Start: 2014-02-28 03:24:16 UTC Package: hmmer-pvm Priority: optional Section: science Installed-Size: 836 Maintainer: Debian-Med Packaging Team Architecture: amd64 Source: hmmer Version: 2.3.2-5 Depends: libc6 (>= 2.7-1), libpvm3, pvm Suggests: hmmer-doc (>= 2.3.2-5) Filename: pool/main/h/hmmer/hmmer-pvm_2.3.2-5_amd64.deb Size: 388426 MD5sum: 30afe690477f432569aceed1b82e3249 SHA1: 74b5ab412862fcf9df0d29d2f05c74667decbdf3 SHA256: 24decf6a009a978bf5d226ec222f719aa2d5c74dab713bde0653a1aa0f6ed84f Description: HMMER programs with PVM (Parallel Virtual Machine) support HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. . This package contains HMMER programs compiled with PVM support. Homepage: http://hmmer.janelia.org/ Tag: biology::{format:aln,format:fasta,peptidic}, field::biology, field::biology:bioinformatics, implemented-in::c, interface::commandline, role::program, scope::utility, use::searching, works-with::db, works-with-format::plaintext Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 35m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt hmmer-pvm=2.3.2-5 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at http://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.57.1~201402172317~0.57-12-g4a108e2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt hmmer-pvm=2.3.2-5 0m0.0s INFO: Running on: Linux piu-slave-bm-a 3.2.0-4-amd64 #1 SMP Debian 3.2.54-2 x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpw2WzZd 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpw2WzZd 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.9s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.9s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ squeeze main 0m1.9s DEBUG: Created policy-rc.d and chmodded it. 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'apt-get', 'update'] 0m3.7s DUMP: Get:1 http://mirror.bm.debian.org squeeze Release.gpg [1672 B] Ign http://mirror.bm.debian.org/debian/ squeeze/main Translation-en Get:2 http://mirror.bm.debian.org squeeze Release [96.0 kB] Get:3 http://mirror.bm.debian.org squeeze/main amd64 Packages [8388 kB] Fetched 8486 kB in 1s (7990 kB/s) Reading package lists... 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'apt-get', 'update'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'apt-get', '-yf', 'dist-upgrade'] 0m4.9s DUMP: Reading package lists... Building dependency tree... The following packages will be upgraded: base-files gnupg gpgv tzdata 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3067 kB of archives. After this operation, 52.2 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main base-files amd64 6.0squeeze9 [76.1 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main gpgv amd64 1.4.10-4+squeeze4 [222 kB] Get:3 http://mirror.bm.debian.org/debian/ squeeze/main gnupg amd64 1.4.10-4+squeeze4 [2148 kB] Get:4 http://mirror.bm.debian.org/debian/ squeeze/main tzdata all 2013i-0squeeze1 [621 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3067 kB in 0s (31.4 MB/s) (Reading database ... 6155 files and directories currently installed.) Preparing to replace base-files 6.0squeeze8 (using .../base-files_6.0squeeze9_amd64.deb) ... Unpacking replacement base-files ... Setting up base-files (6.0squeeze9) ... Installing new version of config file /etc/debian_version ... (Reading database ... 6155 files and directories currently installed.) Preparing to replace gpgv 1.4.10-4+squeeze3 (using .../gpgv_1.4.10-4+squeeze4_amd64.deb) ... Unpacking replacement gpgv ... Setting up gpgv (1.4.10-4+squeeze4) ... (Reading database ... 6155 files and directories currently installed.) Preparing to replace gnupg 1.4.10-4+squeeze3 (using .../gnupg_1.4.10-4+squeeze4_amd64.deb) ... Unpacking replacement gnupg ... Setting up gnupg (1.4.10-4+squeeze4) ... (Reading database ... 6155 files and directories currently installed.) Preparing to replace tzdata 2013d-0squeeze1 (using .../tzdata_2013i-0squeeze1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2013i-0squeeze1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Feb 28 03:24:21 UTC 2014. Universal Time is now: Fri Feb 28 03:24:21 UTC 2014. Run 'dpkg-reconfigure tzdata' if you wish to change it. 