Start: 2024-12-12 21:16:32 GMT

[sid]
Package: libncbi-wvdb3
Source: ncbi-vdb
Version: 3.0.9+dfsg-2
Installed-Size: 3526
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: amd64
Depends: libbz2-1.0, libc6 (>= 2.38), libmbedcrypto16 (>= 3.6.0), libmbedtls21 (>= 3.6.0), libmbedx509-7 (>= 3.6.0), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.2.2), ncbi-vdb-data (>= 3.0.9+dfsg-2)
Description: virtual layer update module of ncbi-vdb library
Multi-Arch: same
Homepage: https://github.com/ncbi/ncbi-vdb
Description-md5: 8a7b8bf0ce8fc54e15a4863648ce9ebb
Tag: role::shared-lib
Section: libs
Priority: optional
Filename: pool/main/n/ncbi-vdb/libncbi-wvdb3_3.0.9+dfsg-2_amd64.deb
Size: 1191060
MD5sum: 79bf5cea4c76a57f0f57c32615e5c3c0
SHA256: 0f8dd6f844753fba5bc949e3789729087b815dd3da1d9b83fe53bc904308b7b0

[experimental]
Package: libncbi-wvdb3
Source: ncbi-vdb
Version: 3.1.1+dfsg-1
Installed-Size: 3527
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: amd64
Depends: libbz2-1.0, libc6 (>= 2.38), libmbedcrypto16 (>= 3.6.0), libmbedtls21 (>= 3.6.0), libmbedx509-7 (>= 3.6.0), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.2.2), ncbi-vdb-data (>= 3.1.1+dfsg-1)
Description: virtual layer update module of ncbi-vdb library
Multi-Arch: same
Homepage: https://github.com/ncbi/ncbi-vdb
Description-md5: 8a7b8bf0ce8fc54e15a4863648ce9ebb
Tag: role::shared-lib
Section: libs
Priority: optional
Filename: pool/main/n/ncbi-vdb/libncbi-wvdb3_3.1.1+dfsg-1_amd64.deb
Size: 1193112
MD5sum: d219a092bf104689b9c188477df1cab3
SHA256: 94b31d4c448f4c74f48164eb327fcc556178e368f8771aeca45f5b486d705ec7

Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid -d experimental -B /srv/piuparts.debian.org/slave/refchroot/sid2experimental/reference-chroot-metadata.dat --apt libncbi-wvdb3=3.1.1+dfsg-1
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile.
0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ
0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong.
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: piuparts version 1.4.5~202409272043~1.4.4-4-gf0f1b5e8 starting up.
0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid -d experimental -B /srv/piuparts.debian.org/slave/refchroot/sid2experimental/reference-chroot-metadata.dat --apt libncbi-wvdb3=3.1.1+dfsg-1
0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-33-amd64 #1 SMP Debian 5.10.226-1 (2024-10-03) x86_64
0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp6omwwc7c
0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp6omwwc7c
0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz']
0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz']
0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c/proc']
0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c/proc']
0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c/dev/pts']
0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c/dev/pts']
0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c/dev/ptmx']
0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c/dev/ptmx']
0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c/dev/console']
0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c/dev/console']
0m0.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c/dev/shm']
0m0.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c/dev/shm']
0m0.2s DEBUG: sources.list:
  deb http://deb.debian.org/debian/ sid main
0m0.2s DEBUG: Created policy-rc.d and chmodded it.
0m0.2s DEBUG: Created resolv.conf.
0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp6omwwc7c/tmp/scripts/
0m0.2s INFO: Running scripts post_chroot_unpack
0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated']
0m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated']
0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-get', 'update']
0m2.1s DUMP: 
  Get:1 http://deb.debian.org/debian sid InRelease [202 kB]
  Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.1 MB]
  Get:3 http://deb.debian.org/debian sid/main Translation-en [7347 kB]
  Fetched 17.6 MB in 1s (12.6 MB/s)
  Reading package lists...
0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-get', 'update']
0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-get', '-yf', 'dist-upgrade']
0m2.4s DUMP: 
  Reading package lists...
  Building dependency tree...
  Calculating upgrade...
  0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-get', '-yf', 'dist-upgrade']
0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m2.6s DUMP: 
  85906129c7e87bf2923e417b959ac608  -
0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m2.6s INFO: Running scripts post_setup
0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_setup_dummy_users']
0m3.0s DUMP: 
  useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999
  useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999
  useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999
  useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999
  useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999
  useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999
  useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999
  useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999
  useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999
  useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999
  useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999
0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_setup_dummy_users']
0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_setup_forbid_home']
0m3.0s DUMP: 
  Disabling /home
  Adding 'local diversion of /home to /home.distrib'
0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_setup_forbid_home']
0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_setup_force-unsafe-io']
0m3.0s DUMP: 
  Enabling dpkg --force-unsafe-io.
  Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib'
  Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged'
  '/bin/sync' -> 'true'
0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_setup_force-unsafe-io']
0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_setup_minimize']
0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_setup_minimize']
0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_setup_squeeze-backports']
0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_setup_squeeze-backports']
0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_setup_zz_backports']
0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_setup_zz_backports']
0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m3.0s DUMP: 
  install ok installed	apt	apt	2.9.17
  install ok installed	base-files	base-files	13.6
  install ok installed	base-passwd	base-passwd	3.6.5
  install ok installed	bash	bash	5.2.37-1
  install ok installed	bsdutils	bsdutils	1:2.40.2-12
  install ok installed	coreutils	coreutils	9.5-1+b1
  install ok installed	dash	dash	0.5.12-9
  install ok installed	debconf	debconf	1.5.87
  install ok installed	debian-archive-keyring	debian-archive-keyring	2023.4
  install ok installed	debianutils	debianutils	5.21
  install ok installed	diffutils	diffutils	1:3.10-1
  install ok installed	dpkg	dpkg	1.22.11
  install ok installed	e2fsprogs	e2fsprogs	1.47.2~rc1-2
  install ok installed	findutils	findutils	4.10.0-3
  install ok installed	gcc-14-base:amd64	gcc-14-base	14.2.0-8
  install ok installed	gpgv	gpgv	2.2.45-2
  install ok installed	grep	grep	3.11-4
  install ok installed	gzip	gzip	1.12-1.2
  install ok installed	hostname	hostname	3.25
  install ok installed	init-system-helpers	init-system-helpers	1.67
  install ok installed	libacl1:amd64	libacl1	2.3.2-2+b1
  install ok installed	libapt-pkg6.0t64:amd64	libapt-pkg6.0t64	2.9.17
  install ok installed	libattr1:amd64	libattr1	1:2.5.2-2
  install ok installed	libaudit-common	libaudit-common	1:4.0.2-2
  install ok installed	libaudit1:amd64	libaudit1	1:4.0.2-2
  install ok installed	libblkid1:amd64	libblkid1	2.40.2-12
  install ok installed	libbsd0:amd64	libbsd0	0.12.2-2
  install ok installed	libbz2-1.0:amd64	libbz2-1.0	1.0.8-6
  install ok installed	libc-bin	libc-bin	2.40-4
  install ok installed	libc6:amd64	libc6	2.40-4
  install ok installed	libcap-ng0:amd64	libcap-ng0	0.8.5-4
  install ok installed	libcap2:amd64	libcap2	1:2.66-5+b1
  install ok installed	libcom-err2:amd64	libcom-err2	1.47.2~rc1-2
  install ok installed	libcrypt1:amd64	libcrypt1	1:4.4.36-5
  install ok installed	libdb5.3t64:amd64	libdb5.3t64	5.3.28+dfsg2-9
  install ok installed	libdebconfclient0:amd64	libdebconfclient0	0.274
  install ok installed	libext2fs2t64:amd64	libext2fs2t64	1.47.2~rc1-2
  install ok installed	libffi8:amd64	libffi8	3.4.6-1
  install ok installed	libgcc-s1:amd64	libgcc-s1	14.2.0-8
  install ok installed	libgcrypt20:amd64	libgcrypt20	1.11.0-6
  install ok installed	libgmp10:amd64	libgmp10	2:6.3.0+dfsg-3
  install ok installed	libgnutls30t64:amd64	libgnutls30t64	3.8.8-2
  install ok installed	libgpg-error0:amd64	libgpg-error0	1.51-2
  install ok installed	libhogweed6t64:amd64	libhogweed6t64	3.10-1+b1
  install ok installed	libidn2-0:amd64	libidn2-0	2.3.7-2+b1
  install ok installed	liblz4-1:amd64	liblz4-1	1.9.4-3+b1
  install ok installed	liblzma5:amd64	liblzma5	5.6.3-1+b1
  install ok installed	libmd0:amd64	libmd0	1.1.0-2+b1
  install ok installed	libmount1:amd64	libmount1	2.40.2-12
  install ok installed	libnettle8t64:amd64	libnettle8t64	3.10-1+b1
  install ok installed	libp11-kit0:amd64	libp11-kit0	0.25.5-2+b1
  install ok installed	libpam-modules:amd64	libpam-modules	1.5.3-7+b1
  install ok installed	libpam-modules-bin	libpam-modules-bin	1.5.3-7+b1
  install ok installed	libpam-runtime	libpam-runtime	1.5.3-7
  install ok installed	libpam0g:amd64	libpam0g	1.5.3-7+b1
  install ok installed	libpcre2-8-0:amd64	libpcre2-8-0	10.44-5
  install ok installed	libseccomp2:amd64	libseccomp2	2.5.5-2
  install ok installed	libselinux1:amd64	libselinux1	3.7-3+b1
  install ok installed	libsemanage-common	libsemanage-common	3.7-2
  install ok installed	libsemanage2:amd64	libsemanage2	3.7-2+b1
  install ok installed	libsepol2:amd64	libsepol2	3.7-1
  install ok installed	libsmartcols1:amd64	libsmartcols1	2.40.2-12
  install ok installed	libss2:amd64	libss2	1.47.2~rc1-2
  install ok installed	libssl3t64:amd64	libssl3t64	3.3.2-2
  install ok installed	libstdc++6:amd64	libstdc++6	14.2.0-8
  install ok installed	libsystemd0:amd64	libsystemd0	257-2
  install ok installed	libtasn1-6:amd64	libtasn1-6	4.19.0-3+b3
  install ok installed	libtinfo6:amd64	libtinfo6	6.5-2+b1
  install ok installed	libudev1:amd64	libudev1	257-2
  install ok installed	libunistring5:amd64	libunistring5	1.3-1
  install ok installed	libuuid1:amd64	libuuid1	2.40.2-12
  install ok installed	libxxhash0:amd64	libxxhash0	0.8.2-2+b2
  install ok installed	libzstd1:amd64	libzstd1	1.5.6+dfsg-1+b1
  install ok installed	login	login	1:4.16.0-2+really2.40.2-12
