Start: 2014-10-20 08:29:43 UTC Package: libshogun-dev Priority: optional Section: libdevel Installed-Size: 7268 Maintainer: Soeren Sonnenburg Architecture: amd64 Source: shogun Version: 0.9.3-4 Depends: libshogun8 (= 0.9.3-4) Filename: pool/main/s/shogun/libshogun-dev_0.9.3-4_amd64.deb Size: 1538284 MD5sum: 1cc8b23119f4352008205d0bf8275411 SHA1: d07d1a049b1bd9830844389b18c9afd13c0cdf98 SHA256: 317eedbef43a0d8d1ebbeec0cc64c30cb27149b042dcb68e78bb70136c94328a Description: Large Scale Machine Learning Toolbox SHOGUN - is a new machine learning toolbox with focus on large scale kernel methods and especially on Support Vector Machines (SVM) with focus to bioinformatics. It provides a generic SVM object interfacing to several different SVM implementations. Each of the SVMs can be combined with a variety of the many kernels implemented. It can deal with weighted linear combination of a number of sub-kernels, each of which not necessarily working on the same domain, where an optimal sub-kernel weighting can be learned using Multiple Kernel Learning. Apart from SVM 2-class classification and regression problems, a number of linear methods like Linear Discriminant Analysis (LDA), Linear Programming Machine (LPM), (Kernel) Perceptrons and also algorithms to train hidden markov models are implemented. The input feature-objects can be dense, sparse or strings and of type int/short/double/char and can be converted into different feature types. Chains of preprocessors (e.g. substracting the mean) can be attached to each feature object allowing for on-the-fly pre-processing. . SHOGUN comes in different flavours, a stand-a-lone version and also with interfaces to Matlab(tm), R, Octave, Readline and Python. This package includes the developer files required to create stand-a-lone executables. Homepage: http://www.shogun-toolbox.org Tag: devel::library, role::devel-lib Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 35m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt libshogun-dev=0.9.3-4 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.59 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt libshogun-dev=0.9.3-4 0m0.0s INFO: Running on: Linux piu-slave-bm-a 3.2.0-4-amd64 #1 SMP Debian 3.2.63-2 x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpusJVzm 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpusJVzm 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpusJVzm', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.7s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpusJVzm', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.7s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ squeeze main 0m1.7s DEBUG: Created policy-rc.d and chmodded it. 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'apt-get', 'update'] 0m1.8s DUMP: Hit http://mirror.bm.debian.org squeeze Release.gpg Ign http://mirror.bm.debian.org/debian/ squeeze/main Translation-en Hit http://mirror.bm.debian.org squeeze Release Hit http://mirror.bm.debian.org squeeze/main amd64 Packages Reading package lists... 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'apt-get', 'update'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'apt-get', '-yf', 'dist-upgrade'] 0m2.1s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'apt-get', '-yf', 'dist-upgrade'] 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpusJVzm/tmp/scripts/ 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts-squeeze to /srv/piuparts.debian.org/tmp/tmpusJVzm/tmp/scripts/ 0m2.1s INFO: Running scripts post_setup 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/post_setup_experimental'] 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/post_setup_experimental'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/post_setup_forbid_home'] 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/post_setup_forbid_home'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m2.9s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 320 kB of archives. After this operation, 1532 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main adduser all 3.112+nmu2 [250 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main ucf all 3.0025+nmu1 [69.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 320 kB in 0s (27.0 MB/s) Selecting previously deselected package adduser. (Reading database ... 6138 files and directories currently installed.) Unpacking adduser (from .../adduser_3.112+nmu2_all.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu1_all.deb) ... Moving old data out of the way Setting up adduser (3.112+nmu2) ... Setting up ucf (3.0025+nmu1) ... 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'apt-get', 'clean'] 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'apt-get', 'clean'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'dpkg', '--get-selections', '*'] 0m3.4s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libgcc1 install liblocale-gettext-perl install liblzma2 install libncurses5 install libpam-modules install libpam-runtime install libpam0g install libreadline6 install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mount install ncurses-base install ncurses-bin install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'dpkg', '--get-selections', '*'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'dpkg-divert', '--list'] 0m3.4s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'dpkg-divert', '--list'] 0m3.4s INFO: apt-cache does not know about any of the requested packages 0m3.4s INFO: Running scripts pre_test 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/pre_test_root_password'] 0m3.4s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/pre_test_root_password'] 0m3.