Start: 2024-04-12 03:13:32 GMT [sid] Package: ncbi-vdb-data Source: ncbi-vdb Version: 3.0.2+dfsg-2 Installed-Size: 423 Maintainer: Debian Med Packaging Team Architecture: all Replaces: libncbi-vdb2 (<< 2.11.2+dfsg-5~) Breaks: libncbi-vdb2 (<< 2.11.2+dfsg-5~) Description: schemata and defaults for the INSDC Sequence Read Archives Multi-Arch: foreign Homepage: https://github.com/ncbi/ncbi-vdb Description-md5: 64318773fb965a7b4cab20e12b34de93 Tag: role::shared-lib Section: libs Priority: optional Filename: pool/main/n/ncbi-vdb/ncbi-vdb-data_3.0.2+dfsg-2_all.deb Size: 73284 MD5sum: 4cdaf6d6b50bfb58bb9a33b2576b5dfa SHA256: b3e8f792baf33dcfa8dfcea37f63dadbc44be9bdd908e01d86ada4bfaf125815 [experimental] Package: ncbi-vdb-data Source: ncbi-vdb Version: 3.0.9+dfsg-1 Installed-Size: 424 Maintainer: Debian Med Packaging Team Architecture: all Replaces: libncbi-vdb2 (<< 2.11.2+dfsg-5~) Breaks: libncbi-vdb2 (<< 2.11.2+dfsg-5~) Description: schemata and defaults for the INSDC Sequence Read Archives Multi-Arch: foreign Homepage: https://github.com/ncbi/ncbi-vdb Description-md5: 64318773fb965a7b4cab20e12b34de93 Tag: role::shared-lib Section: libs Priority: optional Filename: pool/main/n/ncbi-vdb/ncbi-vdb-data_3.0.9+dfsg-1_all.deb Size: 73956 MD5sum: 9a9ca4fbbfc9467c55513702f4150edd SHA256: 9f42c95c207a44fc66827cae5215a8738b4139912fdf775faf1a0e2e538c6c81 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid -d experimental -B /srv/piuparts.debian.org/slave/refchroot/sid2experimental/reference-chroot-metadata.dat --apt ncbi-vdb-data=3.0.9+dfsg-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.1~202403190841~1.4-4-g85045c69 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz -d sid -d experimental -B /srv/piuparts.debian.org/slave/refchroot/sid2experimental/reference-chroot-metadata.dat --apt ncbi-vdb-data=3.0.9+dfsg-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp78g2x42r 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp78g2x42r 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/sid-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp78g2x42r/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp78g2x42r/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp78g2x42r/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp78g2x42r/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp78g2x42r/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp78g2x42r/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp78g2x42r/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp78g2x42r/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp78g2x42r/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp78g2x42r/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp78g2x42r/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp78g2x42r/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp78g2x42r/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-get', 'update'] 0m5.2s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9902 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7192 kB] Fetched 17.3 MB in 4s (4694 kB/s) Reading package lists... 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-get', 'update'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-get', '-yf', 'dist-upgrade'] 0m7.2s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: libc-bin libc6 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3356 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.37-17 [2753 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.37-17 [603 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3356 kB in 0s (49.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5200 files and directories currently installed.) Preparing to unpack .../libc6_2.37-17_amd64.deb ... Unpacking libc6:amd64 (2.37-17) over (2.37-16) ... Setting up libc6:amd64 (2.37-17) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5200 files and directories currently installed.) Preparing to unpack .../libc-bin_2.37-17_amd64.deb ... Unpacking libc-bin (2.37-17) over (2.37-16) ... Setting up libc-bin (2.37-17) ... 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-get', '-yf', 'dist-upgrade'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.7s DUMP: fc73a31c74c5f4aa8a5db7ef82ee6bf8 - 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.7s INFO: Running scripts post_setup 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_setup_dummy_users'] 0m8.6s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_setup_dummy_users'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_setup_forbid_home'] 0m8.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_setup_forbid_home'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_setup_force-unsafe-io'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_setup_minimize'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_setup_minimize'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_setup_squeeze-backports'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_setup_zz_backports'] 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_setup_zz_backports'] 0m8.