Start: 2014-05-05 20:58:27 UTC Package: libbio-graphics-perl Priority: optional Section: perl Installed-Size: 1880 Maintainer: Debian Med Packaging Team Architecture: all Version: 2.11-1 Depends: perl, bioperl (>= 1.6.0), libgd-gd2-perl (>= 2.3) Recommends: libbio-scf-perl, libfile-spec-perl, libgd-svg-perl, libstatistics-descriptive-perl Breaks: bioperl (<= 1.6.0) Filename: pool/main/libb/libbio-graphics-perl/libbio-graphics-perl_2.11-1_all.deb Size: 636860 MD5sum: 4fe3f7a8eb7b2009cd056db9361d4d72 SHA1: 1fbe7bb1f9aa22f242bf00c7f475ddfced6d647e SHA256: b4aa20586ff07285fac768ea43e78a8419a336e9b1430632b5bfdf2a40015224 Description: Generate GD images of Bio::Seq objects The Bio::Graphics::Panel class provides drawing and formatting services for any object that implements the Bio::SeqFeatureI interface, including Ace::Sequence::Feature, Das::Segment::Feature and Bio::DB::Graphics objects. It can be used to draw sequence annotations, physical (contig) maps, protein domains, or any other type of map in which a set of discrete ranges need to be laid out on the number line. Homepage: http://search.cpan.org/dist/Bio-Graphics/ Tag: devel::lang:perl, field::biology, field::biology:bioinformatics, implemented-in::perl, role::shared-lib Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 35m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt libbio-graphics-perl=2.11-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at http://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.58~201404301028~0.57-44-gb8096c5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt libbio-graphics-perl=2.11-1 0m0.0s INFO: Running on: Linux piu-slave-bm-a 3.2.0-4-amd64 #1 SMP Debian 3.2.57-3 x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpb8Q3gY 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpb8Q3gY 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.7s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.8s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ squeeze main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'apt-get', 'update'] 0m1.8s DUMP: Hit http://mirror.bm.debian.org squeeze Release.gpg Ign http://mirror.bm.debian.org/debian/ squeeze/main Translation-en Hit http://mirror.bm.debian.org squeeze Release Hit http://mirror.bm.debian.org squeeze/main amd64 Packages Reading package lists... 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'apt-get', 'update'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'apt-get', '-yf', 'dist-upgrade'] 0m2.1s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'apt-get', '-yf', 'dist-upgrade'] 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpb8Q3gY/tmp/scripts/ 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts-squeeze to /srv/piuparts.debian.org/tmp/tmpb8Q3gY/tmp/scripts/ 0m2.1s INFO: Running scripts post_setup 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/post_setup_experimental'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/post_setup_experimental'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/post_setup_forbid_home'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/post_setup_forbid_home'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m3.0s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 320 kB of archives. After this operation, 1532 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main adduser all 3.112+nmu2 [250 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main ucf all 3.0025+nmu1 [69.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 320 kB in 0s (14.6 MB/s) Selecting previously deselected package adduser. (Reading database ... 6135 files and directories currently installed.) Unpacking adduser (from .../adduser_3.112+nmu2_all.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu1_all.deb) ... Moving old data out of the way Setting up adduser (3.112+nmu2) ... Setting up ucf (3.0025+nmu1) ... 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'apt-get', 'clean'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'apt-get', 'clean'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'dpkg', '--get-selections', '*'] 0m3.5s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libgcc1 install liblocale-gettext-perl install liblzma2 install libncurses5 install libpam-modules install libpam-runtime install libpam0g install libreadline6 install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mount install ncurses-base install ncurses-bin install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'dpkg', '--get-selections', '*'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'dpkg-divert', '--list'] 0m3.6s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'dpkg-divert', '--list'] 0m3.6s INFO: apt-cache does not know about any of the requested packages 0m3.6s INFO: Running scripts pre_test 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/pre_test_root_password'] 0m3.6s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/pre_test_root_password'] 0m3.