Start: 2014-02-19 19:55:02 UTC Package: libhdf5-mpi-dev Priority: extra Section: libdevel Installed-Size: 48 Maintainer: Debian GIS Project Architecture: amd64 Source: hdf5 Version: 1.8.4-patch1-2 Depends: libhdf5-openmpi-dev, mpi-default-dev Filename: pool/main/h/hdf5/libhdf5-mpi-dev_1.8.4-patch1-2_amd64.deb Size: 18326 MD5sum: f64fd591fdf2a1e38860f4d02c6178e7 SHA1: 60a80170f0fabeef9822a5cee5dbd484cf7ab2d6 SHA256: 3ecc4e82838a97bc93809b50dad915a920159684ae9d550393a0c90e207b5d17 Description: Hierarchical Data Format 5 (HDF5) - development files - MPICH version HDF5 is a file format and library for storing scientific data. HDF5 was designed and implemented to address the deficiencies of HDF4.x. It has a more powerful and flexible data model, supports files larger than 2 GB, and supports parallel I/O. . This package depends on the default MPI version of HDF5 for each platform. Homepage: http://hdfgroup.org/HDF5/ Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 35m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt libhdf5-mpi-dev=1.8.4-patch1-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at http://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.57.1~201402172317~0.57-12-g4a108e2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt libhdf5-mpi-dev=1.8.4-patch1-2 0m0.0s INFO: Running on: Linux piu-slave-bm-a 3.2.0-4-amd64 #1 SMP Debian 3.2.54-2 x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpoLfxv_ 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpoLfxv_ 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.8s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ squeeze main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'apt-get', 'update'] 0m3.5s DUMP: Get:1 http://mirror.bm.debian.org squeeze Release.gpg [1672 B] Ign http://mirror.bm.debian.org/debian/ squeeze/main Translation-en Get:2 http://mirror.bm.debian.org squeeze Release [96.0 kB] Get:3 http://mirror.bm.debian.org squeeze/main amd64 Packages [8388 kB] Fetched 8486 kB in 0s (8781 kB/s) Reading package lists... 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'apt-get', 'update'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'apt-get', '-yf', 'dist-upgrade'] 0m4.6s DUMP: Reading package lists... Building dependency tree... The following packages will be upgraded: base-files gnupg gpgv tzdata 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3067 kB of archives. After this operation, 52.2 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main base-files amd64 6.0squeeze9 [76.1 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main gpgv amd64 1.4.10-4+squeeze4 [222 kB] Get:3 http://mirror.bm.debian.org/debian/ squeeze/main gnupg amd64 1.4.10-4+squeeze4 [2148 kB] Get:4 http://mirror.bm.debian.org/debian/ squeeze/main tzdata all 2013i-0squeeze1 [621 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3067 kB in 0s (48.2 MB/s) (Reading database ... 6155 files and directories currently installed.) Preparing to replace base-files 6.0squeeze8 (using .../base-files_6.0squeeze9_amd64.deb) ... Unpacking replacement base-files ... Setting up base-files (6.0squeeze9) ... Installing new version of config file /etc/debian_version ... (Reading database ... 6155 files and directories currently installed.) Preparing to replace gpgv 1.4.10-4+squeeze3 (using .../gpgv_1.4.10-4+squeeze4_amd64.deb) ... Unpacking replacement gpgv ... Setting up gpgv (1.4.10-4+squeeze4) ... (Reading database ... 6155 files and directories currently installed.) Preparing to replace gnupg 1.4.10-4+squeeze3 (using .../gnupg_1.4.10-4+squeeze4_amd64.deb) ... Unpacking replacement gnupg ... Setting up gnupg (1.4.10-4+squeeze4) ... (Reading database ... 6155 files and directories currently installed.) Preparing to replace tzdata 2013d-0squeeze1 (using .../tzdata_2013i-0squeeze1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2013i-0squeeze1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Feb 19 19:55:07 UTC 2014. Universal Time is now: Wed Feb 19 19:55:07 UTC 2014. Run 'dpkg-reconfigure tzdata' if you wish to change it. 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'apt-get', '-yf', 'dist-upgrade'] 0m4.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpoLfxv_/tmp/scripts/ 0m4.