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'apt-get', '-yf', 'dist-upgrade'] 0m4.9s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpw2WzZd/tmp/scripts/ 0m4.9s DEBUG: Copying scriptsdir /etc/piuparts/scripts-squeeze to /srv/piuparts.debian.org/tmp/tmpw2WzZd/tmp/scripts/ 0m4.9s INFO: Running scripts post_setup 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/post_setup_experimental'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/post_setup_experimental'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/post_setup_forbid_home'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/post_setup_forbid_home'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' `/bin/sync' -> `true' 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m5.9s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 320 kB of archives. After this operation, 1532 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main adduser all 3.112+nmu2 [250 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main ucf all 3.0025+nmu1 [69.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 320 kB in 0s (18.8 MB/s) Selecting previously deselected package adduser. (Reading database ... 6135 files and directories currently installed.) Unpacking adduser (from .../adduser_3.112+nmu2_all.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu1_all.deb) ... Moving old data out of the way Setting up adduser (3.112+nmu2) ... Setting up ucf (3.0025+nmu1) ... 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'apt-get', 'clean'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'apt-get', 'clean'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'dpkg', '--get-selections', '*'] 0m6.4s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libgcc1 install liblocale-gettext-perl install liblzma2 install libncurses5 install libpam-modules install libpam-runtime install libpam0g install libreadline6 install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mount install ncurses-base install ncurses-bin install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'dpkg', '--get-selections', '*'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'dpkg-divert', '--list'] 0m6.4s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'dpkg-divert', '--list'] 0m6.4s INFO: apt-cache does not know about any of the requested packages 0m6.4s INFO: Running scripts pre_test 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/pre_test_root_password'] 0m6.4s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/pre_test_root_password'] 0m6.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw2WzZd'] 0m6.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw2WzZd'] 0m7.4s DEBUG: No broken symlinks as far as we can find. 0m7.4s INFO: Running scripts pre_install 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/pre_install_database-server'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/pre_install_database-server'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/pre_install_exceptions'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/pre_install_exceptions'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/pre_install_extras'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/pre_install_extras'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'apt-cache', 'show', 'hmmer-pvm=2.3.2-5'] 0m7.5s DUMP: Package: hmmer-pvm Priority: optional Section: science Installed-Size: 836 Maintainer: Debian-Med Packaging Team Architecture: amd64 Source: hmmer Version: 2.3.2-5 Depends: libc6 (>= 2.7-1), libpvm3, pvm Suggests: hmmer-doc (>= 2.3.2-5) Filename: pool/main/h/hmmer/hmmer-pvm_2.3.2-5_amd64.deb Size: 388426 MD5sum: 30afe690477f432569aceed1b82e3249 SHA1: 74b5ab412862fcf9df0d29d2f05c74667decbdf3 SHA256: 24decf6a009a978bf5d226ec222f719aa2d5c74dab713bde0653a1aa0f6ed84f Description: HMMER programs with PVM (Parallel Virtual Machine) support HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. . This package contains HMMER programs compiled with PVM support. Homepage: http://hmmer.janelia.org/ Tag: biology::{format:aln,format:fasta,peptidic}, field::biology, field::biology:bioinformatics, implemented-in::c, interface::commandline, role::program, scope::utility, use::searching, works-with::db, works-with-format::plaintext 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'apt-cache', 'show', 'hmmer-pvm=2.3.2-5'] 0m7.5s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed Depends: libc6 (>= 2.7-1), libpvm3, pvm 0m7.5s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpnJAefE/piuparts-depends-dummy'] 0m7.5s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpnJAefE/piuparts-depends-dummy.deb'. 0m7.5s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpnJAefE/piuparts-depends-dummy'] 0m7.5s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpnJAefE/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpw2WzZd/tmp 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m7.5s DUMP: Selecting previously deselected package piuparts-depends-dummy. (Reading database ... 