Start: 2014-04-01 07:00:58 UTC Package: meep-openmpi Priority: optional Section: science Installed-Size: 684 Maintainer: Thorsten Alteholz Architecture: amd64 Version: 1.1.1-7 Depends: guile-1.8-libs, libatlas3gf-base, libc6 (>= 2.2.5), libctl3 (>= 3.0.3), libfftw3-3, libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3), libgmp3c2, libgsl0ldbl (>= 1.9), libharminv2 (>= 1.3.1), libhdf5-openmpi-1.8.4, libltdl7 (>= 2.2.6b), libmeep-openmpi6, libopenmpi1.3, libstdc++6 (>= 4.1.1), zlib1g (>= 1:1.1.4), openmpi-bin Filename: pool/main/m/meep-openmpi/meep-openmpi_1.1.1-7_amd64.deb Size: 277440 MD5sum: 9abbc0620f47477d4e3542a2d1fdd209 SHA1: 3b4cef92b8b0fcaf7d131a68be458564d535551d SHA256: 104a79c8063b26fda11d5028ef50b5fcc80eccfdb28676e00c1e8a10c826502d Description: software package for FDTD simulation, parallel (OpenMPI) version Meep (or MEEP) is a free finite-difference time-domain (FDTD) simulation software package developed at MIT to model electromagnetic systems. . Its features include: * Simulation in 1d, 2d, 3d, and cylindrical coordinates. * Distributed memory parallelism on any system supporting the MPI standard. * Dispersive (including loss/gain) and nonlinear (Kerr & Pockels) materials. Magnetic permeability and electric/magnetic conductivities. * PML absorbing boundaries and/or perfect conductor and/or Bloch-periodic boundary conditions. * Exploitation of symmetries to reduce the computation size . even/odd mirror symmetries and 90/180 degree rotations. * Complete scriptability - either via a Scheme scripting front-end (as in libctl and MPB), or callable as a C++ library. * Field output in the HDF5 standard scientific data format, supported by many visualization tools. * Arbitrary material and source distributions. * Field analyses including flux spectra, frequency extraction, and energy integrals; completely programmable. * Multi-parameter optimization, root-finding, integration, etcetera (via libctl). . This package contains the MPI version of the software. As opposed to meep-mpi this package also contains the OpenMPI version of libhdf5. Homepage: http://ab-initio.mit.edu/wiki/index.php/Meep Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 35m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt meep-openmpi=1.1.1-7 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at http://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.57.1~201403012113~0.57-23-gfd8571c starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt meep-openmpi=1.1.1-7 0m0.0s INFO: Running on: Linux piu-slave-bm-a 3.2.0-4-amd64 #1 SMP Debian 3.2.54-2 x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpBsgoen 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpBsgoen 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpBsgoen', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpBsgoen', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.8s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ squeeze main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'apt-get', 'update'] 0m1.9s DUMP: Hit http://mirror.bm.debian.org squeeze Release.gpg Ign http://mirror.bm.debian.org/debian/ squeeze/main Translation-en Hit http://mirror.bm.debian.org squeeze Release Hit http://mirror.bm.debian.org squeeze/main amd64 Packages Reading package lists... 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'apt-get', 'update'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpBsgoen/tmp/scripts/ 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts-squeeze to /srv/piuparts.debian.org/tmp/tmpBsgoen/tmp/scripts/ 0m2.2s INFO: Running scripts post_setup 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/post_setup_experimental'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/post_setup_experimental'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/post_setup_forbid_home'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/post_setup_forbid_home'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m3.1s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 320 kB of archives. After this operation, 1532 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main adduser all 3.112+nmu2 [250 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main ucf all 3.0025+nmu1 [69.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 320 kB in 0s (15.5 MB/s) Selecting previously deselected package adduser. (Reading database ... 6135 files and directories currently installed.) Unpacking adduser (from .../adduser_3.112+nmu2_all.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu1_all.deb) ... Moving old data out of the way Setting up adduser (3.112+nmu2) ... Setting up ucf (3.0025+nmu1) ... 