  install ok installed	login.defs	login.defs	1:4.16.0-7
  install ok installed	logsave	logsave	1.47.2~rc1-2
  install ok installed	mawk	mawk	1.3.4.20240905-1
  install ok installed	mount	mount	2.40.2-12
  install ok installed	ncurses-base	ncurses-base	6.5-2
  install ok installed	ncurses-bin	ncurses-bin	6.5-2+b1
  install ok installed	openssl-provider-legacy	openssl-provider-legacy	3.3.2-2
  install ok installed	passwd	passwd	1:4.16.0-7
  install ok installed	perl-base	perl-base	5.40.0-8
  install ok installed	sed	sed	4.9-2
  install ok installed	sysvinit-utils	sysvinit-utils	3.11-1
  install ok installed	tar	tar	1.35+dfsg-3
  install ok installed	tzdata	tzdata	2024b-4
  install ok installed	usr-is-merged	usr-is-merged	39
  install ok installed	util-linux	util-linux	2.40.2-12
  install ok installed	zlib1g:amd64	zlib1g	1:1.3.dfsg+really1.3.1-1+b1
0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m3.0s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/sid2experimental/reference-chroot-metadata.dat
0m3.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c']
0m3.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c']
0m3.2s INFO: Running scripts is_testable
0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/is_testable_uninstallable']
0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/is_testable_uninstallable']
0m3.2s INFO: Running scripts pre_test
0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_test_exceptions']
0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_test_exceptions']
0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_test_root_password']
0m3.2s DUMP: 
  New password: Retype new password: passwd: password updated successfully
0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_test_root_password']
0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-cache', 'show', '--no-all-versions', 'libncbi-wvdb3']
0m3.3s DUMP: 
  Package: libncbi-wvdb3
  Source: ncbi-vdb
  Version: 3.0.9+dfsg-2
  Installed-Size: 3526
  Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
  Architecture: amd64
  Depends: libbz2-1.0, libc6 (>= 2.38), libmbedcrypto16 (>= 3.6.0), libmbedtls21 (>= 3.6.0), libmbedx509-7 (>= 3.6.0), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.2.2), ncbi-vdb-data (>= 3.0.9+dfsg-2)
  Description-en: virtual layer update module of ncbi-vdb library
   The (US) National Center for Biotechnology Information (NCBI)'s
   Virtual/Vertical Database (VDB) is a highly compressed column-oriented
   data warehousing technology developed initially to address the needs
   of the Sequence Read Archive (SRA). It is unique in that it builds
   databases from smaller parts that can function independently as
   _documents_, supports effective and efficient compression, supports
   encryption while remaining encrypted on disk, transparent distribution
   and remote access.
   .
   This package contains a runtime library for updating VDB data.
  Description-md5: 8a7b8bf0ce8fc54e15a4863648ce9ebb
  Multi-Arch: same
  Homepage: https://github.com/ncbi/ncbi-vdb
  Tag: role::shared-lib
  Section: libs
  Priority: optional
  Filename: pool/main/n/ncbi-vdb/libncbi-wvdb3_3.0.9+dfsg-2_amd64.deb
  Size: 1191060
  MD5sum: 79bf5cea4c76a57f0f57c32615e5c3c0
  SHA256: 0f8dd6f844753fba5bc949e3789729087b815dd3da1d9b83fe53bc904308b7b0
0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-cache', 'show', '--no-all-versions', 'libncbi-wvdb3']
0m3.3s INFO: apt-cache knows about the following packages: libncbi-wvdb3
0m3.3s INFO: Running scripts pre_install
0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_database-server']
0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_database-server']
0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_exceptions']
0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_exceptions']
0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_extras']
0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_extras']
0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_foreign_architecture']
0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_foreign_architecture']
0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-cache', 'policy']
0m3.4s DUMP: 
  Package files:
   100 /var/lib/dpkg/status
       release a=now
   500 http://deb.debian.org/debian sid/main amd64 Packages
       release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64
       origin deb.debian.org
  Pinned packages:
0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-cache', 'policy']
0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-cache', 'policy', 'libncbi-wvdb3']
0m3.4s DUMP: 
  libncbi-wvdb3:
    Installed: (none)
    Candidate: 3.0.9+dfsg-2
    Version table:
       3.0.9+dfsg-2 500
          500 http://deb.debian.org/debian sid/main amd64 Packages
0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-cache', 'policy', 'libncbi-wvdb3']
0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-get', '-y', 'install', 'libncbi-wvdb3']
0m4.7s DUMP: 
  Reading package lists...
