Start: 2024-05-10 15:41:48 GMT [sid] Package: heudiconv Version: 0.11.6-1 Installed-Size: 13207 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-dcmstack, python3-filelock, python3-nibabel, python3-nipype, python3-pydicom, python3:any, dcm2niix, python3, python3-dicom, python3-numpy Recommends: python3-pytest, python3-datalad, python3-etelemetry Description: DICOM converter with support for structure heuristics Homepage: https://github.com/nipy/heudiconv Description-md5: 1c97e589188a732262069fcb46088fb7 Section: science Priority: optional Filename: pool/main/h/heudiconv/heudiconv_0.11.6-1_all.deb Size: 7609868 MD5sum: 91fffd28570bf6e053adee467a432b3f SHA256: e886b10702691e4df8c92c082f9cf90d1661965a3a55c321cb3305235f0575ab [experimental] Package: heudiconv Version: 1.1.1-1 Installed-Size: 13557 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-dcmstack, python3-filelock, python3-nibabel, python3-nipype, python3-pydicom, python3:any, dcm2niix, python3, python3-dicom, python3-inotify, python3-numpy, python3-tinydb Recommends: python3-pytest, python3-datalad, python3-etelemetry Description: DICOM converter with support for structure heuristics Homepage: https://github.com/nipy/heudiconv Description-md5: 1c97e589188a732262069fcb46088fb7 Section: science Priority: optional Filename: pool/main/h/heudiconv/heudiconv_1.1.1-1_all.deb Size: 7665036 MD5sum: 2a2afe4cd621e87d70567c937456ad83 SHA256: 02ce6123cde46286315317de97d1a2ed0cdb0357f95e1b88ab6304274380dbd7 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid -d experimental -B /srv/piuparts.debian.org/slave/refchroot/sid2experimental/reference-chroot-metadata.dat --apt heudiconv=1.1.1-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid -d experimental -B /srv/piuparts.debian.org/slave/refchroot/sid2experimental/reference-chroot-metadata.dat --apt heudiconv=1.1.1-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-29-amd64 #1 SMP Debian 5.10.216-1 (2024-05-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpepfmqkq1 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpepfmqkq1 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1/dev/ptmx'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1/dev/console'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1/dev/console'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1/dev/shm'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1/dev/shm'] 0m0.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.4s DEBUG: Created policy-rc.d and chmodded it. 0m0.4s DEBUG: Created resolv.conf. 0m0.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpepfmqkq1/tmp/scripts/ 0m0.4s INFO: Running scripts post_chroot_unpack 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-get', 'update'] 0m5.0s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9853 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7187 kB] Fetched 17.2 MB in 3s (5062 kB/s) Reading package lists... 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-get', 'update'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-get', '-yf', 'dist-upgrade'] 0m6.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: zlib1g 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 87.9 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1 [87.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 87.9 kB in 0s (2910 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5201 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.3.dfsg+really1.3.1-1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.3.dfsg+really1.3.1-1) over (1:1.3.dfsg-3.1) ... Setting up zlib1g:amd64 (1:1.3.dfsg+really1.3.1-1) ... Processing triggers for libc-bin (2.38-8) ... 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-get', '-yf', 'dist-upgrade'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.6s DUMP: 2086993ad9eb71ea5f59eec55441b11e - 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m6.6s INFO: Running scripts post_setup 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_setup_dummy_users'] 0m7.8s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_setup_dummy_users'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_setup_forbid_home'] 0m7.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_setup_forbid_home'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_setup_force-unsafe-io'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_setup_minimize'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_setup_minimize'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_setup_squeeze-backports'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_setup_zz_backports'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_setup_zz_backports'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.9s DUMP: install ok installed apt apt 2.9.2 install ok installed base-files base-files 13.2 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.40-8 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.17 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.6 install ok installed e2fsprogs e2fsprogs 1.47.1~rc2-1 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240429-1 install ok installed gpgv gpgv 2.2.40-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-2 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.2 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libblkid1:amd64 libblkid1 2.40-8 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.38-8 install ok installed libc6:amd64 libc6 2.38-8 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-1 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.1~rc2-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b3 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1~rc2-1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240429-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2+b1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.5-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3+b1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.9.1-2.2 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-2 install ok installed liblzma5:amd64 liblzma5 5.6.1+really5.4.5-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40-8 install ok installed libnettle8t64:amd64 libnettle8t64 3.9.1-2.2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-5 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b3 install ok installed libsepol2:amd64 libsepol2 3.5-2+b1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40-8 install ok installed libss2:amd64 libss2 1.47.1~rc2-1 install ok installed libssl3t64:amd64 libssl3t64 3.2.1-3 install ok installed libstdc++6:amd64 libstdc++6 14-20240429-1 install ok installed libsystemd0:amd64 libsystemd0 255.5-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.5-2 install ok installed libudev1:amd64 libudev1 255.5-1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40-8 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.1~rc2-1 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.40-8 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl-base perl-base 5.38.2-4 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.09-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-4 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40-8 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m7.9s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/sid2experimental/reference-chroot-metadata.dat 0m8.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1'] 0m8.