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpusJVzm'] 0m3.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpusJVzm'] 0m4.5s DEBUG: No broken symlinks as far as we can find. 0m4.5s INFO: Running scripts pre_install 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/pre_install_database-server'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/pre_install_database-server'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/pre_install_exceptions'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/pre_install_exceptions'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/pre_install_extras'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/pre_install_extras'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'apt-cache', 'show', 'libshogun-dev=0.9.3-4'] 0m4.6s DUMP: Package: libshogun-dev Priority: optional Section: libdevel Installed-Size: 7268 Maintainer: Soeren Sonnenburg Architecture: amd64 Source: shogun Version: 0.9.3-4 Depends: libshogun8 (= 0.9.3-4) Filename: pool/main/s/shogun/libshogun-dev_0.9.3-4_amd64.deb Size: 1538284 MD5sum: 1cc8b23119f4352008205d0bf8275411 SHA1: d07d1a049b1bd9830844389b18c9afd13c0cdf98 SHA256: 317eedbef43a0d8d1ebbeec0cc64c30cb27149b042dcb68e78bb70136c94328a Description: Large Scale Machine Learning Toolbox SHOGUN - is a new machine learning toolbox with focus on large scale kernel methods and especially on Support Vector Machines (SVM) with focus to bioinformatics. It provides a generic SVM object interfacing to several different SVM implementations. Each of the SVMs can be combined with a variety of the many kernels implemented. It can deal with weighted linear combination of a number of sub-kernels, each of which not necessarily working on the same domain, where an optimal sub-kernel weighting can be learned using Multiple Kernel Learning. Apart from SVM 2-class classification and regression problems, a number of linear methods like Linear Discriminant Analysis (LDA), Linear Programming Machine (LPM), (Kernel) Perceptrons and also algorithms to train hidden markov models are implemented. The input feature-objects can be dense, sparse or strings and of type int/short/double/char and can be converted into different feature types. Chains of preprocessors (e.g. substracting the mean) can be attached to each feature object allowing for on-the-fly pre-processing. . SHOGUN comes in different flavours, a stand-a-lone version and also with interfaces to Matlab(tm), R, Octave, Readline and Python. This package includes the developer files required to create stand-a-lone executables. Homepage: http://www.shogun-toolbox.org Tag: devel::library, role::devel-lib 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'apt-cache', 'show', 'libshogun-dev=0.9.3-4'] 0m4.6s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed Depends: libshogun8 (= 0.9.3-4) 0m4.6s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpxvGfc_/piuparts-depends-dummy'] 0m4.6s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpxvGfc_/piuparts-depends-dummy.deb'. 0m4.6s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpxvGfc_/piuparts-depends-dummy'] 0m4.6s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpxvGfc_/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpusJVzm/tmp 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m4.6s DUMP: Selecting previously deselected package piuparts-depends-dummy. (Reading database ... 6261 files and directories currently installed.) Unpacking piuparts-depends-dummy (from tmp/piuparts-depends-dummy.deb) ... dpkg: dependency problems prevent configuration of piuparts-depends-dummy: piuparts-depends-dummy depends on libshogun8 (= 0.9.3-4); however: Package libshogun8 is not installed. dpkg: error processing piuparts-depends-dummy (--install): dependency problems - leaving unconfigured Errors were encountered while processing: piuparts-depends-dummy 0m4.6s DEBUG: Command failed (status=1), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'apt-get', '-yf', 'install'] 0m6.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Correcting dependencies... Done The following extra packages will be installed: libatlas3gf-base libgfortran3 libglpk0 libgmp3c2 libhdf5-serial-1.8.4 libltdl7 liblzo2-2 libshogun8 Suggested packages: libblas3gf liblapack3gf libiodbc2-dev libmysqlclient-dev The following NEW packages will be installed: libatlas3gf-base libgfortran3 libglpk0 libgmp3c2 libhdf5-serial-1.8.4 libltdl7 liblzo2-2 libshogun8 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. 