Start: 2014-05-18 07:38:35 UTC Package: libtfbs-perl Priority: optional Section: perl Installed-Size: 748 Maintainer: Debian Med Packaging Team Architecture: amd64 Source: libtfbs-perl (0.5.svn.20091128-1) Version: 0.5.svn.20091128-1+b1 Depends: perl (>= 5.10.1-11), perlapi-5.10.1, libc6 (>= 2.4), pdl, bioperl, libwww-perl, libdbi-perl Recommends: libgd-gd2-perl | libgd-gd2-noxpm-perl Filename: pool/main/libt/libtfbs-perl/libtfbs-perl_0.5.svn.20091128-1+b1_amd64.deb Size: 202396 MD5sum: 60096ecebcc9f04da84135a35f751566 SHA1: c40c5f40ad51a1397a7c4f1554e6fc170d8c48d9 SHA256: 60b711f46f401407f4e9b9b84452013073292b6608eb03ac491f9a87609d2753 Description: scanning DNA sequence with a position weight matrix The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences. . If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136". Homepage: http://tfbs.genereg.net Tag: field::biology, field::biology:bioinformatics, implemented-in::c, implemented-in::perl, qa::low-popcon, role::devel-lib, role::shared-lib Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 35m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt libtfbs-perl=0.5.svn.20091128-1+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at http://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.59~201405171014~0.58-17-g007fbc6 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt libtfbs-perl=0.5.svn.20091128-1+b1 0m0.0s INFO: Running on: Linux piu-slave-bm-a 3.2.0-4-amd64 #1 SMP Debian 3.2.57-3+deb7u1 x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp4DzbZZ 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp4DzbZZ 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.9s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.9s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ squeeze main 0m1.9s DEBUG: Created policy-rc.d and chmodded it. 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'apt-get', 'update'] 0m2.0s DUMP: Hit http://mirror.bm.debian.org squeeze Release.gpg Ign http://mirror.bm.debian.org/debian/ squeeze/main Translation-en Hit http://mirror.bm.debian.org squeeze Release Hit http://mirror.bm.debian.org squeeze/main amd64 Packages Reading package lists... 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'apt-get', 'update'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'apt-get', '-yf', 'dist-upgrade'] 0m2.3s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'apt-get', '-yf', 'dist-upgrade'] 0m2.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp4DzbZZ/tmp/scripts/ 0m2.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts-squeeze to /srv/piuparts.debian.org/tmp/tmp4DzbZZ/tmp/scripts/ 0m2.3s INFO: Running scripts post_setup 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/post_setup_experimental'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/post_setup_experimental'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/post_setup_forbid_home'] 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/post_setup_forbid_home'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m3.1s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 320 kB of archives. After this operation, 1532 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main adduser all 3.112+nmu2 [250 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main ucf all 3.0025+nmu1 [69.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 320 kB in 0s (17.3 MB/s) Selecting previously deselected package adduser. (Reading database ... 6135 files and directories currently installed.) Unpacking adduser (from .../adduser_3.112+nmu2_all.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu1_all.deb) ... Moving old data out of the way Setting up adduser (3.112+nmu2) ... Setting up ucf (3.0025+nmu1) ... 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'apt-get', 'clean'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'apt-get', 'clean'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'dpkg', '--get-selections', '*'] 0m3.6s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libgcc1 install liblocale-gettext-perl install liblzma2 install libncurses5 install libpam-modules install libpam-runtime install libpam0g install libreadline6 install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mount install ncurses-base install ncurses-bin install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'dpkg', '--get-selections', '*'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'dpkg-divert', '--list'] 0m3.6s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'dpkg-divert', '--list'] 0m3.6s INFO: apt-cache does not know about any of the requested packages 0m3.6s INFO: Running scripts pre_test 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/pre_test_root_password'] 0m3.7s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/pre_test_root_password'] 0m3.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ'] 0m3.