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1'] 0m8.2s INFO: Running scripts is_testable 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/is_testable_uninstallable'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/is_testable_uninstallable'] 0m8.2s INFO: Running scripts pre_test 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_test_exceptions'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_test_exceptions'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_test_root_password'] 0m8.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_test_root_password'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-cache', 'show', '--no-all-versions', 'heudiconv'] 0m8.6s DUMP: Package: heudiconv Version: 0.11.6-1 Installed-Size: 13207 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-dcmstack, python3-filelock, python3-nibabel, python3-nipype, python3-pydicom, python3:any, dcm2niix, python3, python3-dicom, python3-numpy Recommends: python3-pytest, python3-datalad, python3-etelemetry Description-en: DICOM converter with support for structure heuristics This is a flexible dicom converter for organizing brain imaging data into structured directory layouts. It allows for flexible directory layouts and naming schemes through customizable heuristics implementations. It only converts the necessary dicoms, not everything in a directory. It tracks the provenance of the conversion from dicom to nifti in w3c prov format. Description-md5: 1c97e589188a732262069fcb46088fb7 Homepage: https://github.com/nipy/heudiconv Section: science Priority: optional Filename: pool/main/h/heudiconv/heudiconv_0.11.6-1_all.deb Size: 7609868 MD5sum: 91fffd28570bf6e053adee467a432b3f SHA256: e886b10702691e4df8c92c082f9cf90d1661965a3a55c321cb3305235f0575ab 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-cache', 'show', '--no-all-versions', 'heudiconv'] 0m8.6s INFO: apt-cache knows about the following packages: heudiconv 0m8.6s INFO: Running scripts pre_install 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_database-server'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_database-server'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_exceptions'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_exceptions'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_extras'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_extras'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_foreign_architecture'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-cache', 'policy'] 0m8.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-cache', 'policy'] 0m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-cache', 'policy', 'heudiconv'] 0m8.8s DUMP: heudiconv: Installed: (none) Candidate: 0.11.6-1 Version table: 0.11.6-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-cache', 'policy', 'heudiconv'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-get', '-y', 'install', 'heudiconv'] 1m4.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates dcm2niix libaec0 libblas3 libbrotli1 libcurl4t64 libexpat1 libgfortran5 libgomp1 libgssapi-krb5-2 libhdf5-103-1t64 libhdf5-hl-100t64 libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblzf1 libncursesw6 libnghttp2-14 libopenjp2-7 libpsl5t64 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libsz2 libturbojpeg0 libxml2 libxslt1.1 libyaml-cpp0.8 media-types netbase openssl python3 python3-certifi python3-chardet python3-charset-normalizer python3-ci-info python3-click python3-colorama python3-dateutil python3-dcmstack python3-decorator python3-deepdiff python3-dipy python3-dipy-lib python3-distutils python3-etelemetry python3-filelock python3-funcsigs python3-h5py python3-h5py-serial python3-idna python3-isodate python3-jsonpickle python3-lib2to3 python3-lxml python3-minimal python3-networkx python3-nibabel python3-nipype python3-numpy python3-ordered-set python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-prov python3-psutil python3-pydicom python3-pyparsing python3-rdflib python3-requests python3-scipy python3-setuptools python3-setuptools-scm python3-simplejson python3-six python3-tqdm python3-traits python3-trx-python python3-typing-extensions python3-tz python3-urllib3 python3.11 python3.11-minimal readline-common Suggested packages: krb5-doc krb5-user python3-doc python3-tk python3-venv python-charset-normalizer-doc python-dipy-doc python-funcsigs-doc python-h5py-doc python-jsonpickle-doc python-lxml-doc python-nibabel-doc afni python3-nipy slicer matlab-spm8 python3-pyxnat mne-python elastix ants python3-pytest-xdist python3-bids gcc gfortran python3-dev python3-pytest python-pandas-doc python3-statsmodels python-prov-doc python3-pydot python3-matplotlib python3-gdcm python-pyparsing-doc python-rdflib-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-setuptools-doc python3-brotli python3.11-venv python3.11-doc binutils binfmt-support readline-doc Recommended packages: pigz python3-pytest python3-datalad javascript-common krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules python3-clevercsv python3-matplotlib python3-vtk9 python3-tables python3-sklearn python3-bs4 python3-cssselect python3-html5lib python3-gdal python3-pydot python3-pygraphviz python3-yaml python3-fuse ipython3 graphviz python3-xvfbwrapper mayavi2 python3-pydotplus python3-cfflib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-jinja2 python3-numba python3-pil python3-sparqlwrapper g++ | c++-compiler The following NEW packages will be installed: ca-certificates dcm2niix heudiconv libaec0 libblas3 libbrotli1 libcurl4t64 libexpat1 libgfortran5 libgomp1 libgssapi-krb5-2 libhdf5-103-1t64 libhdf5-hl-100t64 libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblzf1 libncursesw6 libnghttp2-14 libopenjp2-7 libpsl5t64 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libsz2 libturbojpeg0 libxml2 libxslt1.1 libyaml-cpp0.8 media-types netbase openssl python3 python3-certifi python3-chardet python3-charset-normalizer python3-ci-info python3-click python3-colorama python3-dateutil python3-dcmstack python3-decorator python3-deepdiff python3-dipy python3-dipy-lib python3-distutils python3-etelemetry python3-filelock python3-funcsigs python3-h5py python3-h5py-serial python3-idna python3-isodate python3-jsonpickle python3-lib2to3 python3-lxml python3-minimal python3-networkx python3-nibabel python3-nipype python3-numpy python3-ordered-set python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-prov python3-psutil python3-pydicom python3-pyparsing python3-rdflib python3-requests python3-scipy python3-setuptools python3-setuptools-scm python3-simplejson python3-six python3-tqdm python3-traits python3-trx-python python3-typing-extensions python3-tz python3-urllib3 python3.11 python3.11-minimal readline-common 0 upgraded, 100 newly installed, 0 to remove and 0 not upgraded. Need to get 109 MB of archives. After this operation, 486 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:3 http://deb.debian.org/debian sid/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get:4 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get:5 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:6 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5-2 [135 kB] Get:8 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-4 [69.3 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.45.3-1 [896 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get:12 http://deb.debian.org/debian sid/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get:14 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get:15 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get:16 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libturbojpeg0 amd64 1:2.1.5-3 [210 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libyaml-cpp0.8 amd64 0.8.0+dfsg-6+b1 [132 kB] Get:20 