Start: 2014-03-15 16:46:11 UTC Package: emboss Priority: optional Section: science Installed-Size: 3788 Maintainer: Debian Med Packaging Team Architecture: amd64 Version: 6.1.0-5 Depends: emboss-lib, libajax6, libc6 (>= 2.7), libfreetype6 (>= 2.2.1), libgd2-noxpm (>= 2.0.36~rc1~dfsg) | libgd2-xpm (>= 2.0.36~rc1~dfsg), libjpeg62, libnucleus6, libpng12-0 (>= 1.2.13-4), libx11-6, zlib1g (>= 1:1.1.4), emboss-data (= 6.1.0-5), csh | c-shell Recommends: primer3, dialign Suggests: emboss-doc, emboss-test, embassy, clustalw Filename: pool/main/e/emboss/emboss_6.1.0-5_amd64.deb Size: 932220 MD5sum: 3ed3129a5af9cab88bcb5a9451ef819d SHA1: 3c132e05590c6d6fb68b1e3adc1da73618f5cfc5 SHA256: bd8f8be2c6370065481c124486bde946a8cef66971d76a28e47a662f1476fb7b Description: the european molecular biology open software suite EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community. The software automatically copes with data in a variety of formats and even allows transparent retrieval of sequence data from the web. Also, as extensive libraries are provided with the package, it is a platform to allow other scientists to develop and release software in true open source spirit. EMBOSS also integrates a range of currently available packages and tools for sequence analysis into a seamless whole. EMBOSS breaks the historical trend towards commercial software packages. Homepage: http://emboss.sourceforge.net Tag: field::{biology,biology:bioinformatics,biology:molecular}, implemented-in::c, interface::commandline, role::program, scope::suite, use::{analysing,comparing,converting,editing,organizing,searching,text-formatting,typesetting,viewing}, works-with::db, works-with-format::plaintext Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 35m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt emboss=6.1.0-5 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at http://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.57.1~201403012113~0.57-23-gfd8571c starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt emboss=6.1.0-5 0m0.0s INFO: Running on: Linux piu-slave-bm-a 3.2.0-4-amd64 #1 SMP Debian 3.2.54-2 x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpUM5KIo 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpUM5KIo 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.8s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ squeeze main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'apt-get', 'update'] 0m1.9s DUMP: Hit http://mirror.bm.debian.org squeeze Release.gpg Ign http://mirror.bm.debian.org/debian/ squeeze/main Translation-en Hit http://mirror.bm.debian.org squeeze Release Hit http://mirror.bm.debian.org squeeze/main amd64 Packages Reading package lists... 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'apt-get', 'update'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpUM5KIo/tmp/scripts/ 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts-squeeze to /srv/piuparts.debian.org/tmp/tmpUM5KIo/tmp/scripts/ 0m2.2s INFO: Running scripts post_setup 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/post_setup_experimental'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/post_setup_experimental'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/post_setup_forbid_home'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/post_setup_forbid_home'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m3.1s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 320 kB of archives. After this operation, 1532 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main adduser all 3.112+nmu2 [250 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main ucf all 3.0025+nmu1 [69.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 320 kB in 0s (17.2 MB/s) Selecting previously deselected package adduser. (Reading database ... 6135 files and directories currently installed.) Unpacking adduser (from .../adduser_3.112+nmu2_all.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu1_all.deb) ... Moving old data out of the way Setting up adduser (3.112+nmu2) ... Setting up ucf (3.0025+nmu1) ... 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'apt-get', 'clean'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'apt-get', 'clean'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'dpkg', '--get-selections', '*'] 0m3.6s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libgcc1 install liblocale-gettext-perl install liblzma2 install libncurses5 install libpam-modules install libpam-runtime install libpam0g install libreadline6 install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mount install ncurses-base install ncurses-bin install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'dpkg', '--get-selections', '*'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'dpkg-divert', '--list'] 0m3.6s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'dpkg-divert', '--list'] 0m3.6s INFO: apt-cache does not know about any of the requested packages 0m3.6s INFO: Running scripts pre_test 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/pre_test_root_password'] 0m3.6s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/pre_test_root_password'] 0m3.