Start: 2024-04-24 20:40:12 GMT [sid] Package: fasta3-doc Source: fasta3 Version: 36.3.8i.14-Nov-2020-1 Installed-Size: 294 Maintainer: Debian Med Packaging Team Architecture: all Replaces: fasta3 (<< 36.3.8h) Breaks: fasta3 (<< 36.3.8h) Description: user guide for FASTA tools Multi-Arch: foreign Homepage: https://fasta.bioch.virginia.edu Description-md5: d8363a90c1f3049dede1153f13813e53 Section: doc Priority: optional Filename: pool/main/f/fasta3/fasta3-doc_36.3.8i.14-Nov-2020-1_all.deb Size: 284712 MD5sum: e4c7c17d822d9dfb92d4b2c55a085c1a SHA256: 443aa2beffdc73f79535686f76b3eb7dabadae7f4d32aea8a6dd58a60dc2901c [experimental] Package: fasta3-doc Source: fasta3 Version: 36.3.8i.14-Nov-2020-2~0exp0simde Installed-Size: 294 Maintainer: Debian Med Packaging Team Architecture: all Replaces: fasta3 (<< 36.3.8h) Breaks: fasta3 (<< 36.3.8h) Description: user guide for FASTA tools Multi-Arch: foreign Homepage: https://fasta.bioch.virginia.edu Description-md5: d8363a90c1f3049dede1153f13813e53 Section: doc Priority: optional Filename: pool/main/f/fasta3/fasta3-doc_36.3.8i.14-Nov-2020-2~0exp0simde_all.deb Size: 284812 MD5sum: 1085806851cfeb4af049ace3b39c88bc SHA256: e386fda777820ce3c75908233923aaec984e44540e11cdfb7a5b89fe7379e0cd Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid -d experimental -B /srv/piuparts.debian.org/slave/refchroot/sid2experimental/reference-chroot-metadata.dat --apt 'fasta3-doc=36.3.8i.14-Nov-2020-2~0exp0simde' 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.1~202403190841~1.4-4-g85045c69 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid -d experimental -B /srv/piuparts.debian.org/slave/refchroot/sid2experimental/reference-chroot-metadata.dat --apt 'fasta3-doc=36.3.8i.14-Nov-2020-2~0exp0simde' 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp77ekc8e5 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp77ekc8e5 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp77ekc8e5/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-get', 'update'] 0m4.5s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9872 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7196 kB] Fetched 17.3 MB in 4s (4893 kB/s) Reading package lists... 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-get', 'update'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-get', '-yf', 'dist-upgrade'] 0m6.7s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: apt libapt-pkg6.0t64 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2385 kB of archives. After this operation, 31.7 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0t64 amd64 2.9.2 [989 kB] Get:2 http://deb.debian.org/debian sid/main amd64 apt amd64 2.9.2 [1396 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2385 kB in 0s (33.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5200 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.9.2_amd64.deb ... Unpacking libapt-pkg6.0t64:amd64 (2.9.2) over (2.9.1) ... Setting up libapt-pkg6.0t64:amd64 (2.9.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5200 files and directories currently installed.) Preparing to unpack .../archives/apt_2.9.2_amd64.deb ... Unpacking apt (2.9.2) over (2.9.1) ... Setting up apt (2.9.2) ... Processing triggers for libc-bin (2.37-18) ... 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-get', '-yf', 'dist-upgrade'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.2s DUMP: 5e5ffeed94e287a1c014496e3a7dba00 - 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m8.2s INFO: Running scripts post_setup 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_setup_dummy_users'] 0m9.0s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_setup_dummy_users'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_setup_forbid_home'] 0m9.0s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_setup_forbid_home'] 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_setup_force-unsafe-io'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_setup_minimize'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_setup_minimize'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_setup_squeeze-backports'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_setup_zz_backports'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_setup_zz_backports'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.1s DUMP: install ok installed apt apt 2.9.2 install ok installed base-files base-files 13.1 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.40-6 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.17 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.6 install ok installed e2fsprogs e2fsprogs 1.47.0-2.4 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240330-1 install ok installed gpgv gpgv 2.2.40-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.2 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libblkid1:amd64 libblkid1 2.40-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.37-18 install ok installed libc6:amd64 libc6 2.37-18 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-1 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2.4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b3 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.0-2.4 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240330-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.5-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.9.1-2.2 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-2 install ok installed liblzma5:amd64 liblzma5 5.6.1+really5.4.5-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40-6 install ok installed libnettle8t64:amd64 libnettle8t64 3.9.1-2.2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b3 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.40-6 install ok installed libss2:amd64 libss2 1.47.0-2.4 install ok installed libssl3t64:amd64 libssl3t64 3.2.1-3 install ok installed libstdc++6:amd64 libstdc++6 14-20240330-1 install ok installed libsystemd0:amd64 libsystemd0 255.4-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240414-1 install ok installed libudev1:amd64 libudev1 255.4-1+b1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2.4 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.40-6 install ok installed ncurses-base ncurses-base 6.4+20240414-1 install ok installed ncurses-bin ncurses-bin 6.4+20240414-1 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl-base perl-base 5.38.2-3.2+b2 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.09-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-3 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40-6 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3.1 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m9.1s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/sid2experimental/reference-chroot-metadata.dat 0m9.