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'apt-get', 'clean'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'apt-get', 'clean'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'dpkg', '--get-selections', '*'] 0m3.6s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libgcc1 install liblocale-gettext-perl install liblzma2 install libncurses5 install libpam-modules install libpam-runtime install libpam0g install libreadline6 install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mount install ncurses-base install ncurses-bin install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'dpkg', '--get-selections', '*'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'dpkg-divert', '--list'] 0m3.7s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'dpkg-divert', '--list'] 0m3.7s INFO: apt-cache does not know about any of the requested packages 0m3.7s INFO: Running scripts pre_test 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/pre_test_root_password'] 0m3.7s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/pre_test_root_password'] 0m3.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBsgoen'] 0m4.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBsgoen'] 0m4.8s DEBUG: No broken symlinks as far as we can find. 0m4.8s INFO: Running scripts pre_install 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/pre_install_database-server'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/pre_install_database-server'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/pre_install_exceptions'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/pre_install_exceptions'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/pre_install_extras'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/pre_install_extras'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'apt-cache', 'show', 'meep-openmpi=1.1.1-7'] 0m4.9s DUMP: Package: meep-openmpi Priority: optional Section: science Installed-Size: 684 Maintainer: Thorsten Alteholz Architecture: amd64 Version: 1.1.1-7 Depends: guile-1.8-libs, libatlas3gf-base, libc6 (>= 2.2.5), libctl3 (>= 3.0.3), libfftw3-3, libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3), libgmp3c2, libgsl0ldbl (>= 1.9), libharminv2 (>= 1.3.1), libhdf5-openmpi-1.8.4, libltdl7 (>= 2.2.6b), libmeep-openmpi6, libopenmpi1.3, libstdc++6 (>= 4.1.1), zlib1g (>= 1:1.1.4), openmpi-bin Filename: pool/main/m/meep-openmpi/meep-openmpi_1.1.1-7_amd64.deb Size: 277440 MD5sum: 9abbc0620f47477d4e3542a2d1fdd209 SHA1: 3b4cef92b8b0fcaf7d131a68be458564d535551d SHA256: 104a79c8063b26fda11d5028ef50b5fcc80eccfdb28676e00c1e8a10c826502d Description: software package for FDTD simulation, parallel (OpenMPI) version Meep (or MEEP) is a free finite-difference time-domain (FDTD) simulation software package developed at MIT to model electromagnetic systems. . Its features include: * Simulation in 1d, 2d, 3d, and cylindrical coordinates. * Distributed memory parallelism on any system supporting the MPI standard. * Dispersive (including loss/gain) and nonlinear (Kerr & Pockels) materials. Magnetic permeability and electric/magnetic conductivities. * PML absorbing boundaries and/or perfect conductor and/or Bloch-periodic boundary conditions. * Exploitation of symmetries to reduce the computation size . even/odd mirror symmetries and 90/180 degree rotations. * Complete scriptability - either via a Scheme scripting front-end (as in libctl and MPB), or callable as a C++ library. * Field output in the HDF5 standard scientific data format, supported by many visualization tools. * Arbitrary material and source distributions. * Field analyses including flux spectra, frequency extraction, and energy integrals; completely programmable. * Multi-parameter optimization, root-finding, integration, etcetera (via libctl). . This package contains the MPI version of the software. As opposed to meep-mpi this package also contains the OpenMPI version of libhdf5. Homepage: http://ab-initio.mit.edu/wiki/index.php/Meep 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'apt-cache', 'show', 'meep-openmpi=1.1.1-7'] 0m4.9s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed Depends: guile-1.8-libs, libatlas3gf-base, libc6 (>= 2.2.5), libctl3 (>= 3.0.3), libfftw3-3, libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3), libgmp3c2, libgsl0ldbl (>= 1.9), libharminv2 (>= 1.3.1), libhdf5-openmpi-1.8.4, libltdl7 (>= 2.2.6b), libmeep-openmpi6, libopenmpi1.3, libstdc++6 (>= 4.1.1), zlib1g (>= 1:1.1.4), openmpi-bin 0m4.9s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpMYfS7O/piuparts-depends-dummy'] 0m4.9s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpMYfS7O/piuparts-depends-dummy.deb'. 