= 3.3.10), libgcc-s1 (>= 4.0), libgfortran5 (>= 10), libgomp1 (>= 6), libint2-2t64, liblapack3 | liblapack.so.3, libopenmpi40 (>= 5.0.9), libscalapack-openmpi2.2 (>= 2.2.2), libsymspg2 (>= 2.6.0), libxc9 (>= 5.1.6) Description-en: Ab Initio Molecular Dynamics CP2K is a program to perform simulations of solid state, liquid, molecular and biological systems. It is especially aimed at massively parallel and linear scaling electronic structure methods and state-of-the-art ab-initio molecular dynamics (AIMD) simulations. . CP2K is optimized for the mixed Gaussian and Plane-Waves (GPW) method based on pseudopotentials, but is able to run all-electron or pure plane-wave/Gaussian calculations as well. Features include: . Ab-initio Electronic Structure Theory Methods using the QUICKSTEP module: . * Density-Functional Theory (DFT) energies and forces * Hartree-Fock (HF) energies and forces * Moeller-Plesset 2nd order perturbation theory (MP2) energies and forces * Random Phase Approximation (RPA) energies * Gas phase or Periodic boundary conditions (PBC) * Basis sets include various standard Gaussian-Type Orbitals (GTOs), Pseudo- potential plane-waves (PW), and a mixed Gaussian and (augmented) plane wave approach (GPW/GAPW) * Norm-conserving, seperable Goedecker-Teter-Hutter (GTH) and non-linear core corrected (NLCC) pseudopotentials, or all-electron calculations * Local Density Approximation (LDA) XC functionals including SVWN3, SVWN5, PW92 and PADE * Gradient-corrected (GGA) XC functionals including BLYP, BP86, PW91, PBE and HCTH120 as well as the meta-GGA XC functional TPSS * Hybrid XC functionals with exact Hartree-Fock Exchange (HFX) including B3LYP, PBE0 and MCY3 * Double-hybrid XC functionals including B2PLYP and B2GPPLYP * Additional XC functionals via LibXC * Dispersion corrections via DFT-D2 and DFT-D3 pair-potential models * Non-local van der Waals corrections for XC functionals including B88-vdW, PBE-vdW and B97X-D * DFT+U (Hubbard) correction * Density-Fitting for DFT via Bloechl or Density Derived Atomic Point Charges (DDAPC) charges, for HFX via Auxiliary Density Matrix Methods (ADMM) and for MP2/RPA via Resolution-of-identity (RI) * Sparse matrix and prescreening techniques for linear-scaling Kohn-Sham (KS) matrix computation * Orbital Transformation (OT) or Direct Inversion of the iterative subspace (DIIS) self-consistent field (SCF) minimizer * Local Resolution-of-Identity Projector Augmented Wave method (LRIGPW) * Absolutely Localized Molecular Orbitals SCF (ALMO-SCF) energies for linear scaling of molecular systems * Excited states via time-dependent density-functional perturbation theory (TDDFPT) . Ab-initio Molecular Dynamics: . * Born-Oppenheimer Molecular Dynamics (BOMD) * Ehrenfest Molecular Dynamics (EMD) * PS extrapolation of initial wavefunction * Time-reversible Always Stable Predictor-Corrector (ASPC) integrator * Approximate Car-Parrinello like Langevin Born-Oppenheimer Molecular Dynamics (Second-Generation Car-Parrinello Molecular Dynamics (SGCP)) . Mixed quantum-classical (QM/MM) simulations: . * Real-space multigrid approach for the evaluation of the Coulomb interactions between the QM and the MM part * Linear-scaling electrostatic coupling treating of periodic boundary conditions * Adaptive QM/MM . Further Features include: . * Single-point energies, geometry optimizations and frequency calculations * Several nudged-elastic band (NEB) algorithms (B-NEB, IT-NEB, CI-NEB, D-NEB) for minimum energy path (MEP) calculations * Global optimization of geometries * Solvation via the Self-Consistent Continuum Solvation (SCCS) model * Semi-Empirical calculations including the AM1, RM1, PM3, MNDO, MNDO-d, PNNL and PM6 parametrizations, density-functional tight-binding (DFTB) and self-consistent-polarization tight-binding (SCP-TB), with or without periodic boundary conditions * Classical Molecular Dynamics (MD) simulations in microcanonical ensemble (NVE) or canonical ensmble (NVT) with Nose-Hover and canonical sampling through velocity rescaling (CSVR) thermostats * Metadynamics including well-tempered Metadynamics for Free Energy calculations * Classical Force-Field (MM) simulations * Monte-Carlo (MC) KS-DFT simulations * Static (e.g. spectra) and dynamical (e.g. diffusion) properties * ATOM code for pseudopotential generation * Integrated molecular basis set optimization . CP2K does not implement conventional Car-Parrinello Molecular Dynamics (CPMD). Description-md5: 37c89754b1cfba92136be3fd32ced61d Homepage: http://www.cp2k.org Section: science Priority: optional Filename: pool/main/c/cp2k/cp2k_2025.2-3_amd64.deb Size: 18998724 MD5sum: 43eda1408161755f118a61d0ed303229 SHA256: 22693f55dcc33a41c32836cfe1d751914b9b7d51d796fc60b183b92493440e2a 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-cache', 'show', '--no-all-versions', 'cp2k'] 0m7.9s INFO: apt-cache knows about the following packages: cp2k 0m7.9s INFO: Running scripts pre_install 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_database-server'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_database-server'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_exceptions'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_exceptions'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_extras'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_extras'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-cache', 'policy'] 0m7.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-cache', 'policy'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-cache', 'policy', 'cp2k'] 0m8.0s DUMP: cp2k: Installed: (none) Candidate: 2025.2-3 Version table: 2025.2-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-cache', 'policy', 'cp2k'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-get', '-y', 'install', 'cp2k'] 0m24.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: cp2k-data ibverbs-providers libamd-comgr3 libamdhip64-6 libblas3 libcbor0.10 libclang-common-21-dev libdrm-amdgpu1 libdrm-common libdrm2 libedit2 libelf1t64 libelpa19 libesmtp6 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 libffi8 libfftw3-double3 libfido2-1 libfuse3-4 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgomp1 libhsa-runtime64-1 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs1 libint2-2t64 liblapack3 libllvm21 libmunge2 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi40 libpciaccess0 libperl5.42 libpmix2t64 libprrte-bin libprrte4 libpsm2-2 librdmacm1t64 libscalapack-openmpi2.2 libsymspg2 libsystemd-shared libucc1 libucx0 libx11-6 libx11-data libxau6 libxc9 libxcb1 libxdmcp6 libxext6 libxml2-16 libxnvctrl0 libz3-4 libze1 mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client openssh-common pci.ids perl perl-modules-5.42 prrte-common systemd Suggested packages: libfftw3-bin libfftw3-dev fuse3 gdbm-l10n libhwloc-contrib-plugins sensible-utils scalapack-doc libarchive13t64 libcurl4t64 libdw1t64 libfdisk1 libgcrypt20 libidn2-0 libmicrohttpd12t64 libp11-kit0 libpwquality1 libqrencode4 libtss2-esys-3.0.2-0t64 libtss2-mu-4.0.1-0t64 libtss2-rc0t64 libtss2-tcti-device0t64 opencl-icd gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl systemd-container systemd-homed systemd-imds systemd-userdbd systemd-boot systemd-report systemd-resolved systemd-repart polkitd Recommended packages: libclang-rt-21-dev