  Building dependency tree...
  The following additional packages will be installed:
    libmbedcrypto16 libmbedtls21 libmbedx509-7 ncbi-vdb-data
  The following NEW packages will be installed:
    libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-wvdb3 ncbi-vdb-data
  0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded.
  Need to get 2001 kB of archives.
  After this operation, 5491 kB of additional disk space will be used.
  Get:1 http://deb.debian.org/debian sid/main amd64 libmbedcrypto16 amd64 3.6.2-3 [355 kB]
  Get:2 http://deb.debian.org/debian sid/main amd64 libmbedx509-7 amd64 3.6.2-3 [147 kB]
  Get:3 http://deb.debian.org/debian sid/main amd64 libmbedtls21 amd64 3.6.2-3 [234 kB]
  Get:4 http://deb.debian.org/debian sid/main amd64 ncbi-vdb-data all 3.0.9+dfsg-2 [74.0 kB]
  Get:5 http://deb.debian.org/debian sid/main amd64 libncbi-wvdb3 amd64 3.0.9+dfsg-2 [1191 kB]
  debconf: delaying package configuration, since apt-utils is not installed
  Fetched 2001 kB in 1s (2392 kB/s)
  Selecting previously unselected package libmbedcrypto16:amd64.
  (Reading database ... 
  (Reading database ... 5%
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  (Reading database ... 80%
  (Reading database ... 85%
  (Reading database ... 90%
  (Reading database ... 95%
  (Reading database ... 100%
  (Reading database ... 5135 files and directories currently installed.)
  Preparing to unpack .../libmbedcrypto16_3.6.2-3_amd64.deb ...
  Unpacking libmbedcrypto16:amd64 (3.6.2-3) ...
  Selecting previously unselected package libmbedx509-7:amd64.
  Preparing to unpack .../libmbedx509-7_3.6.2-3_amd64.deb ...
  Unpacking libmbedx509-7:amd64 (3.6.2-3) ...
  Selecting previously unselected package libmbedtls21:amd64.
  Preparing to unpack .../libmbedtls21_3.6.2-3_amd64.deb ...
  Unpacking libmbedtls21:amd64 (3.6.2-3) ...
  Selecting previously unselected package ncbi-vdb-data.
  Preparing to unpack .../ncbi-vdb-data_3.0.9+dfsg-2_all.deb ...
  Unpacking ncbi-vdb-data (3.0.9+dfsg-2) ...
  Selecting previously unselected package libncbi-wvdb3:amd64.
  Preparing to unpack .../libncbi-wvdb3_3.0.9+dfsg-2_amd64.deb ...
  Unpacking libncbi-wvdb3:amd64 (3.0.9+dfsg-2) ...
  Setting up ncbi-vdb-data (3.0.9+dfsg-2) ...
  Setting up libmbedcrypto16:amd64 (3.6.2-3) ...
  Setting up libmbedx509-7:amd64 (3.6.2-3) ...
  Setting up libmbedtls21:amd64 (3.6.2-3) ...
  Setting up libncbi-wvdb3:amd64 (3.0.9+dfsg-2) ...
  Processing triggers for libc-bin (2.40-4) ...
0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-get', '-y', 'install', 'libncbi-wvdb3']
0m4.7s INFO: Running scripts post_install
0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_install_exceptions']
0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_install_exceptions']
0m4.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c']
0m4.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c']
0m4.9s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp6omwwc7c to experimental
0m4.9s DEBUG: sources.list:
  deb http://deb.debian.org/debian/ sid main
  deb http://deb.debian.org/debian/ experimental main
0m4.9s INFO: Running scripts pre_distupgrade
0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_distupgrade_allow_unauthenticated']
0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_distupgrade_allow_unauthenticated']
0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_distupgrade_exceptions']
0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_distupgrade_exceptions']
0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386']
0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386']
0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_distupgrade_zz_database-server']
0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_distupgrade_zz_database-server']
0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_distupgrade_zz_upgrade_early']
0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_distupgrade_zz_upgrade_early']
0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-get', 'update']
0m5.5s DUMP: 
  Hit:1 http://deb.debian.org/debian sid InRelease
  Get:2 http://deb.debian.org/debian experimental InRelease [101 kB]
  Get:3 http://deb.debian.org/debian experimental/main amd64 Packages [462 kB]
  Get:4 http://deb.debian.org/debian experimental/main Translation-en [281 kB]
  Fetched 844 kB in 0s (7531 kB/s)
  Reading package lists...
0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-get', 'update']
0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-get', '-yf', 'dist-upgrade']
0m5.8s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  Calculating upgrade...