http://deb.debian.org/debian sid/main amd64 dcm2niix amd64 1.0.20220720-1+b1 [245 kB] Get:21 http://deb.debian.org/debian sid/main amd64 python3-pydicom all 2.4.3-1 [1120 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14-20240429-1 [836 kB] Get:24 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get:25 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get:26 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.26.4+ds-8 [5466 kB] Get:27 http://deb.debian.org/debian sid/main amd64 python3-packaging all 24.0-1 [45.5 kB] Get:28 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get:29 http://deb.debian.org/debian sid/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b1 [29.1 kB] Get:30 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.11.4-6 [19.5 MB] Get:31 http://deb.debian.org/debian sid/main amd64 python3-nibabel all 5.2.1-1 [2659 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libjs-sphinxdoc all 7.2.6-6 [150 kB] Get:35 http://deb.debian.org/debian sid/main amd64 python3-dcmstack all 0.9-1 [75.8 kB] Get:36 http://deb.debian.org/debian sid/main amd64 python3-filelock all 3.14.0-1 [10.9 kB] Get:37 http://deb.debian.org/debian sid/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get:38 http://deb.debian.org/debian sid/main amd64 python3-click all 8.1.7-1 [94.0 kB] Get:39 http://deb.debian.org/debian sid/main amd64 python3-six all 1.16.0-6 [16.3 kB] Get:40 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-2 [79.4 kB] Get:41 http://deb.debian.org/debian sid/main amd64 python3-ci-info all 0.3.0-1 [7584 B] Get:42 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2023.11.17-1 [155 kB] Get:43 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get:44 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.6-2 [37.0 kB] Get:45 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 1.26.18-2 [116 kB] Get:46 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:47 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get:48 http://deb.debian.org/debian sid/main amd64 python3-etelemetry all 0.3.1-1 [7244 B] Get:49 http://deb.debian.org/debian sid/main amd64 python3-networkx all 3.2.1-4 [14.2 MB] Get:50 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libxslt1.1 amd64 1.1.35-1+b1 [232 kB] Get:53 http://deb.debian.org/debian sid/main amd64 python3-lxml amd64 5.2.1-1 [1995 kB] Get:54 http://deb.debian.org/debian sid/main amd64 python3-isodate all 0.6.1-2 [24.9 kB] Get:55 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get:56 http://deb.debian.org/debian sid/main amd64 python3-rdflib all 6.3.2-1 [395 kB] Get:57 http://deb.debian.org/debian sid/main amd64 python3-prov all 2.0.0-2 [95.6 kB] Get:58 http://deb.debian.org/debian sid/main amd64 python3-simplejson amd64 3.19.2-1+b1 [69.4 kB] Get:59 http://deb.debian.org/debian sid/main amd64 python3-traits amd64 6.4.3-1 [4823 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:64 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get:71 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b2 [215 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.7.1-5 [441 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libaec0 amd64 1.1.3-1 [23.4 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.1.3-1 [7740 B] Get:76 http://deb.debian.org/debian sid/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.3 [1241 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.3 [63.3 kB] Get:78 http://deb.debian.org/debian sid/main amd64 liblzf1 amd64 3.6-4+b1 [10.4 kB] Get:79 http://deb.debian.org/debian sid/main amd64 python3-h5py-serial amd64 3.10.0-1+b3 [1400 kB] Get:80 http://deb.debian.org/debian sid/main amd64 python3-h5py all 3.10.0-1 [14.4 kB] Get:81 http://deb.debian.org/debian sid/main amd64 python3-tqdm all 4.66.4-1 [90.8 kB] Get:82 http://deb.debian.org/debian sid/main amd64 python3-jsonpickle all 3.0.4+dfsg-1 [41.4 kB] Get:83 http://deb.debian.org/debian sid/main amd64 python3-ordered-set all 4.1.0-1 [9628 B] Get:84 http://deb.debian.org/debian sid/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get:85 http://deb.debian.org/debian sid/main amd64 python3-distutils all 3.12.3-1 [131 kB] Get:86 http://deb.debian.org/debian sid/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get:87 http://deb.debian.org/debian sid/main amd64 python3-deepdiff all 6.7.1-2 [65.6 kB] Get:88 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.10.0-1 [66.2 kB] Get:89 http://deb.debian.org/debian sid/main amd64 python3-setuptools-scm all 8.0.4-2 [39.5 kB] Get:90 http://deb.debian.org/debian sid/main amd64 python3-trx-python all 0.2.9-1 [40.2 kB] Get:91 http://deb.debian.org/debian sid/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get:92 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 2.1.4+dfsg-8 [7882 kB] Get:93 http://deb.debian.org/debian sid/main amd64 python3-pandas all 2.1.4+dfsg-8 [3015 kB] Get:94 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14-20240429-1 [136 kB] Get:95 http://deb.debian.org/debian sid/main amd64 python3-dipy-lib amd64 1.9.0-1 [3929 kB] Get:96 http://deb.debian.org/debian sid/main amd64 python3-dipy all 1.9.0-1 [3474 kB] Get:97 http://deb.debian.org/debian sid/main amd64 python3-funcsigs all 1.0.2-5 [14.0 kB] Get:98 http://deb.debian.org/debian sid/main amd64 python3-psutil amd64 5.9.8-2 [225 kB] Get:99 http://deb.debian.org/debian sid/main amd64 python3-nipype all 1.8.6-3 [1849 kB] Get:100 http://deb.debian.org/debian sid/main amd64 heudiconv all 0.11.6-1 [7610 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 109 MB in 2s (54.8 MB/s) Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5205 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5521 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../3-libncursesw6_6.5-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../6-libsqlite3-0_3.45.3-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.45.3-1) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../7-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. 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Setting up libbrotli1:amd64 (1.1.0-2+b3) ... Setting up libsqlite3-0:amd64 (3.45.3-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1) ... Setting up libnghttp2-14:amd64 (1.61.0-1+b1) ... Setting up libgomp1:amd64 (14-20240429-1) ... Setting up libturbojpeg0:amd64 (1:2.1.5-3) ... Setting up libaec0:amd64 (1.1.3-1) ... Setting up libkrb5support0:amd64 (1.20.1-6+b1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up liblzf1:amd64 (3.6-4+b1) ... Setting up libncursesw6:amd64 (6.5-2) ... Setting up libk5crypto3:amd64 (1.20.1-6+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Setting up libgfortran5:amd64 (14-20240429-1) ... Setting up libopenjp2-7:amd64 (2.5.0-2+b3) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.20.1-6+b1) ... Setting up libssh2-1t64:amd64 (1.11.0-4.1+b2) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.2.1-3) ... Setting up readline-common (8.2-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up libsz2:amd64 (1.1.3-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up liblapack3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up dcm2niix (1.0.20220720-1+b1) ... Setting up libldap-2.5-0:amd64 (2.5.17+dfsg-1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Setting up libjs-sphinxdoc (7.2.6-6) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up libxslt1.1:amd64 (1.1.35-1+b1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Setting up libcurl4t64:amd64 (8.7.1-5) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-3.3) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-3.3) ... Setting up python3.11 (3.11.9-1) ... Setting