Start: 2014-03-30 09:08:51 UTC Package: libmumps-ptscotch-4.9.2 Priority: extra Section: libs Installed-Size: 5232 Maintainer: Adam C. Powell, IV Architecture: amd64 Source: mumps Version: 4.9.2.dfsg-4 Depends: libblacs-mpi1, libblas3gf | libblas.so.3gf | libatlas3gf-base, libc6 (>= 2.3.2), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3), libopenmpi1.3, libptscotch-5.1, libscalapack-mpi1 (>= 1.8.0) Filename: pool/main/m/mumps/libmumps-ptscotch-4.9.2_4.9.2.dfsg-4_amd64.deb Size: 2213228 MD5sum: 0623d7dc1a3981156eea28a7d3f439e7 SHA1: 070df97ef846a69d8b6f8c88c036250ee8aa2990 SHA256: b263c7cfcb15917bba9c62e51c5bcc37903d6d6ff1daf49eaeb06508bdf56113 Description: Direct linear systems solver - PTScotch-version shared libraries MUMPS implements a direct solver for large sparse linear systems, with a particular focus on symmetric positive definite matrices. It can operate on distributed matrices e.g. over a cluster. It has Fortran and C interfaces, and can interface with ordering tools such as Scotch. . This package is built with ptscotch support. Homepage: http://mumps.enseeiht.fr/ Tag: role::shared-lib Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 35m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt libmumps-ptscotch-4.9.2=4.9.2.dfsg-4 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at http://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.57.1~201403012113~0.57-23-gfd8571c starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt libmumps-ptscotch-4.9.2=4.9.2.dfsg-4 0m0.0s INFO: Running on: Linux piu-slave-bm-a 3.2.0-4-amd64 #1 SMP Debian 3.2.54-2 x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpMQcBra 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpMQcBra 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpMQcBra', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpMQcBra', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.8s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ squeeze main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'apt-get', 'update'] 0m1.8s DUMP: Hit http://mirror.bm.debian.org squeeze Release.gpg Ign http://mirror.bm.debian.org/debian/ squeeze/main Translation-en Hit http://mirror.bm.debian.org squeeze Release Hit http://mirror.bm.debian.org squeeze/main amd64 Packages Reading package lists... 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'apt-get', 'update'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpMQcBra/tmp/scripts/ 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts-squeeze to /srv/piuparts.debian.org/tmp/tmpMQcBra/tmp/scripts/ 0m2.2s INFO: Running scripts post_setup 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/post_setup_experimental'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/post_setup_experimental'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/post_setup_forbid_home'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/post_setup_forbid_home'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m3.2s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 320 kB of archives. After this operation, 1532 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main adduser all 3.112+nmu2 [250 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main ucf all 3.0025+nmu1 [69.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 320 kB in 0s (10.3 MB/s) Selecting previously deselected package adduser. (Reading database ... 6135 files and directories currently installed.) Unpacking adduser (from .../adduser_3.112+nmu2_all.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu1_all.deb) ... Moving old data out of the way Setting up adduser (3.112+nmu2) ... Setting up ucf (3.0025+nmu1) ... 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'apt-get', 'clean'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'apt-get', 'clean'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'dpkg', '--get-selections', '*'] 0m3.7s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libgcc1 install liblocale-gettext-perl install liblzma2 install libncurses5 install libpam-modules install libpam-runtime install libpam0g install libreadline6 install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mount install ncurses-base install ncurses-bin install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'dpkg', '--get-selections', '*'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'dpkg-divert', '--list'] 0m3.7s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'dpkg-divert', '--list'] 0m3.7s INFO: apt-cache does not know about any of the requested packages 0m3.7s INFO: Running scripts pre_test 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/pre_test_root_password'] 0m3.7s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/pre_test_root_password'] 0m3.