  0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-get', '-yf', 'dist-upgrade']
0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m6.0s DUMP: 
  b069c6c638396c7a1110923ba0151386  -
0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'sh', '-c', 'apt-cache dumpavail | md5sum']
0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-cache', 'show', '--no-all-versions', 'libncbi-wvdb3']
0m6.1s DUMP: 
  Package: libncbi-wvdb3
  Source: ncbi-vdb
  Version: 3.0.9+dfsg-2
  Installed-Size: 3526
  Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
  Architecture: amd64
  Depends: libbz2-1.0, libc6 (>= 2.38), libmbedcrypto16 (>= 3.6.0), libmbedtls21 (>= 3.6.0), libmbedx509-7 (>= 3.6.0), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.2.2), ncbi-vdb-data (>= 3.0.9+dfsg-2)
  Description-en: virtual layer update module of ncbi-vdb library
   The (US) National Center for Biotechnology Information (NCBI)'s
   Virtual/Vertical Database (VDB) is a highly compressed column-oriented
   data warehousing technology developed initially to address the needs
   of the Sequence Read Archive (SRA). It is unique in that it builds
   databases from smaller parts that can function independently as
   _documents_, supports effective and efficient compression, supports
   encryption while remaining encrypted on disk, transparent distribution
   and remote access.
   .
   This package contains a runtime library for updating VDB data.
  Description-md5: 8a7b8bf0ce8fc54e15a4863648ce9ebb
  Multi-Arch: same
  Homepage: https://github.com/ncbi/ncbi-vdb
  Tag: role::shared-lib
  Section: libs
  Priority: optional
  Filename: pool/main/n/ncbi-vdb/libncbi-wvdb3_3.0.9+dfsg-2_amd64.deb
  Size: 1191060
  MD5sum: 79bf5cea4c76a57f0f57c32615e5c3c0
  SHA256: 0f8dd6f844753fba5bc949e3789729087b815dd3da1d9b83fe53bc904308b7b0
0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-cache', 'show', '--no-all-versions', 'libncbi-wvdb3']
0m6.1s INFO: apt-cache knows about the following packages: libncbi-wvdb3
0m6.1s INFO: Running scripts pre_install
0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_database-server']
0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_database-server']
0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_exceptions']
0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_exceptions']
0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_extras']
0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_extras']
0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_foreign_architecture']
0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_foreign_architecture']
0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-cache', 'policy']
0m6.1s DUMP: 
  Package files:
   100 /var/lib/dpkg/status
       release a=now
     1 http://deb.debian.org/debian experimental/main amd64 Packages
       release o=Debian,a=experimental,n=rc-buggy,l=Debian,c=main,b=amd64
       origin deb.debian.org
   500 http://deb.debian.org/debian sid/main amd64 Packages
       release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64
       origin deb.debian.org
  Pinned packages:
0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-cache', 'policy']
0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-cache', 'policy', 'libncbi-wvdb3']
0m6.1s DUMP: 
  libncbi-wvdb3:
    Installed: 3.0.9+dfsg-2
    Candidate: 3.0.9+dfsg-2
    Version table:
       3.1.1+dfsg-1 1
            1 http://deb.debian.org/debian experimental/main amd64 Packages
   *** 3.0.9+dfsg-2 500
          500 http://deb.debian.org/debian sid/main amd64 Packages
          100 /var/lib/dpkg/status
0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-cache', 'policy', 'libncbi-wvdb3']
0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-get', '-y', '-t', 'experimental', 'install', 'libncbi-wvdb3']
0m7.3s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  The following additional packages will be installed:
    ncbi-vdb-data
  The following packages will be upgraded:
    libncbi-wvdb3 ncbi-vdb-data
  2 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
  Need to get 1268 kB of archives.
  After this operation, 2048 B of additional disk space will be used.
  Get:1 http://deb.debian.org/debian experimental/main amd64 ncbi-vdb-data all 3.1.1+dfsg-1 [74.7 kB]
  Get:2 http://deb.debian.org/debian experimental/main amd64 libncbi-wvdb3 amd64 3.1.1+dfsg-1 [1193 kB]
  debconf: delaying package configuration, since apt-utils is not installed
  Fetched 1268 kB in 1s (1888 kB/s)
  (Reading database ... 
  (Reading database ... 5%
  (Reading database ... 10%
  (Reading database ... 15%
  (Reading database ... 20%
  (Reading database ... 25%
  (Reading database ... 30%
  (Reading database ... 35%
  (Reading database ... 40%
  (Reading database ... 45%
  (Reading database ... 50%
  (Reading database ... 55%
  (Reading database ... 60%
  (Reading database ... 65%
  (Reading database ... 70%
  (Reading database ... 75%
  (Reading database ... 80%
  (Reading database ... 85%
  (Reading database ... 90%
  (Reading database ... 95%
  (Reading database ... 100%
  (Reading database ... 5209 files and directories currently installed.)
  Preparing to unpack .../ncbi-vdb-data_3.1.1+dfsg-1_all.deb ...
  Unpacking ncbi-vdb-data (3.1.1+dfsg-1) over (3.0.9+dfsg-2) ...
  Preparing to unpack .../libncbi-wvdb3_3.1.1+dfsg-1_amd64.deb ...
  Unpacking libncbi-wvdb3:amd64 (3.1.1+dfsg-1) over (3.0.9+dfsg-2) ...
