Start: 2014-02-06 16:32:36 UTC Package: mpqc-openmpi Priority: optional Section: science Installed-Size: 6632 Maintainer: Debichem Team Architecture: amd64 Source: mpqc Version: 2.3.1-6 Replaces: mpqc Depends: libblas3gf | libblas.so.3gf | libatlas3gf-base, libc6 (>= 2.2.5), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3), liblapack3gf | liblapack.so.3gf | libatlas3gf-base, libopenmpi1.3, libstdc++6 (>= 4.2.1), libsc-data (= 2.3.1-6) Suggests: mpqc-support Conflicts: mpqc Filename: pool/main/m/mpqc/mpqc-openmpi_2.3.1-6_amd64.deb Size: 2422186 MD5sum: a6d5c7a28ed3f9c9600ba05cc05e590f SHA1: 1fa40331c2f8d773f8d99381d0b9d19877eadb06 SHA256: d9ffe6383e6980b6751489f79b6775025cfbf63711aa4709c7939929a235e64d Description: The Massively Parallel Quantum Chemistry Program (OpenMPI Version) MPQC is an ab-inito quantum chemistry program. It is especially designed to compute molecules in a highly parallelized fashion. . It can compute energies and gradients for the following methods: * Closed shell and general restricted open shell Hartree-Fock (HF) * Density Functional Theory (DFT) * Closed shell Moeller-Plesset pertubation theory (MP2) . Additionally, it can compute energies for the following methods: * Second order open shell pertubation theory (OPT2[2]) * Z-averaged pertubation theory (ZAPT2) . It also includes an internal coordinate geometry optimizer. . MPQC is built upon the Scientific Computing Toolkit (SC). Homepage: http://www.mpqc.org Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 35m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt mpqc-openmpi=2.3.1-6 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at http://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.57~201402051027~0.56-30-g8a43058 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt mpqc-openmpi=2.3.1-6 0m0.0s INFO: Running on: Linux piu-slave-bm-a 3.2.0-4-amd64 #1 SMP Debian 3.2.51-1 x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpJR4fz6 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpJR4fz6 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.8s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ squeeze main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'apt-get', 'update'] 0m1.8s DUMP: Hit http://mirror.bm.debian.org squeeze Release.gpg Ign http://mirror.bm.debian.org/debian/ squeeze/main Translation-en Hit http://mirror.bm.debian.org squeeze Release Hit http://mirror.bm.debian.org squeeze/main amd64 Packages Reading package lists... 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'apt-get', 'update'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'apt-get', '-yf', 'dist-upgrade'] 0m2.3s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'apt-get', '-yf', 'dist-upgrade'] 0m2.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpJR4fz6/tmp/scripts/ 0m2.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts-squeeze to /srv/piuparts.debian.org/tmp/tmpJR4fz6/tmp/scripts/ 0m2.3s INFO: Running scripts post_setup 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/post_setup_experimental'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/post_setup_experimental'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/post_setup_forbid_home'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/post_setup_forbid_home'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m3.3s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 320 kB of archives. After this operation, 1532 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main adduser all 3.112+nmu2 [250 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main ucf all 3.0025+nmu1 [69.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 320 kB in 0s (7428 kB/s) Selecting previously deselected package adduser. (Reading database ... 6155 files and directories currently installed.) Unpacking adduser (from .../adduser_3.112+nmu2_all.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu1_all.deb) ... Moving old data out of the way Setting up adduser (3.112+nmu2) ... Setting up ucf (3.0025+nmu1) ... 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'apt-get', 'clean'] 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'apt-get', 'clean'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'dpkg', '--get-selections', '*'] 0m3.8s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libgcc1 install liblocale-gettext-perl install liblzma2 install libncurses5 install libpam-modules install libpam-runtime install libpam0g install libreadline6 install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mount install ncurses-base install ncurses-bin install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'dpkg', '--get-selections', '*'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'dpkg-divert', '--list'] 0m3.9s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash diversion of /bin/sh to /bin/sh.distrib by dash 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'dpkg-divert', '--list'] 0m3.9s INFO: apt-cache does not know about any of the requested packages 0m3.9s INFO: Running scripts pre_test 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/pre_test_root_password'] 0m3.9s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/pre_test_root_password'] 0m3.