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpMQcBra'] 0m4.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpMQcBra'] 0m4.8s DEBUG: No broken symlinks as far as we can find. 0m4.8s INFO: Running scripts pre_install 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/pre_install_database-server'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/pre_install_database-server'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/pre_install_exceptions'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/pre_install_exceptions'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/pre_install_extras'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/pre_install_extras'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'apt-cache', 'show', 'libmumps-ptscotch-4.9.2=4.9.2.dfsg-4'] 0m4.9s DUMP: Package: libmumps-ptscotch-4.9.2 Priority: extra Section: libs Installed-Size: 5232 Maintainer: Adam C. Powell, IV Architecture: amd64 Source: mumps Version: 4.9.2.dfsg-4 Depends: libblacs-mpi1, libblas3gf | libblas.so.3gf | libatlas3gf-base, libc6 (>= 2.3.2), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3), libopenmpi1.3, libptscotch-5.1, libscalapack-mpi1 (>= 1.8.0) Filename: pool/main/m/mumps/libmumps-ptscotch-4.9.2_4.9.2.dfsg-4_amd64.deb Size: 2213228 MD5sum: 0623d7dc1a3981156eea28a7d3f439e7 SHA1: 070df97ef846a69d8b6f8c88c036250ee8aa2990 SHA256: b263c7cfcb15917bba9c62e51c5bcc37903d6d6ff1daf49eaeb06508bdf56113 Description: Direct linear systems solver - PTScotch-version shared libraries MUMPS implements a direct solver for large sparse linear systems, with a particular focus on symmetric positive definite matrices. It can operate on distributed matrices e.g. over a cluster. It has Fortran and C interfaces, and can interface with ordering tools such as Scotch. . This package is built with ptscotch support. Homepage: http://mumps.enseeiht.fr/ Tag: role::shared-lib 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'apt-cache', 'show', 'libmumps-ptscotch-4.9.2=4.9.2.dfsg-4'] 0m4.9s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed Depends: libblacs-mpi1, libblas3gf | libblas.so.3gf | libatlas3gf-base, libc6 (>= 2.3.2), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3), libopenmpi1.3, libptscotch-5.1, libscalapack-mpi1 (>= 1.8.0) 0m4.9s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp8kfX8L/piuparts-depends-dummy'] 0m4.9s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmp8kfX8L/piuparts-depends-dummy.deb'. 0m4.9s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp8kfX8L/piuparts-depends-dummy'] 0m4.9s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmp8kfX8L/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpMQcBra/tmp 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m5.0s DUMP: Selecting previously deselected package piuparts-depends-dummy. (Reading database ... 6258 files and directories currently installed.) Unpacking piuparts-depends-dummy (from tmp/piuparts-depends-dummy.deb) ... dpkg: dependency problems prevent configuration of piuparts-depends-dummy: piuparts-depends-dummy depends on libblacs-mpi1; however: Package libblacs-mpi1 is not installed. piuparts-depends-dummy depends on libblas3gf | libblas.so.3gf | libatlas3gf-base; however: Package libblas3gf is not installed. Package libblas.so.3gf is not installed. Package libatlas3gf-base is not installed. piuparts-depends-dummy depends on libgfortran3 (>= 4.3); however: Package libgfortran3 is not installed. piuparts-depends-dummy depends on libopenmpi1.3; however: Package libopenmpi1.3 is not installed. piuparts-depends-dummy depends on libptscotch-5.1; however: Package libptscotch-5.1 is not installed. piuparts-depends-dummy depends on libscalapack-mpi1 (>= 1.8.0); however: Package libscalapack-mpi1 is not installed. dpkg: error processing piuparts-depends-dummy (--install): dependency problems - leaving unconfigured Errors were encountered while processing: piuparts-depends-dummy 0m5.0s DEBUG: Command failed (status=1), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'apt-get', '-yf', 'install'] 0m7.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Correcting dependencies... Done The following extra packages will be installed: libblacs-mpi1 libblas3gf libgfortran3 libibverbs1 liblapack3gf libnuma1 libopenmpi1.3 libptscotch-5.1 libscalapack-mpi1 libscotch-5.1 libtorque2 mpi-default-bin openmpi-bin openmpi-common Suggested packages: scalapack-doc gfortran Recommended packages: openmpi-checkpoint The following NEW packages will be installed: libblacs-mpi1 libblas3gf libgfortran3 libibverbs1 liblapack3gf libnuma1 libopenmpi1.3 libptscotch-5.1 libscalapack-mpi1 libscotch-5.1 libtorque2 mpi-default-bin openmpi-bin openmpi-common 0 upgraded, 14 newly installed, 0 to remove and 0 not upgraded. 