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ'] 0m4.7s DEBUG: No broken symlinks as far as we can find. 0m4.7s INFO: Running scripts pre_install 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/pre_install_database-server'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/pre_install_database-server'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/pre_install_exceptions'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/pre_install_exceptions'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/pre_install_extras'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/pre_install_extras'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'apt-cache', 'show', 'libtfbs-perl=0.5.svn.20091128-1+b1'] 0m4.8s DUMP: Package: libtfbs-perl Priority: optional Section: perl Installed-Size: 748 Maintainer: Debian Med Packaging Team Architecture: amd64 Source: libtfbs-perl (0.5.svn.20091128-1) Version: 0.5.svn.20091128-1+b1 Depends: perl (>= 5.10.1-11), perlapi-5.10.1, libc6 (>= 2.4), pdl, bioperl, libwww-perl, libdbi-perl Recommends: libgd-gd2-perl | libgd-gd2-noxpm-perl Filename: pool/main/libt/libtfbs-perl/libtfbs-perl_0.5.svn.20091128-1+b1_amd64.deb Size: 202396 MD5sum: 60096ecebcc9f04da84135a35f751566 SHA1: c40c5f40ad51a1397a7c4f1554e6fc170d8c48d9 SHA256: 60b711f46f401407f4e9b9b84452013073292b6608eb03ac491f9a87609d2753 Description: scanning DNA sequence with a position weight matrix The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences. . If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136". Homepage: http://tfbs.genereg.net Tag: field::biology, field::biology:bioinformatics, implemented-in::c, implemented-in::perl, qa::low-popcon, role::devel-lib, role::shared-lib 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'apt-cache', 'show', 'libtfbs-perl=0.5.svn.20091128-1+b1'] 0m4.8s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed Depends: perl (>= 5.10.1-11), perlapi-5.10.1, libc6 (>= 2.4), pdl, bioperl, libwww-perl, libdbi-perl 0m4.8s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpraKbjC/piuparts-depends-dummy'] 0m4.8s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpraKbjC/piuparts-depends-dummy.deb'. 0m4.8s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpraKbjC/piuparts-depends-dummy'] 0m4.8s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpraKbjC/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmp4DzbZZ/tmp 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m4.9s DUMP: Selecting previously deselected package piuparts-depends-dummy. (Reading database ... 6258 files and directories currently installed.) Unpacking piuparts-depends-dummy (from tmp/piuparts-depends-dummy.deb) ... dpkg: dependency problems prevent configuration of piuparts-depends-dummy: piuparts-depends-dummy depends on perl (>= 5.10.1-11); however: Package perl is not installed. piuparts-depends-dummy depends on pdl; however: Package pdl is not installed. piuparts-depends-dummy depends on bioperl; however: Package bioperl is not installed. piuparts-depends-dummy depends on libwww-perl; however: Package libwww-perl is not installed. piuparts-depends-dummy depends on libdbi-perl; however: Package libdbi-perl is not installed. dpkg: error processing piuparts-depends-dummy (--install): dependency problems - leaving unconfigured Errors were encountered while processing: piuparts-depends-dummy 0m4.9s DEBUG: Command failed (status=1), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'apt-get', '-yf', 'install'] 0m16.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Correcting dependencies... Done The following extra packages will be installed: bioperl fftw2 fontconfig-config freeglut3 libcsiro0 libdata-stag-perl libdb4.7 libdbi-perl libdrm2 libexpat1 libfontconfig1 libfreetype6 libgd2-xpm libgdbm3 libgfortran3 libgl1-mesa-glx libglu1-mesa libgsl0ldbl libhdf4-0-alt libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libice6 libio-string-perl libjpeg62 libltdl7 libmpich1.0gf libnet-daemon-perl libopengl-perl libplplot9 libplrpc-perl libpng12-0 libproj0 libqhull5 libsm6 libterm-readkey-perl liburi-perl libwww-perl libx11-6 libx11-data libxau6 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxmu6 libxpm4 libxt6 libxxf86vm1 netbase pdl perl perl-modules proj-data ttf-dejavu-core x11-common Suggested packages: libmath-random-perl libxml-sax-expatxs-perl fftw-dev mpich-bin libgd-tools gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html libhdf4-doc libhdf4-alt-dev hdf4-tools libnetcdf4 libdata-dump-perl plplot9-driver-xwin plplot9-driver-gd plplot9-driver-cairo plplot9-driver-wxwidgets plplot-tcl libcompress-zlib-perl proj-bin libcrypt-ssleay-perl libio-socket-ssl-perl libpgplot-perl netpbm imagemagick libastro-fits-header-perl libinline-perl libplplot-dev doc-base libextutils-f77-perl libdevel-repl-perl perl-doc make Recommended packages: bioperl-run libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgraph-perl libgraphviz-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libstorable-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-libxml-perl perl-tk libgd-gd2-perl libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libgl1-mesa-dri libmailtools-perl libhtml-format-perl ifupdown libterm-readline-gnu-perl libterm-readline-perl-perl The following NEW packages will be installed: bioperl fftw2 fontconfig-config freeglut3 libcsiro0 libdata-stag-perl libdb4.7 libdbi-perl libdrm2 libexpat1 libfontconfig1 libfreetype6 libgd2-xpm libgdbm3 libgfortran3 libgl1-mesa-glx libglu1-mesa libgsl0ldbl libhdf4-0-alt libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libice6 libio-string-perl libjpeg62 libltdl7 libmpich1.0gf libnet-daemon-perl libopengl-perl libplplot9 libplrpc-perl libpng12-0 libproj0 libqhull5 libsm6 libterm-readkey-perl liburi-perl libwww-perl libx11-6 libx11-data libxau6 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxmu6 libxpm4 libxt6 libxxf86vm1 netbase pdl perl perl-modules proj-data ttf-dejavu-core x11-common 0 upgraded, 58 newly installed, 0 to remove and 0 not upgraded. 