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5'] 0m9.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5'] 0m9.5s INFO: Running scripts is_testable 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/is_testable_uninstallable'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/is_testable_uninstallable'] 0m9.5s INFO: Running scripts pre_test 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_test_exceptions'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_test_exceptions'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_test_root_password'] 0m9.6s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_test_root_password'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-cache', 'show', '--no-all-versions', 'fasta3-doc'] 0m9.9s DUMP: Package: fasta3-doc Source: fasta3 Version: 36.3.8i.14-Nov-2020-1 Installed-Size: 294 Maintainer: Debian Med Packaging Team Architecture: all Replaces: fasta3 (<< 36.3.8h) Breaks: fasta3 (<< 36.3.8h) Description-en: user guide for FASTA tools The FASTA programs find regions of local or global similarity between Protein or DNA sequences, either by searching Protein or DNA databases, or by identifying local duplications within a sequence. Other programs provide information on the statistical significance of an alignment. Like BLAST, FASTA can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families. . The use of the package's many binaries and the equally representated conceptual approaches towards sequence analyses are summarised in this PDF. Description-md5: d8363a90c1f3049dede1153f13813e53 Multi-Arch: foreign Homepage: https://fasta.bioch.virginia.edu Section: doc Priority: optional Filename: pool/main/f/fasta3/fasta3-doc_36.3.8i.14-Nov-2020-1_all.deb Size: 284712 MD5sum: e4c7c17d822d9dfb92d4b2c55a085c1a SHA256: 443aa2beffdc73f79535686f76b3eb7dabadae7f4d32aea8a6dd58a60dc2901c 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-cache', 'show', '--no-all-versions', 'fasta3-doc'] 0m9.9s INFO: apt-cache knows about the following packages: fasta3-doc 0m9.9s INFO: Running scripts pre_install 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_database-server'] 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_database-server'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_exceptions'] 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_exceptions'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_extras'] 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_extras'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-cache', 'policy'] 0m10.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-cache', 'policy'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-cache', 'policy', 'fasta3-doc'] 0m10.1s DUMP: fasta3-doc: Installed: (none) Candidate: 36.3.8i.14-Nov-2020-1 Version table: 36.3.8i.14-Nov-2020-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-cache', 'policy', 'fasta3-doc'] 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-get', '-y', 'install', 'fasta3-doc'] 0m11.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: fasta3-doc 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 285 kB of archives. After this operation, 301 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 fasta3-doc all 36.3.8i.14-Nov-2020-1 [285 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 285 kB in 0s (5756 kB/s) Selecting previously unselected package fasta3-doc. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5204 files and directories currently installed.) Preparing to unpack .../fasta3-doc_36.3.8i.14-Nov-2020-1_all.deb ... Unpacking fasta3-doc (36.3.8i.14-Nov-2020-1) ... Setting up fasta3-doc (36.3.8i.14-Nov-2020-1) ... 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-get', '-y', 'install', 'fasta3-doc'] 0m11.2s INFO: Running scripts post_install 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_install_exceptions'] 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_install_exceptions'] 0m11.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5'] 0m11.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5'] 0m11.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp77ekc8e5 to experimental 0m11.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main deb http://deb.debian.org/debian/ experimental main 0m11.6s INFO: Running scripts pre_distupgrade 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_distupgrade_exceptions'] 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_distupgrade_exceptions'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-get', 'update'] 0m13.5s DUMP: Hit:1 http://deb.debian.org/debian sid InRelease Get:2 http://deb.debian.org/debian experimental InRelease [101 kB] Get:3 http://deb.debian.org/debian experimental/main amd64 Packages [743 kB] Get:4 http://deb.debian.org/debian experimental/main Translation-en [464 kB] Fetched 1309 kB in 1s (1894 kB/s) Reading package lists... 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-get', 'update'] 0m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-get', '-yf', 'dist-upgrade'] 0m14.