0m4.9s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpMYfS7O/piuparts-depends-dummy'] 0m4.9s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpMYfS7O/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpBsgoen/tmp 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m5.0s DUMP: Selecting previously deselected package piuparts-depends-dummy. (Reading database ... 6258 files and directories currently installed.) Unpacking piuparts-depends-dummy (from tmp/piuparts-depends-dummy.deb) ... dpkg: dependency problems prevent configuration of piuparts-depends-dummy: piuparts-depends-dummy depends on guile-1.8-libs; however: Package guile-1.8-libs is not installed. piuparts-depends-dummy depends on libatlas3gf-base; however: Package libatlas3gf-base is not installed. piuparts-depends-dummy depends on libctl3 (>= 3.0.3); however: Package libctl3 is not installed. piuparts-depends-dummy depends on libfftw3-3; however: Package libfftw3-3 is not installed. piuparts-depends-dummy depends on libgfortran3 (>= 4.3); however: Package libgfortran3 is not installed. piuparts-depends-dummy depends on libgmp3c2; however: Package libgmp3c2 is not installed. piuparts-depends-dummy depends on libgsl0ldbl (>= 1.9); however: Package libgsl0ldbl is not installed. piuparts-depends-dummy depends on libharminv2 (>= 1.3.1); however: Package libharminv2 is not installed. piuparts-depends-dummy depends on libhdf5-openmpi-1.8.4; however: Package libhdf5-openmpi-1.8.4 is not installed. piuparts-depends-dummy depends on libltdl7 (>= 2.2.6b); however: Package libltdl7 is not installed. piuparts-depends-dummy depends on libmeep-openmpi6; however: Package libmeep-openmpi6 is not installed. piuparts-depends-dummy depends on libopenmpi1.3; however: Package libopenmpi1.3 is not installed. piuparts-depends-dummy depends on openmpi-bin; however: Package openmpi-bin is not installed. dpkg: error processing piuparts-depends-dummy (--install): dependency problems - leaving unconfigured Errors were encountered while processing: piuparts-depends-dummy 0m5.0s DEBUG: Command failed (status=1), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'apt-get', '-yf', 'install'] 0m13.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Correcting dependencies... Done The following extra packages will be installed: guile-1.8-libs libatlas3gf-base libctl3 libfftw3-3 libgfortran3 libgmp3c2 libgsl0ldbl libharminv2 libhdf5-openmpi-1.8.4 libibverbs1 libltdl7 libmeep-openmpi6 libnuma1 libopenmpi1.3 libtorque2 openmpi-bin openmpi-common Suggested packages: libblas3gf liblapack3gf libfftw3-dev gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html gfortran Recommended packages: openmpi-checkpoint The following NEW packages will be installed: guile-1.8-libs libatlas3gf-base libctl3 libfftw3-3 libgfortran3 libgmp3c2 libgsl0ldbl libharminv2 libhdf5-openmpi-1.8.4 libibverbs1 libltdl7 libmeep-openmpi6 libnuma1 libopenmpi1.3 libtorque2 openmpi-bin openmpi-common 0 upgraded, 17 newly installed, 0 to remove and 0 not upgraded. 1 not fully installed or removed. Need to get 14.0 MB of archives. After this operation, 38.9 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main libgmp3c2 amd64 2:4.3.2+dfsg-1 [313 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main libltdl7 amd64 2.2.6b-2 [296 kB] Get:3 http://mirror.bm.debian.org/debian/ squeeze/main guile-1.8-libs amd64 1.8.7+1-3 [752 kB] Get:4 http://mirror.bm.debian.org/debian/ squeeze/main libgfortran3 amd64 4.4.5-8 [291 kB] Get:5 http://mirror.bm.debian.org/debian/ squeeze/main libatlas3gf-base amd64 3.8.3-27 [6200 kB] Get:6 http://mirror.bm.debian.org/debian/ squeeze/main libctl3 amd64 3.1.0-2 [101 kB] Get:7 http://mirror.bm.debian.org/debian/ squeeze/main libfftw3-3 amd64 3.2.2-1 [1399 kB] Get:8 http://mirror.bm.debian.org/debian/ squeeze/main libgsl0ldbl amd64 1.14+dfsg-1 [1024 kB] Get:9 http://mirror.bm.debian.org/debian/ squeeze/main libharminv2 amd64 1.3.1-7 [17.9 kB] Get:10 http://mirror.bm.debian.org/debian/ squeeze/main libibverbs1 amd64 1.1.3-2 [33.7 kB] Get:11 http://mirror.bm.debian.org/debian/ squeeze/main libnuma1 amd64 2.0.5-1 [26.7 kB] Get:12 http://mirror.bm.debian.org/debian/ squeeze/main libtorque2 amd64 2.4.8+dfsg-9squeeze3 [115 kB] Get:13 http://mirror.bm.debian.org/debian/ squeeze/main libopenmpi1.3 amd64 1.4.2-4 [1400 kB] Get:14 http://mirror.bm.debian.org/debian/ squeeze/main libhdf5-openmpi-1.8.4 amd64 1.8.4-patch1-2 [1357 kB] Get:15 http://mirror.bm.debian.org/debian/ squeeze/main libmeep-openmpi6 amd64 1.1.1-7 [395 kB] Get:16 http://mirror.bm.debian.org/debian/ squeeze/main openmpi-common all 1.4.2-4 [89.5 kB] Get:17 http://mirror.bm.debian.org/debian/ squeeze/main openmpi-bin amd64 1.4.2-4 [165 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.0 MB in 7s (1887 kB/s) Selecting previously deselected package libgmp3c2. (Reading database ... 