up python3 (3.11.8-1) ... Setting up python3-psutil (5.9.8-2) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-simplejson (3.19.2-1+b1) ... Setting up python3-isodate (0.6.1-2) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2023.11.17-1) ... Setting up python3-funcsigs (1.0.2-5) ... Setting up python3-idna (3.6-2) ... Setting up python3-typing-extensions (4.10.0-1) ... Setting up python3-ci-info (0.3.0-1) ... Setting up python3-urllib3 (1.26.18-2) ... Setting up python3-lxml:amd64 (5.2.1-1) ... Setting up python3-rdflib (6.3.2-1) ... Setting up python3-pydicom (2.4.3-1) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-1) ... Setting up python3-filelock (3.14.0-1) ... Setting up python3-jsonpickle (3.0.4+dfsg-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-traits (6.4.3-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-tqdm (4.66.4-1) ... Setting up python3-ordered-set (4.1.0-1) ... Setting up python3-click (8.1.7-1) ... Setting up python3-networkx (3.2.1-4) ... Setting up python3-setuptools-scm (8.0.4-2) ... Setting up python3-prov (2.0.0-2) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.31.0+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-8) ... Setting up python3-deepdiff (6.7.1-2) ... Setting up python3-scipy (1.11.4-6) ... Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-8) ... Setting up python3-h5py-serial (3.10.0-1+b3) ... Setting up python3-etelemetry (0.3.1-1) ... Setting up python3-dipy-lib:amd64 (1.9.0-1) ... Setting up python3-pandas (2.1.4+dfsg-8) ... Setting up python3-nibabel (5.2.1-1) ... Setting up python3-h5py (3.10.0-1) ... Setting up python3-trx-python (0.2.9-1) ... Setting up python3-dipy (1.9.0-1) ... Setting up python3-dcmstack (0.9-1) ... Setting up python3-nipype (1.8.6-3) ... Setting up heudiconv (0.11.6-1) ... Processing triggers for libc-bin (2.38-8) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-get', '-y', 'install', 'heudiconv'] 1m4.0s INFO: Running scripts post_install 1m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_install_exceptions'] 1m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_install_exceptions'] 1m4.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1'] 1m4.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1'] 1m4.9s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpepfmqkq1 to experimental 1m4.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main deb http://deb.debian.org/debian/ experimental main 1m4.9s INFO: Running scripts pre_distupgrade 1m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_distupgrade_exceptions'] 1m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_distupgrade_exceptions'] 1m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-get', 'update'] 1m6.9s DUMP: Hit:1 http://deb.debian.org/debian sid InRelease Get:2 http://deb.debian.org/debian experimental InRelease [101 kB] Get:3 http://deb.debian.org/debian experimental/main amd64 Packages [624 kB] Get:4 http://deb.debian.org/debian experimental/main Translation-en [408 kB] Fetched 1132 kB in 1s (1587 kB/s) Reading package lists... 1m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-get', 'update'] 1m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-get', '-yf', 'dist-upgrade'] 1m8.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-get', '-yf', 'dist-upgrade'] 1m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m8.3s DUMP: ac2df07cc1bf129257a84984f78530d2 - 1m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-cache', 'show', '--no-all-versions', 'heudiconv'] 1m8.7s DUMP: Package: heudiconv Version: 0.11.6-1 Installed-Size: 13207 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-dcmstack, python3-filelock, python3-nibabel, python3-nipype, python3-pydicom, python3:any, dcm2niix, python3, python3-dicom, python3-numpy Recommends: python3-pytest, python3-datalad, python3-etelemetry Description-en: DICOM converter with support for structure heuristics This is a flexible dicom converter for organizing brain imaging data into structured directory layouts. It allows for flexible directory layouts and naming schemes through customizable heuristics implementations. It only converts the necessary dicoms, not everything in a directory. It tracks the provenance of the conversion from dicom to nifti in w3c prov format. Description-md5: 1c97e589188a732262069fcb46088fb7 Homepage: https://github.com/nipy/heudiconv Section: science Priority: optional Filename: pool/main/h/heudiconv/heudiconv_0.11.6-1_all.deb Size: 7609868 MD5sum: 91fffd28570bf6e053adee467a432b3f SHA256: e886b10702691e4df8c92c082f9cf90d1661965a3a55c321cb3305235f0575ab 1m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-cache', 'show', '--no-all-versions', 'heudiconv'] 1m8.7s INFO: apt-cache knows about the following packages: heudiconv 1m8.7s INFO: Running scripts pre_install 1m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_database-server'] 1m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_database-server'] 1m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_exceptions'] 1m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_exceptions'] 1m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_extras'] 1m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_extras'] 1m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_foreign_architecture'] 1m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_foreign_architecture'] 1m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m8.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m8.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-cache', 'policy'] 1m8.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 1 http://deb.debian.org/debian experimental/main amd64 Packages release o=Debian,a=experimental,n=rc-buggy,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-cache', 'policy'] 1m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-cache', 'policy', 'heudiconv'] 1m8.9s DUMP: heudiconv: Installed: 0.11.6-1 Candidate: 0.11.6-1 Version table: 1.1.1-1 1 1 http://deb.debian.org/debian experimental/main amd64 Packages *** 0.11.6-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 1m8.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-cache', 'policy', 'heudiconv'] 1m8.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-get', '-y', '-t', 'experimental', 'install', 'heudiconv'] 1m12.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: python3-inotify python3-tinydb The following NEW packages will be installed: python3-inotify python3-tinydb The following packages will be upgraded: heudiconv 1 upgraded, 2 newly installed, 0 to remove and 18 not upgraded. Need to get 7696 kB of archives. After this operation, 499 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 python3-inotify all 0.2.10-5 [10.5 kB] Get:2 http://deb.debian.org/debian sid/main amd64 python3-tinydb all 3.15.2-4 [20.8 kB] Get:3 http://deb.debian.org/debian experimental/main amd64 heudiconv all 1.1.1-1 [7665 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7696 kB in 1s (15.2 MB/s) Selecting previously unselected package python3-inotify. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20561 files and directories currently installed.) Preparing to unpack .../python3-inotify_0.2.10-5_all.deb ... Unpacking python3-inotify (0.2.10-5) ... Selecting previously unselected package python3-tinydb. Preparing to unpack .../python3-tinydb_3.15.2-4_all.deb ... Unpacking python3-tinydb (3.15.2-4) ... Preparing to unpack .../heudiconv_1.1.1-1_all.deb ... Unpacking heudiconv (1.1.1-1) over (0.11.6-1) ... Setting up python3-tinydb (3.15.2-4) ... Setting up python3-inotify (0.2.10-5) ... Setting up heudiconv (1.1.1-1) ... 