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.6s DUMP: install ok installed apt apt 2.7.14 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.40-5 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.17 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.6 install ok installed e2fsprogs e2fsprogs 1.47.0-2.4 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240330-1 install ok installed gpgv gpgv 2.2.40-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.7.14 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libblkid1:amd64 libblkid1 2.40-5 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.37-17 install ok installed libc6:amd64 libc6 2.37-17 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2.4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b3 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.0-2.4 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240330-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.5-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.9.1-2.2 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-2 install ok installed liblzma5:amd64 liblzma5 5.6.1+really5.4.5-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40-5 install ok installed libnettle8t64:amd64 libnettle8t64 3.9.1-2.2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b3 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.40-5 install ok installed libss2:amd64 libss2 1.47.0-2.4 install ok installed libssl3t64:amd64 libssl3t64 3.2.1-3 install ok installed libstdc++6:amd64 libstdc++6 14-20240330-1 install ok installed libsystemd0:amd64 libsystemd0 255.4-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libudev1:amd64 libudev1 255.4-1+b1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2.4 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.40-5 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl-base perl-base 5.38.2-3.2+b2 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.08-7 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-2 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3.1 0m8.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m8.6s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/sid2experimental/reference-chroot-metadata.dat 0m8.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp78g2x42r'] 0m9.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp78g2x42r'] 0m9.1s INFO: Running scripts is_testable 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/is_testable_uninstallable'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/is_testable_uninstallable'] 0m9.1s INFO: Running scripts pre_test 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_test_exceptions'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_test_exceptions'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_test_root_password'] 0m9.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_test_root_password'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-cache', 'show', '--no-all-versions', 'ncbi-vdb-data'] 0m9.4s DUMP: Package: ncbi-vdb-data Source: ncbi-vdb Version: 3.0.2+dfsg-2 Installed-Size: 423 Maintainer: Debian Med Packaging Team Architecture: all Replaces: libncbi-vdb2 (<< 2.11.2+dfsg-5~) Breaks: libncbi-vdb2 (<< 2.11.2+dfsg-5~) Description-en: schemata and defaults for the INSDC Sequence Read Archives The (US) National Center for Biotechnology Information (NCBI)'s Virtual/Vertical Database (VDB) is a highly compressed column-oriented data warehousing technology developed initially to address the needs of the Sequence Read Archive (SRA). It is unique in that it builds databases from smaller parts that can function independently as _documents_, supports effective and efficient compression, supports encryption while remaining encrypted on disk, transparent distribution and remote access. . This package contains VDB schemata for SRA data and default configuration files for VDB libraries. Description-md5: 64318773fb965a7b4cab20e12b34de93 Multi-Arch: foreign Homepage: https://github.com/ncbi/ncbi-vdb Tag: role::shared-lib Section: libs Priority: optional Filename: pool/main/n/ncbi-vdb/ncbi-vdb-data_3.0.2+dfsg-2_all.deb Size: 73284 MD5sum: 4cdaf6d6b50bfb58bb9a33b2576b5dfa SHA256: b3e8f792baf33dcfa8dfcea37f63dadbc44be9bdd908e01d86ada4bfaf125815 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-cache', 'show', '--no-all-versions', 'ncbi-vdb-data'] 0m9.4s INFO: apt-cache knows about the following packages: ncbi-vdb-data 0m9.4s INFO: Running scripts pre_install 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_database-server'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_database-server'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_exceptions'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_exceptions'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_extras'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_extras'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_foreign_architecture'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m9.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-cache', 'policy'] 0m9.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-cache', 'policy'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-cache', 'policy', 'ncbi-vdb-data'] 0m9.5s DUMP: ncbi-vdb-data: Installed: (none) Candidate: 3.0.2+dfsg-2 Version table: 3.0.2+dfsg-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-cache', 'policy', 'ncbi-vdb-data'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-get', '-y', 'install', 'ncbi-vdb-data'] 0m10.