1 not fully installed or removed. Need to get 35.9 MB of archives. After this operation, 110 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main perl-modules all 5.10.1-17squeeze6 [3482 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main libdb4.7 amd64 4.7.25-9 [662 kB] Get:3 http://mirror.bm.debian.org/debian/ squeeze/main libgdbm3 amd64 1.8.3-9 [46.2 kB] Get:4 http://mirror.bm.debian.org/debian/ squeeze/main perl amd64 5.10.1-17squeeze6 [4462 kB] Get:5 http://mirror.bm.debian.org/debian/ squeeze/main libterm-readkey-perl amd64 2.30-4 [33.7 kB] Get:6 http://mirror.bm.debian.org/debian/ squeeze/main libgfortran3 amd64 4.4.5-8 [291 kB] Get:7 http://mirror.bm.debian.org/debian/ squeeze/main libxau6 amd64 1:1.0.6-1 [16.8 kB] Get:8 http://mirror.bm.debian.org/debian/ squeeze/main libxdmcp6 amd64 1:1.0.3-2 [19.3 kB] Get:9 http://mirror.bm.debian.org/debian/ squeeze/main libxcb1 amd64 1.6-1+squeeze1 [44.3 kB] Get:10 http://mirror.bm.debian.org/debian/ squeeze/main libx11-data all 2:1.3.3-4+squeeze1 [184 kB] Get:11 http://mirror.bm.debian.org/debian/ squeeze/main libx11-6 amd64 2:1.3.3-4+squeeze1 [847 kB] Get:12 http://mirror.bm.debian.org/debian/ squeeze/main libmpich1.0gf amd64 1.2.7-9.1 [735 kB] Get:13 http://mirror.bm.debian.org/debian/ squeeze/main fftw2 amd64 2.1.3-22 [263 kB] Get:14 http://mirror.bm.debian.org/debian/ squeeze/main libdrm2 amd64 2.4.21-1~squeeze3 [418 kB] Get:15 http://mirror.bm.debian.org/debian/ squeeze/main libxfixes3 amd64 1:4.0.5-1+squeeze1 [19.2 kB] Get:16 http://mirror.bm.debian.org/debian/ squeeze/main libxdamage1 amd64 1:1.1.3-1 [14.1 kB] Get:17 http://mirror.bm.debian.org/debian/ squeeze/main libxext6 amd64 2:1.1.2-1+squeeze1 [45.5 kB] Get:18 http://mirror.bm.debian.org/debian/ squeeze/main libxxf86vm1 amd64 1:1.1.0-2+squeeze1 [15.8 kB] Get:19 http://mirror.bm.debian.org/debian/ squeeze/main libgl1-mesa-glx amd64 7.7.1-6 [182 kB] Get:20 http://mirror.bm.debian.org/debian/ squeeze/main libxi6 amd64 2:1.3-8 [57.0 kB] Get:21 http://mirror.bm.debian.org/debian/ squeeze/main freeglut3 amd64 2.6.0-1 [140 kB] Get:22 http://mirror.bm.debian.org/debian/ squeeze/main libexpat1 amd64 2.0.1-7+squeeze1 [138 kB] Get:23 http://mirror.bm.debian.org/debian/ squeeze/main libfreetype6 amd64 2.4.2-2.1+squeeze4 [377 kB] Get:24 http://mirror.bm.debian.org/debian/ squeeze/main ttf-dejavu-core all 2.31-1 [1451 kB] Get:25 http://mirror.bm.debian.org/debian/ squeeze/main fontconfig-config all 2.8.0-2.1 [217 kB] Get:26 http://mirror.bm.debian.org/debian/ squeeze/main libfontconfig1 amd64 2.8.0-2.1 [281 kB] Get:27 http://mirror.bm.debian.org/debian/ squeeze/main libjpeg62 amd64 6b1-1 [94.0 kB] Get:28 http://mirror.bm.debian.org/debian/ squeeze/main libpng12-0 amd64 1.2.44-1+squeeze4 [180 kB] Get:29 http://mirror.bm.debian.org/debian/ squeeze/main libxpm4 amd64 1:3.5.8-1 [44.2 kB] Get:30 http://mirror.bm.debian.org/debian/ squeeze/main libgd2-xpm amd64 2.0.36~rc1~dfsg-5 [231 kB] Get:31 http://mirror.bm.debian.org/debian/ squeeze/main libglu1-mesa amd64 7.7.1-6 [216 kB] Get:32 http://mirror.bm.debian.org/debian/ squeeze/main libgsl0ldbl amd64 1.14+dfsg-1 [1024 kB] Get:33 http://mirror.bm.debian.org/debian/ squeeze/main libhdf4-0-alt amd64 4.2r4-11 [307 kB] Get:34 http://mirror.bm.debian.org/debian/ squeeze/main x11-common all 1:7.5+8+squeeze1 [279 kB] Get:35 http://mirror.bm.debian.org/debian/ squeeze/main libice6 amd64 2:1.0.6-2 [53.8 kB] Get:36 http://mirror.bm.debian.org/debian/ squeeze/main libqhull5 amd64 2009.1-1 [161 kB] Get:37 http://mirror.bm.debian.org/debian/ squeeze/main libcsiro0 amd64 5.9.5-4 [63.4 kB] Get:38 http://mirror.bm.debian.org/debian/ squeeze/main libltdl7 amd64 2.2.6b-2 [296 kB] Get:39 http://mirror.bm.debian.org/debian/ squeeze/main libplplot9 amd64 5.9.5-4 [473 kB] Get:40 http://mirror.bm.debian.org/debian/ squeeze/main proj-data amd64 4.7.0-1 [2936 kB] Get:41 http://mirror.bm.debian.org/debian/ squeeze/main libproj0 amd64 4.7.0-1 [135 kB] Get:42 http://mirror.bm.debian.org/debian/ squeeze/main libsm6 amd64 2:1.1.1-1 [25.0 kB] Get:43 http://mirror.bm.debian.org/debian/ squeeze/main libxt6 amd64 1:1.0.7-1+squeeze1 [195 kB] Get:44 http://mirror.bm.debian.org/debian/ squeeze/main libxmu6 amd64 2:1.0.5-2 [58.4 kB] Get:45 http://mirror.bm.debian.org/debian/ squeeze/main libopengl-perl amd64 0.62+dfsg-1 [565 kB] Get:46 http://mirror.bm.debian.org/debian/ squeeze/main pdl amd64 1:2.4.7+dfsg-2 [5443 kB] Get:47 http://mirror.bm.debian.org/debian/ squeeze/main libio-string-perl all 1.08-2 [12.0 kB] Get:48 http://mirror.bm.debian.org/debian/ squeeze/main libdata-stag-perl all 0.11-2 [509 kB] Get:49 http://mirror.bm.debian.org/debian/ squeeze/main bioperl all 1.6.1-2 [6367 kB] Get:50 http://mirror.bm.debian.org/debian/ squeeze/main liburi-perl all 1.54-2 [98.5 kB] Get:51 http://mirror.bm.debian.org/debian/ squeeze/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:52 http://mirror.bm.debian.org/debian/ squeeze/main libhtml-parser-perl amd64 3.66-1 [115 kB] Get:53 http://mirror.bm.debian.org/debian/ squeeze/main libhtml-tree-perl all 3.23-2 [209 kB] Get:54 http://mirror.bm.debian.org/debian/ squeeze/main netbase all 4.45 [20.7 kB] Get:55 http://mirror.bm.debian.org/debian/ squeeze/main libwww-perl all 5.836-1 [401 kB] Get:56 http://mirror.bm.debian.org/debian/ squeeze/main libnet-daemon-perl all 0.43-1 [46.6 kB] Get:57 http://mirror.bm.debian.org/debian/ squeeze/main libplrpc-perl all 0.2020-2 [36.0 kB] Get:58 http://mirror.bm.debian.org/debian/ squeeze/main libdbi-perl amd64 1.612-1 [883 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 35.9 MB in 3s (11.9 MB/s) Selecting previously deselected package perl-modules. (Reading database ... 