1m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-get', '-y', '-t', 'experimental', 'install', 'heudiconv'] 1m12.4s INFO: Running scripts post_install 1m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_install_exceptions'] 1m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_install_exceptions'] 1m12.4s INFO: Running scripts post_distupgrade 1m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_distupgrade_exceptions'] 1m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_distupgrade_exceptions'] 1m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_distupgrade_zz_backports'] 1m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_distupgrade_zz_backports'] 1m12.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1'] 1m13.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1'] 1m13.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1'] 1m14.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1'] 1m14.2s INFO: Running scripts pre_install 1m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_database-server'] 1m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_database-server'] 1m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_exceptions'] 1m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_exceptions'] 1m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_extras'] 1m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_extras'] 1m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_foreign_architecture'] 1m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_foreign_architecture'] 1m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-cache', 'policy'] 1m14.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 1 http://deb.debian.org/debian experimental/main amd64 Packages release o=Debian,a=experimental,n=rc-buggy,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-cache', 'policy'] 1m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-cache', 'policy', 'heudiconv'] 1m14.4s DUMP: heudiconv: Installed: 1.1.1-1 Candidate: 1.1.1-1 Version table: *** 1.1.1-1 100 1 http://deb.debian.org/debian experimental/main amd64 Packages 100 /var/lib/dpkg/status 0.11.6-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 1m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-cache', 'policy', 'heudiconv'] 1m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-get', '-y', '-t', 'experimental', 'install', 'heudiconv=1.1.1-1'] 1m15.3s DUMP: Reading package lists... Building dependency tree... Reading state information... heudiconv is already the newest version (1.1.1-1). 0 upgraded, 0 newly installed, 0 to remove and 18 not upgraded. 1m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-get', '-y', '-t', 'experimental', 'install', 'heudiconv=1.1.1-1'] 1m15.3s INFO: Running scripts post_install 1m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_install_exceptions'] 1m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_install_exceptions'] 1m15.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1'] 1m16.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1'] 1m16.2s INFO: /bin converted to /usr/bin by /usr merge 1m16.2s INFO: /lib converted to /usr/lib by /usr merge 1m16.2s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 1m16.2s INFO: /lib64 converted to /usr/lib64 by /usr merge 1m16.2s INFO: /sbin converted to /usr/sbin by /usr merge 1m17.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', '-ac', '--ignore-obsolete'] 1m20.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', '-ac', '--ignore-obsolete'] 1m20.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m20.7s DUMP: 0.15.6 1m20.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m20.7s INFO: Running adequate version 0.15.6 now. 1m20.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'heudiconv'] 1m20.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'heudiconv'] 1m20.8s INFO: Running scripts pre_remove 1m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m23.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 1m23.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 1m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 1m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_remove_exceptions'] 1m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/pre_remove_exceptions'] 1m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m23.4s DUMP: install ok installed apt apt 2.9.2 install ok installed base-files base-files 13.2 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.40-8 install ok installed ca-certificates ca-certificates 20240203 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-6 install ok installed dcm2niix dcm2niix 1.0.20220720-1+b1 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.17 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.6 install ok installed e2fsprogs e2fsprogs 1.47.1~rc2-1 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240429-1 install ok installed gpgv gpgv 2.2.40-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed heudiconv heudiconv 1.1.1-1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-2 install ok installed libaec0:amd64 libaec0 1.1.3-1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.2 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libblas3:amd64 libblas3 3.12.0-3 install ok installed libblkid1:amd64 libblkid1 2.40-8 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.38-8 install ok installed libc6:amd64 libc6 2.38-8 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-1 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.1~rc2-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libcurl4t64:amd64 libcurl4t64 8.7.1-5 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b3 install ok installed libexpat1:amd64 libexpat1 2.6.2-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1~rc2-1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240429-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2+b1 install ok installed libgfortran5:amd64 libgfortran5 14-20240429-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.5-2 install ok installed libgomp1:amd64 libgomp1 14-20240429-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3+b1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-6+b1 install ok installed libhdf5-103-1t64:amd64 libhdf5-103-1t64 1.10.10+repack-3.3 install ok installed libhdf5-hl-100t64:amd64 libhdf5-hl-100t64 1.10.10+repack-3.3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.9.1-2.2 install ok installed libicu72:amd64 libicu72 72.1-4+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 7.2.6-6 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-6+b1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-6+b1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-6+b1 install ok installed liblapack3:amd64 liblapack3 3.12.0-3 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1+b1 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.17+dfsg-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-2 install ok installed liblzf1:amd64 liblzf1 3.6-4+b1 install ok installed liblzma5:amd64 liblzma5 5.6.1+really5.4.5-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40-8 install ok installed libncursesw6:amd64 libncursesw6 6.5-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.9.1-2.2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.61.0-1+b1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2+b3 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-5 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.8-1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.9-1 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.9-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-4 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b4 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-6 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-6 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b3 install ok installed libsepol2:amd64 libsepol2 3.5-2+b1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40-8 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.45.3-1 install ok installed libss2:amd64 libss2 1.47.1~rc2-1 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.0-4.1+b2 install ok installed libssl3t64:amd64 libssl3t64 3.2.1-3 install ok installed libstdc++6:amd64 libstdc++6 14-20240429-1 install ok installed libsystemd0:amd64 libsystemd0 255.5-1 install ok installed libsz2:amd64 libsz2 1.1.