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY'] 0m3.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY'] 0m4.6s DEBUG: No broken symlinks as far as we can find. 0m4.6s INFO: Running scripts pre_install 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/pre_install_database-server'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/pre_install_database-server'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/pre_install_exceptions'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/pre_install_exceptions'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/pre_install_extras'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/pre_install_extras'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'apt-cache', 'show', 'libbio-graphics-perl=2.11-1'] 0m4.8s DUMP: Package: libbio-graphics-perl Priority: optional Section: perl Installed-Size: 1880 Maintainer: Debian Med Packaging Team Architecture: all Version: 2.11-1 Depends: perl, bioperl (>= 1.6.0), libgd-gd2-perl (>= 2.3) Recommends: libbio-scf-perl, libfile-spec-perl, libgd-svg-perl, libstatistics-descriptive-perl Breaks: bioperl (<= 1.6.0) Filename: pool/main/libb/libbio-graphics-perl/libbio-graphics-perl_2.11-1_all.deb Size: 636860 MD5sum: 4fe3f7a8eb7b2009cd056db9361d4d72 SHA1: 1fbe7bb1f9aa22f242bf00c7f475ddfced6d647e SHA256: b4aa20586ff07285fac768ea43e78a8419a336e9b1430632b5bfdf2a40015224 Description: Generate GD images of Bio::Seq objects The Bio::Graphics::Panel class provides drawing and formatting services for any object that implements the Bio::SeqFeatureI interface, including Ace::Sequence::Feature, Das::Segment::Feature and Bio::DB::Graphics objects. It can be used to draw sequence annotations, physical (contig) maps, protein domains, or any other type of map in which a set of discrete ranges need to be laid out on the number line. Homepage: http://search.cpan.org/dist/Bio-Graphics/ Tag: devel::lang:perl, field::biology, field::biology:bioinformatics, implemented-in::perl, role::shared-lib 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'apt-cache', 'show', 'libbio-graphics-perl=2.11-1'] 0m4.8s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed Depends: perl, bioperl (>= 1.6.0), libgd-gd2-perl (>= 2.3) 0m4.8s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp5MDIxK/piuparts-depends-dummy'] 0m4.8s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmp5MDIxK/piuparts-depends-dummy.deb'. 0m4.8s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp5MDIxK/piuparts-depends-dummy'] 0m4.8s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmp5MDIxK/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpb8Q3gY/tmp 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m4.8s DUMP: Selecting previously deselected package piuparts-depends-dummy. (Reading database ... 6258 files and directories currently installed.) Unpacking piuparts-depends-dummy (from tmp/piuparts-depends-dummy.deb) ... dpkg: dependency problems prevent configuration of piuparts-depends-dummy: piuparts-depends-dummy depends on perl; however: Package perl is not installed. piuparts-depends-dummy depends on bioperl (>= 1.6.0); however: Package bioperl is not installed. piuparts-depends-dummy depends on libgd-gd2-perl (>= 2.3); however: Package libgd-gd2-perl is not installed. dpkg: error processing piuparts-depends-dummy (--install): dependency problems - leaving unconfigured Errors were encountered while processing: piuparts-depends-dummy 0m4.8s DEBUG: Command failed (status=1), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'apt-get', '-yf', 'install'] 0m7.