6258 files and directories currently installed.) Unpacking piuparts-depends-dummy (from tmp/piuparts-depends-dummy.deb) ... dpkg: dependency problems prevent configuration of piuparts-depends-dummy: piuparts-depends-dummy depends on libpvm3; however: Package libpvm3 is not installed. piuparts-depends-dummy depends on pvm; however: Package pvm is not installed. dpkg: error processing piuparts-depends-dummy (--install): dependency problems - leaving unconfigured Errors were encountered while processing: piuparts-depends-dummy 0m7.5s DEBUG: Command failed (status=1), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'apt-get', '-yf', 'install'] 0m11.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Correcting dependencies... Done The following extra packages will be installed: libbsd0 libedit2 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libpvm3 libssl0.9.8 openssh-client pvm Suggested packages: krb5-doc krb5-user ssh-askpass libpam-ssh keychain Recommended packages: xauth openssh-blacklist openssh-blacklist-extra The following NEW packages will be installed: libbsd0 libedit2 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libpvm3 libssl0.9.8 openssh-client pvm 0 upgraded, 11 newly installed, 0 to remove and 0 not upgraded. 1 not fully installed or removed. Need to get 2996 kB of archives. After this operation, 7418 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main libpvm3 amd64 3.4.5-12.2 [106 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main libbsd0 amd64 0.2.0-1 [41.9 kB] Get:3 http://mirror.bm.debian.org/debian/ squeeze/main libedit2 amd64 2.11-20080614-2 [71.0 kB] Get:4 http://mirror.bm.debian.org/debian/ squeeze/main libkeyutils1 amd64 1.4-1 [6942 B] Get:5 http://mirror.bm.debian.org/debian/ squeeze/main libkrb5support0 amd64 1.8.3+dfsg-4squeeze7 [46.5 kB] Get:6 http://mirror.bm.debian.org/debian/ squeeze/main libk5crypto3 amd64 1.8.3+dfsg-4squeeze7 [106 kB] Get:7 http://mirror.bm.debian.org/debian/ squeeze/main libkrb5-3 amd64 1.8.3+dfsg-4squeeze7 [374 kB] Get:8 http://mirror.bm.debian.org/debian/ squeeze/main libgssapi-krb5-2 amd64 1.8.3+dfsg-4squeeze7 [131 kB] Get:9 http://mirror.bm.debian.org/debian/ squeeze/main libssl0.9.8 amd64 0.9.8o-4squeeze14 [1002 kB] Get:10 http://mirror.bm.debian.org/debian/ squeeze/main openssh-client amd64 1:5.5p1-6+squeeze4 [933 kB] Get:11 http://mirror.bm.debian.org/debian/ squeeze/main pvm amd64 3.4.5-12.2 [178 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2996 kB in 2s (1438 kB/s) Selecting previously deselected package libpvm3. (Reading database ... 6258 files and directories currently installed.) Unpacking libpvm3 (from .../libpvm3_3.4.5-12.2_amd64.deb) ... Selecting previously deselected package libbsd0. Unpacking libbsd0 (from .../libbsd0_0.2.0-1_amd64.deb) ... Selecting previously deselected package libedit2. Unpacking libedit2 (from .../libedit2_2.11-20080614-2_amd64.deb) ... Selecting previously deselected package libkeyutils1. Unpacking libkeyutils1 (from .../libkeyutils1_1.4-1_amd64.deb) ... Selecting previously deselected package libkrb5support0. Unpacking libkrb5support0 (from .../libkrb5support0_1.8.3+dfsg-4squeeze7_amd64.deb) ... Selecting previously deselected package libk5crypto3. Unpacking libk5crypto3 (from .../libk5crypto3_1.8.3+dfsg-4squeeze7_amd64.deb) ... Selecting previously deselected package libkrb5-3. Unpacking libkrb5-3 (from .../libkrb5-3_1.8.3+dfsg-4squeeze7_amd64.deb) ... Selecting previously deselected package libgssapi-krb5-2. Unpacking libgssapi-krb5-2 (from .../libgssapi-krb5-2_1.8.3+dfsg-4squeeze7_amd64.deb) ... Selecting previously deselected package libssl0.9.8. Unpacking libssl0.9.8 (from .../libssl0.9.8_0.9.8o-4squeeze14_amd64.deb) ... Selecting previously deselected package openssh-client. Unpacking openssh-client (from .../openssh-client_1%3a5.5p1-6+squeeze4_amd64.deb) ... Selecting previously deselected package pvm. Unpacking pvm (from .../pvm_3.4.5-12.2_amd64.deb) ... Setting up libpvm3 (3.4.5-12.2) ... Setting up libbsd0 (0.2.0-1) ... Setting up libedit2 (2.11-20080614-2) ... Setting up libkeyutils1 (1.4-1) ... Setting up libkrb5support0 (1.8.3+dfsg-4squeeze7) ... Setting up libk5crypto3 (1.8.3+dfsg-4squeeze7) ... Setting up libkrb5-3 (1.8.3+dfsg-4squeeze7) ... Setting up libgssapi-krb5-2 (1.8.3+dfsg-4squeeze7) ... Setting up libssl0.9.8 (0.9.8o-4squeeze14) ... Setting up openssh-client (1:5.5p1-6+squeeze4) ... Setting up pvm (3.4.5-12.2) ... update-alternatives: using /usr/bin/rsh to provide /usr/lib/pvm3/bin/rsh (pvm-rsh) in auto mode. Setting up piuparts-depends-dummy (0.invalid.0) ... 