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: ncbi-vdb-data 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 73.3 kB of archives. After this operation, 433 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 ncbi-vdb-data all 3.0.2+dfsg-2 [73.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 73.3 kB in 0s (2523 kB/s) Selecting previously unselected package ncbi-vdb-data. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5204 files and directories currently installed.) Preparing to unpack .../ncbi-vdb-data_3.0.2+dfsg-2_all.deb ... Unpacking ncbi-vdb-data (3.0.2+dfsg-2) ... Setting up ncbi-vdb-data (3.0.2+dfsg-2) ... 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-get', '-y', 'install', 'ncbi-vdb-data'] 0m10.6s INFO: Running scripts post_install 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_install_exceptions'] 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_install_exceptions'] 0m10.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp78g2x42r'] 0m11.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp78g2x42r'] 0m11.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp78g2x42r to experimental 0m11.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main deb http://deb.debian.org/debian/ experimental main 0m11.0s INFO: Running scripts pre_distupgrade 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_distupgrade_exceptions'] 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_distupgrade_exceptions'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-get', 'update'] 0m13.0s DUMP: Hit:1 http://deb.debian.org/debian sid InRelease Get:2 http://deb.debian.org/debian experimental InRelease [101 kB] Get:3 http://deb.debian.org/debian experimental/main amd64 Packages [739 kB] Get:4 http://deb.debian.org/debian experimental/main Translation-en [390 kB] Fetched 1230 kB in 1s (1730 kB/s) Reading package lists... 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-get', 'update'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-get', '-yf', 'dist-upgrade'] 0m13.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-get', '-yf', 'dist-upgrade'] 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m14.4s DUMP: 6eadb3ce64dc33c7c92f9b1d3208787b - 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-cache', 'show', '--no-all-versions', 'ncbi-vdb-data'] 0m14.8s DUMP: Package: ncbi-vdb-data Source: ncbi-vdb Version: 3.0.2+dfsg-2 Installed-Size: 423 Maintainer: Debian Med Packaging Team Architecture: all Replaces: libncbi-vdb2 (<< 2.11.2+dfsg-5~) Breaks: libncbi-vdb2 (<< 2.11.2+dfsg-5~) Description-en: schemata and defaults for the INSDC Sequence Read Archives The (US) National Center for Biotechnology Information (NCBI)'s Virtual/Vertical Database (VDB) is a highly compressed column-oriented data warehousing technology developed initially to address the needs of the Sequence Read Archive (SRA). It is unique in that it builds databases from smaller parts that can function independently as _documents_, supports effective and efficient compression, supports encryption while remaining encrypted on disk, transparent distribution and remote access. . This package contains VDB schemata for SRA data and default configuration files for VDB libraries. Description-md5: 64318773fb965a7b4cab20e12b34de93 Multi-Arch: foreign Homepage: https://github.com/ncbi/ncbi-vdb Tag: role::shared-lib Section: libs Priority: optional Filename: pool/main/n/ncbi-vdb/ncbi-vdb-data_3.0.2+dfsg-2_all.deb Size: 73284 MD5sum: 4cdaf6d6b50bfb58bb9a33b2576b5dfa SHA256: b3e8f792baf33dcfa8dfcea37f63dadbc44be9bdd908e01d86ada4bfaf125815 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-cache', 'show', '--no-all-versions', 'ncbi-vdb-data'] 0m14.8s INFO: apt-cache knows about the following packages: ncbi-vdb-data 0m14.8s INFO: Running scripts pre_install 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_database-server'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_database-server'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_exceptions'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_exceptions'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_extras'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_extras'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_foreign_architecture'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_foreign_architecture'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-cache', 'policy'] 0m14.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 1 http://deb.debian.org/debian experimental/main amd64 Packages release o=Debian,a=experimental,n=rc-buggy,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-cache', 'policy'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-cache', 'policy', 'ncbi-vdb-data'] 0m15.0s DUMP: ncbi-vdb-data: Installed: 3.0.2+dfsg-2 Candidate: 3.0.2+dfsg-2 Version table: 3.0.9+dfsg-1 1 1 http://deb.debian.org/debian experimental/main amd64 Packages *** 3.0.2+dfsg-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-cache', 'policy', 'ncbi-vdb-data'] 0m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-get', '-y', '-t', 'experimental', 'install', 'ncbi-vdb-data'] 0m16.