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpUM5KIo'] 0m3.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpUM5KIo'] 0m4.6s DEBUG: No broken symlinks as far as we can find. 0m4.6s INFO: Running scripts pre_install 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/pre_install_database-server'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/pre_install_database-server'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/pre_install_exceptions'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/pre_install_exceptions'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/pre_install_extras'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/pre_install_extras'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'apt-cache', 'show', 'emboss=6.1.0-5'] 0m4.7s DUMP: Package: emboss Priority: optional Section: science Installed-Size: 3788 Maintainer: Debian Med Packaging Team Architecture: amd64 Version: 6.1.0-5 Depends: emboss-lib, libajax6, libc6 (>= 2.7), libfreetype6 (>= 2.2.1), libgd2-noxpm (>= 2.0.36~rc1~dfsg) | libgd2-xpm (>= 2.0.36~rc1~dfsg), libjpeg62, libnucleus6, libpng12-0 (>= 1.2.13-4), libx11-6, zlib1g (>= 1:1.1.4), emboss-data (= 6.1.0-5), csh | c-shell Recommends: primer3, dialign Suggests: emboss-doc, emboss-test, embassy, clustalw Filename: pool/main/e/emboss/emboss_6.1.0-5_amd64.deb Size: 932220 MD5sum: 3ed3129a5af9cab88bcb5a9451ef819d SHA1: 3c132e05590c6d6fb68b1e3adc1da73618f5cfc5 SHA256: bd8f8be2c6370065481c124486bde946a8cef66971d76a28e47a662f1476fb7b Description: the european molecular biology open software suite EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community. The software automatically copes with data in a variety of formats and even allows transparent retrieval of sequence data from the web. Also, as extensive libraries are provided with the package, it is a platform to allow other scientists to develop and release software in true open source spirit. EMBOSS also integrates a range of currently available packages and tools for sequence analysis into a seamless whole. EMBOSS breaks the historical trend towards commercial software packages. Homepage: http://emboss.sourceforge.net Tag: field::{biology,biology:bioinformatics,biology:molecular}, implemented-in::c, interface::commandline, role::program, scope::suite, use::{analysing,comparing,converting,editing,organizing,searching,text-formatting,typesetting,viewing}, works-with::db, works-with-format::plaintext 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'apt-cache', 'show', 'emboss=6.1.0-5'] 0m4.8s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed Depends: emboss-lib, libajax6, libc6 (>= 2.7), libfreetype6 (>= 2.2.1), libgd2-noxpm (>= 2.0.36~rc1~dfsg) | libgd2-xpm (>= 2.0.36~rc1~dfsg), libjpeg62, libnucleus6, libpng12-0 (>= 1.2.13-4), libx11-6, zlib1g (>= 1:1.1.4), emboss-data (= 6.1.0-5), csh | c-shell 0m4.8s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmprivsTJ/piuparts-depends-dummy'] 0m4.8s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmprivsTJ/piuparts-depends-dummy.deb'. 0m4.8s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmprivsTJ/piuparts-depends-dummy'] 0m4.8s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmprivsTJ/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpUM5KIo/tmp 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m4.8s DUMP: Selecting previously deselected package piuparts-depends-dummy. (Reading database ... 6258 files and directories currently installed.) Unpacking piuparts-depends-dummy (from tmp/piuparts-depends-dummy.deb) ... dpkg: dependency problems prevent configuration of piuparts-depends-dummy: piuparts-depends-dummy depends on emboss-lib; however: Package emboss-lib is not installed. piuparts-depends-dummy depends on libajax6; however: Package libajax6 is not installed. piuparts-depends-dummy depends on libfreetype6 (>= 2.2.1); however: Package libfreetype6 is not installed. piuparts-depends-dummy depends on libgd2-noxpm (>= 2.0.36~rc1~dfsg) | libgd2-xpm (>= 2.0.36~rc1~dfsg); however: Package libgd2-noxpm is not installed. Package libgd2-xpm is not installed. piuparts-depends-dummy depends on libjpeg62; however: Package libjpeg62 is not installed. piuparts-depends-dummy depends on libnucleus6; however: Package libnucleus6 is not installed. piuparts-depends-dummy depends on libpng12-0 (>= 1.2.13-4); however: Package libpng12-0 is not installed. piuparts-depends-dummy depends on libx11-6; however: Package libx11-6 is not installed. piuparts-depends-dummy depends on emboss-data (= 6.1.0-5); however: Package emboss-data is not installed. piuparts-depends-dummy depends on csh | c-shell; however: Package csh is not installed. Package c-shell is not installed. dpkg: error processing piuparts-depends-dummy (--install): dependency problems - leaving unconfigured Errors were encountered while processing: piuparts-depends-dummy 0m4.8s DEBUG: Command failed (status=1), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'apt-get', '-yf', 'install'] 0m6.