1 not fully installed or removed. Need to get 10.5 MB of archives. After this operation, 25.0 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main libgfortran3 amd64 4.4.5-8 [291 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main libibverbs1 amd64 1.1.3-2 [33.7 kB] Get:3 http://mirror.bm.debian.org/debian/ squeeze/main libnuma1 amd64 2.0.5-1 [26.7 kB] Get:4 http://mirror.bm.debian.org/debian/ squeeze/main libtorque2 amd64 2.4.8+dfsg-9squeeze3 [115 kB] Get:5 http://mirror.bm.debian.org/debian/ squeeze/main libopenmpi1.3 amd64 1.4.2-4 [1400 kB] Get:6 http://mirror.bm.debian.org/debian/ squeeze/main openmpi-common all 1.4.2-4 [89.5 kB] Get:7 http://mirror.bm.debian.org/debian/ squeeze/main openmpi-bin amd64 1.4.2-4 [165 kB] Get:8 http://mirror.bm.debian.org/debian/ squeeze/main mpi-default-bin amd64 0.6 [2610 B] Get:9 http://mirror.bm.debian.org/debian/ squeeze/main libblacs-mpi1 amd64 1.1-28.2+b1 [63.5 kB] Get:10 http://mirror.bm.debian.org/debian/ squeeze/main libblas3gf amd64 1.2-8 [229 kB] Get:11 http://mirror.bm.debian.org/debian/ squeeze/main libscotch-5.1 amd64 5.1.8a.dfsg-2 [198 kB] Get:12 http://mirror.bm.debian.org/debian/ squeeze/main libptscotch-5.1 amd64 5.1.8a.dfsg-2 [147 kB] Get:13 http://mirror.bm.debian.org/debian/ squeeze/main liblapack3gf amd64 3.2.1-8 [4434 kB] Get:14 http://mirror.bm.debian.org/debian/ squeeze/main libscalapack-mpi1 amd64 1.8.0-6+b1 [3312 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 10.5 MB in 0s (17.7 MB/s) Selecting previously deselected package libgfortran3. (Reading database ... 6258 files and directories currently installed.) Unpacking libgfortran3 (from .../libgfortran3_4.4.5-8_amd64.deb) ... Selecting previously deselected package libibverbs1. Unpacking libibverbs1 (from .../libibverbs1_1.1.3-2_amd64.deb) ... Selecting previously deselected package libnuma1. Unpacking libnuma1 (from .../libnuma1_2.0.5-1_amd64.deb) ... Selecting previously deselected package libtorque2. Unpacking libtorque2 (from .../libtorque2_2.4.8+dfsg-9squeeze3_amd64.deb) ... Selecting previously deselected package libopenmpi1.3. Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.2-4_amd64.deb) ... Selecting previously deselected package openmpi-common. Unpacking openmpi-common (from .../openmpi-common_1.4.2-4_all.deb) ... Selecting previously deselected package openmpi-bin. Unpacking openmpi-bin (from .../openmpi-bin_1.4.2-4_amd64.deb) ... Selecting previously deselected package mpi-default-bin. Unpacking mpi-default-bin (from .../mpi-default-bin_0.6_amd64.deb) ... Selecting previously deselected package libblacs-mpi1. Unpacking libblacs-mpi1 (from .../libblacs-mpi1_1.1-28.2+b1_amd64.deb) ... Selecting previously deselected package libblas3gf. Unpacking libblas3gf (from .../libblas3gf_1.2-8_amd64.deb) ... Selecting previously deselected package libscotch-5.1. Unpacking libscotch-5.1 (from .../libscotch-5.1_5.1.8a.dfsg-2_amd64.deb) ... Selecting previously deselected package libptscotch-5.1. Unpacking libptscotch-5.1 (from .../libptscotch-5.1_5.1.8a.dfsg-2_amd64.deb) ... Selecting previously deselected package liblapack3gf. Unpacking liblapack3gf (from .../liblapack3gf_3.2.1-8_amd64.deb) ... Selecting previously deselected package libscalapack-mpi1. Unpacking libscalapack-mpi1 (from .../libscalapack-mpi1_1.8.0-6+b1_amd64.deb) ... Setting up libgfortran3 (4.4.5-8) ... Setting up libibverbs1 (1.1.3-2) ... Setting up libnuma1 (2.0.5-1) ... Setting up libtorque2 (2.4.8+dfsg-9squeeze3) ... Setting up libopenmpi1.3 (1.4.2-4) ... Setting up openmpi-common (1.4.2-4) ... Setting up openmpi-bin (1.4.2-4) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode. Setting up mpi-default-bin (0.6) ... Setting up libblacs-mpi1 (1.1-28.2+b1) ... Setting up libblas3gf (1.2-8) ... update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode. Setting up libscotch-5.1 (5.1.8a.dfsg-2) ... Setting up libptscotch-5.1 (5.1.8a.dfsg-2) ... Setting up liblapack3gf (3.2.1-8) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode. Setting up libscalapack-mpi1 (1.8.0-6+b1) ... Setting up piuparts-depends-dummy (0.invalid.0) ... 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'apt-get', '-yf', 'install'] 0m7.1s INFO: Installation of ['tmp/piuparts-depends-dummy.deb'] ok 0m7.1s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpMQcBra/tmp/piuparts-depends-dummy.deb 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m7.2s DUMP: piuparts-depends-dummy install ok installed 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m7.2s DUMP: (Reading database ... 6568 files and directories currently installed.) Removing piuparts-depends-dummy ... 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'apt-get', 'clean'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'apt-get', 'clean'] 0m7.