6258 files and directories currently installed.) Unpacking perl-modules (from .../perl-modules_5.10.1-17squeeze6_all.deb) ... Selecting previously deselected package libdb4.7. Unpacking libdb4.7 (from .../libdb4.7_4.7.25-9_amd64.deb) ... Selecting previously deselected package libgdbm3. Unpacking libgdbm3 (from .../libgdbm3_1.8.3-9_amd64.deb) ... Selecting previously deselected package perl. Unpacking perl (from .../perl_5.10.1-17squeeze6_amd64.deb) ... Selecting previously deselected package libterm-readkey-perl. Unpacking libterm-readkey-perl (from .../libterm-readkey-perl_2.30-4_amd64.deb) ... Selecting previously deselected package libgfortran3. Unpacking libgfortran3 (from .../libgfortran3_4.4.5-8_amd64.deb) ... Selecting previously deselected package libxau6. Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_amd64.deb) ... Selecting previously deselected package libxdmcp6. Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.0.3-2_amd64.deb) ... 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Selecting previously deselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.1_all.deb) ... Selecting previously deselected package libfontconfig1. Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.1_amd64.deb) ... Selecting previously deselected package libjpeg62. Unpacking libjpeg62 (from .../libjpeg62_6b1-1_amd64.deb) ... Selecting previously deselected package libpng12-0. Unpacking libpng12-0 (from .../libpng12-0_1.2.44-1+squeeze4_amd64.deb) ... Selecting previously deselected package libxpm4. Unpacking libxpm4 (from .../libxpm4_1%3a3.5.8-1_amd64.deb) ... Selecting previously deselected package libgd2-xpm. Unpacking libgd2-xpm (from .../libgd2-xpm_2.0.36~rc1~dfsg-5_amd64.deb) ... Selecting previously deselected package libglu1-mesa. Unpacking libglu1-mesa (from .../libglu1-mesa_7.7.1-6_amd64.deb) ... Selecting previously deselected package libgsl0ldbl. Unpacking libgsl0ldbl (from .../libgsl0ldbl_1.14+dfsg-1_amd64.deb) ... Selecting previously deselected package libhdf4-0-alt. Unpacking libhdf4-0-alt (from .../libhdf4-0-alt_4.2r4-11_amd64.deb) ... Selecting previously deselected package x11-common. Unpacking x11-common (from .../x11-common_1%3a7.5+8+squeeze1_all.deb) ... Selecting previously deselected package libice6. Unpacking libice6 (from .../libice6_2%3a1.0.6-2_amd64.deb) ... Selecting previously deselected package libqhull5. Unpacking libqhull5 (from .../libqhull5_2009.1-1_amd64.deb) ... Selecting previously deselected package libcsiro0. Unpacking libcsiro0 (from .../libcsiro0_5.9.5-4_amd64.deb) ... Selecting previously deselected package libltdl7. Unpacking libltdl7 (from .../libltdl7_2.2.6b-2_amd64.deb) ... Selecting previously deselected package libplplot9. Unpacking libplplot9 (from .../libplplot9_5.9.5-4_amd64.deb) ... Selecting previously deselected package proj-data. Unpacking proj-data (from .../proj-data_4.7.0-1_amd64.deb) ... Selecting previously deselected package libproj0. Unpacking libproj0 (from .../libproj0_4.7.0-1_amd64.deb) ... Selecting previously deselected package libsm6. Unpacking libsm6 (from .../libsm6_2%3a1.1.1-1_amd64.deb) ... Selecting previously deselected package libxt6. Unpacking libxt6 (from .../libxt6_1%3a1.0.7-1+squeeze1_amd64.deb) ... Selecting previously deselected package libxmu6. Unpacking libxmu6 (from .../libxmu6_2%3a1.0.5-2_amd64.deb) ... Selecting previously deselected package libopengl-perl. Unpacking libopengl-perl (from .../libopengl-perl_0.62+dfsg-1_amd64.deb) ... Selecting previously deselected package pdl. Unpacking pdl (from .../pdl_1%3a2.4.7+dfsg-2_amd64.deb) ... Selecting previously deselected package libio-string-perl. Unpacking libio-string-perl (from .../libio-string-perl_1.08-2_all.deb) ... Selecting previously deselected package libdata-stag-perl. Unpacking libdata-stag-perl (from .../libdata-stag-perl_0.11-2_all.deb) ... Selecting previously deselected package bioperl. Unpacking bioperl (from .../bioperl_1.6.1-2_all.deb) ... Selecting previously deselected package liburi-perl. Unpacking liburi-perl (from .../liburi-perl_1.54-2_all.deb) ... Selecting previously deselected package libhtml-tagset-perl. Unpacking libhtml-tagset-perl (from .../libhtml-tagset-perl_3.20-2_all.deb) ... Selecting previously deselected package libhtml-parser-perl. Unpacking libhtml-parser-perl (from .../libhtml-parser-perl_3.66-1_amd64.deb) ... Selecting previously deselected package libhtml-tree-perl. Unpacking libhtml-tree-perl (from .../libhtml-tree-perl_3.23-2_all.deb) ... Selecting previously deselected package netbase. Unpacking netbase (from .../archives/netbase_4.45_all.deb) ... Selecting previously deselected package libwww-perl. Unpacking libwww-perl (from .../libwww-perl_5.836-1_all.deb) ... Selecting previously deselected package libnet-daemon-perl. Unpacking libnet-daemon-perl (from .../libnet-daemon-perl_0.43-1_all.deb) ... Selecting previously deselected package libplrpc-perl. Unpacking libplrpc-perl (from .../libplrpc-perl_0.2020-2_all.deb) ... Selecting previously deselected package libdbi-perl. Unpacking libdbi-perl (from .../libdbi-perl_1.612-1_amd64.deb) ... Setting up libdb4.7 (4.7.25-9) ... Setting up libgdbm3 (1.8.3-9) ... Setting up libgfortran3 (4.4.5-8) ... Setting up libxau6 (1:1.0.6-1) ... Setting up libxdmcp6 (1:1.0.3-2) ... Setting up libxcb1 (1.6-1+squeeze1) ... Setting up libx11-data (2:1.3.3-4+squeeze1) ... Setting up libx11-6 (2:1.3.3-4+squeeze1) ... Setting up libmpich1.0gf (1.2.7-9.1) ... Setting up fftw2 (2.1.3-22) ... Setting up libdrm2 (2.4.21-1~squeeze3) ... Setting up libxfixes3 (1:4.0.5-1+squeeze1) ... Setting up libxdamage1 (1:1.1.3-1) ... Setting up libxext6 (2:1.1.2-1+squeeze1) ... Setting up libxxf86vm1 (1:1.1.0-2+squeeze1) ... Setting up libgl1-mesa-glx (7.7.1-6) ... Setting up libxi6 (2:1.3-8) ... Setting up freeglut3 (2.6.0-1) ... Setting up libexpat1 (2.0.1-7+squeeze1) ... Setting up libfreetype6 (2.4.2-2.1+squeeze4) ... Setting up ttf-dejavu-core (2.31-1) ... Setting up fontconfig-config (2.8.0-2.1) ... Setting up libfontconfig1 (2.8.0-2.1) ... Setting up libjpeg62 (6b1-1) ... Setting up libpng12-0 (1.2.44-1+squeeze4) ... Setting up libxpm4 (1:3.5.8-1) ... Setting up libgd2-xpm (2.0.36~rc1~dfsg-5) ... Setting up libglu1-mesa (7.7.1-6) ... Setting up libgsl0ldbl (1.14+dfsg-1) ... Setting up libhdf4-0-alt (4.2r4-11) ... Setting up x11-common (1:7.5+8+squeeze1) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6 (2:1.0.6-2) ... Setting up libqhull5 (2009.1-1) ... Setting up libcsiro0 (5.9.5-4) ... Setting up libltdl7 (2.2.6b-2) ... Setting up libplplot9 (5.9.5-4) ... Setting up proj-data (4.7.0-1) ... Setting up libproj0 (4.7.0-1) ... Setting up libsm6 (2:1.1.1-1) ... Setting up libxt6 (1:1.0.7-1+squeeze1) ... Setting up libxmu6 (2:1.0.5-2) ... Setting up netbase (4.45) ... Setting up perl-modules (5.10.1-17squeeze6) ... Setting up perl (5.10.1-17squeeze6) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode. Setting up libterm-readkey-perl (2.30-4) ... Setting up libopengl-perl (0.62+dfsg-1) ... Setting up pdl (1:2.4.7+dfsg-2) ... Setting up libio-string-perl (1.08-2) ... Setting up libdata-stag-perl (0.11-2) ... Setting up bioperl (1.6.1-2) ... Setting up liburi-perl (1.54-2) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.66-1) ... Setting up libhtml-tree-perl (3.23-2) ... Setting up libwww-perl (5.836-1) ... Setting up libnet-daemon-perl (0.43-1) ... Setting up libplrpc-perl (0.2020-2) ... Setting up libdbi-perl (1.612-1) ... Setting up piuparts-depends-dummy (0.invalid.0) ... 0m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'apt-get', '-yf', 'install'] 0m16.1s INFO: Installation of ['tmp/piuparts-depends-dummy.deb'] ok 0m16.1s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmp4DzbZZ/tmp/piuparts-depends-dummy.deb 0m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m16.2s DUMP: piuparts-depends-dummy install ok installed 0m16.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m16.2s DUMP: (Reading database ... 11727 files and directories currently installed.) Removing piuparts-depends-dummy ... 0m16.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'apt-get', 'clean'] 0m16.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'apt-get', 'clean'] 0m16.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ'] 0m17.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ'] 0m18.8s ERROR: WARN: Broken symlinks: /etc/fonts/conf.d/30-defoma.conf -> /var/lib/defoma/fontconfig.d/fonts.conf 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'apt-cache', 'policy'] 0m18.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages release v=6.0.9,o=Debian,a=oldstable,n=squeeze,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'apt-cache', 'policy'] 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'apt-cache', 'policy', 'libtfbs-perl'] 0m18.8s DUMP: libtfbs-perl: Installed: (none) Candidate: 0.5.svn.20091128-1+b1 Version table: 0.5.svn.20091128-1+b1 0 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'apt-cache', 'policy', 'libtfbs-perl'] 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'apt-get', '-y', 'install', 'libtfbs-perl=0.5.svn.20091128-1+b1'] 0m19.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Recommended packages: libgd-gd2-perl libgd-gd2-noxpm-perl The following NEW packages will be installed: libtfbs-perl 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 202 kB of archives. After this operation, 766 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main libtfbs-perl amd64 0.5.svn.20091128-1+b1 [202 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 202 kB in 0s (3604 kB/s) Selecting previously deselected package libtfbs-perl. (Reading database ... 11727 files and directories currently installed.) Unpacking libtfbs-perl (from .../libtfbs-perl_0.5.svn.20091128-1+b1_amd64.deb) ... Setting up libtfbs-perl (0.5.svn.20091128-1+b1) ... 0m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'apt-get', '-y', 'install', 'libtfbs-perl=0.5.svn.20091128-1+b1'] 0m19.4s INFO: Running scripts post_install 0m19.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ'] 0m19.