Start: 2014-04-20 06:19:37 UTC Package: libscalapack-mpi-dev Priority: extra Section: libdevel Installed-Size: 10476 Maintainer: Muammar El Khatib Architecture: amd64 Source: scalapack (1.8.0-6) Version: 1.8.0-6+b1 Replaces: scalapack-lam-dev, scalapack-mpich-dev Depends: libscalapack-mpi1 (= 1.8.0-6+b1), libblacs-mpi-dev Suggests: scalapack-doc Conflicts: scalapack-lam-dev, scalapack-mpich-dev Filename: pool/main/s/scalapack/libscalapack-mpi-dev_1.8.0-6+b1_amd64.deb Size: 3577244 MD5sum: 53d744a221b18a5b8ca9ce5100fdec0d SHA1: e148008d3e8b7d5628f01fdb0c96aae8602234bf SHA256: 887380834498ca3e99d991480b24155c6dddf6afc28ffec12980c0ef9f3dcb3d Description: Scalable Linear Algebra Package - Dev. files for MPICH ScaLAPACK is the parallel version of LAPACK and is used on Beowulf type clusters. . You can choose between an implementation based on MPI or PVM. This package uses MPI. . The package is available for LAM and MPICH. This package uses MPICH. There are packages for the shared libraries, for the static libraries and the development files (this one) and for test programs. . Also included: PBLAS, Parallel Basic Linear Algebra Subprograms. Homepage: http://www.netlib.org/scalapack/ Tag: devel::library, qa::low-popcon Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 35m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt libscalapack-mpi-dev=1.8.0-6+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at http://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.58~201404171043~0.57-36-g04ccef9 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt libscalapack-mpi-dev=1.8.0-6+b1 0m0.0s INFO: Running on: Linux piu-slave-bm-a 3.2.0-4-amd64 #1 SMP Debian 3.2.54-2 x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpItYHsG 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpItYHsG 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpItYHsG', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpItYHsG', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.8s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ squeeze main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'apt-get', 'update'] 0m1.9s DUMP: Hit http://mirror.bm.debian.org squeeze Release.gpg Ign http://mirror.bm.debian.org/debian/ squeeze/main Translation-en Hit http://mirror.bm.debian.org squeeze Release Hit http://mirror.bm.debian.org squeeze/main amd64 Packages Reading package lists... 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'apt-get', 'update'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpItYHsG/tmp/scripts/ 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts-squeeze to /srv/piuparts.debian.org/tmp/tmpItYHsG/tmp/scripts/ 0m2.2s INFO: Running scripts post_setup 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/post_setup_experimental'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/post_setup_experimental'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/post_setup_forbid_home'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/post_setup_forbid_home'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m3.2s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 320 kB of archives. After this operation, 1532 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main adduser all 3.112+nmu2 [250 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main ucf all 3.0025+nmu1 [69.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 320 kB in 0s (27.4 MB/s) Selecting previously deselected package adduser. (Reading database ... 6135 files and directories currently installed.) Unpacking adduser (from .../adduser_3.112+nmu2_all.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu1_all.deb) ... Moving old data out of the way Setting up adduser (3.112+nmu2) ... Setting up ucf (3.0025+nmu1) ... 