6258 files and directories currently installed.) Unpacking libgmp3c2 (from .../libgmp3c2_2%3a4.3.2+dfsg-1_amd64.deb) ... Selecting previously deselected package libltdl7. Unpacking libltdl7 (from .../libltdl7_2.2.6b-2_amd64.deb) ... Selecting previously deselected package guile-1.8-libs. Unpacking guile-1.8-libs (from .../guile-1.8-libs_1.8.7+1-3_amd64.deb) ... Selecting previously deselected package libgfortran3. Unpacking libgfortran3 (from .../libgfortran3_4.4.5-8_amd64.deb) ... Selecting previously deselected package libatlas3gf-base. Unpacking libatlas3gf-base (from .../libatlas3gf-base_3.8.3-27_amd64.deb) ... Selecting previously deselected package libctl3. Unpacking libctl3 (from .../libctl3_3.1.0-2_amd64.deb) ... Selecting previously deselected package libfftw3-3. Unpacking libfftw3-3 (from .../libfftw3-3_3.2.2-1_amd64.deb) ... Selecting previously deselected package libgsl0ldbl. Unpacking libgsl0ldbl (from .../libgsl0ldbl_1.14+dfsg-1_amd64.deb) ... Selecting previously deselected package libharminv2. Unpacking libharminv2 (from .../libharminv2_1.3.1-7_amd64.deb) ... Selecting previously deselected package libibverbs1. Unpacking libibverbs1 (from .../libibverbs1_1.1.3-2_amd64.deb) ... Selecting previously deselected package libnuma1. Unpacking libnuma1 (from .../libnuma1_2.0.5-1_amd64.deb) ... Selecting previously deselected package libtorque2. Unpacking libtorque2 (from .../libtorque2_2.4.8+dfsg-9squeeze3_amd64.deb) ... Selecting previously deselected package libopenmpi1.3. Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.2-4_amd64.deb) ... Selecting previously deselected package libhdf5-openmpi-1.8.4. Unpacking libhdf5-openmpi-1.8.4 (from .../libhdf5-openmpi-1.8.4_1.8.4-patch1-2_amd64.deb) ... Selecting previously deselected package libmeep-openmpi6. Unpacking libmeep-openmpi6 (from .../libmeep-openmpi6_1.1.1-7_amd64.deb) ... Selecting previously deselected package openmpi-common. Unpacking openmpi-common (from .../openmpi-common_1.4.2-4_all.deb) ... Selecting previously deselected package openmpi-bin. Unpacking openmpi-bin (from .../openmpi-bin_1.4.2-4_amd64.deb) ... Setting up libgmp3c2 (2:4.3.2+dfsg-1) ... Setting up libltdl7 (2.2.6b-2) ... Setting up guile-1.8-libs (1.8.7+1-3) ... Setting up libgfortran3 (4.4.5-8) ... Setting up libatlas3gf-base (3.8.3-27) ... update-alternatives: using /usr/lib/atlas-base/atlas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode. update-alternatives: using /usr/lib/atlas-base/atlas/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode. Setting up libctl3 (3.1.0-2) ... Setting up libfftw3-3 (3.2.2-1) ... Setting up libgsl0ldbl (1.14+dfsg-1) ... Setting up libharminv2 (1.3.1-7) ... Setting up libibverbs1 (1.1.3-2) ... Setting up libnuma1 (2.0.5-1) ... Setting up libtorque2 (2.4.8+dfsg-9squeeze3) ... Setting up libopenmpi1.3 (1.4.2-4) ... Setting up libhdf5-openmpi-1.8.4 (1.8.4-patch1-2) ... Setting up libmeep-openmpi6 (1.1.1-7) ... Setting up openmpi-common (1.4.2-4) ... Setting up openmpi-bin (1.4.2-4) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode. Setting up piuparts-depends-dummy (0.invalid.0) ... 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'apt-get', '-yf', 'install'] 0m13.9s INFO: Installation of ['tmp/piuparts-depends-dummy.deb'] ok 0m13.9s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpBsgoen/tmp/piuparts-depends-dummy.deb 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m13.9s DUMP: piuparts-depends-dummy install ok installed 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m13.9s DUMP: (Reading database ... 6835 files and directories currently installed.) Removing piuparts-depends-dummy ... 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'apt-get', 'clean'] 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'apt-get', 'clean'] 0m14.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBsgoen'] 0m14.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBsgoen'] 0m15.6s DEBUG: No broken symlinks as far as we can find. 0m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'apt-cache', 'policy'] 0m15.