libpmix-dev libapparmor1 libbpf1 libcryptsetup12 libkmod2 xauth netbase default-dbus-system-bus | dbus-system-bus linux-sysctl-defaults systemd-timesyncd | time-daemon systemd-tpm systemd-cryptsetup libgcrypt20 The following NEW packages will be installed: cp2k cp2k-data ibverbs-providers libamd-comgr3 libamdhip64-6 libblas3 libcbor0.10 libclang-common-21-dev libdrm-amdgpu1 libdrm-common libdrm2 libedit2 libelf1t64 libelpa19 libesmtp6 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 libffi8 libfftw3-double3 libfido2-1 libfuse3-4 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgomp1 libhsa-runtime64-1 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs1 libint2-2t64 liblapack3 libllvm21 libmunge2 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi40 libpciaccess0 libperl5.42 libpmix2t64 libprrte-bin libprrte4 libpsm2-2 librdmacm1t64 libscalapack-openmpi2.2 libsymspg2 libsystemd-shared libucc1 libucx0 libx11-6 libx11-data libxau6 libxc9 libxcb1 libxdmcp6 libxext6 libxml2-16 libxnvctrl0 libz3-4 libze1 mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client openssh-common pci.ids perl perl-modules-5.42 prrte-common systemd 0 upgraded, 74 newly installed, 0 to remove and 0 not upgraded. Need to get 153 MB of archives. After this operation, 843 MB of additional disk space will be used. 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mpi-default-bin amd64 1.20 [2720 B] Get:68 http://deb.debian.org/debian sid/main amd64 libscalapack-openmpi2.2 amd64 2.2.3-5 [1673 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libelpa19 amd64 2022.11.001-4 [437 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libfftw3-double3 amd64 3.3.11-1 [713 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libint2-2t64 amd64 2.7.2-1.2 [4722 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libsymspg2 amd64 2.7.0-1+b1 [193 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libxc9 amd64 5.2.3-3.1 [3852 kB] Get:74 http://deb.debian.org/debian sid/main amd64 cp2k amd64 2025.2-3 [19.0 MB] Fetched 153 MB in 6s (24.3 MB/s) Selecting previously unselected package libsystemd-shared:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4980 files and directories currently installed.) Preparing to unpack .../libsystemd-shared_261.2-1_amd64.deb ... Unpacking libsystemd-shared:amd64 (261.2-1) ... Setting up libsystemd-shared:amd64 (261.2-1) ... Selecting previously unselected package systemd. (Reading database ... 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Preparing to unpack .../37-libxnvctrl0_535.171.04-1+b3_amd64.deb ... Unpacking libxnvctrl0:amd64 (535.171.04-1+b3) ... Selecting previously unselected package libze1:amd64. Preparing to unpack .../38-libze1_1.32.0-1_amd64.deb ... Unpacking libze1:amd64 (1.32.0-1) ... Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../39-ocl-icd-libopencl1_2.3.4-1+b1_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.3.4-1+b1) ... Selecting previously unselected package libhwloc-plugins:amd64. Preparing to unpack .../40-libhwloc-plugins_2.14.0-2_amd64.deb ... Unpacking libhwloc-plugins:amd64 (2.14.0-2) ... Selecting previously unselected package libpmix2t64:amd64. Preparing to unpack .../41-libpmix2t64_6.1.1~rc2-4_amd64.deb ... Unpacking libpmix2t64:amd64 (6.1.1~rc2-4) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../42-libffi8_3.8.0-2_amd64.deb ... Unpacking libffi8:amd64 (3.8.0-2) ... 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Unpacking libdrm2:amd64 (2.4.134-3) ... Selecting previously unselected package libdrm-amdgpu1:amd64. Preparing to unpack .../49-libdrm-amdgpu1_2.4.134-3_amd64.deb ... Unpacking libdrm-amdgpu1:amd64 (2.4.134-3) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../50-libelf1t64_0.195-1_amd64.deb ... Unpacking libelf1t64:amd64 (0.195-1) ... Selecting previously unselected package libhsa-runtime64-1:amd64. Preparing to unpack .../51-libhsa-runtime64-1_6.4.3+dfsg-5_amd64.deb ... Unpacking libhsa-runtime64-1:amd64 (6.4.3+dfsg-5) ... Selecting previously unselected package libamdhip64-6:amd64. Preparing to unpack .../52-libamdhip64-6_6.4.3-5_amd64.deb ... Unpacking libamdhip64-6:amd64 (6.4.3-5) ... Selecting previously unselected package libfuse3-4:amd64. Preparing to unpack .../53-libfuse3-4_3.18.2-2_amd64.deb ... Unpacking libfuse3-4:amd64 (3.18.2-2) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../54-libgomp1_16.2.0-1_amd64.deb ... Unpacking libgomp1:amd64 (16.2.0-1) ... Selecting previously unselected package libibumad3:amd64. Preparing to unpack .../55-libibumad3_63.0-2_amd64.deb ... Unpacking libibumad3:amd64 (63.0-2) ... Selecting previously unselected package libibmad5:amd64. Preparing to unpack .../56-libibmad5_63.0-2_amd64.deb ... Unpacking libibmad5:amd64 (63.0-2) ... Selecting previously unselected package libucx0:amd64. Preparing to unpack .../57-libucx0_1.22.0-1_amd64.deb ... Unpacking libucx0:amd64 (1.22.0-1) ... Selecting previously unselected package libucc1:amd64. Preparing to unpack .../58-libucc1_1.8.0-2_amd64.deb ... Unpacking libucc1:amd64 (1.8.0-2) ... Selecting previously unselected package libopenmpi40:amd64. Preparing to unpack .../59-libopenmpi40_5.0.10-5_amd64.deb ... Unpacking libopenmpi40:amd64 (5.0.10-5) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../60-openmpi-common_5.0.10-5_all.deb ... Unpacking openmpi-common (5.0.10-5) ... Selecting previously unselected package libprrte4:amd64. Preparing to unpack .../61-libprrte4_4.1.1~rc2-7_amd64.deb ... Unpacking libprrte4:amd64 (4.1.1~rc2-7) ... Selecting previously unselected package prrte-common. Preparing to unpack .../62-prrte-common_4.1.1~rc2-7_all.deb ... Unpacking prrte-common (4.1.1~rc2-7) ... Selecting previously unselected package libprrte-bin. Preparing to unpack .../63-libprrte-bin_4.1.1~rc2-7_amd64.deb ... Unpacking libprrte-bin (4.1.1~rc2-7) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../64-openmpi-bin_5.0.10-5_amd64.deb ... Unpacking openmpi-bin (5.0.10-5) ... Selecting previously unselected package mpi-default-bin. Preparing to unpack .../65-mpi-default-bin_1.20_amd64.deb ... Unpacking mpi-default-bin (1.20) ... Selecting previously unselected package libscalapack-openmpi2.2:amd64. Preparing to unpack .../66-libscalapack-openmpi2.2_2.2.3-5_amd64.deb ... Unpacking libscalapack-openmpi2.2:amd64 (2.2.3-5) ... Selecting previously unselected package libelpa19. Preparing to unpack .../67-libelpa19_2022.11.001-4_amd64.deb ... Unpacking libelpa19 (2022.11.001-4) ... Selecting previously unselected package libfftw3-double3:amd64. Preparing to unpack .../68-libfftw3-double3_3.3.11-1_amd64.deb ... Unpacking libfftw3-double3:amd64 (3.3.11-1) ... Selecting previously unselected package libint2-2t64. Preparing to unpack .../69-libint2-2t64_2.7.2-1.2_amd64.deb ... Unpacking libint2-2t64 (2.7.2-1.2) ... Selecting previously unselected package libsymspg2:amd64. Preparing to unpack .../70-libsymspg2_2.7.0-1+b1_amd64.deb ... Unpacking libsymspg2:amd64 (2.7.0-1+b1) ... Selecting previously unselected package libxc9:amd64. Preparing to unpack .../71-libxc9_5.2.3-3.1_amd64.deb ... Unpacking libxc9:amd64 (5.2.3-3.1) ... Selecting previously unselected package cp2k. Preparing to unpack .../72-cp2k_2025.2-3_amd64.deb ... Unpacking cp2k (2025.2-3) ... Setting up libxau6:amd64 (1:1.0.11-1+b2) ... Setting up libxdmcp6:amd64 (1:1.1.5-2+b1) ... Setting up pci.ids (0.0~2026.07.21-1) ... Setting up libxcb1:amd64 (1.17.0-2+b2) ... Setting up libgdbm6t64:amd64 (1.26-1+b2) ... Setting up libgdbm-compat4t64:amd64 (1.26-1+b2) ... Setting up libcbor0.10:amd64 (0.10.2-2.2) ... Setting up libxml2-16:amd64 (2.15.3+dfsg-1) ... Setting up libedit2:amd64 (3.1-20260512-1) ... Setting up libibumad3:amd64 (63.0-2) ... Setting up systemd (261.2-1) ... Created symlink '/etc/systemd/system/multi-user.target.wants/remote-fs.target' → '/usr/lib/systemd/system/remote-fs.target'. Created symlink '/etc/systemd/system/sysinit.target.wants/systemd-pstore.service' → '/usr/lib/systemd/system/systemd-pstore.service'. Created symlink '/etc/systemd/system/autovt@.service' → '/usr/lib/systemd/system/getty@.service'. Created symlink '/etc/systemd/system/getty.target.wants/getty@tty1.service' → '/usr/lib/systemd/system/getty@.service'. Initializing machine ID from random generator. Creating group 'lpadmin' with GID 999. Creating group 'systemd-journal' with GID 998. Creating group 'systemd-network' with GID 997. Creating user 'systemd-network' (systemd Network Management) with UID 997 and GID 997. [ESC][0;1;31m"/home" already exists and is not a directory.[ESC][0m Setting up libesmtp6:amd64 (1.1.0-3.2+b2) ... Setting up libibmad5:amd64 (63.0-2) ... Setting up libgomp1:amd64 (16.2.0-1) ... Setting up libze1:amd64 (1.32.0-1) ... Setting up libelf1t64:amd64 (0.195-1) ... Setting up libsymspg2:amd64 (2.7.0-1+b1) ... Setting up libz3-4:amd64 (4.13.3-1.1) ... Setting up libblas3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libmunge2:amd64 (0.5.18-1) ... Setting up libx11-data (2:1.8.13-1) ... Setting up cp2k-data (2025.2-3) ... Setting up libhwloc15:amd64 (2.14.0-2) ... Setting up libfftw3-double3:amd64 (3.3.11-1) ... Setting up libgfortran5:amd64 (16.2.0-1) ... Setting up libffi8:amd64 (3.8.0-2) ... Setting up libnuma1:amd64 (2.0.19-1+b2) ... Setting up ocl-icd-libopencl1:amd64 (2.3.4-1+b1) ... Setting up libnl-3-200:amd64 (3.12.0-2+b1) ... Setting up libpsm2-2 (11.2.185-2.1) ... Setting up openmpi-common (5.0.10-5) ... Setting up libx11-6:amd64 (2:1.8.13-1) ... Setting up libevent-core-2.1-7t64:amd64 (2.1.13-stable-1) ... Setting up libclang-common-21-dev:amd64 (1:21.1.8-10) ... Setting up libint2-2t64 (2.7.2-1.2) ... Setting up libfuse3-4:amd64 (3.18.2-2) ... Setting up perl-modules-5.42 (5.42.3-1) ... Setting up libfido2-1:amd64 (1.17.0-2) ... Setting up libdrm-common (2.4.134-3) ... Setting up prrte-common (4.1.1~rc2-7) ... Setting up libxc9:amd64 (5.2.3-3.1) ... Setting up libpciaccess0:amd64 (0.19-2) ... Setting up liblapack3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up openssh-common (1:10.4p1-5) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.13-stable-1) ... Setting up openssh-client (1:10.4p1-5) ... Creating group '_ssh' with GID 996. Created symlink '/etc/systemd/user/sockets.target.wants/ssh-agent.socket' → '/usr/lib/systemd/user/ssh-agent.socket'. Setting up libxext6:amd64 (2:1.3.4-1+b4) ... Setting up libperl5.42:amd64 (5.42.3-1) ... Setting up libnl-route-3-200:amd64 (3.12.0-2+b1) ... Setting up libxnvctrl0:amd64 (535.171.04-1+b3) ... Setting up perl (5.42.3-1) ... Setting up libllvm21:amd64 (1:21.1.8-10) ... Setting up libdrm2:amd64 (2.4.134-3) ... Setting up libamd-comgr3:amd64 (7.0.2+dfsg-3) ... Setting up libdrm-amdgpu1:amd64 (2.4.134-3) ... Setting up libibverbs1:amd64 (63.0-2) ... Creating group 'rdma' with GID 995. Setting up ibverbs-providers:amd64 (63.0-2) ... Setting up libhwloc-plugins:amd64 (2.14.0-2) ... Setting up libpmix2t64:amd64 (6.1.1~rc2-4) ... Setting up libhsa-runtime64-1:amd64 (6.4.3+dfsg-5) ... Setting up librdmacm1t64:amd64 (63.0-2) ... Setting up libfabric1:amd64 (2.1.0-1.1+b2) ... Setting up libprrte4:amd64 (4.1.1~rc2-7) ... Setting up libamdhip64-6:amd64 (6.4.3-5) ... Setting up libprrte-bin (4.1.1~rc2-7) ... Setting up libucx0:amd64 (1.22.0-1) ... Setting up libucc1:amd64 (1.8.0-2) ... Setting up libopenmpi40:amd64 (5.0.10-5) ... Setting up openmpi-bin (5.0.10-5) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up mpi-default-bin (1.20) ... Setting up libscalapack-openmpi2.2:amd64 (2.2.3-5) ... Setting up libelpa19 (2022.11.001-4) ... Setting up cp2k (2025.2-3) ... Processing triggers for libc-bin (2.43-4) ... 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-get', '-y', 'install', 'cp2k'] 0m24.7s INFO: Running scripts post_install 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_install_exceptions'] 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_install_exceptions'] 0m24.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y'] 0m25.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y'] 0m25.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpw4rrvx5y to experimental 0m25.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main deb http://deb.debian.org/debian/ experimental main 0m25.6s INFO: Running scripts pre_distupgrade 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_distupgrade_exceptions'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_distupgrade_exceptions'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-get', 'update'] 0m27.0s DUMP: Hit:1 http://deb.debian.org/debian sid InRelease Get:2 http://deb.debian.org/debian experimental InRelease [91.7 kB] Get:3 http://deb.debian.org/debian experimental/main amd64 Packages [453 kB] Get:4 http://deb.debian.org/debian experimental/main Translation-en [273 kB] Fetched 818 kB in 1s (1540 kB/s) Reading package lists... 0m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-get', 'update'] 0m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-get', '-yf', 'dist-upgrade'] 0m27.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m27.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-get', '-yf', 'dist-upgrade'] 0m27.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m28.1s DUMP: 04519f9d14ab5961d9872039a86e477f - 0m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-cache', 'show', '--no-all-versions', 'cp2k'] 0m28.3s DUMP: Package: cp2k Version: 2025.2-3 Installed-Size: 61232 Maintainer: Debichem Team Architecture: amd64 Depends: cp2k-data (= 2025.2-3), libblas3 | libblas.so.3, libc6 (>= 2.38), libelpa19 (>= 2022.11.001), libfftw3-double3 (>= 3.3.10), libgcc-s1 (>= 4.0), libgfortran5 (>= 10), libgomp1 (>= 6), libint2-2t64, liblapack3 | liblapack.so.3, libopenmpi40 (>= 5.0.9), libscalapack-openmpi2.2 (>= 2.2.2), libsymspg2 (>= 2.6.0), libxc9 (>= 5.1.6) Description-en: Ab Initio Molecular Dynamics CP2K is a program to perform simulations of solid state, liquid, molecular and biological systems. It is especially aimed at massively parallel and linear scaling electronic structure methods and state-of-the-art ab-initio molecular dynamics (AIMD) simulations. . CP2K is optimized for the mixed Gaussian and Plane-Waves (GPW) method based on pseudopotentials, but is able to run all-electron or pure plane-wave/Gaussian calculations as well. Features include: . Ab-initio Electronic Structure Theory Methods using the QUICKSTEP module: . * Density-Functional Theory (DFT) energies and forces * Hartree-Fock (HF) energies and forces * Moeller-Plesset 2nd order perturbation theory (MP2) energies and forces * Random Phase Approximation (RPA) energies * Gas phase or Periodic boundary conditions (PBC) * Basis sets