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'apt-get', 'clean'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'apt-get', 'clean'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'dpkg', '--get-selections', '*'] 0m3.8s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libgcc1 install liblocale-gettext-perl install liblzma2 install libncurses5 install libpam-modules install libpam-runtime install libpam0g install libreadline6 install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mount install ncurses-base install ncurses-bin install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'dpkg', '--get-selections', '*'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'dpkg-divert', '--list'] 0m3.8s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'dpkg-divert', '--list'] 0m3.8s INFO: apt-cache does not know about any of the requested packages 0m3.8s INFO: Running scripts pre_test 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/pre_test_root_password'] 0m3.8s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/pre_test_root_password'] 0m3.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpItYHsG'] 0m4.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpItYHsG'] 0m4.9s DEBUG: No broken symlinks as far as we can find. 0m4.9s INFO: Running scripts pre_install 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/pre_install_database-server'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/pre_install_database-server'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/pre_install_exceptions'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/pre_install_exceptions'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/pre_install_extras'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/pre_install_extras'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'apt-cache', 'show', 'libscalapack-mpi-dev=1.8.0-6+b1'] 0m5.0s DUMP: Package: libscalapack-mpi-dev Priority: extra Section: libdevel Installed-Size: 10476 Maintainer: Muammar El Khatib Architecture: amd64 Source: scalapack (1.8.0-6) Version: 1.8.0-6+b1 Replaces: scalapack-lam-dev, scalapack-mpich-dev Depends: libscalapack-mpi1 (= 1.8.0-6+b1), libblacs-mpi-dev Suggests: scalapack-doc Conflicts: scalapack-lam-dev, scalapack-mpich-dev Filename: pool/main/s/scalapack/libscalapack-mpi-dev_1.8.0-6+b1_amd64.deb Size: 3577244 MD5sum: 53d744a221b18a5b8ca9ce5100fdec0d SHA1: e148008d3e8b7d5628f01fdb0c96aae8602234bf SHA256: 887380834498ca3e99d991480b24155c6dddf6afc28ffec12980c0ef9f3dcb3d Description: Scalable Linear Algebra Package - Dev. files for MPICH ScaLAPACK is the parallel version of LAPACK and is used on Beowulf type clusters. . You can choose between an implementation based on MPI or PVM. This package uses MPI. . The package is available for LAM and MPICH. This package uses MPICH. There are packages for the shared libraries, for the static libraries and the development files (this one) and for test programs. . Also included: PBLAS, Parallel Basic Linear Algebra Subprograms. Homepage: http://www.netlib.org/scalapack/ Tag: devel::library, qa::low-popcon 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'apt-cache', 'show', 'libscalapack-mpi-dev=1.8.0-6+b1'] 0m5.0s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed Depends: libscalapack-mpi1 (= 1.8.0-6+b1), libblacs-mpi-dev Conflicts: scalapack-lam-dev, scalapack-mpich-dev 0m5.0s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpWwiIEF/piuparts-depends-dummy'] 0m5.0s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpWwiIEF/piuparts-depends-dummy.deb'. 0m5.0s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpWwiIEF/piuparts-depends-dummy'] 0m5.0s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpWwiIEF/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpItYHsG/tmp 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m5.0s DUMP: Selecting previously deselected package piuparts-depends-dummy. (Reading database ... 6258 files and directories currently installed.) Unpacking piuparts-depends-dummy (from tmp/piuparts-depends-dummy.deb) ... dpkg: dependency problems prevent configuration of piuparts-depends-dummy: piuparts-depends-dummy depends on libscalapack-mpi1 (= 1.8.0-6+b1); however: Package libscalapack-mpi1 is not installed. piuparts-depends-dummy depends on libblacs-mpi-dev; however: Package libblacs-mpi-dev is not installed. dpkg: error processing piuparts-depends-dummy (--install): dependency problems - leaving unconfigured Errors were encountered while processing: piuparts-depends-dummy 0m5.0s DEBUG: Command failed (status=1), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'apt-get', '-yf', 'install'] 0m7.