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages release v=6.0.9,o=Debian,a=oldstable,n=squeeze,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 0m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'apt-cache', 'policy'] 0m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'apt-cache', 'policy', 'meep-openmpi'] 0m15.6s DUMP: meep-openmpi: Installed: (none) Candidate: 1.1.1-7 Version table: 1.1.1-7 0 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages 0m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'apt-cache', 'policy', 'meep-openmpi'] 0m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'apt-get', '-y', 'install', 'meep-openmpi=1.1.1-7'] 0m16.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: meep-openmpi 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 277 kB of archives. After this operation, 700 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main meep-openmpi amd64 1.1.1-7 [277 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 277 kB in 0s (2308 kB/s) Selecting previously deselected package meep-openmpi. (Reading database ... 6835 files and directories currently installed.) Unpacking meep-openmpi (from .../meep-openmpi_1.1.1-7_amd64.deb) ... Setting up meep-openmpi (1.1.1-7) ... 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'apt-get', '-y', 'install', 'meep-openmpi=1.1.1-7'] 0m16.3s INFO: Running scripts post_install 0m16.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBsgoen'] 0m16.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBsgoen'] 0m17.5s DEBUG: No broken symlinks as far as we can find. 0m17.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'dpkg', '--get-selections', '*'] 0m17.5s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install guile-1.8-libs install gzip install hostname install initscripts install insserv install libacl1 install libatlas3gf-base install libattr1 install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libctl3 install libdb4.8 install libfftw3-3 install libgcc1 install libgfortran3 install libgmp3c2 install libgsl0ldbl install libharminv2 install libhdf5-openmpi-1.8.4 install libibverbs1 install liblocale-gettext-perl install libltdl7 install liblzma2 install libmeep-openmpi6 install libncurses5 install libnuma1 install libopenmpi1.3 install libpam-modules install libpam-runtime install libpam0g install libreadline6 install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libtorque2 install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install meep-openmpi install mount install ncurses-base install ncurses-bin install openmpi-bin install openmpi-common install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m17.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'dpkg', '--get-selections', '*'] 0m18.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpBsgoen', '-ac'] 0m18.8s DUMP: debsums: no md5sums for mawk 0m18.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpBsgoen', '-ac'] 0m18.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m18.8s DUMP: 0.11.3~bpo70+1 0m18.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m18.8s INFO: Running adequate version 0.11.3~bpo70+1 now. 0m18.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'meep-openmpi'] 0m18.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'meep-openmpi'] 0m18.9s INFO: Running scripts pre_remove 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/pre_remove_exceptions'] 0m19.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/pre_remove_exceptions'] 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'apt-get', 'remove', 'libltdl7', 'libatlas3gf-base', 'libibverbs1', 'openmpi-common', 'openmpi-bin', 'libgmp3c2', 'libharminv2', 'libhdf5-openmpi-1.8.4', 'libctl3', 'libgfortran3', 'libmeep-openmpi6', 'libgsl0ldbl', 'libfftw3-3', 'libopenmpi1.3', 'libnuma1', 'guile-1.8-libs', 'libtorque2', 'meep-openmpi'] 0m19.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: guile-1.8-libs libatlas3gf-base libctl3 libfftw3-3 libgfortran3 libgmp3c2 libgsl0ldbl libharminv2 libhdf5-openmpi-1.8.4 libibverbs1 libltdl7 libmeep-openmpi6 libnuma1 libopenmpi1.3 libtorque2 meep-openmpi openmpi-bin openmpi-common 0 upgraded, 0 newly installed, 18 to remove and 0 not upgraded. After this operation, 39.6 MB disk space will be freed. (Reading database ... 6844 files and directories currently installed.) Removing meep-openmpi ... Removing libctl3 ... Removing guile-1.8-libs ... Removing libmeep-openmpi6 ... Removing libharminv2 ... Removing libatlas3gf-base ... Removing libfftw3-3 ... Removing openmpi-bin ... Removing libhdf5-openmpi-1.8.4 ... Removing libopenmpi1.3 ... Removing libgfortran3 ... Removing libgmp3c2 ... Removing libgsl0ldbl ... Removing libibverbs1 ... Removing libltdl7 ... Removing libnuma1 ... Removing libtorque2 ... Removing openmpi-common ... 