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts-squeeze to /srv/piuparts.debian.org/tmp/tmpoLfxv_/tmp/scripts/ 0m4.6s INFO: Running scripts post_setup 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/post_setup_experimental'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/post_setup_experimental'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/post_setup_forbid_home'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/post_setup_forbid_home'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' `/bin/sync' -> `true' 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m5.5s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 320 kB of archives. After this operation, 1532 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main adduser all 3.112+nmu2 [250 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main ucf all 3.0025+nmu1 [69.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 320 kB in 0s (20.8 MB/s) Selecting previously deselected package adduser. (Reading database ... 6135 files and directories currently installed.) Unpacking adduser (from .../adduser_3.112+nmu2_all.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu1_all.deb) ... Moving old data out of the way Setting up adduser (3.112+nmu2) ... Setting up ucf (3.0025+nmu1) ... 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'apt-get', 'clean'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'apt-get', 'clean'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'dpkg', '--get-selections', '*'] 0m6.0s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libgcc1 install liblocale-gettext-perl install liblzma2 install libncurses5 install libpam-modules install libpam-runtime install libpam0g install libreadline6 install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mount install ncurses-base install ncurses-bin install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'dpkg', '--get-selections', '*'] 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'dpkg-divert', '--list'] 0m6.0s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'dpkg-divert', '--list'] 0m6.0s INFO: apt-cache does not know about any of the requested packages 0m6.0s INFO: Running scripts pre_test 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/pre_test_root_password'] 0m6.0s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/pre_test_root_password'] 0m6.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpoLfxv_'] 0m6.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpoLfxv_'] 0m7.1s DEBUG: No broken symlinks as far as we can find. 0m7.1s INFO: Running scripts pre_install 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/pre_install_database-server'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/pre_install_database-server'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/pre_install_exceptions'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/pre_install_exceptions'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/pre_install_extras'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/pre_install_extras'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'apt-cache', 'show', 'libhdf5-mpi-dev=1.8.4-patch1-2'] 0m7.3s DUMP: Package: libhdf5-mpi-dev Priority: extra Section: libdevel Installed-Size: 48 Maintainer: Debian GIS Project Architecture: amd64 Source: hdf5 Version: 1.8.4-patch1-2 Depends: libhdf5-openmpi-dev, mpi-default-dev Filename: pool/main/h/hdf5/libhdf5-mpi-dev_1.8.4-patch1-2_amd64.deb Size: 18326 MD5sum: f64fd591fdf2a1e38860f4d02c6178e7 SHA1: 60a80170f0fabeef9822a5cee5dbd484cf7ab2d6 SHA256: 3ecc4e82838a97bc93809b50dad915a920159684ae9d550393a0c90e207b5d17 Description: Hierarchical Data Format 5 (HDF5) - development files - MPICH version HDF5 is a file format and library for storing scientific data. HDF5 was designed and implemented to address the deficiencies of HDF4.x. It has a more powerful and flexible data model, supports files larger than 2 GB, and supports parallel I/O. . This package depends on the default MPI version of HDF5 for each platform. Homepage: http://hdfgroup.org/HDF5/ 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'apt-cache', 'show', 'libhdf5-mpi-dev=1.8.4-patch1-2'] 0m7.3s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed Depends: libhdf5-openmpi-dev, mpi-default-dev 0m7.3s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp8tzwCw/piuparts-depends-dummy'] 0m7.3s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmp8tzwCw/piuparts-depends-dummy.deb'. 