include various standard Gaussian-Type Orbitals (GTOs), Pseudo- potential plane-waves (PW), and a mixed Gaussian and (augmented) plane wave approach (GPW/GAPW) * Norm-conserving, seperable Goedecker-Teter-Hutter (GTH) and non-linear core corrected (NLCC) pseudopotentials, or all-electron calculations * Local Density Approximation (LDA) XC functionals including SVWN3, SVWN5, PW92 and PADE * Gradient-corrected (GGA) XC functionals including BLYP, BP86, PW91, PBE and HCTH120 as well as the meta-GGA XC functional TPSS * Hybrid XC functionals with exact Hartree-Fock Exchange (HFX) including B3LYP, PBE0 and MCY3 * Double-hybrid XC functionals including B2PLYP and B2GPPLYP * Additional XC functionals via LibXC * Dispersion corrections via DFT-D2 and DFT-D3 pair-potential models * Non-local van der Waals corrections for XC functionals including B88-vdW, PBE-vdW and B97X-D * DFT+U (Hubbard) correction * Density-Fitting for DFT via Bloechl or Density Derived Atomic Point Charges (DDAPC) charges, for HFX via Auxiliary Density Matrix Methods (ADMM) and for MP2/RPA via Resolution-of-identity (RI) * Sparse matrix and prescreening techniques for linear-scaling Kohn-Sham (KS) matrix computation * Orbital Transformation (OT) or Direct Inversion of the iterative subspace (DIIS) self-consistent field (SCF) minimizer * Local Resolution-of-Identity Projector Augmented Wave method (LRIGPW) * Absolutely Localized Molecular Orbitals SCF (ALMO-SCF) energies for linear scaling of molecular systems * Excited states via time-dependent density-functional perturbation theory (TDDFPT) . Ab-initio Molecular Dynamics: . * Born-Oppenheimer Molecular Dynamics (BOMD) * Ehrenfest Molecular Dynamics (EMD) * PS extrapolation of initial wavefunction * Time-reversible Always Stable Predictor-Corrector (ASPC) integrator * Approximate Car-Parrinello like Langevin Born-Oppenheimer Molecular Dynamics (Second-Generation Car-Parrinello Molecular Dynamics (SGCP)) . Mixed quantum-classical (QM/MM) simulations: . * Real-space multigrid approach for the evaluation of the Coulomb interactions between the QM and the MM part * Linear-scaling electrostatic coupling treating of periodic boundary conditions * Adaptive QM/MM . Further Features include: . * Single-point energies, geometry optimizations and frequency calculations * Several nudged-elastic band (NEB) algorithms (B-NEB, IT-NEB, CI-NEB, D-NEB) for minimum energy path (MEP) calculations * Global optimization of geometries * Solvation via the Self-Consistent Continuum Solvation (SCCS) model * Semi-Empirical calculations including the AM1, RM1, PM3, MNDO, MNDO-d, PNNL and PM6 parametrizations, density-functional tight-binding (DFTB) and self-consistent-polarization tight-binding (SCP-TB), with or without periodic boundary conditions * Classical Molecular Dynamics (MD) simulations in microcanonical ensemble (NVE) or canonical ensmble (NVT) with Nose-Hover and canonical sampling through velocity rescaling (CSVR) thermostats * Metadynamics including well-tempered Metadynamics for Free Energy calculations * Classical Force-Field (MM) simulations * Monte-Carlo (MC) KS-DFT simulations * Static (e.g. spectra) and dynamical (e.g. diffusion) properties * ATOM code for pseudopotential generation * Integrated molecular basis set optimization . CP2K does not implement conventional Car-Parrinello Molecular Dynamics (CPMD). Description-md5: 37c89754b1cfba92136be3fd32ced61d Homepage: http://www.cp2k.org Section: science Priority: optional Filename: pool/main/c/cp2k/cp2k_2025.2-3_amd64.deb Size: 18998724 MD5sum: 43eda1408161755f118a61d0ed303229 SHA256: 22693f55dcc33a41c32836cfe1d751914b9b7d51d796fc60b183b92493440e2a 0m28.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-cache', 'show', '--no-all-versions', 'cp2k'] 0m28.3s INFO: apt-cache knows about the following packages: cp2k 0m28.3s INFO: Running scripts pre_install 0m28.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_database-server'] 0m28.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_database-server'] 0m28.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_exceptions'] 0m28.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_exceptions'] 0m28.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_extras'] 0m28.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_extras'] 0m28.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_foreign_architecture'] 0m28.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_foreign_architecture'] 0m28.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m28.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m28.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-cache', 'policy'] 0m28.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 1 http://deb.debian.org/debian experimental/main amd64 Packages release o=Debian,a=experimental,n=rc-buggy,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-cache', 'policy'] 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-cache', 'policy', 'cp2k'] 0m28.4s DUMP: cp2k: Installed: 2025.2-3 Candidate: 2025.2-3 Version table: 2026.2-1 1 1 http://deb.debian.org/debian experimental/main amd64 Packages *** 2025.2-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-cache', 'policy', 'cp2k'] 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-get', '-y', '-t', 'experimental', 'install', 'cp2k'] 0m33.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following package was automatically installed and is no longer required: libxc9 Use 'sudo apt autoremove' to remove it. The following additional packages will be installed: cp2k-data libxc15 The following NEW packages will be installed: libxc15 The following packages will be upgraded: cp2k cp2k-data 2 upgraded, 1 newly installed, 0 to remove and 12 not upgraded. Need to get 55.6 MB of archives. After this operation, 56.2 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian experimental/main amd64 cp2k amd64 2026.2-1 [15.0 MB] Get:2 http://deb.debian.org/debian experimental/main amd64 cp2k-data all 2026.2-1 [36.2 MB] Get:3 http://deb.debian.org/debian experimental/main amd64 libxc15 amd64 7.1.2-1 [4456 kB] Fetched 55.6 MB in 1s (58.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13985 files and directories currently installed.) Preparing to unpack .../cp2k_2026.2-1_amd64.deb ... Unpacking cp2k (2026.2-1) over (2025.2-3) ... Preparing to unpack .../cp2k-data_2026.2-1_all.deb ... Unpacking cp2k-data (2026.2-1) over (2025.2-3) ... Selecting previously unselected package libxc15:amd64. Preparing to unpack .../libxc15_7.1.2-1_amd64.deb ... Unpacking libxc15:amd64 (7.1.2-1) ... Setting up cp2k-data (2026.2-1) ... Setting up libxc15:amd64 (7.1.2-1) ... Setting up cp2k (2026.2-1) ... Processing triggers for libc-bin (2.43-4) ... 0m33.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-get', '-y', '-t', 'experimental', 'install', 'cp2k'] 0m33.5s INFO: Running scripts post_install 0m33.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_install_exceptions'] 0m33.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_install_exceptions'] 0m33.5s INFO: Running scripts post_distupgrade 0m33.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m33.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m33.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_distupgrade_exceptions'] 0m33.