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Correcting dependencies... Done The following extra packages will be installed: libblacs-mpi-dev libblacs-mpi1 libblas3gf libgfortran3 libibverbs-dev libibverbs1 liblapack3gf libnuma1 libopenmpi-dev libopenmpi1.3 libscalapack-mpi1 libtorque2 mpi-default-bin mpi-default-dev openmpi-bin openmpi-common Suggested packages: scalapack-doc gfortran Recommended packages: openmpi-checkpoint The following NEW packages will be installed: libblacs-mpi-dev libblacs-mpi1 libblas3gf libgfortran3 libibverbs-dev libibverbs1 liblapack3gf libnuma1 libopenmpi-dev libopenmpi1.3 libscalapack-mpi1 libtorque2 mpi-default-bin mpi-default-dev openmpi-bin openmpi-common 0 upgraded, 16 newly installed, 0 to remove and 0 not upgraded. 1 not fully installed or removed. Need to get 13.0 MB of archives. After this operation, 39.7 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main libgfortran3 amd64 4.4.5-8 [291 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main libibverbs1 amd64 1.1.3-2 [33.7 kB] Get:3 http://mirror.bm.debian.org/debian/ squeeze/main libnuma1 amd64 2.0.5-1 [26.7 kB] Get:4 http://mirror.bm.debian.org/debian/ squeeze/main libtorque2 amd64 2.4.8+dfsg-9squeeze3 [115 kB] Get:5 http://mirror.bm.debian.org/debian/ squeeze/main libopenmpi1.3 amd64 1.4.2-4 [1400 kB] Get:6 http://mirror.bm.debian.org/debian/ squeeze/main openmpi-common all 1.4.2-4 [89.5 kB] Get:7 http://mirror.bm.debian.org/debian/ squeeze/main openmpi-bin amd64 1.4.2-4 [165 kB] Get:8 http://mirror.bm.debian.org/debian/ squeeze/main mpi-default-bin amd64 0.6 [2610 B] Get:9 http://mirror.bm.debian.org/debian/ squeeze/main libblacs-mpi1 amd64 1.1-28.2+b1 [63.5 kB] Get:10 http://mirror.bm.debian.org/debian/ squeeze/main libblas3gf amd64 1.2-8 [229 kB] Get:11 http://mirror.bm.debian.org/debian/ squeeze/main liblapack3gf amd64 3.2.1-8 [4434 kB] Get:12 http://mirror.bm.debian.org/debian/ squeeze/main libscalapack-mpi1 amd64 1.8.0-6+b1 [3312 kB] Get:13 http://mirror.bm.debian.org/debian/ squeeze/main libibverbs-dev amd64 1.1.3-2 [83.3 kB] Get:14 http://mirror.bm.debian.org/debian/ squeeze/main libopenmpi-dev amd64 1.4.2-4 [2726 kB] Get:15 http://mirror.bm.debian.org/debian/ squeeze/main mpi-default-dev amd64 0.6 [3202 B] Get:16 http://mirror.bm.debian.org/debian/ squeeze/main libblacs-mpi-dev amd64 1.1-28.2+b1 [72.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.0 MB in 0s (13.6 MB/s) Selecting previously deselected package libgfortran3. (Reading database ... 6258 files and directories currently installed.) Unpacking libgfortran3 (from .../libgfortran3_4.4.5-8_amd64.deb) ... Selecting previously deselected package libibverbs1. Unpacking libibverbs1 (from .../libibverbs1_1.1.3-2_amd64.deb) ... Selecting previously deselected package libnuma1. Unpacking libnuma1 (from .../libnuma1_2.0.5-1_amd64.deb) ... Selecting previously deselected package libtorque2. Unpacking libtorque2 (from .../libtorque2_2.4.8+dfsg-9squeeze3_amd64.deb) ... Selecting previously deselected package libopenmpi1.3. Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.2-4_amd64.deb) ... Selecting previously deselected package openmpi-common. Unpacking openmpi-common (from .../openmpi-common_1.4.2-4_all.deb) ... Selecting previously deselected package openmpi-bin. Unpacking openmpi-bin (from .../openmpi-bin_1.4.2-4_amd64.deb) ... Selecting previously deselected package mpi-default-bin. Unpacking mpi-default-bin (from .../mpi-default-bin_0.6_amd64.deb) ... Selecting previously deselected package libblacs-mpi1. Unpacking libblacs-mpi1 (from .../libblacs-mpi1_1.1-28.2+b1_amd64.deb) ... Selecting previously deselected package libblas3gf. Unpacking libblas3gf (from .../libblas3gf_1.2-8_amd64.deb) ... Selecting previously deselected