0m7.3s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp8tzwCw/piuparts-depends-dummy'] 0m7.3s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmp8tzwCw/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpoLfxv_/tmp 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m7.3s DUMP: Selecting previously deselected package piuparts-depends-dummy. (Reading database ... 6258 files and directories currently installed.) Unpacking piuparts-depends-dummy (from tmp/piuparts-depends-dummy.deb) ... dpkg: dependency problems prevent configuration of piuparts-depends-dummy: piuparts-depends-dummy depends on libhdf5-openmpi-dev; however: Package libhdf5-openmpi-dev is not installed. piuparts-depends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. dpkg: error processing piuparts-depends-dummy (--install): dependency problems - leaving unconfigured Errors were encountered while processing: piuparts-depends-dummy 0m7.3s DEBUG: Command failed (status=1), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'apt-get', '-yf', 'install'] 0m9.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Correcting dependencies... Done The following extra packages will be installed: libc-dev-bin libc6-dev libgfortran3 libhdf5-openmpi-1.8.4 libhdf5-openmpi-dev libibverbs-dev libibverbs1 libjpeg62 libjpeg62-dev libnuma1 libopenmpi-dev libopenmpi1.3 libtorque2 linux-libc-dev mpi-default-dev openmpi-common zlib1g-dev Suggested packages: glibc-doc libhdf5-doc Recommended packages: manpages-dev gcc c-compiler The following NEW packages will be installed: libc-dev-bin libc6-dev libgfortran3 libhdf5-openmpi-1.8.4 libhdf5-openmpi-dev libibverbs-dev libibverbs1 libjpeg62 libjpeg62-dev libnuma1 libopenmpi-dev libopenmpi1.3 libtorque2 linux-libc-dev mpi-default-dev openmpi-common zlib1g-dev 0 upgraded, 17 newly installed, 0 to remove and 0 not upgraded. 1 not fully installed or removed. Need to get 12.4 MB of archives. After this operation, 59.1 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main libgfortran3 amd64 4.4.5-8 [291 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main libibverbs1 amd64 1.1.3-2 [33.7 kB] Get:3 http://mirror.bm.debian.org/debian/ squeeze/main libnuma1 amd64 2.0.5-1 [26.7 kB] Get:4 http://mirror.bm.debian.org/debian/ squeeze/main libtorque2 amd64 2.4.8+dfsg-9squeeze3 [115 kB] Get:5 http://mirror.bm.debian.org/debian/ squeeze/main libopenmpi1.3 amd64 1.4.2-4 [1400 kB] Get:6 http://mirror.bm.debian.org/debian/ squeeze/main libhdf5-openmpi-1.8.4 amd64 1.8.4-patch1-2 [1357 kB] Get:7 http://mirror.bm.debian.org/debian/ squeeze/main libc-dev-bin amd64 2.11.3-4 [210 kB] Get:8 http://mirror.bm.debian.org/debian/ squeeze/main linux-libc-dev amd64 2.6.32-48squeeze4 [839 kB] Get:9 http://mirror.bm.debian.org/debian/ squeeze/main libc6-dev amd64 2.11.3-4 [2593 kB] Get:10 http://mirror.bm.debian.org/debian/ squeeze/main zlib1g-dev amd64 1:1.2.3.4.dfsg-3 [192 kB] Get:11 http://mirror.bm.debian.org/debian/ squeeze/main libjpeg62 amd64 6b1-1 [94.0 kB] Get:12 http://mirror.bm.debian.org/debian/ squeeze/main libjpeg62-dev amd64 6b1-1 [201 kB] Get:13 http://mirror.bm.debian.org/debian/ squeeze/main openmpi-common all 1.4.2-4 [89.5 kB] Get:14 http://mirror.bm.debian.org/debian/ squeeze/main libibverbs-dev amd64 1.1.3-2 [83.3 kB] Get:15 http://mirror.bm.debian.org/debian/ squeeze/main libopenmpi-dev amd64 1.4.2-4 [2726 kB] Get:16 http://mirror.bm.debian.org/debian/ squeeze/main libhdf5-openmpi-dev amd64 1.8.4-patch1-2 [2190 kB] Get:17 http://mirror.bm.debian.org/debian/ squeeze/main mpi-default-dev amd64 0.6 [3202 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.4 MB in 0s (15.2 MB/s) Selecting previously deselected package libgfortran3. (Reading database ... 6258 files and directories currently installed.) Unpacking libgfortran3 (from .../libgfortran3_4.4.5-8_amd64.deb) ... Selecting previously deselected package libibverbs1. Unpacking libibverbs1 (from .../libibverbs1_1.1.3-2_amd64.deb) ... Selecting previously deselected package libnuma1. Unpacking libnuma1 (from .../libnuma1_2.0.5-1_amd64.deb) ... Selecting previously deselected package libtorque2. Unpacking libtorque2 (from .../libtorque2_2.4.8+dfsg-9squeeze3_amd64.deb) ... Selecting previously deselected package libopenmpi1.3. Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.2-4_amd64.deb) ... Selecting previously deselected package libhdf5-openmpi-1.8.4. Unpacking libhdf5-openmpi-1.8.4 (from .../libhdf5-openmpi-1.8.4_1.8.4-patch1-2_amd64.deb) ... Selecting previously deselected package libc-dev-bin. Unpacking libc-dev-bin (from .../libc-dev-bin_2.11.3-4_amd64.deb) ... Selecting previously deselected package linux-libc-dev. Unpacking linux-libc-dev (from .../linux-libc-dev_2.6.32-48squeeze4_amd64.deb) ... Selecting previously deselected package libc6-dev. Unpacking libc6-dev (from .../libc6-dev_2.11.3-4_amd64.deb) ... Selecting previously deselected package zlib1g-dev. Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_amd64.deb) ... Selecting previously deselected package libjpeg62. Unpacking libjpeg62 (from .../libjpeg62_6b1-1_amd64.deb) ... Selecting previously deselected package libjpeg62-dev. Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b1-1_amd64.deb) ... Selecting previously deselected package openmpi-common. Unpacking openmpi-common (from .../openmpi-common_1.4.2-4_all.deb) ... Selecting previously deselected package libibverbs-dev. Unpacking libibverbs-dev (from .../libibverbs-dev_1.1.3-2_amd64.deb) ... Selecting previously deselected package libopenmpi-dev. Unpacking libopenmpi-dev (from .../libopenmpi-dev_1.4.2-4_amd64.deb) ... Selecting previously deselected package libhdf5-openmpi-dev. Unpacking libhdf5-openmpi-dev (from .../libhdf5-openmpi-dev_1.8.4-patch1-2_amd64.deb) ... Selecting previously deselected package mpi-default-dev. Unpacking mpi-default-dev (from .../mpi-default-dev_0.6_amd64.deb) ... Setting up libgfortran3 (4.4.5-8) ... Setting up libibverbs1 (1.1.3-2) ... Setting up libnuma1 (2.0.5-1) ... Setting up libtorque2 (2.4.8+dfsg-9squeeze3) ... Setting up libopenmpi1.3 (1.4.2-4) ... Setting up libhdf5-openmpi-1.8.4 (1.8.4-patch1-2) ... Setting up libc-dev-bin (2.11.3-4) ... Setting up linux-libc-dev (2.6.32-48squeeze4) ... Setting up libc6-dev (2.11.3-4) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ... Setting up libjpeg62 (6b1-1) ... Setting up libjpeg62-dev (6b1-1) ... Setting up openmpi-common (1.4.2-4) ... Setting up libibverbs-dev (1.1.3-2) ... Setting up libopenmpi-dev (1.4.2-4) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode. Setting up libhdf5-openmpi-dev (1.8.4-patch1-2) ... Setting up mpi-default-dev (0.6) ... Setting up piuparts-depends-dummy (0.invalid.0) ... 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'apt-get', '-yf', 'install'] 0m9.6s INFO: Installation of ['tmp/piuparts-depends-dummy.deb'] ok 0m9.6s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpoLfxv_/tmp/piuparts-depends-dummy.deb 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m9.6s DUMP: piuparts-depends-dummy install ok installed 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m9.6s DUMP: (Reading database ... 8379 files and directories currently installed.) Removing piuparts-depends-dummy ... 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'apt-get', 'clean'] 0m9.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'apt-get', 'clean'] 0m10.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpoLfxv_'] 0m10.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpoLfxv_'] 0m11.5s DEBUG: No broken symlinks as far as we can find. 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'apt-cache', 'policy'] 0m11.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages release v=6.0.9,o=Debian,a=oldstable,n=squeeze,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'apt-cache', 'policy'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'apt-cache', 'policy', 'libhdf5-mpi-dev'] 0m11.6s DUMP: libhdf5-mpi-dev: Installed: (none) Candidate: 1.8.4-patch1-2 Version table: 1.8.4-patch1-2 0 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'apt-cache', 'policy', 'libhdf5-mpi-dev'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'apt-get', '-y', 'install', 'libhdf5-mpi-dev=1.8.4-patch1-2'] 0m12.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: libhdf5-mpi-dev 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 18.3 kB of archives. After this operation, 49.2 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main libhdf5-mpi-dev amd64 1.8.4-patch1-2 [18.