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'apt-get', 'remove', 'libltdl7', 'libatlas3gf-base', 'libibverbs1', 'openmpi-common', 'openmpi-bin', 'libgmp3c2', 'libharminv2', 'libhdf5-openmpi-1.8.4', 'libctl3', 'libgfortran3', 'libmeep-openmpi6', 'libgsl0ldbl', 'libfftw3-3', 'libopenmpi1.3', 'libnuma1', 'guile-1.8-libs', 'libtorque2', 'meep-openmpi'] 0m19.7s INFO: Running scripts post_remove 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/post_remove_exceptions_lenny'] 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/post_remove_exceptions_lenny'] 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/post_remove_extras'] 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/post_remove_extras'] 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'dpkg', '--purge', 'libltdl7', 'libatlas3gf-base', 'libibverbs1', 'openmpi-common', 'openmpi-bin', 'libgmp3c2', 'libharminv2', 'libhdf5-openmpi-1.8.4', 'libctl3', 'libgfortran3', 'libmeep-openmpi6', 'libgsl0ldbl', 'libfftw3-3', 'libopenmpi1.3', 'libnuma1', 'guile-1.8-libs', 'libtorque2'] 0m19.7s DUMP: (Reading database ... 6262 files and directories currently installed.) Removing libltdl7 ... Purging configuration files for libltdl7 ... Removing libatlas3gf-base ... Purging configuration files for libatlas3gf-base ... Removing libibverbs1 ... Purging configuration files for libibverbs1 ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed. Removing openmpi-bin ... Purging configuration files for openmpi-bin ... Removing libgmp3c2 ... Purging configuration files for libgmp3c2 ... Removing libharminv2 ... Purging configuration files for libharminv2 ... Removing libhdf5-openmpi-1.8.4 ... Purging configuration files for libhdf5-openmpi-1.8.4 ... Removing libctl3 ... Purging configuration files for libctl3 ... Removing libgfortran3 ... Purging configuration files for libgfortran3 ... Removing libmeep-openmpi6 ... Purging configuration files for libmeep-openmpi6 ... Removing libgsl0ldbl ... Purging configuration files for libgsl0ldbl ... Removing libfftw3-3 ... Purging configuration files for libfftw3-3 ... Removing libopenmpi1.3 ... Purging configuration files for libopenmpi1.3 ... Removing libnuma1 ... Purging configuration files for libnuma1 ... Removing guile-1.8-libs ... Purging configuration files for guile-1.8-libs ... Removing libtorque2 ... Purging configuration files for libtorque2 ... 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'dpkg', '--purge', 'libltdl7', 'libatlas3gf-base', 'libibverbs1', 'openmpi-common', 'openmpi-bin', 'libgmp3c2', 'libharminv2', 'libhdf5-openmpi-1.8.4', 'libctl3', 'libgfortran3', 'libmeep-openmpi6', 'libgsl0ldbl', 'libfftw3-3', 'libopenmpi1.3', 'libnuma1', 'guile-1.8-libs', 'libtorque2'] 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'dpkg', '--purge', 'meep-openmpi'] 0m19.8s DUMP: dpkg: warning: ignoring request to remove meep-openmpi which isn't installed. 0m19.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'dpkg', '--purge', 'meep-openmpi'] 0m19.8s INFO: Running scripts post_purge 0m19.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/post_purge_exceptions'] 0m19.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'tmp/scripts/post_purge_exceptions'] 0m19.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'dpkg', '--purge', '--pending'] 0m19.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'dpkg', '--purge', '--pending'] 0m19.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'dpkg', '--remove', '--pending'] 0m19.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'dpkg', '--remove', '--pending'] 0m19.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBsgoen'] 0m20.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpBsgoen'] 0m20.8s DEBUG: No broken symlinks as far as we can find. 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'dpkg-divert', '--list'] 0m20.9s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'dpkg-divert', '--list'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'apt-get', 'clean'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'apt-get', 'clean'] 0m21.9s INFO: PASS: Installation and purging test. 0m22.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'umount', '/proc'] 0m22.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpBsgoen', 'umount', '/proc'] 0m22.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpBsgoen'] 0m22.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpBsgoen'] 0m22.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpBsgoen 0m22.3s INFO: PASS: All tests. 0m22.3s INFO: piuparts run ends. ret=0 End: 2014-04-01 07:01:20 UTC