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Correcting dependencies... Done The following extra packages will be installed: bioperl fontconfig-config libdata-stag-perl libdb4.7 libexpat1 libfontconfig1 libfreetype6 libgd-gd2-perl libgd2-xpm libgdbm3 libio-string-perl libjpeg62 libpng12-0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxpm4 perl perl-modules ttf-dejavu-core Suggested packages: libmath-random-perl libxml-sax-expatxs-perl libgd-tools perl-doc libterm-readline-gnu-perl libterm-readline-perl-perl make Recommended packages: bioperl-run libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgraph-perl libgraphviz-perl libhtml-parser-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libstorable-perl libsvg-perl libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-libxml-perl libwww-perl perl-tk libxml-libxslt-perl libmldbm-perl netbase The following NEW packages will be installed: bioperl fontconfig-config libdata-stag-perl libdb4.7 libexpat1 libfontconfig1 libfreetype6 libgd-gd2-perl libgd2-xpm libgdbm3 libio-string-perl libjpeg62 libpng12-0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxpm4 perl perl-modules ttf-dejavu-core 0 upgraded, 22 newly installed, 0 to remove and 0 not upgraded. 1 not fully installed or removed. Need to get 19.9 MB of archives. After this operation, 68.3 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main perl-modules all 5.10.1-17squeeze6 [3482 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main libdb4.7 amd64 4.7.25-9 [662 kB] Get:3 http://mirror.bm.debian.org/debian/ squeeze/main libgdbm3 amd64 1.8.3-9 [46.2 kB] Get:4 http://mirror.bm.debian.org/debian/ squeeze/main perl amd64 5.10.1-17squeeze6 [4462 kB] Get:5 http://mirror.bm.debian.org/debian/ squeeze/main libio-string-perl all 1.08-2 [12.0 kB] Get:6 http://mirror.bm.debian.org/debian/ squeeze/main libdata-stag-perl all 0.11-2 [509 kB] Get:7 http://mirror.bm.debian.org/debian/ squeeze/main bioperl all 1.6.1-2 [6367 kB] Get:8 http://mirror.bm.debian.org/debian/ squeeze/main libexpat1 amd64 2.0.1-7+squeeze1 [138 kB] Get:9 http://mirror.bm.debian.org/debian/ squeeze/main libfreetype6 amd64 2.4.2-2.1+squeeze4 [377 kB] Get:10 http://mirror.bm.debian.org/debian/ squeeze/main ttf-dejavu-core all 2.31-1 [1451 kB] Get:11 http://mirror.bm.debian.org/debian/ squeeze/main fontconfig-config all 2.8.0-2.1 [217 kB] Get:12 http://mirror.bm.debian.org/debian/ squeeze/main libfontconfig1 amd64 2.8.0-2.1 [281 kB] Get:13 http://mirror.bm.debian.org/debian/ squeeze/main libjpeg62 amd64 6b1-1 [94.0 kB] Get:14 http://mirror.bm.debian.org/debian/ squeeze/main libpng12-0 amd64 1.2.44-1+squeeze4 [180 kB] Get:15 http://mirror.bm.debian.org/debian/ squeeze/main libxau6 amd64 1:1.0.6-1 [16.8 kB] Get:16 http://mirror.bm.debian.org/debian/ squeeze/main libxdmcp6 amd64 1:1.0.3-2 [19.3 kB] Get:17 http://mirror.bm.debian.org/debian/ squeeze/main libxcb1 amd64 1.6-1+squeeze1 [44.3 kB] Get:18 http://mirror.bm.debian.org/debian/ squeeze/main libx11-data all 2:1.3.3-4+squeeze1 [184 kB] Get:19 http://mirror.bm.debian.org/debian/ squeeze/main libx11-6 amd64 2:1.3.3-4+squeeze1 [847 kB] Get:20 http://mirror.bm.debian.org/debian/ squeeze/main libxpm4 amd64 1:3.5.8-1 [44.2 kB] Get:21 http://mirror.bm.debian.org/debian/ squeeze/main libgd2-xpm amd64 2.0.36~rc1~dfsg-5 [231 kB] Get:22 http://mirror.bm.debian.org/debian/ squeeze/main libgd-gd2-perl amd64 1:2.39-2+b1 [226 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.9 MB in 0s (42.7 MB/s) Selecting previously deselected package perl-modules. (Reading database ... 6258 files and directories currently installed.) Unpacking perl-modules (from .../perl-modules_5.10.1-17squeeze6_all.deb) ... Selecting previously deselected package libdb4.7. Unpacking libdb4.7 (from .../libdb4.7_4.7.25-9_amd64.deb) ... Selecting previously deselected package libgdbm3. Unpacking libgdbm3 (from .../libgdbm3_1.8.3-9_amd64.deb) ... Selecting previously deselected package perl. Unpacking perl (from .../perl_5.10.1-17squeeze6_amd64.deb) ... Selecting previously deselected package libio-string-perl. Unpacking libio-string-perl (from .../libio-string-perl_1.08-2_all.deb) ... Selecting previously deselected package libdata-stag-perl. Unpacking libdata-stag-perl (from .../libdata-stag-perl_0.11-2_all.deb) ... Selecting previously deselected package bioperl. Unpacking bioperl (from .../bioperl_1.6.1-2_all.deb) ... Selecting previously deselected package libexpat1. Unpacking libexpat1 (from .../libexpat1_2.0.1-7+squeeze1_amd64.deb) ... Selecting previously deselected package libfreetype6. Unpacking libfreetype6 (from .../libfreetype6_2.4.2-2.1+squeeze4_amd64.deb) ... Selecting previously deselected package ttf-dejavu-core. Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.31-1_all.deb) ... Selecting previously deselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.1_all.deb) ... Selecting previously deselected package libfontconfig1. Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.1_amd64.deb) ... Selecting previously deselected package libjpeg62. Unpacking libjpeg62 (from .../libjpeg62_6b1-1_amd64.deb) ... Selecting previously deselected package libpng12-0. Unpacking libpng12-0 (from .../libpng12-0_1.2.44-1+squeeze4_amd64.deb) ... Selecting previously deselected package libxau6. Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_amd64.deb) ... Selecting previously deselected package libxdmcp6. Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.0.3-2_amd64.deb) ... Selecting previously deselected package libxcb1. Unpacking libxcb1 (from .../libxcb1_1.6-1+squeeze1_amd64.deb) ... Selecting previously deselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.3.3-4+squeeze1_all.deb) ... Selecting previously deselected package libx11-6. Unpacking libx11-6 (from .../libx11-6_2%3a1.3.3-4+squeeze1_amd64.deb) ... Selecting previously deselected package libxpm4. Unpacking libxpm4 (from .../libxpm4_1%3a3.5.8-1_amd64.deb) ... Selecting previously deselected package libgd2-xpm. Unpacking libgd2-xpm (from .../libgd2-xpm_2.0.36~rc1~dfsg-5_amd64.deb) ... Selecting previously deselected package libgd-gd2-perl. Unpacking libgd-gd2-perl (from .../libgd-gd2-perl_1%3a2.39-2+b1_amd64.deb) ... Setting up libdb4.7 (4.7.25-9) ... Setting up libgdbm3 (1.8.3-9) ... Setting up libexpat1 (2.0.1-7+squeeze1) ... Setting up libfreetype6 (2.4.2-2.1+squeeze4) ... Setting up ttf-dejavu-core (2.31-1) ... Setting up fontconfig-config (2.8.0-2.1) ... Setting up libfontconfig1 (2.8.0-2.1) ... Setting up libjpeg62 (6b1-1) ... Setting up libpng12-0 (1.2.44-1+squeeze4) ... Setting up libxau6 (1:1.0.6-1) ... Setting up libxdmcp6 (1:1.0.3-2) ... Setting up libxcb1 (1.6-1+squeeze1) ... Setting up libx11-data (2:1.3.3-4+squeeze1) ... Setting up libx11-6 (2:1.3.3-4+squeeze1) ... Setting up libxpm4 (1:3.5.8-1) ... Setting up libgd2-xpm (2.0.36~rc1~dfsg-5) ... Setting up perl-modules (5.10.1-17squeeze6) ... Setting up perl (5.10.1-17squeeze6) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode. Setting up libio-string-perl (1.08-2) ... Setting up libdata-stag-perl (0.11-2) ... Setting up bioperl (1.6.1-2) ... Setting up libgd-gd2-perl (1:2.39-2+b1) ... Setting up piuparts-depends-dummy (0.invalid.0) ... 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'apt-get', '-yf', 'install'] 0m7.4s INFO: Installation of ['tmp/piuparts-depends-dummy.deb'] ok 0m7.4s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpb8Q3gY/tmp/piuparts-depends-dummy.deb 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m7.4s DUMP: piuparts-depends-dummy install ok installed 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m7.4s DUMP: (Reading database ... 10290 files and directories currently installed.) Removing piuparts-depends-dummy ... 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'apt-get', 'clean'] 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'apt-get', 'clean'] 0m8.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY'] 0m8.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY'] 0m9.7s ERROR: WARN: Broken symlinks: /etc/fonts/conf.d/30-defoma.conf -> /var/lib/defoma/fontconfig.d/fonts.conf 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'apt-cache', 'policy'] 0m9.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages release v=6.0.9,o=Debian,a=oldstable,n=squeeze,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'apt-cache', 'policy'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'apt-cache', 'policy', 'libbio-graphics-perl'] 0m9.7s DUMP: libbio-graphics-perl: Installed: (none) Candidate: 2.11-1 Version table: 2.11-1 0 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'apt-cache', 'policy', 'libbio-graphics-perl'] 0m9.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'apt-get', '-y', 'install', 'libbio-graphics-perl=2.11-1'] 0m10.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Recommended packages: libbio-scf-perl libgd-svg-perl libstatistics-descriptive-perl The following NEW packages will be installed: libbio-graphics-perl 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 637 kB of archives. After this operation, 1925 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main libbio-graphics-perl all 2.11-1 [637 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 637 kB in 0s (6637 kB/s) Selecting previously deselected package libbio-graphics-perl. (Reading database ... 10290 files and directories currently installed.) Unpacking libbio-graphics-perl (from .../libbio-graphics-perl_2.11-1_all.deb) ... Setting up libbio-graphics-perl (2.11-1) ... 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'apt-get', '-y', 'install', 'libbio-graphics-perl=2.11-1'] 0m10.5s INFO: Running scripts post_install 0m10.