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Correcting dependencies... Done The following extra packages will be installed: csh emboss-data emboss-lib libajax6 libfreetype6 libgd2-noxpm libjpeg62 libnucleus6 libpng12-0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 Suggested packages: libgd-tools The following NEW packages will be installed: csh emboss-data emboss-lib libajax6 libfreetype6 libgd2-noxpm libjpeg62 libnucleus6 libpng12-0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 0 upgraded, 14 newly installed, 0 to remove and 0 not upgraded. 1 not fully installed or removed. Need to get 4618 kB of archives. After this operation, 15.3 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main emboss-lib amd64 6.1.0-5 [449 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main libajax6 amd64 6.1.0-5 [875 kB] Get:3 http://mirror.bm.debian.org/debian/ squeeze/main libfreetype6 amd64 2.4.2-2.1+squeeze4 [377 kB] Get:4 http://mirror.bm.debian.org/debian/ squeeze/main libjpeg62 amd64 6b1-1 [94.0 kB] Get:5 http://mirror.bm.debian.org/debian/ squeeze/main libpng12-0 amd64 1.2.44-1+squeeze4 [180 kB] Get:6 http://mirror.bm.debian.org/debian/ squeeze/main libgd2-noxpm amd64 2.0.36~rc1~dfsg-5 [229 kB] Get:7 http://mirror.bm.debian.org/debian/ squeeze/main libnucleus6 amd64 6.1.0-5 [211 kB] Get:8 http://mirror.bm.debian.org/debian/ squeeze/main libxau6 amd64 1:1.0.6-1 [16.8 kB] Get:9 http://mirror.bm.debian.org/debian/ squeeze/main libxdmcp6 amd64 1:1.0.3-2 [19.3 kB] Get:10 http://mirror.bm.debian.org/debian/ squeeze/main libxcb1 amd64 1.6-1+squeeze1 [44.3 kB] Get:11 http://mirror.bm.debian.org/debian/ squeeze/main libx11-data all 2:1.3.3-4+squeeze1 [184 kB] Get:12 http://mirror.bm.debian.org/debian/ squeeze/main libx11-6 amd64 2:1.3.3-4+squeeze1 [847 kB] Get:13 http://mirror.bm.debian.org/debian/ squeeze/main emboss-data all 6.1.0-5 [834 kB] Get:14 http://mirror.bm.debian.org/debian/ squeeze/main csh amd64 20070713-2 [257 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 4618 kB in 0s (14.6 MB/s) Selecting previously deselected package emboss-lib. (Reading database ... 6258 files and directories currently installed.) Unpacking emboss-lib (from .../emboss-lib_6.1.0-5_amd64.deb) ... Selecting previously deselected package libajax6. Unpacking libajax6 (from .../libajax6_6.1.0-5_amd64.deb) ... Selecting previously deselected package libfreetype6. Unpacking libfreetype6 (from .../libfreetype6_2.4.2-2.1+squeeze4_amd64.deb) ... Selecting previously deselected package libjpeg62. Unpacking libjpeg62 (from .../libjpeg62_6b1-1_amd64.deb) ... Selecting previously deselected package libpng12-0. Unpacking libpng12-0 (from .../libpng12-0_1.2.44-1+squeeze4_amd64.deb) ... Selecting previously deselected package libgd2-noxpm. Unpacking libgd2-noxpm (from .../libgd2-noxpm_2.0.36~rc1~dfsg-5_amd64.deb) ... Selecting previously deselected package libnucleus6. Unpacking libnucleus6 (from .../libnucleus6_6.1.0-5_amd64.deb) ... Selecting previously deselected package libxau6. Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_amd64.deb) ... Selecting previously deselected package libxdmcp6. Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.0.3-2_amd64.deb) ... Selecting previously deselected package libxcb1. Unpacking libxcb1 (from .../libxcb1_1.6-1+squeeze1_amd64.deb) ... Selecting previously deselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.3.3-4+squeeze1_all.deb) ... Selecting previously deselected package libx11-6. Unpacking libx11-6 (from .../libx11-6_2%3a1.3.3-4+squeeze1_amd64.deb) ... Selecting previously deselected package emboss-data. Unpacking emboss-data (from .../emboss-data_6.1.0-5_all.deb) ... Selecting previously deselected package csh. Unpacking csh (from .../csh_20070713-2_amd64.deb) ... Setting up emboss-lib (6.1.0-5) ... Setting up libajax6 (6.1.0-5) ... Setting up libfreetype6 (2.4.2-2.1+squeeze4) ... Setting up libjpeg62 (6b1-1) ... Setting up libpng12-0 (1.2.44-1+squeeze4) ... Setting up libgd2-noxpm (2.0.36~rc1~dfsg-5) ... Setting up libnucleus6 (6.1.0-5) ... Setting up libxau6 (1:1.0.6-1) ... Setting up libxdmcp6 (1:1.0.3-2) ... Setting up libxcb1 (1.6-1+squeeze1) ... Setting up libx11-data (2:1.3.3-4+squeeze1) ... Setting up libx11-6 (2:1.3.3-4+squeeze1) ... Setting up emboss-data (6.1.0-5) ... Setting up csh (20070713-2) ... update-alternatives: using /bin/bsd-csh to provide /bin/csh (csh) in auto mode. Setting up piuparts-depends-dummy (0.invalid.0) ... 