1 not fully installed or removed. Need to get 9928 kB of archives. After this operation, 27.0 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main libgfortran3 amd64 4.4.5-8 [291 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main libatlas3gf-base amd64 3.8.3-27 [6200 kB] Get:3 http://mirror.bm.debian.org/debian/ squeeze/main libgmp3c2 amd64 2:4.3.2+dfsg-1 [313 kB] Get:4 http://mirror.bm.debian.org/debian/ squeeze/main libltdl7 amd64 2.2.6b-2 [296 kB] Get:5 http://mirror.bm.debian.org/debian/ squeeze/main libglpk0 amd64 4.43-1 [446 kB] Get:6 http://mirror.bm.debian.org/debian/ squeeze/main libhdf5-serial-1.8.4 amd64 1.8.4-patch1-2 [1479 kB] Get:7 http://mirror.bm.debian.org/debian/ squeeze/main liblzo2-2 amd64 2.03-2 [59.6 kB] Get:8 http://mirror.bm.debian.org/debian/ squeeze/main libshogun8 amd64 0.9.3-4 [844 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9928 kB in 0s (16.5 MB/s) Selecting previously deselected package libgfortran3. (Reading database ... 6261 files and directories currently installed.) Unpacking libgfortran3 (from .../libgfortran3_4.4.5-8_amd64.deb) ... Selecting previously deselected package libatlas3gf-base. Unpacking libatlas3gf-base (from .../libatlas3gf-base_3.8.3-27_amd64.deb) ... Selecting previously deselected package libgmp3c2. Unpacking libgmp3c2 (from .../libgmp3c2_2%3a4.3.2+dfsg-1_amd64.deb) ... Selecting previously deselected package libltdl7. Unpacking libltdl7 (from .../libltdl7_2.2.6b-2_amd64.deb) ... Selecting previously deselected package libglpk0. Unpacking libglpk0 (from .../libglpk0_4.43-1_amd64.deb) ... Selecting previously deselected package libhdf5-serial-1.8.4. Unpacking libhdf5-serial-1.8.4 (from .../libhdf5-serial-1.8.4_1.8.4-patch1-2_amd64.deb) ... Selecting previously deselected package liblzo2-2. Unpacking liblzo2-2 (from .../liblzo2-2_2.03-2_amd64.deb) ... Selecting previously deselected package libshogun8. Unpacking libshogun8 (from .../libshogun8_0.9.3-4_amd64.deb) ... Setting up libgfortran3 (4.4.5-8) ... Setting up libatlas3gf-base (3.8.3-27) ... update-alternatives: using /usr/lib/atlas-base/atlas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode. update-alternatives: using /usr/lib/atlas-base/atlas/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode. Setting up libgmp3c2 (2:4.3.2+dfsg-1) ... Setting up libltdl7 (2.2.6b-2) ... Setting up libglpk0 (4.43-1) ... Setting up libhdf5-serial-1.8.4 (1.8.4-patch1-2) ... Setting up liblzo2-2 (2.03-2) ... Setting up libshogun8 (0.9.3-4) ... Setting up piuparts-depends-dummy (0.invalid.0) ... 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'apt-get', '-yf', 'install'] 0m6.2s INFO: Installation of ['tmp/piuparts-depends-dummy.deb'] ok 0m6.2s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpusJVzm/tmp/piuparts-depends-dummy.deb 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m6.2s DUMP: piuparts-depends-dummy install ok installed 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m6.2s DUMP: (Reading database ... 6362 files and directories currently installed.) Removing piuparts-depends-dummy ... 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'apt-get', 'clean'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'apt-get', 'clean'] 0m6.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpusJVzm'] 0m7.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpusJVzm'] 0m7.7s DEBUG: No broken symlinks as far as we can find. 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'apt-cache', 'policy'] 0m7.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages release v=6.0.10,o=Debian,a=oldstable,n=squeeze,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'apt-cache', 'policy'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'apt-cache', 'policy', 'libshogun-dev'] 0m7.8s DUMP: libshogun-dev: Installed: (none) Candidate: 0.9.3-4 Version table: 0.9.3-4 0 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'apt-cache', 'policy', 'libshogun-dev'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'apt-get', '-y', 'install', 'libshogun-dev=0.9.3-4'] 0m8.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: libshogun-dev 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 1538 kB of archives. After this operation, 7442 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main libshogun-dev amd64 0.9.3-4 [1538 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1538 kB in 0s (12.4 MB/s) Selecting previously deselected package libshogun-dev. (Reading database ... 6362 files and directories currently installed.) Unpacking libshogun-dev (from .../libshogun-dev_0.9.3-4_amd64.deb) ... Setting up libshogun-dev (0.9.3-4) ... 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'apt-get', '-y', 'install', 'libshogun-dev=0.9.3-4'] 0m8.5s INFO: Running scripts post_install 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/post_install_exceptions'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/post_install_exceptions'] 0m8.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpusJVzm'] 0m8.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpusJVzm'] 0m10.3s DEBUG: No broken symlinks as far as we can find. 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'dpkg', '--get-selections', '*'] 0m10.4s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libatlas3gf-base install libattr1 install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libgcc1 install libgfortran3 install libglpk0 install libgmp3c2 install libhdf5-serial-1.8.4 install liblocale-gettext-perl install libltdl7 install liblzma2 install liblzo2-2 install libncurses5 install libpam-modules install libpam-runtime install libpam0g install libreadline6 install libselinux1 install libsepol1 install libshogun-dev install libshogun8 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mount install ncurses-base install ncurses-bin install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'dpkg', '--get-selections', '*'] 0m11.