package liblapack3gf. Unpacking liblapack3gf (from .../liblapack3gf_3.2.1-8_amd64.deb) ... Selecting previously deselected package libscalapack-mpi1. Unpacking libscalapack-mpi1 (from .../libscalapack-mpi1_1.8.0-6+b1_amd64.deb) ... Selecting previously deselected package libibverbs-dev. Unpacking libibverbs-dev (from .../libibverbs-dev_1.1.3-2_amd64.deb) ... Selecting previously deselected package libopenmpi-dev. Unpacking libopenmpi-dev (from .../libopenmpi-dev_1.4.2-4_amd64.deb) ... Selecting previously deselected package mpi-default-dev. Unpacking mpi-default-dev (from .../mpi-default-dev_0.6_amd64.deb) ... Selecting previously deselected package libblacs-mpi-dev. Unpacking libblacs-mpi-dev (from .../libblacs-mpi-dev_1.1-28.2+b1_amd64.deb) ... Setting up libgfortran3 (4.4.5-8) ... Setting up libibverbs1 (1.1.3-2) ... Setting up libnuma1 (2.0.5-1) ... Setting up libtorque2 (2.4.8+dfsg-9squeeze3) ... Setting up libopenmpi1.3 (1.4.2-4) ... Setting up openmpi-common (1.4.2-4) ... Setting up openmpi-bin (1.4.2-4) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode. Setting up mpi-default-bin (0.6) ... Setting up libblacs-mpi1 (1.1-28.2+b1) ... Setting up libblas3gf (1.2-8) ... update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode. Setting up liblapack3gf (3.2.1-8) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode. Setting up libscalapack-mpi1 (1.8.0-6+b1) ... Setting up libibverbs-dev (1.1.3-2) ... Setting up libopenmpi-dev (1.4.2-4) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode. Setting up mpi-default-dev (0.6) ... Setting up libblacs-mpi-dev (1.1-28.2+b1) ... Setting up piuparts-depends-dummy (0.invalid.0) ... 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'apt-get', '-yf', 'install'] 0m7.4s INFO: Installation of ['tmp/piuparts-depends-dummy.deb'] ok 0m7.4s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpItYHsG/tmp/piuparts-depends-dummy.deb 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m7.4s DUMP: piuparts-depends-dummy install ok installed 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m7.4s DUMP: (Reading database ... 7182 files and directories currently installed.) Removing piuparts-depends-dummy ... 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'apt-get', 'clean'] 0m7.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'apt-get', 'clean'] 0m7.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpItYHsG'] 0m8.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpItYHsG'] 0m9.1s DEBUG: No broken symlinks as far as we can find. 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'apt-cache', 'policy'] 0m9.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages release v=6.0.9,o=Debian,a=oldstable,n=squeeze,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'apt-cache', 'policy'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'apt-cache', 'policy', 'libscalapack-mpi-dev'] 0m9.2s DUMP: libscalapack-mpi-dev: Installed: (none) Candidate: 1.8.0-6+b1 Version table: 1.8.0-6+b1 0 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'apt-cache', 'policy', 'libscalapack-mpi-dev'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'apt-get', '-y', 'install', 'libscalapack-mpi-dev=1.8.0-6+b1'] 0m10.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Suggested packages: scalapack-doc The following NEW packages will be installed: libscalapack-mpi-dev 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 3577 kB of archives. After this operation, 10.7 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main libscalapack-mpi-dev amd64 1.8.0-6+b1 [3577 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3577 kB in 0s (18.9 MB/s) Selecting previously deselected package libscalapack-mpi-dev. (Reading database ... 7182 files and directories currently installed.) Unpacking libscalapack-mpi-dev (from .../libscalapack-mpi-dev_1.8.0-6+b1_amd64.deb) ... Setting up libscalapack-mpi-dev (1.8.0-6+b1) ... 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'apt-get', '-y', 'install', 'libscalapack-mpi-dev=1.8.0-6+b1'] 0m10.1s INFO: Running scripts post_install 0m10.