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY'] 0m10.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY'] 0m12.1s ERROR: WARN: Broken symlinks: /etc/fonts/conf.d/30-defoma.conf -> /var/lib/defoma/fontconfig.d/fonts.conf 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'dpkg', '--get-selections', '*'] 0m12.1s DUMP: adduser install apt install base-files install base-passwd install bash install bioperl install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install fontconfig-config install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libbio-graphics-perl install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdata-stag-perl install libdb4.7 install libdb4.8 install libexpat1 install libfontconfig1 install libfreetype6 install libgcc1 install libgd-gd2-perl install libgd2-xpm install libgdbm3 install libio-string-perl install libjpeg62 install liblocale-gettext-perl install liblzma2 install libncurses5 install libpam-modules install libpam-runtime install libpam0g install libpng12-0 install libreadline6 install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install libx11-6 install libx11-data install libxau6 install libxcb1 install libxdmcp6 install libxpm4 install login install lsb-base install mawk install mount install ncurses-base install ncurses-bin install passwd install perl install perl-base install perl-modules install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install ttf-dejavu-core install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'dpkg', '--get-selections', '*'] 0m13.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', '-ac'] 0m13.9s DUMP: debsums: no md5sums for mawk 0m13.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', '-ac'] 0m13.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m13.9s DUMP: 0.11.3~bpo70+1 0m13.9s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m13.9s INFO: Running adequate version 0.11.3~bpo70+1 now. 0m13.9s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'libbio-graphics-perl'] 0m14.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'libbio-graphics-perl'] 0m14.1s INFO: Running scripts pre_remove 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m14.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m14.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/pre_remove_exceptions'] 0m14.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/pre_remove_exceptions'] 0m14.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'apt-get', 'remove', 'libx11-data', 'libgd-gd2-perl', 'libpng12-0', 'libfreetype6', 'libgd2-xpm', 'bioperl', 'perl-modules', 'libxpm4', 'perl', 'libgdbm3', 'libxau6', 'libjpeg62', 'libx11-6', 'libdata-stag-perl', 'ttf-dejavu-core', 'fontconfig-config', 'libxcb1', 'libdb4.7', 'libio-string-perl', 'libexpat1', 'libxdmcp6', 'libfontconfig1', 'libbio-graphics-perl'] 0m15.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bioperl fontconfig-config libbio-graphics-perl libdata-stag-perl libdb4.7 libexpat1 libfontconfig1 libfreetype6 libgd-gd2-perl libgd2-xpm libgdbm3 libio-string-perl libjpeg62 libpng12-0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxpm4 perl perl-modules ttf-dejavu-core 0 upgraded, 0 newly installed, 23 to remove and 0 not upgraded. After this operation, 70.2 MB disk space will be freed. (Reading database ... 10507 files and directories currently installed.) Removing libbio-graphics-perl ... Removing bioperl ... Removing libgd-gd2-perl ... Removing libgd2-xpm ... Removing libfontconfig1 ... Removing fontconfig-config ... Removing libdata-stag-perl ... Removing libio-string-perl ... Removing libexpat1 ... Removing libfreetype6 ... Removing libjpeg62 ... Removing libpng12-0 ... Removing libxpm4 ... Removing libx11-6 ... Removing libx11-data ... Removing libxcb1 ... Removing libxau6 ... Removing libxdmcp6 ... Removing ttf-dejavu-core ... Removing perl ... Removing perl-modules ... Removing libdb4.7 ... Removing libgdbm3 ... 