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.3 kB in 0s (286 kB/s) Selecting previously deselected package libhdf5-mpi-dev. (Reading database ... 8379 files and directories currently installed.) Unpacking libhdf5-mpi-dev (from .../libhdf5-mpi-dev_1.8.4-patch1-2_amd64.deb) ... Setting up libhdf5-mpi-dev (1.8.4-patch1-2) ... 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'apt-get', '-y', 'install', 'libhdf5-mpi-dev=1.8.4-patch1-2'] 0m12.1s INFO: Running scripts post_install 0m12.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpoLfxv_'] 0m12.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpoLfxv_'] 0m13.5s DEBUG: No broken symlinks as far as we can find. 0m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'dpkg', '--get-selections', '*'] 0m13.5s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libblkid1 install libbz2-1.0 install libc-bin install libc-dev-bin install libc6 install libc6-dev install libcomerr2 install libdb4.8 install libgcc1 install libgfortran3 install libhdf5-mpi-dev install libhdf5-openmpi-1.8.4 install libhdf5-openmpi-dev install libibverbs-dev install libibverbs1 install libjpeg62 install libjpeg62-dev install liblocale-gettext-perl install liblzma2 install libncurses5 install libnuma1 install libopenmpi-dev install libopenmpi1.3 install libpam-modules install libpam-runtime install libpam0g install libreadline6 install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libtorque2 install libusb-0.1-4 install libuuid1 install linux-libc-dev install login install lsb-base install mawk install mount install mpi-default-dev install ncurses-base install ncurses-bin install openmpi-common install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install zlib1g-dev install 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'dpkg', '--get-selections', '*'] 0m14.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', '-ac'] 0m15.0s DUMP: debsums: no md5sums for mawk 0m15.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', '-ac'] 0m15.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m15.0s DUMP: 0.11.3~bpo70+1 0m15.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m15.0s INFO: Running adequate version 0.11.3~bpo70+1 now. 0m15.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'libhdf5-mpi-dev'] 0m15.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'libhdf5-mpi-dev'] 0m15.1s INFO: Running scripts pre_remove 0m15.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m15.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m15.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/pre_remove_exceptions'] 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/pre_remove_exceptions'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'apt-get', 'remove', 'libibverbs1', 'openmpi-common', 'mpi-default-dev', 'libjpeg62', 'libopenmpi-dev', 'libjpeg62-dev', 'libhdf5-openmpi-1.8.4', 'libopenmpi1.3', 'libc6-dev', 'libibverbs-dev', 'libtorque2', 'libc-dev-bin', 'linux-libc-dev', 'libhdf5-openmpi-dev', 'zlib1g-dev', 'libnuma1', 'libgfortran3', 'libhdf5-mpi-dev'] 0m15.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libc-dev-bin libc6-dev libgfortran3 libhdf5-mpi-dev libhdf5-openmpi-1.8.4 libhdf5-openmpi-dev libibverbs-dev libibverbs1 libjpeg62 libjpeg62-dev libnuma1 libopenmpi-dev libopenmpi1.3 libtorque2 linux-libc-dev mpi-default-dev openmpi-common zlib1g-dev 0 upgraded, 0 newly installed, 18 to remove and 0 not upgraded. After this operation, 59.1 MB disk space will be freed. (Reading database ... 8384 files and directories currently installed.) Removing libhdf5-mpi-dev ... Removing libhdf5-openmpi-dev ... Removing zlib1g-dev ... Removing libjpeg62-dev ... Removing libc6-dev ... Removing libc-dev-bin ... Removing mpi-default-dev ... Removing libopenmpi-dev ... Removing libhdf5-openmpi-1.8.4 ... Removing libopenmpi1.3 ... Removing libgfortran3 ... Removing libibverbs-dev ... Removing libibverbs1 ... Removing libjpeg62 ... Removing libnuma1 ... Removing libtorque2 ... Removing linux-libc-dev ... Removing openmpi-common ... 0m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'apt-get', 'remove', 'libibverbs1', 'openmpi-common', 'mpi-default-dev', 'libjpeg62', 'libopenmpi-dev', 'libjpeg62-dev', 'libhdf5-openmpi-1.8.4', 'libopenmpi1.3', 'libc6-dev', 'libibverbs-dev', 'libtorque2', 'libc-dev-bin', 'linux-libc-dev', 'libhdf5-openmpi-dev', 'zlib1g-dev', 'libnuma1', 'libgfortran3', 'libhdf5-mpi-dev'] 0m15.9s INFO: Running scripts post_remove 0m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/post_remove_exceptions_lenny'] 0m15.