  Setting up ncbi-vdb-data (3.1.1+dfsg-1) ...
  Setting up libncbi-wvdb3:amd64 (3.1.1+dfsg-1) ...
  Processing triggers for libc-bin (2.40-4) ...
0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-get', '-y', '-t', 'experimental', 'install', 'libncbi-wvdb3']
0m7.3s INFO: Running scripts post_install
0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_install_exceptions']
0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_install_exceptions']
0m7.3s INFO: Running scripts post_distupgrade
0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_distupgrade_base_cleanup']
0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_distupgrade_base_cleanup']
0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_distupgrade_exceptions']
0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_distupgrade_exceptions']
0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_distupgrade_force-unsafe-io']
0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_distupgrade_force-unsafe-io']
0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_distupgrade_squeeze-backports']
0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_distupgrade_squeeze-backports']
0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_distupgrade_zz_backports']
0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_distupgrade_zz_backports']
0m7.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c']
0m7.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c']
0m7.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c']
0m7.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c']
0m7.7s INFO: Running scripts pre_install
0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_database-server']
0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_database-server']
0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_exceptions']
0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_exceptions']
0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_extras']
0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_extras']
0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_foreign_architecture']
0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_foreign_architecture']
0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-cache', 'policy']
0m7.8s DUMP: 
  Package files:
   100 /var/lib/dpkg/status
       release a=now
     1 http://deb.debian.org/debian experimental/main amd64 Packages
       release o=Debian,a=experimental,n=rc-buggy,l=Debian,c=main,b=amd64
       origin deb.debian.org
   500 http://deb.debian.org/debian sid/main amd64 Packages
       release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64
       origin deb.debian.org
  Pinned packages:
0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-cache', 'policy']
0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-cache', 'policy', 'libncbi-wvdb3']
0m7.8s DUMP: 
  libncbi-wvdb3:
    Installed: 3.1.1+dfsg-1
    Candidate: 3.1.1+dfsg-1
    Version table:
   *** 3.1.1+dfsg-1 100
            1 http://deb.debian.org/debian experimental/main amd64 Packages
          100 /var/lib/dpkg/status
       3.0.9+dfsg-2 500
          500 http://deb.debian.org/debian sid/main amd64 Packages
0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-cache', 'policy', 'libncbi-wvdb3']
0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-get', '-y', '-t', 'experimental', 'install', 'libncbi-wvdb3=3.1.1+dfsg-1']
0m8.0s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  libncbi-wvdb3 is already the newest version (3.1.1+dfsg-1).
  0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded.
0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-get', '-y', '-t', 'experimental', 'install', 'libncbi-wvdb3=3.1.1+dfsg-1']
0m8.0s INFO: Running scripts post_install
0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_install_exceptions']
0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_install_exceptions']
0m8.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c']
0m8.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c']
0m8.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', '-ac', '--ignore-obsolete']
0m8.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', '-ac', '--ignore-obsolete']
0m8.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate']
0m8.8s DUMP: 
  0.15.6
0m8.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate']
0m8.8s INFO: Running adequate version 0.15.6 now.
0m8.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'libncbi-wvdb3']
0m8.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'libncbi-wvdb3']
0m8.8s INFO: Running scripts pre_remove
0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_remove_40_find_missing_md5sums']
0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_remove_40_find_missing_md5sums']
0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles']
0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles']
0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_remove_40_find_unowned_lib_links']
0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_remove_40_find_unowned_lib_links']
0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_remove_50_find_bad_permissions']
0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_remove_50_find_bad_permissions']
0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_remove_50_find_missing_copyright']
0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_remove_50_find_missing_copyright']
0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_remove_exceptions']
0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/pre_remove_exceptions']
0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m9.1s DUMP: 
  install ok installed	apt	apt	2.9.17
  install ok installed	base-files	base-files	13.6
  install ok installed	base-passwd	base-passwd	3.6.5