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'apt-get', '-yf', 'install'] 0m6.4s INFO: Installation of ['tmp/piuparts-depends-dummy.deb'] ok 0m6.4s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpUM5KIo/tmp/piuparts-depends-dummy.deb 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m6.4s DUMP: piuparts-depends-dummy install ok installed 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m6.4s DUMP: (Reading database ... 7289 files and directories currently installed.) Removing piuparts-depends-dummy ... 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'apt-get', 'clean'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'apt-get', 'clean'] 0m7.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpUM5KIo'] 0m7.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpUM5KIo'] 0m8.1s DEBUG: No broken symlinks as far as we can find. 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'apt-cache', 'policy'] 0m8.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages release v=6.0.9,o=Debian,a=oldstable,n=squeeze,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'apt-cache', 'policy'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'apt-cache', 'policy', 'emboss'] 0m8.2s DUMP: emboss: Installed: (none) Candidate: 6.1.0-5 Version table: 6.1.0-5 0 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'apt-cache', 'policy', 'emboss'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'apt-get', '-y', 'install', 'emboss=6.1.0-5'] 0m9.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Suggested packages: emboss-doc emboss-test embassy clustalw Recommended packages: primer3 dialign The following NEW packages will be installed: emboss 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 932 kB of archives. After this operation, 3879 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main emboss amd64 6.1.0-5 [932 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 932 kB in 0s (15.5 MB/s) Selecting previously deselected package emboss. (Reading database ... 7289 files and directories currently installed.) Unpacking emboss (from .../emboss_6.1.0-5_amd64.deb) ... Setting up emboss (6.1.0-5) ... 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'apt-get', '-y', 'install', 'emboss=6.1.0-5'] 0m9.0s INFO: Running scripts post_install 0m9.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpUM5KIo'] 0m9.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpUM5KIo'] 0m10.1s DEBUG: No broken symlinks as far as we can find. 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'dpkg', '--get-selections', '*'] 0m10.2s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install csh install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install emboss install emboss-data install emboss-lib install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libajax6 install libattr1 install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libfreetype6 install libgcc1 install libgd2-noxpm install libjpeg62 install liblocale-gettext-perl install liblzma2 install libncurses5 install libnucleus6 install libpam-modules install libpam-runtime install libpam0g install libpng12-0 install libreadline6 install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install libx11-6 install libx11-data install libxau6 install libxcb1 install libxdmcp6 install login install lsb-base install mawk install mount install ncurses-base install ncurses-bin install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'dpkg', '--get-selections', '*'] 0m10.9s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', '-ac'] 0m11.5s DUMP: debsums: no md5sums for mawk 0m11.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', '-ac'] 0m11.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m11.5s DUMP: 0.11.3~bpo70+1 0m11.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m11.5s INFO: Running adequate version 0.11.3~bpo70+1 now. 0m11.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'emboss'] 0m12.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'emboss'] 0m12.9s INFO: Running scripts pre_remove 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/pre_remove_exceptions'] 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/pre_remove_exceptions'] 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'apt-get', 'remove', 'libx11-6', 'libnucleus6', 'libgd2-noxpm', 'emboss-lib', 'libpng12-0', 'libx11-data', 'libjpeg62', 'libfreetype6', 'emboss-data', 'libxcb1', 'libxau6', 'libajax6', 'libxdmcp6', 'csh', 'emboss'] 0m13.