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.5-2 install ok installed libturbojpeg0:amd64 libturbojpeg0 1:2.1.5-3 install ok installed libudev1:amd64 libudev1 255.5-1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40-8 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3+b3 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libyaml-cpp0.8:amd64 libyaml-cpp0.8 0.8.0+dfsg-6+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.1~rc2-1 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.40-8 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2 install ok installed netbase netbase 6.4 install ok installed openssl openssl 3.2.1-3 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl-base perl-base 5.38.2-4 install ok installed python3 python3 3.11.8-1 install ok installed python3-certifi python3-certifi 2023.11.17-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-1 install ok installed python3-charset-normalizer python3-charset-normalizer 3.3.2-1 install ok installed python3-ci-info python3-ci-info 0.3.0-1 install ok installed python3-click python3-click 8.1.7-1 install ok installed python3-colorama python3-colorama 0.4.6-4 install ok installed python3-dateutil python3-dateutil 2.9.0-2 install ok installed python3-dcmstack python3-dcmstack 0.9-1 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-deepdiff python3-deepdiff 6.7.1-2 install ok installed python3-dipy python3-dipy 1.9.0-1 install ok installed python3-dipy-lib:amd64 python3-dipy-lib 1.9.0-1 install ok installed python3-distutils python3-distutils 3.12.3-1 install ok installed python3-etelemetry python3-etelemetry 0.3.1-1 install ok installed python3-filelock python3-filelock 3.14.0-1 install ok installed python3-funcsigs python3-funcsigs 1.0.2-5 install ok installed python3-h5py python3-h5py 3.10.0-1 install ok installed python3-h5py-serial python3-h5py-serial 3.10.0-1+b3 install ok installed python3-idna python3-idna 3.6-2 install ok installed python3-inotify python3-inotify 0.2.10-5 install ok installed python3-isodate python3-isodate 0.6.1-2 install ok installed python3-jsonpickle python3-jsonpickle 3.0.4+dfsg-1 install ok installed python3-lib2to3 python3-lib2to3 3.12.3-1 install ok installed python3-lxml:amd64 python3-lxml 5.2.1-1 install ok installed python3-minimal python3-minimal 3.11.8-1 install ok installed python3-networkx python3-networkx 3.2.1-4 install ok installed python3-nibabel python3-nibabel 5.2.1-1 install ok installed python3-nipype python3-nipype 1.8.6-3 install ok installed python3-numpy python3-numpy 1:1.26.4+ds-8 install ok installed python3-ordered-set python3-ordered-set 4.1.0-1 install ok installed python3-packaging python3-packaging 24.0-1 install ok installed python3-pandas python3-pandas 2.1.4+dfsg-8 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.1.4+dfsg-8 install ok installed python3-pkg-resources python3-pkg-resources 68.1.2-2 install ok installed python3-prov python3-prov 2.0.0-2 install ok installed python3-psutil python3-psutil 5.9.8-2 install ok installed python3-pydicom python3-pydicom 2.4.3-1 install ok installed python3-pyparsing python3-pyparsing 3.1.2-1 install ok installed python3-rdflib python3-rdflib 6.3.2-1 install ok installed python3-requests python3-requests 2.31.0+dfsg-1 install ok installed python3-scipy python3-scipy 1.11.4-6 install ok installed python3-setuptools python3-setuptools 68.1.2-2 install ok installed python3-setuptools-scm python3-setuptools-scm 8.0.4-2 install ok installed python3-simplejson python3-simplejson 3.19.2-1+b1 install ok installed python3-six python3-six 1.16.0-6 install ok installed python3-tinydb python3-tinydb 3.15.2-4 install ok installed python3-tqdm python3-tqdm 4.66.4-1 install ok installed python3-traits python3-traits 6.4.3-1 install ok installed python3-trx-python python3-trx-python 0.2.9-1 install ok installed python3-typing-extensions python3-typing-extensions 4.10.0-1 install ok installed python3-tz python3-tz 2024.1-2 install ok installed python3-urllib3 python3-urllib3 1.26.18-2 install ok installed python3.11 python3.11 3.11.9-1 install ok installed python3.11-minimal python3.11-minimal 3.11.9-1 install ok installed readline-common readline-common 8.2-4 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.09-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-4 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40-8 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1 1m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 1m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-get', 'remove', 'ca-certificates', 'dcm2niix', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1t64:amd64', 'libhdf5-hl-100t64:amd64', 'libicu72:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libopenjp2-7:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsz2:amd64', 'libturbojpeg0:amd64', 'libxml2:amd64', 'libxslt1.1:amd64', 'libyaml-cpp0.8:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-ci-info', 'python3-click', 'python3-colorama', 'python3-dateutil', 'python3-dcmstack', 'python3-decorator', 'python3-deepdiff', 'python3-dipy', 'python3-dipy-lib:amd64', 'python3-distutils', 'python3-etelemetry', 'python3-filelock', 'python3-funcsigs', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-inotify', 'python3-isodate', 'python3-jsonpickle', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-minimal', 'python3-networkx', 'python3-nibabel', 'python3-nipype', 'python3-numpy', 'python3-ordered-set', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pydicom', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-scipy', 'python3-setuptools', 'python3-setuptools-scm', 'python3-simplejson', 'python3-six', 'python3-tinydb', 'python3-tqdm', 'python3-traits', 'python3-trx-python', 'python3-typing-extensions', 'python3-tz', 'python3-urllib3', 'python3.11', 'python3.11-minimal', 'readline-common', 'heudiconv'] 1m33.