  install ok installed	bash	bash	5.2.37-1
  install ok installed	bsdutils	bsdutils	1:2.40.2-12
  install ok installed	coreutils	coreutils	9.5-1+b1
  install ok installed	dash	dash	0.5.12-9
  install ok installed	debconf	debconf	1.5.87
  install ok installed	debian-archive-keyring	debian-archive-keyring	2023.4
  install ok installed	debianutils	debianutils	5.21
  install ok installed	diffutils	diffutils	1:3.10-1
  install ok installed	dpkg	dpkg	1.22.11
  install ok installed	e2fsprogs	e2fsprogs	1.47.2~rc1-2
  install ok installed	findutils	findutils	4.10.0-3
  install ok installed	gcc-14-base:amd64	gcc-14-base	14.2.0-8
  install ok installed	gpgv	gpgv	2.2.45-2
  install ok installed	grep	grep	3.11-4
  install ok installed	gzip	gzip	1.12-1.2
  install ok installed	hostname	hostname	3.25
  install ok installed	init-system-helpers	init-system-helpers	1.67
  install ok installed	libacl1:amd64	libacl1	2.3.2-2+b1
  install ok installed	libapt-pkg6.0t64:amd64	libapt-pkg6.0t64	2.9.17
  install ok installed	libattr1:amd64	libattr1	1:2.5.2-2
  install ok installed	libaudit-common	libaudit-common	1:4.0.2-2
  install ok installed	libaudit1:amd64	libaudit1	1:4.0.2-2
  install ok installed	libblkid1:amd64	libblkid1	2.40.2-12
  install ok installed	libbsd0:amd64	libbsd0	0.12.2-2
  install ok installed	libbz2-1.0:amd64	libbz2-1.0	1.0.8-6
  install ok installed	libc-bin	libc-bin	2.40-4
  install ok installed	libc6:amd64	libc6	2.40-4
  install ok installed	libcap-ng0:amd64	libcap-ng0	0.8.5-4
  install ok installed	libcap2:amd64	libcap2	1:2.66-5+b1
  install ok installed	libcom-err2:amd64	libcom-err2	1.47.2~rc1-2
  install ok installed	libcrypt1:amd64	libcrypt1	1:4.4.36-5
  install ok installed	libdb5.3t64:amd64	libdb5.3t64	5.3.28+dfsg2-9
  install ok installed	libdebconfclient0:amd64	libdebconfclient0	0.274
  install ok installed	libext2fs2t64:amd64	libext2fs2t64	1.47.2~rc1-2
  install ok installed	libffi8:amd64	libffi8	3.4.6-1
  install ok installed	libgcc-s1:amd64	libgcc-s1	14.2.0-8
  install ok installed	libgcrypt20:amd64	libgcrypt20	1.11.0-6
  install ok installed	libgmp10:amd64	libgmp10	2:6.3.0+dfsg-3
  install ok installed	libgnutls30t64:amd64	libgnutls30t64	3.8.8-2
  install ok installed	libgpg-error0:amd64	libgpg-error0	1.51-2
  install ok installed	libhogweed6t64:amd64	libhogweed6t64	3.10-1+b1
  install ok installed	libidn2-0:amd64	libidn2-0	2.3.7-2+b1
  install ok installed	liblz4-1:amd64	liblz4-1	1.9.4-3+b1
  install ok installed	liblzma5:amd64	liblzma5	5.6.3-1+b1
  install ok installed	libmbedcrypto16:amd64	libmbedcrypto16	3.6.2-3
  install ok installed	libmbedtls21:amd64	libmbedtls21	3.6.2-3
  install ok installed	libmbedx509-7:amd64	libmbedx509-7	3.6.2-3
  install ok installed	libmd0:amd64	libmd0	1.1.0-2+b1
  install ok installed	libmount1:amd64	libmount1	2.40.2-12
  install ok installed	libncbi-wvdb3:amd64	libncbi-wvdb3	3.1.1+dfsg-1
  install ok installed	libnettle8t64:amd64	libnettle8t64	3.10-1+b1
  install ok installed	libp11-kit0:amd64	libp11-kit0	0.25.5-2+b1
  install ok installed	libpam-modules:amd64	libpam-modules	1.5.3-7+b1
  install ok installed	libpam-modules-bin	libpam-modules-bin	1.5.3-7+b1
  install ok installed	libpam-runtime	libpam-runtime	1.5.3-7
  install ok installed	libpam0g:amd64	libpam0g	1.5.3-7+b1
  install ok installed	libpcre2-8-0:amd64	libpcre2-8-0	10.44-5
  install ok installed	libseccomp2:amd64	libseccomp2	2.5.5-2
  install ok installed	libselinux1:amd64	libselinux1	3.7-3+b1
  install ok installed	libsemanage-common	libsemanage-common	3.7-2
  install ok installed	libsemanage2:amd64	libsemanage2	3.7-2+b1
  install ok installed	libsepol2:amd64	libsepol2	3.7-1
  install ok installed	libsmartcols1:amd64	libsmartcols1	2.40.2-12
  install ok installed	libss2:amd64	libss2	1.47.2~rc1-2
  install ok installed	libssl3t64:amd64	libssl3t64	3.3.2-2
  install ok installed	libstdc++6:amd64	libstdc++6	14.2.0-8
  install ok installed	libsystemd0:amd64	libsystemd0	257-2
  install ok installed	libtasn1-6:amd64	libtasn1-6	4.19.0-3+b3
  install ok installed	libtinfo6:amd64	libtinfo6	6.5-2+b1
  install ok installed	libudev1:amd64	libudev1	257-2
  install ok installed	libunistring5:amd64	libunistring5	1.3-1
  install ok installed	libuuid1:amd64	libuuid1	2.40.2-12
  install ok installed	libxxhash0:amd64	libxxhash0	0.8.2-2+b2
  install ok installed	libzstd1:amd64	libzstd1	1.5.6+dfsg-1+b1
  install ok installed	login	login	1:4.16.0-2+really2.40.2-12
  install ok installed	login.defs	login.defs	1:4.16.0-7
  install ok installed	logsave	logsave	1.47.2~rc1-2
  install ok installed	mawk	mawk	1.3.4.20240905-1
  install ok installed	mount	mount	2.40.2-12
  install ok installed	ncbi-vdb-data	ncbi-vdb-data	3.1.1+dfsg-1
  install ok installed	ncurses-base	ncurses-base	6.5-2
  install ok installed	ncurses-bin	ncurses-bin	6.5-2+b1
  install ok installed	openssl-provider-legacy	openssl-provider-legacy	3.3.2-2
  install ok installed	passwd	passwd	1:4.16.0-7
  install ok installed	perl-base	perl-base	5.40.0-8
  install ok installed	sed	sed	4.9-2
  install ok installed	sysvinit-utils	sysvinit-utils	3.11-1
  install ok installed	tar	tar	1.35+dfsg-3
  install ok installed	tzdata	tzdata	2024b-4
  install ok installed	usr-is-merged	usr-is-merged	39
  install ok installed	util-linux	util-linux	2.40.2-12
  install ok installed	zlib1g:amd64	zlib1g	1:1.3.dfsg+really1.3.1-1+b1
0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n']
0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-get', 'remove', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-wvdb3:amd64', 'ncbi-vdb-data']
0m9.5s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  The following packages will be REMOVED:
    libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-wvdb3 ncbi-vdb-data
  0 upgraded, 0 newly installed, 5 to remove and 0 not upgraded.