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'apt-get', '-yf', 'install'] 0m11.0s INFO: Installation of ['tmp/piuparts-depends-dummy.deb'] ok 0m11.0s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpw2WzZd/tmp/piuparts-depends-dummy.deb 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m11.0s DUMP: piuparts-depends-dummy install ok installed 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m11.0s DUMP: (Reading database ... 6405 files and directories currently installed.) Removing piuparts-depends-dummy ... 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'apt-get', 'clean'] 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'apt-get', 'clean'] 0m11.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw2WzZd'] 0m11.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw2WzZd'] 0m12.5s DEBUG: No broken symlinks as far as we can find. 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'apt-cache', 'policy'] 0m12.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages release v=6.0.9,o=Debian,a=oldstable,n=squeeze,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'apt-cache', 'policy'] 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'apt-cache', 'policy', 'hmmer-pvm'] 0m12.6s DUMP: hmmer-pvm: Installed: (none) Candidate: 2.3.2-5 Version table: 2.3.2-5 0 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'apt-cache', 'policy', 'hmmer-pvm'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'apt-get', '-y', 'install', 'hmmer-pvm=2.3.2-5'] 0m13.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Suggested packages: hmmer-doc The following NEW packages will be installed: hmmer-pvm 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 388 kB of archives. After this operation, 856 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main hmmer-pvm amd64 2.3.2-5 [388 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 388 kB in 0s (1488 kB/s) Selecting previously deselected package hmmer-pvm. (Reading database ... 6405 files and directories currently installed.) Unpacking hmmer-pvm (from .../hmmer-pvm_2.3.2-5_amd64.deb) ... Setting up hmmer-pvm (2.3.2-5) ... 0m13.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'apt-get', '-y', 'install', 'hmmer-pvm=2.3.2-5'] 0m13.4s INFO: Running scripts post_install 0m13.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw2WzZd'] 0m13.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw2WzZd'] 0m14.5s DEBUG: No broken symlinks as far as we can find. 0m14.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'dpkg', '--get-selections', '*'] 0m14.5s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hmmer-pvm install hostname install initscripts install insserv install libacl1 install libattr1 install libblkid1 install libbsd0 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libedit2 install libgcc1 install libgssapi-krb5-2 install libk5crypto3 install libkeyutils1 install libkrb5-3 install libkrb5support0 install liblocale-gettext-perl install liblzma2 install libncurses5 install libpam-modules install libpam-runtime install libpam0g install libpvm3 install libreadline6 install libselinux1 install libsepol1 install libslang2 install libss2 install libssl0.9.8 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mount install ncurses-base install ncurses-bin install openssh-client install passwd install perl-base install pvm install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m14.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'dpkg', '--get-selections', '*'] 0m15.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', '-ac'] 0m15.6s DUMP: debsums: no md5sums for mawk 0m15.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', '-ac'] 0m15.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m15.6s DUMP: 0.11.3~bpo70+1 0m15.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m15.6s INFO: Running adequate version 0.11.3~bpo70+1 now. 0m15.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'hmmer-pvm'] 0m15.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'hmmer-pvm'] 0m15.7s INFO: Running scripts pre_remove 0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/pre_remove_exceptions'] 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/pre_remove_exceptions'] 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'apt-get', 'remove', 'openssh-client', 'libk5crypto3', 'libssl0.9.8', 'libpvm3', 'libkrb5-3', 'libgssapi-krb5-2', 'libedit2', 'pvm', 'libkrb5support0', 'libkeyutils1', 'libbsd0', 'hmmer-pvm'] 0m16.