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_distupgrade_exceptions'] 0m33.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m33.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m33.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m33.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m33.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_distupgrade_zz_backports'] 0m33.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_distupgrade_zz_backports'] 0m33.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y'] 0m34.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y'] 0m34.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y'] 0m35.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y'] 0m35.4s INFO: Running scripts pre_install 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_database-server'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_database-server'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_exceptions'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_exceptions'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_extras'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_extras'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_foreign_architecture'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_foreign_architecture'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-cache', 'policy'] 0m35.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 1 http://deb.debian.org/debian experimental/main amd64 Packages release o=Debian,a=experimental,n=rc-buggy,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-cache', 'policy'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-cache', 'policy', 'cp2k'] 0m35.5s DUMP: cp2k: Installed: 2026.2-1 Candidate: 2026.2-1 Version table: *** 2026.2-1 100 1 http://deb.debian.org/debian experimental/main amd64 Packages 100 /var/lib/dpkg/status 2025.2-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-cache', 'policy', 'cp2k'] 0m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-get', '-y', '-t', 'experimental', 'install', 'cp2k=2026.2-1'] 0m36.0s DUMP: Reading package lists... Building dependency tree... Reading state information... cp2k is already the newest version (2026.2-1). Solving dependencies... The following package was automatically installed and is no longer required: libxc9 Use 'sudo apt autoremove' to remove it. 0 upgraded, 0 newly installed, 0 to remove and 12 not upgraded. 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-get', '-y', '-t', 'experimental', 'install', 'cp2k=2026.2-1'] 0m36.0s INFO: Running scripts post_install 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_install_exceptions'] 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_install_exceptions'] 0m36.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y'] 0m37.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y'] 0m38.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', '-ac', '--ignore-obsolete'] 0m42.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', '-ac', '--ignore-obsolete'] 0m42.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m42.1s DUMP: 0.15.9~deb12u1 0m42.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m42.1s INFO: Running adequate version 0.15.9~deb12u1 now. 0m42.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'cp2k'] 0m42.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'cp2k'] 0m42.2s INFO: Running scripts pre_remove 0m42.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m42.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m42.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m42.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m42.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m44.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m44.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m44.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m44.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m44.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m44.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_remove_exceptions'] 0m44.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/pre_remove_exceptions'] 0m44.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m44.5s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-3+b1 install ok installed bsdutils bsdutils 1:2.42.2-3 install ok installed coreutils coreutils 9.10-1 install ok installed cp2k cp2k 2026.2-1 install ok installed cp2k-data cp2k-data 2026.2-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.7 install ok installed findutils findutils 4.11.0-2 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-1 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hostname hostname 3.25 install ok installed ibverbs-providers:amd64 ibverbs-providers 63.0-2 install ok installed init-system-helpers init-system-helpers 1.69+nmu1 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libamd-comgr3:amd64 libamd-comgr3 7.0.2+dfsg-3 install ok installed libamdhip64-6:amd64 libamdhip64-6 6.4.3-5 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libblas3:amd64 libblas3 3.12.1-8 install ok installed libblkid1:amd64 libblkid1 2.42.2-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-4 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-4 install ok installed libc6:amd64 libc6 2.43-4 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.3-1+b1 install ok installed libcbor0.10:amd64 libcbor0.10 0.10.2-2.2 install ok installed libclang-common-21-dev:amd64 libclang-common-21-dev 1:21.1.8-10 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.134-3 install ok installed libdrm-common libdrm-common 2.4.134-3 install ok installed libdrm2:amd64 libdrm2 2.4.134-3 install ok installed libedit2:amd64 libedit2 3.1-20260512-1 install ok installed libelf1t64:amd64 libelf1t64 0.195-1 install ok installed libelpa19 libelpa19 2022.11.001-4 install ok installed libesmtp6:amd64 libesmtp6 1.1.0-3.2+b2 install ok installed libevent-core-2.1-7t64:amd64 libevent-core-2.1-7t64 2.1.13-stable-1 install ok installed libevent-pthreads-2.1-7t64:amd64 libevent-pthreads-2.1-7t64 2.1.13-stable-1 install ok installed libfabric1:amd64 libfabric1 2.1.0-1.1+b2 install ok installed libffi8:amd64 libffi8 3.8.0-2 install ok installed libfftw3-double3:amd64 libfftw3-double3 3.3.11-1 install ok installed libfido2-1:amd64 libfido2-1 1.17.0-2 install ok installed libfuse3-4:amd64 libfuse3-4 3.18.2-2 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-1 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1+b2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1+b2 install ok installed libgfortran5:amd64 libgfortran5 16.2.