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: ncbi-vdb-data 1 upgraded, 0 newly installed, 0 to remove and 6 not upgraded. Need to get 74.0 kB of archives. After this operation, 1024 B of additional disk space will be used. Get:1 http://deb.debian.org/debian experimental/main amd64 ncbi-vdb-data all 3.0.9+dfsg-1 [74.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 74.0 kB in 0s (2535 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5254 files and directories currently installed.) Preparing to unpack .../ncbi-vdb-data_3.0.9+dfsg-1_all.deb ... Unpacking ncbi-vdb-data (3.0.9+dfsg-1) over (3.0.2+dfsg-2) ... Setting up ncbi-vdb-data (3.0.9+dfsg-1) ... 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-get', '-y', '-t', 'experimental', 'install', 'ncbi-vdb-data'] 0m16.1s INFO: Running scripts post_install 0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_install_exceptions'] 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_install_exceptions'] 0m16.1s INFO: Running scripts post_distupgrade 0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_distupgrade_exceptions'] 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_distupgrade_exceptions'] 0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_distupgrade_zz_backports'] 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_distupgrade_zz_backports'] 0m16.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp78g2x42r'] 0m16.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp78g2x42r'] 0m16.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp78g2x42r'] 0m16.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp78g2x42r'] 0m16.9s INFO: Running scripts pre_install 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_database-server'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_database-server'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_exceptions'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_exceptions'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_extras'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_extras'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-cache', 'policy'] 0m17.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 1 http://deb.debian.org/debian experimental/main amd64 Packages release o=Debian,a=experimental,n=rc-buggy,l=Debian,c=main,b=amd64 origin deb.debian.org 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-cache', 'policy'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-cache', 'policy', 'ncbi-vdb-data'] 0m17.1s DUMP: ncbi-vdb-data: Installed: 3.0.9+dfsg-1 Candidate: 3.0.9+dfsg-1 Version table: *** 3.0.9+dfsg-1 100 1 http://deb.debian.org/debian experimental/main amd64 Packages 100 /var/lib/dpkg/status 3.0.2+dfsg-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-cache', 'policy', 'ncbi-vdb-data'] 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-get', '-y', '-t', 'experimental', 'install', 'ncbi-vdb-data=3.0.9+dfsg-1'] 0m17.7s DUMP: Reading package lists... Building dependency tree... Reading state information... ncbi-vdb-data is already the newest version (3.0.9+dfsg-1). 0 upgraded, 0 newly installed, 0 to remove and 6 not upgraded. 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-get', '-y', '-t', 'experimental', 'install', 'ncbi-vdb-data=3.0.9+dfsg-1'] 0m17.7s INFO: Running scripts post_install 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_install_exceptions'] 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_install_exceptions'] 0m17.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp78g2x42r'] 0m18.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp78g2x42r'] /srv/piuparts.debian.org/sbin/piuparts:1639: DeprecationWarning: The 'warn' function is deprecated, use 'warning' instead logging.warn("History of available packages does not match - reference chroot may be outdated") 0m18.1s WARNING: History of available packages does not match - reference chroot may be outdated 0m18.1s DEBUG: reference: 1ad3255a45308a0176310a00e8b36416 98112ee59a53d0e2a6c471a615818ce0 0m18.1s DEBUG: current : fc73a31c74c5f4aa8a5db7ef82ee6bf8 6eadb3ce64dc33c7c92f9b1d3208787b 0m18.2s INFO: /bin converted to /usr/bin by /usr merge 0m18.2s INFO: /lib converted to /usr/lib by /usr merge 0m18.2s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 0m18.2s INFO: /lib64 converted to /usr/lib64 by /usr merge 0m18.2s INFO: /sbin converted to /usr/sbin by /usr merge 0m18.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', '-ac', '--ignore-obsolete'] 0m19.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', '-ac', '--ignore-obsolete'] 0m19.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m19.5s DUMP: 0.15.6 0m19.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m19.5s INFO: Running adequate version 0.15.6 now. 0m19.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'ncbi-vdb-data'] 0m19.