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: csh emboss emboss-data emboss-lib libajax6 libfreetype6 libgd2-noxpm libjpeg62 libnucleus6 libpng12-0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 0 upgraded, 0 newly installed, 15 to remove and 0 not upgraded. After this operation, 19.2 MB disk space will be freed. (Reading database ... 7917 files and directories currently installed.) Removing emboss ... Removing csh ... Removing emboss-data ... Removing emboss-lib ... Removing libajax6 ... Removing libgd2-noxpm ... Removing libfreetype6 ... Removing libjpeg62 ... Removing libnucleus6 ... Removing libpng12-0 ... Removing libx11-6 ... Removing libx11-data ... Removing libxcb1 ... Removing libxau6 ... Removing libxdmcp6 ... 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'apt-get', 'remove', 'libx11-6', 'libnucleus6', 'libgd2-noxpm', 'emboss-lib', 'libpng12-0', 'libx11-data', 'libjpeg62', 'libfreetype6', 'emboss-data', 'libxcb1', 'libxau6', 'libajax6', 'libxdmcp6', 'csh', 'emboss'] 0m13.7s INFO: Running scripts post_remove 0m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/post_remove_exceptions_lenny'] 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/post_remove_exceptions_lenny'] 0m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/post_remove_extras'] 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/post_remove_extras'] 0m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'dpkg', '--purge', 'libx11-6', 'libnucleus6', 'libgd2-noxpm', 'emboss-lib', 'libpng12-0', 'libx11-data', 'libjpeg62', 'libfreetype6', 'emboss-data', 'libxcb1', 'libxau6', 'libajax6', 'libxdmcp6', 'csh'] 0m13.7s DUMP: (Reading database ... 6258 files and directories currently installed.) Removing libx11-6 ... Purging configuration files for libx11-6 ... Removing libnucleus6 ... Purging configuration files for libnucleus6 ... Removing libgd2-noxpm ... Purging configuration files for libgd2-noxpm ... Removing emboss-lib ... Purging configuration files for emboss-lib ... Removing libpng12-0 ... Purging configuration files for libpng12-0 ... dpkg: warning: ignoring request to remove libx11-data which isn't installed. dpkg: warning: ignoring request to remove libjpeg62 which isn't installed. Removing libfreetype6 ... Purging configuration files for libfreetype6 ... dpkg: warning: ignoring request to remove emboss-data which isn't installed. Removing libxcb1 ... Purging configuration files for libxcb1 ... Removing libxau6 ... Purging configuration files for libxau6 ... Removing libajax6 ... Purging configuration files for libajax6 ... Removing libxdmcp6 ... Purging configuration files for libxdmcp6 ... dpkg: warning: ignoring request to remove csh which isn't installed. 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'dpkg', '--purge', 'libx11-6', 'libnucleus6', 'libgd2-noxpm', 'emboss-lib', 'libpng12-0', 'libx11-data', 'libjpeg62', 'libfreetype6', 'emboss-data', 'libxcb1', 'libxau6', 'libajax6', 'libxdmcp6', 'csh'] 0m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'dpkg', '--purge', 'emboss'] 0m13.8s DUMP: dpkg: warning: ignoring request to remove emboss which isn't installed. 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'dpkg', '--purge', 'emboss'] 0m13.8s INFO: Running scripts post_purge 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/post_purge_exceptions'] 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'tmp/scripts/post_purge_exceptions'] 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'dpkg', '--purge', '--pending'] 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'dpkg', '--purge', '--pending'] 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'dpkg', '--remove', '--pending'] 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'dpkg', '--remove', '--pending'] 0m13.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpUM5KIo'] 0m14.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpUM5KIo'] 0m14.8s DEBUG: No broken symlinks as far as we can find. 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'dpkg-divert', '--list'] 0m14.8s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'dpkg-divert', '--list'] 0m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'apt-get', 'clean'] 0m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'apt-get', 'clean'] 0m15.8s INFO: PASS: Installation and purging test. 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'umount', '/proc'] 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpUM5KIo', 'umount', '/proc'] 0m16.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpUM5KIo'] 0m16.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpUM5KIo'] 0m16.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpUM5KIo 0m16.1s INFO: PASS: All tests. 0m16.1s INFO: piuparts run ends. ret=0 End: 2014-03-15 16:46:27 UTC