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpusJVzm', '-ac'] 0m11.6s DUMP: debsums: no md5sums for mawk 0m11.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpusJVzm', '-ac'] 0m11.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m11.6s DUMP: 0.12~bpo70+1 0m11.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m11.6s INFO: Running adequate version 0.12~bpo70+1 now. 0m11.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'libshogun-dev'] 0m11.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'libshogun-dev'] 0m11.8s INFO: Running scripts pre_remove 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/pre_remove_exceptions'] 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/pre_remove_exceptions'] 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'apt-get', 'remove', 'libltdl7', 'libgmp3c2', 'libhdf5-serial-1.8.4', 'liblzo2-2', 'libatlas3gf-base', 'libshogun8', 'libgfortran3', 'libglpk0', 'libshogun-dev'] 0m12.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libatlas3gf-base libgfortran3 libglpk0 libgmp3c2 libhdf5-serial-1.8.4 libltdl7 liblzo2-2 libshogun-dev libshogun8 0 upgraded, 0 newly installed, 9 to remove and 0 not upgraded. After this operation, 34.5 MB disk space will be freed. (Reading database ... 6615 files and directories currently installed.) Removing libshogun-dev ... Removing libshogun8 ... Removing libatlas3gf-base ... Removing libhdf5-serial-1.8.4 ... Removing libgfortran3 ... Removing libglpk0 ... Removing libgmp3c2 ... Removing libltdl7 ... Removing liblzo2-2 ... 0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'apt-get', 'remove', 'libltdl7', 'libgmp3c2', 'libhdf5-serial-1.8.4', 'liblzo2-2', 'libatlas3gf-base', 'libshogun8', 'libgfortran3', 'libglpk0', 'libshogun-dev'] 0m12.5s INFO: Running scripts post_remove 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/post_remove_exceptions_lenny'] 0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/post_remove_exceptions_lenny'] 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/post_remove_extras'] 0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/post_remove_extras'] 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'dpkg', '--purge', 'libltdl7', 'libgmp3c2', 'libhdf5-serial-1.8.4', 'liblzo2-2', 'libatlas3gf-base', 'libshogun8', 'libgfortran3', 'libglpk0'] 0m12.5s DUMP: (Reading database ... 6261 files and directories currently installed.) Removing libltdl7 ... Purging configuration files for libltdl7 ... Removing libgmp3c2 ... Purging configuration files for libgmp3c2 ... Removing libhdf5-serial-1.8.4 ... Purging configuration files for libhdf5-serial-1.8.4 ... Removing liblzo2-2 ... Purging configuration files for liblzo2-2 ... Removing libatlas3gf-base ... Purging configuration files for libatlas3gf-base ... Removing libshogun8 ... Purging configuration files for libshogun8 ... Removing libgfortran3 ... Purging configuration files for libgfortran3 ... Removing libglpk0 ... Purging configuration files for libglpk0 ... 0m12.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'dpkg', '--purge', 'libltdl7', 'libgmp3c2', 'libhdf5-serial-1.8.4', 'liblzo2-2', 'libatlas3gf-base', 'libshogun8', 'libgfortran3', 'libglpk0'] 0m12.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'dpkg', '--purge', 'libshogun-dev'] 0m12.6s DUMP: dpkg: warning: ignoring request to remove libshogun-dev which isn't installed. 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'dpkg', '--purge', 'libshogun-dev'] 0m12.6s INFO: Running scripts post_purge 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/post_purge_exceptions'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'tmp/scripts/post_purge_exceptions'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'dpkg', '--purge', '--pending'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'dpkg', '--purge', '--pending'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'dpkg', '--remove', '--pending'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'dpkg', '--remove', '--pending'] 0m12.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpusJVzm'] 0m12.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpusJVzm'] 0m13.7s DEBUG: No broken symlinks as far as we can find. 0m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'dpkg-divert', '--list'] 0m13.7s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'dpkg-divert', '--list'] 0m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'apt-get', 'clean'] 0m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'apt-get', 'clean'] 0m14.6s INFO: PASS: Installation and purging test. 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'umount', '/proc'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpusJVzm', 'umount', '/proc'] 0m14.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpusJVzm'] 0m14.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpusJVzm'] 0m14.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpusJVzm 0m15.0s INFO: PASS: All tests. 0m15.0s INFO: piuparts run ends. ret=0 End: 2014-10-20 08:29:58 UTC