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgomp1:amd64 libgomp1 16.2.0-1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed libhsa-runtime64-1:amd64 libhsa-runtime64-1 6.4.3+dfsg-5 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.14.0-2 install ok installed libhwloc15:amd64 libhwloc15 2.14.0-2 install ok installed libibmad5:amd64 libibmad5 63.0-2 install ok installed libibumad3:amd64 libibumad3 63.0-2 install ok installed libibverbs1:amd64 libibverbs1 63.0-2 install ok installed libint2-2t64 libint2-2t64 2.7.2-1.2 install ok installed liblapack3:amd64 liblapack3 3.12.1-8 install ok installed libllvm21:amd64 libllvm21 1:21.1.8-10 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.3-1 install ok installed libmd0:amd64 libmd0 1.2.0-2 install ok installed libmount1:amd64 libmount1 2.42.2-3 install ok installed libmunge2:amd64 libmunge2 0.5.18-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libnl-3-200:amd64 libnl-3-200 3.12.0-2+b1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.12.0-2+b1 install ok installed libnuma1:amd64 libnuma1 2.0.19-1+b2 install ok installed libopenmpi40:amd64 libopenmpi40 5.0.10-5 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpciaccess0:amd64 libpciaccess0 0.19-2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1+b2 install ok installed libperl5.42:amd64 libperl5.42 5.42.3-1 install ok installed libpmix2t64:amd64 libpmix2t64 6.1.1~rc2-4 install ok installed libprrte-bin libprrte-bin 4.1.1~rc2-7 install ok installed libprrte4:amd64 libprrte4 4.1.1~rc2-7 install ok installed libpsm2-2 libpsm2-2 11.2.185-2.1 install ok installed librdmacm1t64:amd64 librdmacm1t64 63.0-2 install ok installed libscalapack-openmpi2.2:amd64 libscalapack-openmpi2.2 2.2.3-5 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1 install ok installed libselinux1:amd64 libselinux1 3.11-2 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.2-3 install ok installed libssl3t64:amd64 libssl3t64 3.6.3-1 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-1 install ok installed libsymspg2:amd64 libsymspg2 2.7.0-1+b1 install ok installed libsystemd-shared:amd64 libsystemd-shared 261.2-1 install ok installed libsystemd0:amd64 libsystemd0 261.2-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libucc1:amd64 libucc1 1.8.0-2 install ok installed libucx0:amd64 libucx0 1.22.0-1 install ok installed libudev1:amd64 libudev1 261.2-1 install ok installed libuuid1:amd64 libuuid1 2.42.2-3 install ok installed libx11-6:amd64 libx11-6 2:1.8.13-1 install ok installed libx11-data libx11-data 2:1.8.13-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1+b2 install ok installed libxc15:amd64 libxc15 7.1.2-1 install ok installed libxc9:amd64 libxc9 5.2.3-3.1 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-2+b1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b4 install ok installed libxml2-16:amd64 libxml2-16 2.15.3+dfsg-1 install ok installed libxnvctrl0:amd64 libxnvctrl0 535.171.04-1+b3 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libz3-4:amd64 libz3-4 4.13.3-1.1 install ok installed libze1:amd64 libze1 1.32.0-1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed login login 1:4.16.0-2+really2.42.2-3 install ok installed login.defs login.defs 1:4.19.3-2 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed mount mount 2.42.2-3 install ok installed mpi-default-bin mpi-default-bin 1.20 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.3.4-1+b1 install ok installed openmpi-bin openmpi-bin 5.0.10-5 install ok installed openmpi-common openmpi-common 5.0.10-5 install ok installed openssh-client openssh-client 1:10.4p1-5 install ok installed openssh-common openssh-common 1:10.4p1-5 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.3-1 install ok installed passwd passwd 1:4.19.3-2 install ok installed pci.ids pci.ids 0.0~2026.07.21-1 install ok installed perl perl 5.42.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed perl-modules-5.42 perl-modules-5.42 5.42.3-1 install ok installed prrte-common prrte-common 4.1.1~rc2-7 install ok installed sed sed 4.9-3 install ok installed sqv sqv 1.4.0-1 install ok installed systemd systemd 261.2-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-5 install ok installed tzdata tzdata 2026c-1 install ok installed util-linux util-linux 2.42.2-3 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 0m44.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m44.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-get', 'remove', '--allow-remove-essential', 'cp2k-data', 'ibverbs-providers:amd64', 'libamd-comgr3:amd64', 'libamdhip64-6:amd64', 'libblas3:amd64', 'libcbor0.10:amd64', 'libclang-common-21-dev:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libelpa19', 'libesmtp6:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libfabric1:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfido2-1:amd64', 'libfuse3-4:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhsa-runtime64-1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libint2-2t64', 'liblapack3:amd64', 'libllvm21:amd64', 'libmunge2:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libpciaccess0:amd64', 'libperl5.42:amd64', 'libpmix2t64:amd64', 'libprrte-bin', 'libprrte4:amd64', 'libpsm2-2', 'librdmacm1t64:amd64', 'libscalapack-openmpi2.2:amd64', 'libsymspg2:amd64', 'libsystemd-shared:amd64', 'libucc1:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxc15:amd64', 'libxc9:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2-16:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'libze1:amd64', 'mpi-default-bin', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssh-common', 'pci.ids', 'perl', 'perl-modules-5.42', 'prrte-common', 'systemd', 'cp2k'] 0m46.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: cp2k cp2k-data ibverbs-providers libamd-comgr3 libamdhip64-6 libblas3 libcbor0.10 libclang-common-21-dev libdrm-amdgpu1 libdrm-common libdrm2 libedit2 libelf1t64 libelpa19 libesmtp6 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 libffi8 libfftw3-double3 libfido2-1 libfuse3-4 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libgomp1 libhsa-runtime64-1 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs1 libint2-2t64 liblapack3 libllvm21 libmunge2 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi40 libpciaccess0 libperl5.42 libpmix2t64 libprrte-bin libprrte4 libpsm2-2 librdmacm1t64 libscalapack-openmpi2.2 libsymspg2 libsystemd-shared libucc1 libucx0 libx11-6 libx11-data libxau6 libxc15 libxc9 libxcb1 libxdmcp6 libxext6 libxml2-16 libxnvctrl0 libz3-4 libze1 mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client openssh-common pci.ids perl perl-modules-5.42 prrte-common systemd 0 upgraded, 0 newly installed, 75 to remove and 0 not upgraded. After this operation, 899 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14356 files and directories currently installed.) Removing cp2k (2026.2-1) ... Removing cp2k-data (2026.2-1) ... Removing libelpa19 (2022.11.001-4) ... Removing libscalapack-openmpi2.2:amd64 (2.2.3-5) ... Removing liblapack3:amd64 (3.12.1-8) ... Removing libblas3:amd64 (3.12.1-8) ... Removing mpi-default-bin (1.20) ... Removing openmpi-bin (5.0.10-5) ... Removing openssh-client (1:10.4p1-5) ... Removing openssh-common (1:10.4p1-5) ... Removing libfido2-1:amd64 (1.17.0-2) ... Removing libcbor0.10:amd64 (0.10.2-2.2) ... Removing libprrte-bin (4.1.1~rc2-7) ... Removing libprrte4:amd64 (4.1.1~rc2-7) ... Removing libfftw3-double3:amd64 (3.3.11-1) ... Removing perl (5.42.3-1) ... Removing libperl5.42:amd64 (5.42.3-1) ... Removing libgdbm-compat4t64:amd64 (1.26-1+b2) ... Removing libgdbm6t64:amd64 (1.26-1+b2) ... Removing libxc15:amd64 (7.1.2-1) ... Removing libxc9:amd64 (5.2.3-3.1) ... Removing libgfortran5:amd64 (16.2.0-1) ... Removing libint2-2t64 (2.7.2-1.2) ... Removing libsymspg2:amd64 (2.7.0-1+b1) ... Removing openmpi-common (5.0.10-5) ... Removing perl-modules-5.42 (5.42.3-1) ... Removing prrte-common (4.1.1~rc2-7) ... Removing libopenmpi40:amd64 (5.0.10-5) ... Removing libfabric1:amd64 (2.1.0-1.1+b2) ... Removing ibverbs-providers:amd64 (63.0-2) ... Removing libucc1:amd64 (1.8.0-2) ... Removing libucx0:amd64 (1.22.0-1) ... Removing libamdhip64-6:amd64 (6.4.3-5) ... Removing libamd-comgr3:amd64 (7.0.2+dfsg-3) ... Removing libclang-common-21-dev:amd64 (1:21.1.8-10) ... Removing libhsa-runtime64-1:amd64 (6.4.3+dfsg-5) ... Removing libdrm-amdgpu1:amd64 (2.4.134-3) ... Removing libdrm2:amd64 (2.4.134-3) ... Removing libdrm-common (2.4.134-3) ... Removing libllvm21:amd64 (1:21.1.8-10) ... Removing libedit2:amd64 (3.1-20260512-1) ... Removing libelf1t64:amd64 (0.195-1) ... Removing libpmix2t64:amd64 (6.1.1~rc2-4) ... Removing libesmtp6:amd64 (1.1.0-3.2+b2) ... Removing libevent-pthreads-2.1-7t64:amd64 (2.1.13-stable-1) ... Removing libevent-core-2.1-7t64:amd64 (2.1.13-stable-1) ... Removing libffi8:amd64 (3.8.0-2) ... Removing libfuse3-4:amd64 (3.18.2-2) ... Removing libgomp1:amd64 (16.2.0-1) ... Removing libhwloc-plugins:amd64 (2.14.0-2) ... Removing libhwloc15:amd64 (2.14.0-2) ... Removing libibmad5:amd64 (63.0-2) ... Removing libibumad3:amd64 (63.0-2) ... Removing librdmacm1t64:amd64 (63.0-2) ... Removing libibverbs1:amd64 (63.0-2) ... Removing libmunge2:amd64 (0.5.18-1) ... Removing libnl-route-3-200:amd64 (3.12.0-2+b1) ... Removing libnl-3-200:amd64 (3.12.0-2+b1) ... Removing libpsm2-2 (11.2.185-2.1) ... Removing libnuma1:amd64 (2.0.19-1+b2) ... Removing libpciaccess0:amd64 (0.19-2) ... Removing systemd (261.2-1) ... Removing libsystemd-shared:amd64 (261.2-1) ... Removing libxnvctrl0:amd64 (535.171.04-1+b3) ... Removing libxext6:amd64 (2:1.3.4-1+b4) ... Removing libx11-6:amd64 (2:1.8.13-1) ... Removing libx11-data (2:1.8.13-1) ... Removing libxcb1:amd64 (1.17.0-2+b2) ... Removing libxau6:amd64 (1:1.0.11-1+b2) ... Removing libxdmcp6:amd64 (1:1.1.5-2+b1) ... Removing libxml2-16:amd64 (2.15.3+dfsg-1) ... Removing libz3-4:amd64 (4.13.3-1.1) ... Removing libze1:amd64 (1.32.0-1) ... Removing ocl-icd-libopencl1:amd64 (2.3.4-1+b1) ... Removing pci.ids (0.0~2026.07.21-1) ... Processing triggers for libc-bin (2.43-4) ... 0m46.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-get', 'remove', '--allow-remove-essential', 'cp2k-data', 'ibverbs-providers:amd64', 'libamd-comgr3:amd64', 'libamdhip64-6:amd64', 'libblas3:amd64', 'libcbor0.10:amd64', 'libclang-common-21-dev:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libelpa19', 'libesmtp6:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libfabric1:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfido2-1:amd64', 'libfuse3-4:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhsa-runtime64-1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libint2-2t64', 'liblapack3:amd64', 'libllvm21:amd64', 'libmunge2:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libpciaccess0:amd64', 'libperl5.42:amd64', 'libpmix2t64:amd64', 'libprrte-bin', 'libprrte4:amd64', 'libpsm2-2', 'librdmacm1t64:amd64', 'libscalapack-openmpi2.2:amd64', 'libsymspg2:amd64', 'libsystemd-shared:amd64', 'libucc1:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxc15:amd64', 'libxc9:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2-16:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'libze1:amd64', 'mpi-default-bin', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssh-common', 'pci.ids', 'perl', 'perl-modules-5.42', 'prrte-common', 'systemd', 'cp2k'] 0m46.1s INFO: Running scripts post_remove 0m46.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_remove_exceptions'] 0m46.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_remove_exceptions'] 0m46.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'dpkg', '--purge', 'cp2k-data', 'ibverbs-providers:amd64', 'libamd-comgr3:amd64', 'libamdhip64-6:amd64', 'libblas3:amd64', 'libcbor0.10:amd64', 'libclang-common-21-dev:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libelpa19', 'libesmtp6:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libfabric1:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfido2-1:amd64', 'libfuse3-4:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhsa-runtime64-1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libint2-2t64', 'liblapack3:amd64', 'libllvm21:amd64', 'libmunge2:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libpciaccess0:amd64', 'libperl5.42:amd64', 'libpmix2t64:amd64', 'libprrte-bin', 'libprrte4:amd64', 'libpsm2-2', 'librdmacm1t64:amd64', 'libscalapack-openmpi2.2:amd64', 'libsymspg2:amd64', 'libsystemd-shared:amd64', 'libucc1:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxc15:amd64', 'libxc9:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2-16:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'libze1:amd64', 'mpi-default-bin', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssh-common', 'pci.ids', 'perl', 'perl-modules-5.42', 'prrte-common', 'systemd'] 0m46.3s DUMP: dpkg: warning: ignoring request to remove cp2k-data which is not installed (Reading database ... 5022 files and directories currently installed.) Purging configuration files for ibverbs-providers:amd64 (63.0-2) ... dpkg: warning: ignoring request to remove libamd-comgr3 which is not installed dpkg: warning: ignoring request to remove libamdhip64-6 which is not installed dpkg: warning: ignoring request to remove libblas3 which is not installed dpkg: warning: ignoring request to remove libcbor0.10 which is not installed dpkg: warning: ignoring request to remove libclang-common-21-dev which is not installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which is not installed dpkg: warning: ignoring request to remove libdrm-common which is not installed dpkg: warning: ignoring request to remove libdrm2 which is not installed dpkg: warning: ignoring request to remove libedit2 which is not installed dpkg: warning: ignoring request to remove libelf1t64 which is not installed dpkg: warning: ignoring request to remove libelpa19 which is not installed dpkg: warning: ignoring request to remove libesmtp6 which is not installed dpkg: warning: ignoring request to remove libevent-core-2.1-7t64 which is not installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-7t64 which is not installed dpkg: warning: ignoring request to remove libfabric1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libfftw3-double3 which is not installed dpkg: warning: ignoring request to remove libfido2-1 which is not installed dpkg: warning: ignoring request to remove libfuse3-4 which is not installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which is not installed dpkg: warning: ignoring request to remove libgdbm6t64 which is not installed dpkg: warning: ignoring request to remove libgfortran5 which is not installed dpkg: warning: ignoring request to remove libgomp1 which is not installed dpkg: warning: ignoring request to remove libhsa-runtime64-1 which is not installed dpkg: warning: ignoring request to remove libhwloc-plugins which is not installed dpkg: warning: ignoring request to remove libhwloc15 which is not installed dpkg: warning: ignoring request to remove libibmad5 which is not installed dpkg: warning: ignoring request to remove libibumad3 which is not installed dpkg: warning: ignoring request to remove libibverbs1 which is not installed dpkg: warning: ignoring request to remove libint2-2t64 which is not installed dpkg: warning: ignoring request to remove liblapack3 