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: hmmer-pvm libbsd0 libedit2 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libpvm3 libssl0.9.8 openssh-client pvm 0 upgraded, 0 newly installed, 12 to remove and 0 not upgraded. After this operation, 8274 kB disk space will be freed. (Reading database ... 6416 files and directories currently installed.) Removing hmmer-pvm ... Removing pvm ... Removing openssh-client ... Removing libedit2 ... Removing libbsd0 ... Removing libgssapi-krb5-2 ... Removing libkrb5-3 ... Removing libk5crypto3 ... Removing libkrb5support0 ... Removing libkeyutils1 ... Removing libpvm3 ... Removing libssl0.9.8 ... 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'apt-get', 'remove', 'openssh-client', 'libk5crypto3', 'libssl0.9.8', 'libpvm3', 'libkrb5-3', 'libgssapi-krb5-2', 'libedit2', 'pvm', 'libkrb5support0', 'libkeyutils1', 'libbsd0', 'hmmer-pvm'] 0m16.6s INFO: Running scripts post_remove 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/post_remove_exceptions_lenny'] 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/post_remove_exceptions_lenny'] 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/post_remove_extras'] 0m16.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/post_remove_extras'] 0m16.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'dpkg', '--purge', 'openssh-client', 'libk5crypto3', 'libssl0.9.8', 'libpvm3', 'libkrb5-3', 'libgssapi-krb5-2', 'libedit2', 'pvm', 'libkrb5support0', 'libkeyutils1', 'libbsd0'] 0m17.0s DUMP: (Reading database ... 6261 files and directories currently installed.) Removing openssh-client ... Purging configuration files for openssh-client ... /usr/sbin/delgroup Removing libk5crypto3 ... Purging configuration files for libk5crypto3 ... Removing libssl0.9.8 ... Purging configuration files for libssl0.9.8 ... dpkg: warning: ignoring request to remove libpvm3 which isn't installed. Removing libkrb5-3 ... Purging configuration files for libkrb5-3 ... Removing libgssapi-krb5-2 ... Purging configuration files for libgssapi-krb5-2 ... Removing libedit2 ... Purging configuration files for libedit2 ... dpkg: warning: ignoring request to remove pvm which isn't installed. Removing libkrb5support0 ... Purging configuration files for libkrb5support0 ... Removing libkeyutils1 ... Purging configuration files for libkeyutils1 ... Removing libbsd0 ... Purging configuration files for libbsd0 ... 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'dpkg', '--purge', 'openssh-client', 'libk5crypto3', 'libssl0.9.8', 'libpvm3', 'libkrb5-3', 'libgssapi-krb5-2', 'libedit2', 'pvm', 'libkrb5support0', 'libkeyutils1', 'libbsd0'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'dpkg', '--purge', 'hmmer-pvm'] 0m17.0s DUMP: dpkg: warning: ignoring request to remove hmmer-pvm which isn't installed. 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'dpkg', '--purge', 'hmmer-pvm'] 0m17.0s INFO: Running scripts post_purge 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/post_purge_exceptions'] 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'tmp/scripts/post_purge_exceptions'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'dpkg', '--purge', '--pending'] 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'dpkg', '--purge', '--pending'] 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'dpkg', '--remove', '--pending'] 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'dpkg', '--remove', '--pending'] 0m17.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw2WzZd'] 0m17.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw2WzZd'] 0m18.1s DEBUG: No broken symlinks as far as we can find. 0m18.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'dpkg-divert', '--list'] 0m18.1s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m18.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'dpkg-divert', '--list'] 0m18.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'apt-get', 'clean'] 0m18.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'apt-get', 'clean'] 0m19.1s INFO: PASS: Installation and purging test. 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'umount', '/proc'] 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw2WzZd', 'umount', '/proc'] 0m19.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpw2WzZd'] 0m19.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpw2WzZd'] 0m19.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpw2WzZd 0m19.5s INFO: PASS: All tests. 0m19.5s INFO: piuparts run ends. ret=0 End: 2014-02-28 03:24:36 UTC