  After this operation, 5493 kB disk space will be freed.
  (Reading database ... 
  (Reading database ... 5%
  (Reading database ... 10%
  (Reading database ... 15%
  (Reading database ... 20%
  (Reading database ... 25%
  (Reading database ... 30%
  (Reading database ... 35%
  (Reading database ... 40%
  (Reading database ... 45%
  (Reading database ... 50%
  (Reading database ... 55%
  (Reading database ... 60%
  (Reading database ... 65%
  (Reading database ... 70%
  (Reading database ... 75%
  (Reading database ... 80%
  (Reading database ... 85%
  (Reading database ... 90%
  (Reading database ... 95%
  (Reading database ... 100%
  (Reading database ... 5209 files and directories currently installed.)
  Removing libncbi-wvdb3:amd64 (3.1.1+dfsg-1) ...
  Removing libmbedtls21:amd64 (3.6.2-3) ...
  Removing libmbedx509-7:amd64 (3.6.2-3) ...
  Removing libmbedcrypto16:amd64 (3.6.2-3) ...
  Removing ncbi-vdb-data (3.1.1+dfsg-1) ...
  Processing triggers for libc-bin (2.40-4) ...
0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-get', 'remove', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-wvdb3:amd64', 'ncbi-vdb-data']
0m9.5s INFO: Running scripts post_remove
0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_remove_exceptions']
0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_remove_exceptions']
0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'dpkg', '--purge', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-wvdb3:amd64', 'ncbi-vdb-data']
0m9.6s DUMP: 
  dpkg: warning: ignoring request to remove libmbedcrypto16 which isn't installed
  dpkg: warning: ignoring request to remove libmbedtls21 which isn't installed
  dpkg: warning: ignoring request to remove libmbedx509-7 which isn't installed
  dpkg: warning: ignoring request to remove libncbi-wvdb3 which isn't installed
  dpkg: warning: ignoring request to remove ncbi-vdb-data which isn't installed
0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'dpkg', '--purge', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-wvdb3:amd64', 'ncbi-vdb-data']
0m9.6s INFO: Running scripts post_purge
0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_purge_exceptions']
0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_purge_exceptions']
0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'dpkg', '--purge', '--pending']
0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'dpkg', '--purge', '--pending']
0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'dpkg', '--remove', '--pending']
0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'dpkg', '--remove', '--pending']
0m9.6s INFO: Running scripts post_test
0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_test_exceptions']
0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'tmp/scripts/post_test_exceptions']
0m9.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c']
0m9.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c']
0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'dpkg-divert', '--list']
0m9.8s DUMP: 
  diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64
  local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged
  diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64
  local diversion of /home to /home.distrib
  diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6
  diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64
  diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64
  diversion of /libx32 to /.libx32.usr-is-merged by base-files
  local diversion of /usr/bin/sync to /usr/bin/sync.distrib
  diversion of /lib32 to /.lib32.usr-is-merged by base-files
  diversion of /libo32 to /.libo32.usr-is-merged by base-files
0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'dpkg-divert', '--list']
0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-get', 'clean']
0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c', 'apt-get', 'clean']
0m9.8s DEBUG: Recording chroot state
0m10.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c/dev/shm']
0m10.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c/dev/shm']
0m10.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c/dev/console']
0m10.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c/dev/console']
0m10.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c/dev/ptmx']
0m10.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c/dev/ptmx']
0m10.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c/dev/pts']
0m10.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c/dev/pts']
0m10.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c/proc']
0m10.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c/proc']
0m10.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c']
0m10.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp6omwwc7c']
0m10.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp6omwwc7c
0m10.5s INFO: PASS: Upgrading between Debian distributions.
0m10.5s INFO: PASS: All tests.
0m10.5s INFO: piuparts run ends.

ret=0
End: 2024-12-12 21:16:43 GMT