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'ncbi-vdb-data'] 0m19.6s INFO: Running scripts pre_remove 0m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_remove_exceptions'] 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/pre_remove_exceptions'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m20.5s DUMP: install ok installed apt apt 2.7.14 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.40-5 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.17 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.6 install ok installed e2fsprogs e2fsprogs 1.47.0-2.4 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240330-1 install ok installed gpgv gpgv 2.2.40-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.7.14 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libblkid1:amd64 libblkid1 2.40-5 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.37-17 install ok installed libc6:amd64 libc6 2.37-17 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2.4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b3 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.0-2.4 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240330-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.5-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.9.1-2.2 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-2 install ok installed liblzma5:amd64 liblzma5 5.6.1+really5.4.5-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40-5 install ok installed libnettle8t64:amd64 libnettle8t64 3.9.1-2.2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b3 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.40-5 install ok installed libss2:amd64 libss2 1.47.0-2.4 install ok installed libssl3t64:amd64 libssl3t64 3.2.1-3 install ok installed libstdc++6:amd64 libstdc++6 14-20240330-1 install ok installed libsystemd0:amd64 libsystemd0 255.4-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libudev1:amd64 libudev1 255.4-1+b1 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2.4 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.40-5 install ok installed ncbi-vdb-data ncbi-vdb-data 3.0.9+dfsg-1 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl-base perl-base 5.38.2-3.2+b2 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.08-7 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-2 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3.1 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-get', 'remove', 'ncbi-vdb-data'] 0m21.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ncbi-vdb-data 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. After this operation, 434 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5254 files and directories currently installed.) Removing ncbi-vdb-data (3.0.9+dfsg-1) ... 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-get', 'remove', 'ncbi-vdb-data'] 0m21.6s INFO: Running scripts post_remove 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_remove_exceptions'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_remove_exceptions'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'dpkg', '--purge', 'ncbi-vdb-data'] 0m21.6s DUMP: dpkg: warning: ignoring request to remove ncbi-vdb-data which isn't installed 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'dpkg', '--purge', 'ncbi-vdb-data'] 0m21.6s INFO: Running scripts post_purge 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_purge_exceptions'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_purge_exceptions'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'dpkg', '--purge', '--pending'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'dpkg', '--purge', '--pending'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'dpkg', '--remove', '--pending'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'dpkg', '--remove', '--pending'] 0m21.6s INFO: Running scripts post_test 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_test_exceptions'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'tmp/scripts/post_test_exceptions'] 0m21.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp78g2x42r'] 0m22.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp78g2x42r'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'dpkg-divert', '--list'] 0m22.0s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 local diversion of /usr/bin/sync to /usr/bin/sync.distrib 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'dpkg-divert', '--list'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-get', 'clean'] 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp78g2x42r', 'apt-get', 'clean'] 0m22.1s DEBUG: Recording chroot state 0m23.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp78g2x42r/dev/shm'] 0m23.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp78g2x42r/dev/shm'] 0m23.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp78g2x42r/dev/console'] 0m23.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp78g2x42r/dev/console'] 0m23.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp78g2x42r/dev/ptmx'] 0m23.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp78g2x42r/dev/ptmx'] 0m23.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp78g2x42r/dev/pts'] 0m23.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp78g2x42r/dev/pts'] 0m23.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp78g2x42r/proc'] 0m23.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp78g2x42r/proc'] 0m23.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp78g2x42r'] 0m23.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp78g2x42r'] 0m23.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp78g2x42r 0m23.4s INFO: PASS: Upgrading between Debian distributions. 0m23.4s INFO: PASS: All tests. 0m23.4s INFO: piuparts run ends. ret=0 End: 2024-04-12 03:13:55 GMT