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpItYHsG'] 0m10.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpItYHsG'] 0m11.3s DEBUG: No broken symlinks as far as we can find. 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'dpkg', '--get-selections', '*'] 0m11.4s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libblacs-mpi-dev install libblacs-mpi1 install libblas3gf install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libgcc1 install libgfortran3 install libibverbs-dev install libibverbs1 install liblapack3gf install liblocale-gettext-perl install liblzma2 install libncurses5 install libnuma1 install libopenmpi-dev install libopenmpi1.3 install libpam-modules install libpam-runtime install libpam0g install libreadline6 install libscalapack-mpi-dev install libscalapack-mpi1 install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libtorque2 install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mount install mpi-default-bin install mpi-default-dev install ncurses-base install ncurses-bin install openmpi-bin install openmpi-common install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'dpkg', '--get-selections', '*'] 0m12.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpItYHsG', '-ac'] 0m12.8s DUMP: debsums: no md5sums for mawk 0m12.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpItYHsG', '-ac'] 0m12.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m12.8s DUMP: 0.11.3~bpo70+1 0m12.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m12.8s INFO: Running adequate version 0.11.3~bpo70+1 now. 0m12.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'libscalapack-mpi-dev'] 0m12.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'libscalapack-mpi-dev'] 0m12.9s INFO: Running scripts pre_remove 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/pre_remove_exceptions'] 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/pre_remove_exceptions'] 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'apt-get', 'remove', 'liblapack3gf', 'libblacs-mpi1', 'libibverbs1', 'libblas3gf', 'libscalapack-mpi1', 'openmpi-common', 'mpi-default-dev', 'libopenmpi-dev', 'libopenmpi1.3', 'libibverbs-dev', 'libgfortran3', 'libtorque2', 'libblacs-mpi-dev', 'libnuma1', 'openmpi-bin', 'mpi-default-bin', 'libscalapack-mpi-dev'] 0m13.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libblacs-mpi-dev libblacs-mpi1 libblas3gf libgfortran3 libibverbs-dev libibverbs1 liblapack3gf libnuma1 libopenmpi-dev libopenmpi1.3 libscalapack-mpi-dev libscalapack-mpi1 libtorque2 mpi-default-bin mpi-default-dev openmpi-bin openmpi-common 0 upgraded, 0 newly installed, 17 to remove and 0 not upgraded. After this operation, 50.5 MB disk space will be freed. (Reading database ... 7187 files and directories currently installed.) Removing libscalapack-mpi-dev ... Removing libblacs-mpi-dev ... Removing libscalapack-mpi1 ... Removing libblacs-mpi1 ... Removing liblapack3gf ... Removing libblas3gf ... Removing mpi-default-bin ... Removing openmpi-bin ... Removing mpi-default-dev ... Removing libopenmpi-dev ... Removing libopenmpi1.3 ... Removing libgfortran3 ... Removing libibverbs-dev ... Removing libibverbs1 ... Removing libnuma1 ... Removing libtorque2 ... Removing openmpi-common ... 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'apt-get', 'remove', 'liblapack3gf', 'libblacs-mpi1', 'libibverbs1', 'libblas3gf', 'libscalapack-mpi1', 'openmpi-common', 'mpi-default-dev', 'libopenmpi-dev', 'libopenmpi1.3', 'libibverbs-dev', 'libgfortran3', 'libtorque2', 'libblacs-mpi-dev', 'libnuma1', 'openmpi-bin', 'mpi-default-bin', 'libscalapack-mpi-dev'] 0m13.7s INFO: Running scripts post_remove 0m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/post_remove_exceptions_lenny'] 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/post_remove_exceptions_lenny'] 0m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/post_remove_extras'] 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/post_remove_extras'] 0m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'dpkg', '--purge', 'liblapack3gf', 'libblacs-mpi1', 'libibverbs1', 'libblas3gf', 'libscalapack-mpi1', 'openmpi-common', 'mpi-default-dev', 'libopenmpi-dev', 'libopenmpi1.3', 'libibverbs-dev', 'libgfortran3', 'libtorque2', 'libblacs-mpi-dev', 'libnuma1', 'openmpi-bin', 'mpi-default-bin'] 0m13.9s DUMP: (Reading database ... 