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/post_remove_exceptions_lenny'] 0m15.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/post_remove_extras'] 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/post_remove_extras'] 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'dpkg', '--purge', 'libibverbs1', 'openmpi-common', 'mpi-default-dev', 'libjpeg62', 'libopenmpi-dev', 'libjpeg62-dev', 'libhdf5-openmpi-1.8.4', 'libopenmpi1.3', 'libc6-dev', 'libibverbs-dev', 'libtorque2', 'libc-dev-bin', 'linux-libc-dev', 'libhdf5-openmpi-dev', 'zlib1g-dev', 'libnuma1', 'libgfortran3'] 0m16.0s DUMP: (Reading database ... 6258 files and directories currently installed.) Removing libibverbs1 ... Purging configuration files for libibverbs1 ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed. dpkg: warning: ignoring request to remove mpi-default-dev which isn't installed. dpkg: warning: ignoring request to remove libjpeg62 which isn't installed. dpkg: warning: ignoring request to remove libopenmpi-dev which isn't installed. dpkg: warning: ignoring request to remove libjpeg62-dev which isn't installed. Removing libhdf5-openmpi-1.8.4 ... Purging configuration files for libhdf5-openmpi-1.8.4 ... Removing libopenmpi1.3 ... Purging configuration files for libopenmpi1.3 ... dpkg: warning: ignoring request to remove libc6-dev which isn't installed. dpkg: warning: ignoring request to remove libibverbs-dev which isn't installed. Removing libtorque2 ... Purging configuration files for libtorque2 ... dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed. dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed. dpkg: warning: ignoring request to remove libhdf5-openmpi-dev which isn't installed. dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed. Removing libnuma1 ... Purging configuration files for libnuma1 ... Removing libgfortran3 ... Purging configuration files for libgfortran3 ... 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'dpkg', '--purge', 'libibverbs1', 'openmpi-common', 'mpi-default-dev', 'libjpeg62', 'libopenmpi-dev', 'libjpeg62-dev', 'libhdf5-openmpi-1.8.4', 'libopenmpi1.3', 'libc6-dev', 'libibverbs-dev', 'libtorque2', 'libc-dev-bin', 'linux-libc-dev', 'libhdf5-openmpi-dev', 'zlib1g-dev', 'libnuma1', 'libgfortran3'] 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'dpkg', '--purge', 'libhdf5-mpi-dev'] 0m16.0s DUMP: dpkg: warning: ignoring request to remove libhdf5-mpi-dev which isn't installed. 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'dpkg', '--purge', 'libhdf5-mpi-dev'] 0m16.0s INFO: Running scripts post_purge 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/post_purge_exceptions'] 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'tmp/scripts/post_purge_exceptions'] 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'dpkg', '--purge', '--pending'] 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'dpkg', '--purge', '--pending'] 0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'dpkg', '--remove', '--pending'] 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'dpkg', '--remove', '--pending'] 0m16.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpoLfxv_'] 0m16.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpoLfxv_'] 0m17.1s DEBUG: No broken symlinks as far as we can find. 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'dpkg-divert', '--list'] 0m17.1s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'dpkg-divert', '--list'] 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'apt-get', 'clean'] 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'apt-get', 'clean'] 0m18.2s INFO: PASS: Installation and purging test. 0m18.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'umount', '/proc'] 0m18.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpoLfxv_', 'umount', '/proc'] 0m18.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpoLfxv_'] 0m18.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpoLfxv_'] 0m18.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpoLfxv_ 0m18.6s INFO: PASS: All tests. 0m18.6s INFO: piuparts run ends. ret=0 End: 2014-02-19 19:55:21 UTC