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-get', '-yf', 'dist-upgrade'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m14.8s DUMP: 47daf7a66ed6cb10db30547b3606b2c0 - 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-cache', 'show', '--no-all-versions', 'fasta3-doc'] 0m15.2s DUMP: Package: fasta3-doc Source: fasta3 Version: 36.3.8i.14-Nov-2020-1 Installed-Size: 294 Maintainer: Debian Med Packaging Team Architecture: all Replaces: fasta3 (<< 36.3.8h) Breaks: fasta3 (<< 36.3.8h) Description-en: user guide for FASTA tools The FASTA programs find regions of local or global similarity between Protein or DNA sequences, either by searching Protein or DNA databases, or by identifying local duplications within a sequence. Other programs provide information on the statistical significance of an alignment. Like BLAST, FASTA can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families. . The use of the package's many binaries and the equally representated conceptual approaches towards sequence analyses are summarised in this PDF. Description-md5: d8363a90c1f3049dede1153f13813e53 Multi-Arch: foreign Homepage: https://fasta.bioch.virginia.edu Section: doc Priority: optional Filename: pool/main/f/fasta3/fasta3-doc_36.3.8i.14-Nov-2020-1_all.deb Size: 284712 MD5sum: e4c7c17d822d9dfb92d4b2c55a085c1a SHA256: 443aa2beffdc73f79535686f76b3eb7dabadae7f4d32aea8a6dd58a60dc2901c 0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-cache', 'show', '--no-all-versions', 'fasta3-doc'] 0m15.2s INFO: apt-cache knows about the following packages: fasta3-doc 0m15.2s INFO: Running scripts pre_install 0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_database-server'] 0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_database-server'] 0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_exceptions'] 0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_exceptions'] 0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_extras'] 0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_extras'] 0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-cache', 'policy'] 0m15.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 1 http://deb.debian.org/debian experimental/main amd64 Packages release o=Debian,a=experimental,n=rc-buggy,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-cache', 'policy'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-cache', 'policy', 'fasta3-doc'] 0m15.3s DUMP: fasta3-doc: Installed: 36.3.8i.14-Nov-2020-1 Candidate: 36.3.8i.14-Nov-2020-1 Version table: 36.3.8i.14-Nov-2020-2~0exp0simde 1 1 http://deb.debian.org/debian experimental/main amd64 Packages *** 36.3.8i.14-Nov-2020-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-cache', 'policy', 'fasta3-doc'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-get', '-y', '-t', 'experimental', 'install', 'fasta3-doc'] 0m16.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: fasta3-doc 1 upgraded, 0 newly installed, 0 to remove and 6 not upgraded. Need to get 285 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://deb.debian.org/debian experimental/main amd64 fasta3-doc all 36.3.8i.14-Nov-2020-2~0exp0simde [285 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 285 kB in 0s (6924 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5210 files and directories currently installed.) Preparing to unpack .../fasta3-doc_36.3.8i.14-Nov-2020-2~0exp0simde_all.deb ... Unpacking fasta3-doc (36.3.8i.14-Nov-2020-2~0exp0simde) over (36.3.8i.14-Nov-2020-1) ... Setting up fasta3-doc (36.3.8i.14-Nov-2020-2~0exp0simde) ... 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-get', '-y', '-t', 'experimental', 'install', 'fasta3-doc'] 0m16.5s INFO: Running scripts post_install 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_install_exceptions'] 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_install_exceptions'] 0m16.5s INFO: Running scripts post_distupgrade 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_distupgrade_exceptions'] 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_distupgrade_exceptions'] 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_distupgrade_zz_backports'] 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_distupgrade_zz_backports'] 0m16.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5'] 0m16.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5'] 0m16.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5'] 0m17.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5'] 0m17.4s INFO: Running scripts pre_install 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_database-server'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_database-server'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_exceptions'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_exceptions'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_extras'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_extras'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-cache', 'policy'] 0m17.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 1 http://deb.debian.org/debian experimental/main amd64 Packages release o=Debian,a=experimental,n=rc-buggy,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-cache', 'policy'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-cache', 'policy', 'fasta3-doc'] 0m17.5s DUMP: fasta3-doc: Installed: 36.3.8i.14-Nov-2020-2~0exp0simde Candidate: 36.3.8i.14-Nov-2020-2~0exp0simde Version table: *** 36.3.8i.14-Nov-2020-2~0exp0simde 100 1 http://deb.debian.org/debian experimental/main amd64 Packages 100 /var/lib/dpkg/status 36.3.8i.14-Nov-2020-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-cache', 'policy', 'fasta3-doc'] 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-get', '-y', '-t', 'experimental', 'install', 'fasta3-doc=36.3.8i.14-Nov-2020-2~0exp0simde'] 0m18.2s DUMP: Reading package lists... Building dependency tree... Reading state information... fasta3-doc is already the newest version (36.3.8i.14-Nov-2020-2~0exp0simde). 0 upgraded, 0 newly installed, 0 to remove and 6 not upgraded. 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-get', '-y', '-t', 'experimental', 'install', 'fasta3-doc=36.3.8i.14-Nov-2020-2~0exp0simde'] 0m18.2s INFO: Running scripts post_install 0m18.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_install_exceptions'] 0m18.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_install_exceptions'] 0m18.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5'] 0m18.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5'] 0m18.7s INFO: /bin converted to /usr/bin by /usr merge 0m18.7s INFO: /lib converted to /usr/lib by /usr merge 0m18.7s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m18.7s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m18.7s INFO: /sbin converted to /usr/sbin by /usr merge 0m19.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', '-ac', '--ignore-obsolete'] 0m20.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', '-ac', '--ignore-obsolete'] 0m20.