6262 files and directories currently installed.) Removing liblapack3gf ... Purging configuration files for liblapack3gf ... Removing libblacs-mpi1 ... Purging configuration files for libblacs-mpi1 ... Removing libibverbs1 ... Purging configuration files for libibverbs1 ... Removing libblas3gf ... Purging configuration files for libblas3gf ... Removing libscalapack-mpi1 ... Purging configuration files for libscalapack-mpi1 ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed. dpkg: warning: ignoring request to remove mpi-default-dev which isn't installed. dpkg: warning: ignoring request to remove libopenmpi-dev which isn't installed. Removing libopenmpi1.3 ... Purging configuration files for libopenmpi1.3 ... dpkg: warning: ignoring request to remove libibverbs-dev which isn't installed. Removing libgfortran3 ... Purging configuration files for libgfortran3 ... Removing libtorque2 ... Purging configuration files for libtorque2 ... dpkg: warning: ignoring request to remove libblacs-mpi-dev which isn't installed. Removing libnuma1 ... Purging configuration files for libnuma1 ... Removing openmpi-bin ... Purging configuration files for openmpi-bin ... dpkg: warning: ignoring request to remove mpi-default-bin which isn't installed. 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'dpkg', '--purge', 'liblapack3gf', 'libblacs-mpi1', 'libibverbs1', 'libblas3gf', 'libscalapack-mpi1', 'openmpi-common', 'mpi-default-dev', 'libopenmpi-dev', 'libopenmpi1.3', 'libibverbs-dev', 'libgfortran3', 'libtorque2', 'libblacs-mpi-dev', 'libnuma1', 'openmpi-bin', 'mpi-default-bin'] 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'dpkg', '--purge', 'libscalapack-mpi-dev'] 0m13.9s DUMP: dpkg: warning: ignoring request to remove libscalapack-mpi-dev which isn't installed. 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'dpkg', '--purge', 'libscalapack-mpi-dev'] 0m13.9s INFO: Running scripts post_purge 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/post_purge_exceptions'] 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'tmp/scripts/post_purge_exceptions'] 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'dpkg', '--purge', '--pending'] 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'dpkg', '--purge', '--pending'] 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'dpkg', '--remove', '--pending'] 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'dpkg', '--remove', '--pending'] 0m13.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpItYHsG'] 0m14.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpItYHsG'] 0m15.0s ERROR: WARN: Broken symlinks: /etc/alternatives/liblapack.so.3gf -> /usr/lib/lapack/liblapack.so.3gf 0m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'dpkg-divert', '--list'] 0m15.0s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'dpkg-divert', '--list'] 0m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'apt-get', 'clean'] 0m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'apt-get', 'clean'] 0m16.1s INFO: Warning: Package purging left files on system: /etc/alternatives/liblapack.so.3gf -> /usr/lib/lapack/liblapack.so.3gf not owned These files seem to have been left by dependencies rather than by packages being explicitly tested. 0m16.1s INFO: PASS: Installation and purging test. 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'umount', '/proc'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpItYHsG', 'umount', '/proc'] 0m16.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpItYHsG'] 0m16.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpItYHsG'] 0m16.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpItYHsG 0m16.5s INFO: PASS: All tests. 0m16.5s INFO: piuparts run ends. ret=0 End: 2014-04-20 06:19:53 UTC