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpMQcBra'] 0m8.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpMQcBra'] 0m8.8s DEBUG: No broken symlinks as far as we can find. 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'apt-cache', 'policy'] 0m8.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages release v=6.0.9,o=Debian,a=oldstable,n=squeeze,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'apt-cache', 'policy'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'apt-cache', 'policy', 'libmumps-ptscotch-4.9.2'] 0m8.8s DUMP: libmumps-ptscotch-4.9.2: Installed: (none) Candidate: 4.9.2.dfsg-4 Version table: 4.9.2.dfsg-4 0 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'apt-cache', 'policy', 'libmumps-ptscotch-4.9.2'] 0m8.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'apt-get', '-y', 'install', 'libmumps-ptscotch-4.9.2=4.9.2.dfsg-4'] 0m9.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: libmumps-ptscotch-4.9.2 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 2213 kB of archives. After this operation, 5358 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main libmumps-ptscotch-4.9.2 amd64 4.9.2.dfsg-4 [2213 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2213 kB in 0s (12.3 MB/s) Selecting previously deselected package libmumps-ptscotch-4.9.2. (Reading database ... 6568 files and directories currently installed.) Unpacking libmumps-ptscotch-4.9.2 (from .../libmumps-ptscotch-4.9.2_4.9.2.dfsg-4_amd64.deb) ... Setting up libmumps-ptscotch-4.9.2 (4.9.2.dfsg-4) ... 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'apt-get', '-y', 'install', 'libmumps-ptscotch-4.9.2=4.9.2.dfsg-4'] 0m9.6s INFO: Running scripts post_install 0m9.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpMQcBra'] 0m9.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpMQcBra'] 0m10.7s DEBUG: No broken symlinks as far as we can find. 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'dpkg', '--get-selections', '*'] 0m10.7s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libblacs-mpi1 install libblas3gf install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libgcc1 install libgfortran3 install libibverbs1 install liblapack3gf install liblocale-gettext-perl install liblzma2 install libmumps-ptscotch-4.9.2 install libncurses5 install libnuma1 install libopenmpi1.3 install libpam-modules install libpam-runtime install libpam0g install libptscotch-5.1 install libreadline6 install libscalapack-mpi1 install libscotch-5.1 install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libtorque2 install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mount install mpi-default-bin install ncurses-base install ncurses-bin install openmpi-bin install openmpi-common install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'dpkg', '--get-selections', '*'] 0m11.3s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpMQcBra', '-ac'] 0m12.0s DUMP: debsums: no md5sums for mawk 0m12.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpMQcBra', '-ac'] 0m12.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m12.0s DUMP: 0.11.3~bpo70+1 0m12.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m12.0s INFO: Running adequate version 0.11.3~bpo70+1 now. 0m12.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'libmumps-ptscotch-4.9.2'] 0m12.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'libmumps-ptscotch-4.9.2'] 0m12.2s INFO: Running scripts pre_remove 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/pre_remove_exceptions'] 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/pre_remove_exceptions'] 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'apt-get', 'remove', 'libptscotch-5.1', 'libblacs-mpi1', 'libblas3gf', 'libscalapack-mpi1', 'openmpi-common', 'openmpi-bin', 'libibverbs1', 'libopenmpi1.3', 'liblapack3gf', 'libgfortran3', 'libscotch-5.1', 'mpi-default-bin', 'libnuma1', 'libtorque2', 'libmumps-ptscotch-4.9.2'] 0m13.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libblacs-mpi1 libblas3gf libgfortran3 libibverbs1 liblapack3gf libmumps-ptscotch-4.9.2 libnuma1 libopenmpi1.3 libptscotch-5.1 libscalapack-mpi1 libscotch-5.1 libtorque2 mpi-default-bin openmpi-bin openmpi-common 0 upgraded, 0 newly installed, 15 to remove and 0 not upgraded. After this operation, 30.4 MB disk space will be freed. (Reading database ... 6577 files and directories currently installed.) Removing libmumps-ptscotch-4.9.2 ... Removing libscalapack-mpi1 ... Removing libblacs-mpi1 ... Removing liblapack3gf ... Removing libblas3gf ... Removing libptscotch-5.1 ... Removing mpi-default-bin ... Removing openmpi-bin ... Removing libopenmpi1.3 ... Removing libgfortran3 ... Removing libibverbs1 ... Removing libnuma1 ... Removing libscotch-5.1 ... Removing libtorque2 ... Removing openmpi-common ... 