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ'] 0m21.3s ERROR: WARN: Broken symlinks: /etc/fonts/conf.d/30-defoma.conf -> /var/lib/defoma/fontconfig.d/fonts.conf 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'dpkg', '--get-selections', '*'] 0m21.4s DUMP: adduser install apt install base-files install base-passwd install bash install bioperl install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install fftw2 install findutils install fontconfig-config install freeglut3 install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libcsiro0 install libdata-stag-perl install libdb4.7 install libdb4.8 install libdbi-perl install libdrm2 install libexpat1 install libfontconfig1 install libfreetype6 install libgcc1 install libgd2-xpm install libgdbm3 install libgfortran3 install libgl1-mesa-glx install libglu1-mesa install libgsl0ldbl install libhdf4-0-alt install libhtml-parser-perl install libhtml-tagset-perl install libhtml-tree-perl install libice6 install libio-string-perl install libjpeg62 install liblocale-gettext-perl install libltdl7 install liblzma2 install libmpich1.0gf install libncurses5 install libnet-daemon-perl install libopengl-perl install libpam-modules install libpam-runtime install libpam0g install libplplot9 install libplrpc-perl install libpng12-0 install libproj0 install libqhull5 install libreadline6 install libselinux1 install libsepol1 install libslang2 install libsm6 install libss2 install libstdc++6 install libterm-readkey-perl install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libtfbs-perl install liburi-perl install libusb-0.1-4 install libuuid1 install libwww-perl install libx11-6 install libx11-data install libxau6 install libxcb1 install libxdamage1 install libxdmcp6 install libxext6 install libxfixes3 install libxi6 install libxmu6 install libxpm4 install libxt6 install libxxf86vm1 install login install lsb-base install mawk install mount install ncurses-base install ncurses-bin install netbase install passwd install pdl install perl install perl-base install perl-modules install proj-data install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install ttf-dejavu-core install tzdata install ucf install util-linux install x11-common install xz-utils install zlib1g install 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'dpkg', '--get-selections', '*'] 0m22.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', '-ac'] 0m23.4s DUMP: debsums: no md5sums for mawk debsums: no md5sums for netbase 0m23.4s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', '-ac'] 0m23.4s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m23.5s DUMP: 0.11.6~bpo70+1 0m23.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m23.5s INFO: Running adequate version 0.11.6~bpo70+1 now. 0m23.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'libtfbs-perl'] 0m23.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'libtfbs-perl'] 0m23.6s INFO: Running scripts pre_remove 0m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m23.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m23.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m23.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m23.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/pre_remove_exceptions'] 0m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/pre_remove_exceptions'] 0m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'apt-get', 'remove', 'libltdl7', 'libx11-data', 'freeglut3', 'libgl1-mesa-glx', 'libplrpc-perl', 'libxext6', 'libfreetype6', 'libdbi-perl', 'libice6', 'libgd2-xpm', 'libsm6', 'libproj0', 'bioperl', 'libwww-perl', 'perl-modules', 'libxpm4', 'proj-data', 'libnet-daemon-perl', 'libxdamage1', 'libcsiro0', 'perl', 'pdl', 'libxi6', 'libgfortran3', 'libgdbm3', 'libterm-readkey-perl', 'libgsl0ldbl', 'libdata-stag-perl', 'libpng12-0', 'netbase', 'libx11-6', 'libhtml-parser-perl', 'libopengl-perl', 'libxfixes3', 'libdrm2', 'libjpeg62', 'libmpich1.0gf', 'libplplot9', 'liburi-perl', 'libqhull5', 'libxmu6', 'libhdf4-0-alt', 'x11-common', 'libglu1-mesa', 'ttf-dejavu-core', 'libxt6', 'libxxf86vm1', 'libhtml-tree-perl', 'fftw2', 'fontconfig-config', 'libxcb1', 'libxau6', 'libdb4.7', 'libio-string-perl', 'libexpat1', 'libhtml-tagset-perl', 'libxdmcp6', 'libfontconfig1', 'libtfbs-perl'] 0m24.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bioperl fftw2 fontconfig-config freeglut3 libcsiro0 libdata-stag-perl libdb4.7 libdbi-perl libdrm2 libexpat1 libfontconfig1 libfreetype6 libgd2-xpm libgdbm3 libgfortran3 libgl1-mesa-glx libglu1-mesa libgsl0ldbl libhdf4-0-alt libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libice6 libio-string-perl libjpeg62 libltdl7 libmpich1.0gf libnet-daemon-perl libopengl-perl libplplot9 libplrpc-perl libpng12-0 libproj0 libqhull5 libsm6 libterm-readkey-perl libtfbs-perl liburi-perl libwww-perl libx11-6 libx11-data libxau6 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxmu6 libxpm4 libxt6 libxxf86vm1 netbase pdl perl perl-modules proj-data ttf-dejavu-core x11-common 0 upgraded, 0 newly installed, 59 to remove and 0 not upgraded. After this operation, 111 MB disk space will be freed. (Reading database ... 