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates dcm2niix heudiconv libaec0 libblas3 libbrotli1 libcurl4t64 libexpat1 libgfortran5 libgomp1 libgssapi-krb5-2 libhdf5-103-1t64 libhdf5-hl-100t64 libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblzf1 libncursesw6 libnghttp2-14 libopenjp2-7 libpsl5t64 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1t64 libsz2 libturbojpeg0 libxml2 libxslt1.1 libyaml-cpp0.8 media-types netbase openssl python3 python3-certifi python3-chardet python3-charset-normalizer python3-ci-info python3-click python3-colorama python3-dateutil python3-dcmstack python3-decorator python3-deepdiff python3-dipy python3-dipy-lib python3-distutils python3-etelemetry python3-filelock python3-funcsigs python3-h5py python3-h5py-serial python3-idna python3-inotify python3-isodate python3-jsonpickle python3-lib2to3 python3-lxml python3-minimal python3-networkx python3-nibabel python3-nipype python3-numpy python3-ordered-set python3-packaging python3-pandas python3-pandas-lib python3-pkg-resources python3-prov python3-psutil python3-pydicom python3-pyparsing python3-rdflib python3-requests python3-scipy python3-setuptools python3-setuptools-scm python3-simplejson python3-six python3-tinydb python3-tqdm python3-traits python3-trx-python python3-typing-extensions python3-tz python3-urllib3 python3.11 python3.11-minimal readline-common 0 upgraded, 0 newly installed, 102 to remove and 0 not upgraded. After this operation, 487 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20599 files and directories currently installed.) Removing heudiconv (1.1.1-1) ... Removing python3-nipype (1.8.6-3) ... Removing python3-etelemetry (0.3.1-1) ... Removing python3-requests (2.31.0+dfsg-1) ... Removing python3-certifi (2023.11.17-1) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing dcm2niix (1.0.20220720-1+b1) ... Removing python3-dipy (1.9.0-1) ... Removing python3-h5py (3.10.0-1) ... Removing python3-h5py-serial (3.10.0-1+b3) ... Removing libhdf5-hl-100t64:amd64 (1.10.10+repack-3.3) ... Removing libhdf5-103-1t64:amd64 (1.10.10+repack-3.3) ... Removing libsz2:amd64 (1.1.3-1) ... Removing libaec0:amd64 (1.1.3-1) ... Removing python3-dcmstack (0.9-1) ... Removing python3-trx-python (0.2.9-1) ... Removing python3-nibabel (5.2.1-1) ... Removing python3-scipy (1.11.4-6) ... Removing python3-pandas (2.1.4+dfsg-8) ... Removing python3-pandas-lib:amd64 (2.1.4+dfsg-8) ... Removing python3-dipy-lib:amd64 (1.9.0-1) ... Removing python3-deepdiff (6.7.1-2) ... Removing python3-numpy (1:1.26.4+ds-8) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Removing liblapack3:amd64 (3.12.0-3) ... Removing libblas3:amd64 (3.12.0-3) ... Removing libcurl4t64:amd64 (8.7.1-5) ... Removing libbrotli1:amd64 (1.1.0-2+b3) ... Removing python3-simplejson (3.19.2-1+b1) ... Removing python3-setuptools-scm (8.0.4-2) ... Removing python3-setuptools (68.1.2-2) ... Removing python3-distutils (3.12.3-1) ... Removing python3-click (8.1.7-1) ... Removing python3-traits (6.4.3-1) ... Removing python3-urllib3 (1.26.18-2) ... Removing python3-jsonpickle (3.0.4+dfsg-1) ... Removing libgfortran5:amd64 (14-20240429-1) ... Removing libgomp1:amd64 (14-20240429-1) ... Removing libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Removing python3-prov (2.0.0-2) ... Removing python3-lxml:amd64 (5.2.1-1) ... Removing libxslt1.1:amd64 (1.1.35-1+b1) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Removing libicu72:amd64 (72.1-4+b1) ... Removing libjs-sphinxdoc (7.2.6-6) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Removing libkrb5-3:amd64 (1.20.1-6+b1) ... Removing libk5crypto3:amd64 (1.20.1-6+b1) ... Removing libkeyutils1:amd64 (1.6.3-3) ... Removing libkrb5support0:amd64 (1.20.1-6+b1) ... Removing libldap-2.5-0:amd64 (2.5.17+dfsg-1) ... Removing liblzf1:amd64 (3.6-4+b1) ... Removing libnghttp2-14:amd64 (1.61.0-1+b1) ... Removing libopenjp2-7:amd64 (2.5.0-2+b3) ... Removing libpsl5t64:amd64 (0.21.2-1.1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Removing libssh2-1t64:amd64 (1.11.0-4.1+b2) ... Removing libturbojpeg0:amd64 (1:2.1.5-3) ... Removing libyaml-cpp0.8:amd64 (0.8.0+dfsg-6+b1) ... Removing openssl (3.2.1-3) ... Removing python3-chardet (5.2.0+dfsg-1) ... Removing python3-charset-normalizer (3.3.2-1) ... Removing python3-ci-info (0.3.0-1) ... Removing python3-colorama (0.4.6-4) ... Removing python3-dateutil (2.9.0-2) ... Removing python3-decorator (5.1.1-5) ... Removing python3-filelock (3.14.0-1) ... Removing python3-funcsigs (1.0.2-5) ... Removing python3-idna (3.6-2) ... Removing python3-inotify (0.2.10-5) ... Removing python3-rdflib (6.3.2-1) ... Removing python3-isodate (0.6.1-2) ... Removing python3-lib2to3 (3.12.3-1) ... Removing python3-networkx (3.2.1-4) ... Removing python3-ordered-set (4.1.0-1) ... Removing python3-packaging (24.0-1) ... Removing python3-pkg-resources (68.1.2-2) ... Removing python3-psutil (5.9.8-2) ... Removing python3-pydicom (2.4.3-1) ... Removing python3-pyparsing (3.1.2-1) ... Removing python3-six (1.16.0-6) ... Removing python3-tinydb (3.15.2-4) ... Removing python3-tqdm (4.66.4-1) ... Removing python3-typing-extensions (4.10.0-1) ... Removing python3-tz (2024.1-2) ... Removing python3 (3.11.8-1) ... Removing python3.11 (3.11.9-1) ... Removing python3-minimal (3.11.8-1) ... Removing python3.11-minimal (3.11.9-1) ... Removing libexpat1:amd64 (2.6.2-1) ... Removing libpython3-stdlib:amd64 (3.11.8-1) ... Removing libpython3.11-stdlib:amd64 (3.11.9-1) ... find: '/usr/lib/python3': No such file or directory Removing libsqlite3-0:amd64 (3.45.3-1) ... Removing libncursesw6:amd64 (6.5-2) ... Removing libpython3.11-minimal:amd64 (3.11.9-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-4) ... Processing triggers for libc-bin (2.38-8) ... 1m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-get', 'remove', 'ca-certificates', 'dcm2niix', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1t64:amd64', 'libhdf5-hl-100t64:amd64', 'libicu72:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libopenjp2-7:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsz2:amd64', 'libturbojpeg0:amd64', 'libxml2:amd64', 'libxslt1.1:amd64', 'libyaml-cpp0.8:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-ci-info', 'python3-click', 'python3-colorama', 'python3-dateutil', 'python3-dcmstack', 'python3-decorator', 'python3-deepdiff', 'python3-dipy', 'python3-dipy-lib:amd64', 'python3-distutils', 'python3-etelemetry', 'python3-filelock', 'python3-funcsigs', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-inotify', 'python3-isodate', 'python3-jsonpickle', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-minimal', 'python3-networkx', 'python3-nibabel', 'python3-nipype', 'python3-numpy', 'python3-ordered-set', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pydicom', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-scipy', 'python3-setuptools', 'python3-setuptools-scm', 'python3-simplejson', 'python3-six', 'python3-tinydb', 'python3-tqdm', 'python3-traits', 'python3-trx-python', 'python3-typing-extensions', 'python3-tz', 'python3-urllib3', 'python3.11', 'python3.11-minimal', 'readline-common', 'heudiconv'] 1m33.9s INFO: Running scripts post_remove 1m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_remove_exceptions'] 1m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_remove_exceptions'] 1m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'dpkg', '--purge', 'ca-certificates', 'dcm2niix', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1t64:amd64', 'libhdf5-hl-100t64:amd64', 'libicu72:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libopenjp2-7:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsz2:amd64', 'libturbojpeg0:amd64', 'libxml2:amd64', 'libxslt1.1:amd64', 'libyaml-cpp0.8:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-ci-info', 'python3-click', 'python3-colorama', 'python3-dateutil', 'python3-dcmstack', 'python3-decorator', 'python3-deepdiff', 'python3-dipy', 'python3-dipy-lib:amd64', 'python3-distutils', 'python3-etelemetry', 'python3-filelock', 'python3-funcsigs', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-inotify', 'python3-isodate', 'python3-jsonpickle', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-minimal', 'python3-networkx', 'python3-nibabel', 'python3-nipype', 'python3-numpy', 'python3-ordered-set', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pydicom', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-scipy', 'python3-setuptools', 'python3-setuptools-scm', 'python3-simplejson', 'python3-six', 'python3-tinydb', 'python3-tqdm', 'python3-traits', 'python3-trx-python', 'python3-typing-extensions', 'python3-tz', 'python3-urllib3', 'python3.11', 'python3.11-minimal', 'readline-common'] 1m34.1s DUMP: (Reading database ... 