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'apt-get', 'remove', 'libptscotch-5.1', 'libblacs-mpi1', 'libblas3gf', 'libscalapack-mpi1', 'openmpi-common', 'openmpi-bin', 'libibverbs1', 'libopenmpi1.3', 'liblapack3gf', 'libgfortran3', 'libscotch-5.1', 'mpi-default-bin', 'libnuma1', 'libtorque2', 'libmumps-ptscotch-4.9.2'] 0m13.1s INFO: Running scripts post_remove 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/post_remove_exceptions_lenny'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/post_remove_exceptions_lenny'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/post_remove_extras'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/post_remove_extras'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'dpkg', '--purge', 'libptscotch-5.1', 'libblacs-mpi1', 'libblas3gf', 'libscalapack-mpi1', 'openmpi-common', 'openmpi-bin', 'libibverbs1', 'libopenmpi1.3', 'liblapack3gf', 'libgfortran3', 'libscotch-5.1', 'mpi-default-bin', 'libnuma1', 'libtorque2'] 0m13.4s DUMP: (Reading database ... 6262 files and directories currently installed.) Removing libptscotch-5.1 ... Purging configuration files for libptscotch-5.1 ... Removing libblacs-mpi1 ... Purging configuration files for libblacs-mpi1 ... Removing libblas3gf ... Purging configuration files for libblas3gf ... Removing libscalapack-mpi1 ... Purging configuration files for libscalapack-mpi1 ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed. Removing openmpi-bin ... Purging configuration files for openmpi-bin ... Removing libibverbs1 ... Purging configuration files for libibverbs1 ... Removing libopenmpi1.3 ... Purging configuration files for libopenmpi1.3 ... Removing liblapack3gf ... Purging configuration files for liblapack3gf ... Removing libgfortran3 ... Purging configuration files for libgfortran3 ... Removing libscotch-5.1 ... Purging configuration files for libscotch-5.1 ... dpkg: warning: ignoring request to remove mpi-default-bin which isn't installed. Removing libnuma1 ... Purging configuration files for libnuma1 ... Removing libtorque2 ... Purging configuration files for libtorque2 ... 0m13.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'dpkg', '--purge', 'libptscotch-5.1', 'libblacs-mpi1', 'libblas3gf', 'libscalapack-mpi1', 'openmpi-common', 'openmpi-bin', 'libibverbs1', 'libopenmpi1.3', 'liblapack3gf', 'libgfortran3', 'libscotch-5.1', 'mpi-default-bin', 'libnuma1', 'libtorque2'] 0m13.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'dpkg', '--purge', 'libmumps-ptscotch-4.9.2'] 0m13.4s DUMP: (Reading database ... 6258 files and directories currently installed.) Removing libmumps-ptscotch-4.9.2 ... Purging configuration files for libmumps-ptscotch-4.9.2 ... 0m13.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'dpkg', '--purge', 'libmumps-ptscotch-4.9.2'] 0m13.4s INFO: Running scripts post_purge 0m13.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/post_purge_exceptions'] 0m13.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'tmp/scripts/post_purge_exceptions'] 0m13.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'dpkg', '--purge', '--pending'] 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'dpkg', '--purge', '--pending'] 0m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'dpkg', '--remove', '--pending'] 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'dpkg', '--remove', '--pending'] 0m13.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpMQcBra'] 0m13.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpMQcBra'] 0m14.6s ERROR: WARN: Broken symlinks: /etc/alternatives/liblapack.so.3gf -> /usr/lib/lapack/liblapack.so.3gf 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'dpkg-divert', '--list'] 0m14.6s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'dpkg-divert', '--list'] 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'apt-get', 'clean'] 0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'apt-get', 'clean'] 0m15.5s INFO: Warning: Package purging left files on system: /etc/alternatives/liblapack.so.3gf -> /usr/lib/lapack/liblapack.so.3gf not owned These files seem to have been left by dependencies rather than by packages being explicitly tested. 0m15.5s INFO: PASS: Installation and purging test. 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'umount', '/proc'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpMQcBra', 'umount', '/proc'] 0m15.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpMQcBra'] 0m15.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpMQcBra'] 0m15.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpMQcBra 0m15.9s INFO: PASS: All tests. 0m15.9s INFO: piuparts run ends. ret=0 End: 2014-03-30 09:09:08 UTC