0m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'apt-get', 'remove', 'libx11-data', 'libgd-gd2-perl', 'libpng12-0', 'libfreetype6', 'libgd2-xpm', 'bioperl', 'perl-modules', 'libxpm4', 'perl', 'libgdbm3', 'libxau6', 'libjpeg62', 'libx11-6', 'libdata-stag-perl', 'ttf-dejavu-core', 'fontconfig-config', 'libxcb1', 'libdb4.7', 'libio-string-perl', 'libexpat1', 'libxdmcp6', 'libfontconfig1', 'libbio-graphics-perl'] 0m15.0s INFO: Running scripts post_remove 0m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/post_remove_exceptions_lenny'] 0m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/post_remove_exceptions_lenny'] 0m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/post_remove_extras'] 0m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/post_remove_extras'] 0m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'dpkg', '--purge', 'libx11-data', 'libgd-gd2-perl', 'libpng12-0', 'libfreetype6', 'libgd2-xpm', 'bioperl', 'perl-modules', 'libxpm4', 'perl', 'libgdbm3', 'libxau6', 'libjpeg62', 'libx11-6', 'libdata-stag-perl', 'ttf-dejavu-core', 'fontconfig-config', 'libxcb1', 'libdb4.7', 'libio-string-perl', 'libexpat1', 'libxdmcp6', 'libfontconfig1'] 0m15.2s DUMP: dpkg: warning: ignoring request to remove libx11-data which isn't installed. dpkg: warning: ignoring request to remove libgd-gd2-perl which isn't installed. (Reading database ... 6294 files and directories currently installed.) Removing libpng12-0 ... Purging configuration files for libpng12-0 ... Removing libfreetype6 ... Purging configuration files for libfreetype6 ... Removing libgd2-xpm ... Purging configuration files for libgd2-xpm ... dpkg: warning: ignoring request to remove bioperl which isn't installed. Removing perl-modules ... Purging configuration files for perl-modules ... Removing libxpm4 ... Purging configuration files for libxpm4 ... dpkg: warning: ignoring request to remove perl which isn't installed. Removing libgdbm3 ... Purging configuration files for libgdbm3 ... Removing libxau6 ... Purging configuration files for libxau6 ... dpkg: warning: ignoring request to remove libjpeg62 which isn't installed. Removing libx11-6 ... Purging configuration files for libx11-6 ... dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed. dpkg: warning: ignoring request to remove ttf-dejavu-core which isn't installed. Removing fontconfig-config ... Purging configuration files for fontconfig-config ... Removing libxcb1 ... Purging configuration files for libxcb1 ... dpkg: warning: ignoring request to remove libdb4.7 which isn't installed. dpkg: warning: ignoring request to remove libio-string-perl which isn't installed. Removing libexpat1 ... Purging configuration files for libexpat1 ... Removing libxdmcp6 ... Purging configuration files for libxdmcp6 ... Removing libfontconfig1 ... Purging configuration files for libfontconfig1 ... 0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'dpkg', '--purge', 'libx11-data', 'libgd-gd2-perl', 'libpng12-0', 'libfreetype6', 'libgd2-xpm', 'bioperl', 'perl-modules', 'libxpm4', 'perl', 'libgdbm3', 'libxau6', 'libjpeg62', 'libx11-6', 'libdata-stag-perl', 'ttf-dejavu-core', 'fontconfig-config', 'libxcb1', 'libdb4.7', 'libio-string-perl', 'libexpat1', 'libxdmcp6', 'libfontconfig1'] 0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'dpkg', '--purge', 'libbio-graphics-perl'] 0m15.2s DUMP: dpkg: warning: ignoring request to remove libbio-graphics-perl which isn't installed. 0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'dpkg', '--purge', 'libbio-graphics-perl'] 0m15.2s INFO: Running scripts post_purge 0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/post_purge_exceptions'] 0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'tmp/scripts/post_purge_exceptions'] 0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'dpkg', '--purge', '--pending'] 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'dpkg', '--purge', '--pending'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'dpkg', '--remove', '--pending'] 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'dpkg', '--remove', '--pending'] 0m15.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY'] 0m15.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY'] 0m16.3s DEBUG: No broken symlinks as far as we can find. 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'dpkg-divert', '--list'] 0m16.3s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'dpkg-divert', '--list'] 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'apt-get', 'clean'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'apt-get', 'clean'] 0m17.4s INFO: PASS: Installation and purging test. 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'umount', '/proc'] 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY', 'umount', '/proc'] 0m17.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY'] 0m17.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpb8Q3gY'] 0m17.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpb8Q3gY 0m17.8s INFO: PASS: All tests. 0m17.8s INFO: piuparts run ends. ret=0 End: 2014-05-05 20:58:45 UTC