11829 files and directories currently installed.) Removing libtfbs-perl ... Removing bioperl ... Removing pdl ... Removing fftw2 ... Removing libgd2-xpm ... Removing libfontconfig1 ... Removing fontconfig-config ... Removing libopengl-perl ... Removing freeglut3 ... Removing libplplot9 ... Removing libcsiro0 ... Removing libdata-stag-perl ... Removing libdbi-perl ... Removing libplrpc-perl ... Removing libwww-perl ... Removing libhtml-tree-perl ... Removing libhtml-parser-perl ... Removing liburi-perl ... Removing libterm-readkey-perl ... Removing libnet-daemon-perl ... Removing libio-string-perl ... Removing libhtml-tagset-perl ... Removing libglu1-mesa ... Removing libgl1-mesa-glx ... Removing libdrm2 ... Removing libexpat1 ... Removing libfreetype6 ... Removing libmpich1.0gf ... Removing libgfortran3 ... Removing libgsl0ldbl ... Removing libhdf4-0-alt ... Removing libxmu6 ... Removing libxt6 ... Removing libsm6 ... Removing libice6 ... Removing libjpeg62 ... Removing libltdl7 ... Removing libpng12-0 ... Removing libproj0 ... Removing libqhull5 ... Removing libxxf86vm1 ... Removing libxpm4 ... Removing libxi6 ... Removing libxdamage1 ... Removing libxfixes3 ... Removing libxext6 ... Removing libx11-6 ... Removing libx11-data ... Removing libxcb1 ... Removing libxau6 ... Removing libxdmcp6 ... Removing netbase ... Removing proj-data ... Removing ttf-dejavu-core ... Removing x11-common ... invoke-rc.d: policy-rc.d denied execution of stop. Removing perl ... Removing perl-modules ... Removing libdb4.7 ... Removing libgdbm3 ... 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'apt-get', 'remove', 'libltdl7', 'libx11-data', 'freeglut3', 'libgl1-mesa-glx', 'libplrpc-perl', 'libxext6', 'libfreetype6', 'libdbi-perl', 'libice6', 'libgd2-xpm', 'libsm6', 'libproj0', 'bioperl', 'libwww-perl', 'perl-modules', 'libxpm4', 'proj-data', 'libnet-daemon-perl', 'libxdamage1', 'libcsiro0', 'perl', 'pdl', 'libxi6', 'libgfortran3', 'libgdbm3', 'libterm-readkey-perl', 'libgsl0ldbl', 'libdata-stag-perl', 'libpng12-0', 'netbase', 'libx11-6', 'libhtml-parser-perl', 'libopengl-perl', 'libxfixes3', 'libdrm2', 'libjpeg62', 'libmpich1.0gf', 'libplplot9', 'liburi-perl', 'libqhull5', 'libxmu6', 'libhdf4-0-alt', 'x11-common', 'libglu1-mesa', 'ttf-dejavu-core', 'libxt6', 'libxxf86vm1', 'libhtml-tree-perl', 'fftw2', 'fontconfig-config', 'libxcb1', 'libxau6', 'libdb4.7', 'libio-string-perl', 'libexpat1', 'libhtml-tagset-perl', 'libxdmcp6', 'libfontconfig1', 'libtfbs-perl'] 0m24.8s INFO: Running scripts post_remove 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/post_remove_exceptions_lenny'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/post_remove_exceptions_lenny'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/post_remove_extras'] 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/post_remove_extras'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'dpkg', '--purge', 'libltdl7', 'libx11-data', 'freeglut3', 'libgl1-mesa-glx', 'libplrpc-perl', 'libxext6', 'libfreetype6', 'libdbi-perl', 'libice6', 'libgd2-xpm', 'libsm6', 'libproj0', 'bioperl', 'libwww-perl', 'perl-modules', 'libxpm4', 'proj-data', 'libnet-daemon-perl', 'libxdamage1', 'libcsiro0', 'perl', 'pdl', 'libxi6', 'libgfortran3', 'libgdbm3', 'libterm-readkey-perl', 'libgsl0ldbl', 'libdata-stag-perl', 'libpng12-0', 'netbase', 'libx11-6', 'libhtml-parser-perl', 'libopengl-perl', 'libxfixes3', 'libdrm2', 'libjpeg62', 'libmpich1.0gf', 'libplplot9', 'liburi-perl', 'libqhull5', 'libxmu6', 'libhdf4-0-alt', 'x11-common', 'libglu1-mesa', 'ttf-dejavu-core', 'libxt6', 'libxxf86vm1', 'libhtml-tree-perl', 'fftw2', 'fontconfig-config', 'libxcb1', 'libxau6', 'libdb4.7', 'libio-string-perl', 'libexpat1', 'libhtml-tagset-perl', 'libxdmcp6', 'libfontconfig1'] 0m25.4s DUMP: (Reading database ... 6316 files and directories currently installed.) Removing libltdl7 ... Purging configuration files for libltdl7 ... dpkg: warning: ignoring request to remove libx11-data which isn't installed. Removing freeglut3 ... Purging configuration files for freeglut3 ... Removing libgl1-mesa-glx ... Purging configuration files for libgl1-mesa-glx ... dpkg: warning: ignoring request to remove libplrpc-perl which isn't installed. Removing libxext6 ... Purging configuration files for libxext6 ... Removing libfreetype6 ... Purging configuration files for libfreetype6 ... dpkg: warning: ignoring request to remove libdbi-perl which isn't installed. Removing libice6 ... Purging configuration files for libice6 ... Removing libgd2-xpm ... Purging configuration files for libgd2-xpm ... Removing libsm6 ... Purging configuration files for libsm6 ... Removing libproj0 ... Purging configuration files for libproj0 ... dpkg: warning: ignoring request to remove bioperl which isn't installed. dpkg: warning: ignoring request to remove libwww-perl which isn't installed. Removing perl-modules ... Purging configuration files for perl-modules ... Removing libxpm4 ... Purging configuration files for libxpm4 ... dpkg: warning: ignoring request to remove proj-data which isn't installed. dpkg: warning: ignoring request to remove libnet-daemon-perl which isn't installed. Removing libxdamage1 ... Purging configuration files for libxdamage1 ... Removing libcsiro0 ... Purging configuration files for libcsiro0 ... dpkg: warning: ignoring request to remove perl which isn't installed. Removing pdl ... Purging configuration files for pdl ... Removing libxi6 ... Purging configuration files for libxi6 ... Removing libgfortran3 ... Purging configuration files for libgfortran3 ... Removing libgdbm3 ... Purging configuration files for libgdbm3 ... dpkg: warning: ignoring request to remove libterm-readkey-perl which isn't installed. Removing libgsl0ldbl ... Purging configuration files for libgsl0ldbl ... dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed. Removing libpng12-0 ... Purging configuration files for libpng12-0 ... Removing netbase ... Purging configuration files for netbase ... Removing libx11-6 ... Purging configuration files for libx11-6 ... dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed. dpkg: warning: ignoring request to remove libopengl-perl which isn't installed. Removing libxfixes3 ... Purging configuration files for libxfixes3 ... Removing libdrm2 ... Purging configuration files for libdrm2 ... dpkg: warning: ignoring request to remove libjpeg62 which isn't installed. Removing libmpich1.0gf ... Purging configuration files for libmpich1.0gf ... Removing libplplot9 ... Purging configuration files for libplplot9 ... dpkg: warning: ignoring request to remove liburi-perl which isn't installed. Removing libqhull5 ... Purging configuration files for libqhull5 ... Removing libxmu6 ... Purging configuration files for libxmu6 ... Removing libhdf4-0-alt ... Purging configuration files for libhdf4-0-alt ... Removing x11-common ... Purging configuration files for x11-common ... Removing libglu1-mesa ... Purging configuration files for libglu1-mesa ... dpkg: warning: ignoring request to remove ttf-dejavu-core which isn't installed. Removing libxt6 ... Purging configuration files for libxt6 ... Removing libxxf86vm1 ... Purging configuration files for libxxf86vm1 ... dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed. Removing fftw2 ... Purging configuration files for fftw2 ... Removing fontconfig-config ... Purging configuration files for fontconfig-config ... Removing libxcb1 ... Purging configuration files for libxcb1 ... Removing libxau6 ... Purging configuration files for libxau6 ... dpkg: warning: ignoring request to remove libdb4.7 which isn't installed. dpkg: warning: ignoring request to remove libio-string-perl which isn't installed. Removing libexpat1 ... Purging configuration files for libexpat1 ... dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed. Removing libxdmcp6 ... Purging configuration files for libxdmcp6 ... Removing libfontconfig1 ... Purging configuration files for libfontconfig1 ... 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'dpkg', '--purge', 'libltdl7', 'libx11-data', 'freeglut3', 'libgl1-mesa-glx', 'libplrpc-perl', 'libxext6', 'libfreetype6', 'libdbi-perl', 'libice6', 'libgd2-xpm', 'libsm6', 'libproj0', 'bioperl', 'libwww-perl', 'perl-modules', 'libxpm4', 'proj-data', 'libnet-daemon-perl', 'libxdamage1', 'libcsiro0', 'perl', 'pdl', 'libxi6', 'libgfortran3', 'libgdbm3', 'libterm-readkey-perl', 'libgsl0ldbl', 'libdata-stag-perl', 'libpng12-0', 'netbase', 'libx11-6', 'libhtml-parser-perl', 'libopengl-perl', 'libxfixes3', 'libdrm2', 'libjpeg62', 'libmpich1.0gf', 'libplplot9', 'liburi-perl', 'libqhull5', 'libxmu6', 'libhdf4-0-alt', 'x11-common', 'libglu1-mesa', 'ttf-dejavu-core', 'libxt6', 'libxxf86vm1', 'libhtml-tree-perl', 'fftw2', 'fontconfig-config', 'libxcb1', 'libxau6', 'libdb4.7', 'libio-string-perl', 'libexpat1', 'libhtml-tagset-perl', 'libxdmcp6', 'libfontconfig1'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'dpkg', '--purge', 'libtfbs-perl'] 0m25.4s DUMP: dpkg: warning: ignoring request to remove libtfbs-perl which isn't installed. 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'dpkg', '--purge', 'libtfbs-perl'] 0m25.4s INFO: Running scripts post_purge 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/post_purge_exceptions'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'tmp/scripts/post_purge_exceptions'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'dpkg', '--purge', '--pending'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'dpkg', '--purge', '--pending'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'dpkg', '--remove', '--pending'] 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'dpkg', '--remove', '--pending'] 0m25.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ'] 0m25.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ'] 0m26.5s DEBUG: No broken symlinks as far as we can find. 0m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'dpkg-divert', '--list'] 0m26.5s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'dpkg-divert', '--list'] 0m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'apt-get', 'clean'] 0m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'apt-get', 'clean'] 0m27.5s DEBUG: File was renamed: /etc/rcS.d/S11mountnfs.sh => /etc/rcS.d/S12mountnfs.sh 0m27.5s DEBUG: File was renamed: /etc/rc0.d/K04umountroot => /etc/rc0.d/K05umountroot 0m27.6s DEBUG: File was renamed: /etc/rcS.d/S14stop-bootlogd-single => /etc/rcS.d/S15stop-bootlogd-single 0m27.6s DEBUG: File was renamed: /etc/rcS.d/S12mountnfs-bootclean.sh => /etc/rcS.d/S13mountnfs-bootclean.sh 0m27.6s DEBUG: File was renamed: /etc/rc0.d/K05halt => /etc/rc0.d/K06halt 0m27.6s DEBUG: File was renamed: /etc/rc0.d/K03umountfs => /etc/rc0.d/K04umountfs 0m27.6s DEBUG: File was renamed: /etc/rcS.d/S13bootmisc.sh => /etc/rcS.d/S14bootmisc.sh 0m27.6s DEBUG: File was renamed: /etc/rc6.d/K03umountfs => /etc/rc6.d/K04umountfs 0m27.6s DEBUG: File was renamed: /etc/rc6.d/K05reboot => /etc/rc6.d/K06reboot 0m27.6s DEBUG: File was renamed: /etc/rc6.d/K04umountroot => /etc/rc6.d/K05umountroot 0m27.6s INFO: PASS: Installation and purging test. 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'umount', '/proc'] 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ', 'umount', '/proc'] 0m27.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ'] 0m28.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp4DzbZZ'] 0m28.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp4DzbZZ 0m28.0s INFO: PASS: All tests. 0m28.0s INFO: piuparts run ends. ret=0 End: 2014-05-18 07:39:03 UTC