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m20.0s DUMP: 0.15.6 0m20.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m20.0s INFO: Running adequate version 0.15.6 now. 0m20.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'fasta3-doc'] 0m20.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'fasta3-doc'] 0m20.1s INFO: Running scripts pre_remove 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_remove_exceptions'] 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/pre_remove_exceptions'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m21.0s DUMP: install ok installed apt apt 2.9.2 install ok installed base-files base-files 13.1 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.40-6 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.17 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.6 install ok installed e2fsprogs e2fsprogs 1.47.0-2.4 install ok installed fasta3-doc fasta3-doc 36.3.8i.14-Nov-2020-2~0exp0simde install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240330-1 install ok installed gpgv gpgv 2.2.40-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.2 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libblkid1:amd64 libblkid1 2.40-6 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.37-18 install ok installed libc6:amd64 libc6 2.37-18 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-1 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2.4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b3 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.0-2.4 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240330-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.5-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.9.1-2.2 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-2 install ok installed liblzma5:amd64 liblzma5 5.6.1+really5.4.5-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40-6 install ok installed libnettle8t64:amd64 libnettle8t64 3.9.1-2.2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b3 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.40-6 install ok installed libss2:amd64 libss2 1.47.0-2.4 install ok installed libssl3t64:amd64 libssl3t64 3.2.1-3 install ok installed libstdc++6:amd64 libstdc++6 14-20240330-1 install ok installed libsystemd0:amd64 libsystemd0 255.4-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240414-1 install ok installed libudev1:amd64 libudev1 255.4-1+b1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2.4 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.40-6 install ok installed ncurses-base ncurses-base 6.4+20240414-1 install ok installed ncurses-bin ncurses-bin 6.4+20240414-1 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl-base perl-base 5.38.2-3.2+b2 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.09-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-3 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40-6 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3.1 0m21.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m21.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-get', 'remove', 'fasta3-doc'] 0m22.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: fasta3-doc 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 301 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5210 files and directories currently installed.) Removing fasta3-doc (36.3.8i.14-Nov-2020-2~0exp0simde) ... 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-get', 'remove', 'fasta3-doc'] 0m22.0s INFO: Running scripts post_remove 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_remove_exceptions'] 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_remove_exceptions'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'dpkg', '--purge', 'fasta3-doc'] 0m22.0s DUMP: dpkg: warning: ignoring request to remove fasta3-doc which isn't installed 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'dpkg', '--purge', 'fasta3-doc'] 0m22.0s INFO: Running scripts post_purge 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_purge_exceptions'] 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_purge_exceptions'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'dpkg', '--purge', '--pending'] 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'dpkg', '--purge', '--pending'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'dpkg', '--remove', '--pending'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'dpkg', '--remove', '--pending'] 0m22.1s INFO: Running scripts post_test 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_test_exceptions'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'tmp/scripts/post_test_exceptions'] 0m22.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5'] 0m22.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5'] 0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'dpkg-divert', '--list'] 0m22.5s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 local diversion of /usr/bin/sync to /usr/bin/sync.distrib 0m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'dpkg-divert', '--list'] 0m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-get', 'clean'] 0m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5', 'apt-get', 'clean'] 0m22.5s DEBUG: Recording chroot state 0m23.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5/dev/shm'] 0m23.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5/dev/shm'] 0m23.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5/dev/console'] 0m23.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5/dev/console'] 0m23.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5/dev/ptmx'] 0m23.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5/dev/ptmx'] 0m23.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5/dev/pts'] 0m23.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5/dev/pts'] 0m23.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5/proc'] 0m23.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5/proc'] 0m23.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5'] 0m23.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp77ekc8e5'] 0m23.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp77ekc8e5 0m23.8s INFO: PASS: Upgrading between Debian distributions. 0m23.8s INFO: PASS: All tests. 0m23.8s INFO: piuparts run ends. ret=0 End: 2024-04-24 20:40:36 GMT