5215 files and directories currently installed.) Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove dcm2niix which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcurl4t64 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... dpkg: warning: ignoring request to remove libhdf5-103-1t64 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-100t64 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblzf1 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.9-1) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-4) ... dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libturbojpeg0 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libyaml-cpp0.8 which isn't installed Purging configuration files for media-types (10.1.0) ... Purging configuration files for netbase (6.4) ... Purging configuration files for openssl (3.2.1-3) ... Purging configuration files for python3 (3.11.8-1) ... dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-ci-info which isn't installed dpkg: warning: ignoring request to remove python3-click which isn't installed dpkg: warning: ignoring request to remove python3-colorama which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-dcmstack which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-deepdiff which isn't installed dpkg: warning: ignoring request to remove python3-dipy which isn't installed dpkg: warning: ignoring request to remove python3-dipy-lib which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-etelemetry which isn't installed dpkg: warning: ignoring request to remove python3-filelock which isn't installed dpkg: warning: ignoring request to remove python3-funcsigs which isn't installed dpkg: warning: ignoring request to remove python3-h5py which isn't installed dpkg: warning: ignoring request to remove python3-h5py-serial which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-inotify which isn't installed dpkg: warning: ignoring request to remove python3-isodate which isn't installed dpkg: warning: ignoring request to remove python3-jsonpickle which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed dpkg: warning: ignoring request to remove python3-nibabel which isn't installed dpkg: warning: ignoring request to remove python3-nipype which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-ordered-set which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-prov which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed dpkg: warning: ignoring request to remove python3-pydicom which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-rdflib which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-setuptools-scm which isn't installed dpkg: warning: ignoring request to remove python3-simplejson which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-tinydb which isn't installed dpkg: warning: ignoring request to remove python3-tqdm which isn't installed dpkg: warning: ignoring request to remove python3-traits which isn't installed dpkg: warning: ignoring request to remove python3-trx-python which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed Purging configuration files for python3.11-minimal (3.11.9-1) ... Purging configuration files for readline-common (8.2-4) ... 1m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'dpkg', '--purge', 'ca-certificates', 'dcm2niix', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl4t64:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1t64:amd64', 'libhdf5-hl-100t64:amd64', 'libicu72:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblzf1:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libopenjp2-7:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libsz2:amd64', 'libturbojpeg0:amd64', 'libxml2:amd64', 'libxslt1.1:amd64', 'libyaml-cpp0.8:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-ci-info', 'python3-click', 'python3-colorama', 'python3-dateutil', 'python3-dcmstack', 'python3-decorator', 'python3-deepdiff', 'python3-dipy', 'python3-dipy-lib:amd64', 'python3-distutils', 'python3-etelemetry', 'python3-filelock', 'python3-funcsigs', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-inotify', 'python3-isodate', 'python3-jsonpickle', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-minimal', 'python3-networkx', 'python3-nibabel', 'python3-nipype', 'python3-numpy', 'python3-ordered-set', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pkg-resources', 'python3-prov', 'python3-psutil', 'python3-pydicom', 'python3-pyparsing', 'python3-rdflib', 'python3-requests', 'python3-scipy', 'python3-setuptools', 'python3-setuptools-scm', 'python3-simplejson', 'python3-six', 'python3-tinydb', 'python3-tqdm', 'python3-traits', 'python3-trx-python', 'python3-typing-extensions', 'python3-tz', 'python3-urllib3', 'python3.11', 'python3.11-minimal', 'readline-common'] 1m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'dpkg', '--purge', 'heudiconv'] 1m34.1s DUMP: dpkg: warning: ignoring request to remove heudiconv which isn't installed 1m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'dpkg', '--purge', 'heudiconv'] 1m34.1s INFO: Running scripts post_purge 1m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_purge_exceptions'] 1m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_purge_exceptions'] 1m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'dpkg', '--purge', '--pending'] 1m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'dpkg', '--purge', '--pending'] 1m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'dpkg', '--remove', '--pending'] 1m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'dpkg', '--remove', '--pending'] 1m34.1s INFO: Running scripts post_test 1m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_test_exceptions'] 1m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'tmp/scripts/post_test_exceptions'] 1m34.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1'] 1m34.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1'] 1m34.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'dpkg-divert', '--list'] 1m34.4s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 local diversion of /usr/bin/sync to /usr/bin/sync.distrib 1m34.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'dpkg-divert', '--list'] 1m34.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-get', 'clean'] 1m34.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1', 'apt-get', 'clean'] 1m34.4s DEBUG: Recording chroot state 1m35.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1/dev/shm'] 1m35.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1/dev/shm'] 1m35.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1/dev/console'] 1m35.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1/dev/console'] 1m35.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1/dev/ptmx'] 1m35.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1/dev/ptmx'] 1m35.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1/dev/pts'] 1m35.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1/dev/pts'] 1m35.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1/proc'] 1m35.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1/proc'] 1m35.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1'] 1m35.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpepfmqkq1'] 1m35.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpepfmqkq1 1m35.4s INFO: PASS: Upgrading between Debian distributions. 1m35.4s INFO: PASS: All tests. 1m35.4s INFO: piuparts run ends. ret=0 End: 2024-05-10 15:43:24 GMT