which is not installed dpkg: warning: ignoring request to remove libllvm21 which is not installed dpkg: warning: ignoring request to remove libmunge2 which is not installed Purging configuration files for libnl-3-200:amd64 (3.12.0-2+b1) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which is not installed dpkg: warning: ignoring request to remove libnuma1 which is not installed dpkg: warning: ignoring request to remove libopenmpi40 which is not installed dpkg: warning: ignoring request to remove libpciaccess0 which is not installed dpkg: warning: ignoring request to remove libperl5.42 which is not installed dpkg: warning: ignoring request to remove libpmix2t64 which is not installed Purging configuration files for libprrte-bin (4.1.1~rc2-7) ... dpkg: warning: ignoring request to remove libprrte4 which is not installed dpkg: warning: ignoring request to remove libpsm2-2 which is not installed dpkg: warning: ignoring request to remove librdmacm1t64 which is not installed dpkg: warning: ignoring request to remove libscalapack-openmpi2.2 which is not installed dpkg: warning: ignoring request to remove libsymspg2 which is not installed dpkg: warning: ignoring request to remove libsystemd-shared which is not installed dpkg: warning: ignoring request to remove libucc1 which is not installed dpkg: warning: ignoring request to remove libucx0 which is not installed dpkg: warning: ignoring request to remove libx11-6 which is not installed dpkg: warning: ignoring request to remove libx11-data which is not installed dpkg: warning: ignoring request to remove libxau6 which is not installed dpkg: warning: ignoring request to remove libxc15 which is not installed dpkg: warning: ignoring request to remove libxc9 which is not installed dpkg: warning: ignoring request to remove libxcb1 which is not installed dpkg: warning: ignoring request to remove libxdmcp6 which is not installed dpkg: warning: ignoring request to remove libxext6 which is not installed dpkg: warning: ignoring request to remove libxml2-16 which is not installed dpkg: warning: ignoring request to remove libxnvctrl0 which is not installed dpkg: warning: ignoring request to remove libz3-4 which is not installed dpkg: warning: ignoring request to remove libze1 which is not installed dpkg: warning: ignoring request to remove mpi-default-bin which is not installed dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which is not installed Purging configuration files for openmpi-bin (5.0.10-5) ... dpkg: warning: ignoring request to remove openmpi-common which is not installed Purging configuration files for openssh-client (1:10.4p1-5) ... dpkg: warning: ignoring request to remove openssh-common which is not installed dpkg: warning: ignoring request to remove pci.ids which is not installed Purging configuration files for perl (5.42.3-1) ... dpkg: warning: ignoring request to remove perl-modules-5.42 which is not installed dpkg: warning: ignoring request to remove prrte-common which is not installed Purging configuration files for systemd (261.2-1) ... 0m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'dpkg', '--purge', 'cp2k-data', 'ibverbs-providers:amd64', 'libamd-comgr3:amd64', 'libamdhip64-6:amd64', 'libblas3:amd64', 'libcbor0.10:amd64', 'libclang-common-21-dev:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libedit2:amd64', 'libelf1t64:amd64', 'libelpa19', 'libesmtp6:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libfabric1:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfido2-1:amd64', 'libfuse3-4:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhsa-runtime64-1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibmad5:amd64', 'libibumad3:amd64', 'libibverbs1:amd64', 'libint2-2t64', 'liblapack3:amd64', 'libllvm21:amd64', 'libmunge2:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenmpi40:amd64', 'libpciaccess0:amd64', 'libperl5.42:amd64', 'libpmix2t64:amd64', 'libprrte-bin', 'libprrte4:amd64', 'libpsm2-2', 'librdmacm1t64:amd64', 'libscalapack-openmpi2.2:amd64', 'libsymspg2:amd64', 'libsystemd-shared:amd64', 'libucc1:amd64', 'libucx0:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxc15:amd64', 'libxc9:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxml2-16:amd64', 'libxnvctrl0:amd64', 'libz3-4:amd64', 'libze1:amd64', 'mpi-default-bin', 'ocl-icd-libopencl1:amd64', 'openmpi-bin', 'openmpi-common', 'openssh-client', 'openssh-common', 'pci.ids', 'perl', 'perl-modules-5.42', 'prrte-common', 'systemd'] 0m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'dpkg', '--purge', 'cp2k'] 0m46.3s DUMP: dpkg: warning: ignoring request to remove cp2k which is not installed 0m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'dpkg', '--purge', 'cp2k'] 0m46.3s INFO: Running scripts post_purge 0m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_purge_exceptions'] 0m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_purge_exceptions'] 0m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'dpkg', '--purge', '--pending'] 0m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'dpkg', '--purge', '--pending'] 0m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'dpkg', '--remove', '--pending'] 0m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'dpkg', '--remove', '--pending'] 0m46.4s INFO: Running scripts post_test 0m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_test_exceptions'] 0m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'tmp/scripts/post_test_exceptions'] 0m46.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y'] 0m46.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y'] 0m46.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'dpkg-divert', '--list'] 0m46.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m46.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'dpkg-divert', '--list'] 0m46.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-get', 'clean'] 0m46.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y', 'apt-get', 'clean'] 0m46.9s DEBUG: Recording chroot state 0m47.7s INFO: Warning: Package purging left files on system: /etc/default/locale -> ../locale.conf not owned /etc/vconsole.conf -> default/keyboard not owned /root/.ssh/ not owned /var/cache/private/ not owned /var/lib/private/ not owned /var/log/private/ not owned 0m48.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y/dev/shm'] 0m48.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y/dev/shm'] 0m48.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y/dev/console'] 0m48.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y/dev/console'] 0m48.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y/dev/ptmx'] 0m48.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y/dev/ptmx'] 0m48.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y/dev/pts'] 0m48.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y/dev/pts'] 0m48.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y/proc'] 0m48.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y/proc'] 0m48.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y'] 0m48.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpw4rrvx5y'] 0m48.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpw4rrvx5y 0m48.4s INFO: PASS: Upgrading between Debian distributions. 0m48.4s INFO: PASS: All tests. 0m48.4s INFO: piuparts run ends. ret=0 End: 2026-08-25 03:24:28 GMT