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpJR4fz6'] 0m4.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpJR4fz6'] 0m4.8s DEBUG: No broken symlinks as far as we can find. 0m4.8s INFO: Running scripts pre_install 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/pre_install_database-server'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/pre_install_database-server'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/pre_install_exceptions'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/pre_install_exceptions'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'apt-cache', 'show', 'mpqc-openmpi=2.3.1-6'] 0m4.9s DUMP: Package: mpqc-openmpi Priority: optional Section: science Installed-Size: 6632 Maintainer: Debichem Team Architecture: amd64 Source: mpqc Version: 2.3.1-6 Replaces: mpqc Depends: libblas3gf | libblas.so.3gf | libatlas3gf-base, libc6 (>= 2.2.5), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3), liblapack3gf | liblapack.so.3gf | libatlas3gf-base, libopenmpi1.3, libstdc++6 (>= 4.2.1), libsc-data (= 2.3.1-6) Suggests: mpqc-support Conflicts: mpqc Filename: pool/main/m/mpqc/mpqc-openmpi_2.3.1-6_amd64.deb Size: 2422186 MD5sum: a6d5c7a28ed3f9c9600ba05cc05e590f SHA1: 1fa40331c2f8d773f8d99381d0b9d19877eadb06 SHA256: d9ffe6383e6980b6751489f79b6775025cfbf63711aa4709c7939929a235e64d Description: The Massively Parallel Quantum Chemistry Program (OpenMPI Version) MPQC is an ab-inito quantum chemistry program. It is especially designed to compute molecules in a highly parallelized fashion. . It can compute energies and gradients for the following methods: * Closed shell and general restricted open shell Hartree-Fock (HF) * Density Functional Theory (DFT) * Closed shell Moeller-Plesset pertubation theory (MP2) . Additionally, it can compute energies for the following methods: * Second order open shell pertubation theory (OPT2[2]) * Z-averaged pertubation theory (ZAPT2) . It also includes an internal coordinate geometry optimizer. . MPQC is built upon the Scientific Computing Toolkit (SC). Homepage: http://www.mpqc.org 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'apt-cache', 'show', 'mpqc-openmpi=2.3.1-6'] 0m4.9s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed Depends: libblas3gf | libblas.so.3gf | libatlas3gf-base, libc6 (>= 2.2.5), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3), liblapack3gf | liblapack.so.3gf | libatlas3gf-base, libopenmpi1.3, libstdc++6 (>= 4.2.1), libsc-data (= 2.3.1-6) Conflicts: mpqc 0m4.9s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpFI_miv/piuparts-depends-dummy'] 0m4.9s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpFI_miv/piuparts-depends-dummy.deb'. 0m4.9s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpFI_miv/piuparts-depends-dummy'] 0m4.9s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpFI_miv/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpJR4fz6/tmp 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m5.0s DUMP: Selecting previously deselected package piuparts-depends-dummy. (Reading database ... 6278 files and directories currently installed.) Unpacking piuparts-depends-dummy (from tmp/piuparts-depends-dummy.deb) ... dpkg: dependency problems prevent configuration of piuparts-depends-dummy: piuparts-depends-dummy depends on libblas3gf | libblas.so.3gf | libatlas3gf-base; however: Package libblas3gf is not installed. Package libblas.so.3gf is not installed. Package libatlas3gf-base is not installed. piuparts-depends-dummy depends on libgfortran3 (>= 4.3); however: Package libgfortran3 is not installed. piuparts-depends-dummy depends on liblapack3gf | liblapack.so.3gf | libatlas3gf-base; however: Package liblapack3gf is not installed. Package liblapack.so.3gf is not installed. Package libatlas3gf-base is not installed. piuparts-depends-dummy depends on libopenmpi1.3; however: Package libopenmpi1.3 is not installed. piuparts-depends-dummy depends on libsc-data (= 2.3.1-6); however: Package libsc-data is not installed. dpkg: error processing piuparts-depends-dummy (--install): dependency problems - leaving unconfigured Errors were encountered while processing: piuparts-depends-dummy 0m5.0s DEBUG: Command failed (status=1), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'apt-get', '-yf', 'install'] 0m6.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Correcting dependencies... Done The following extra packages will be installed: libblas3gf libgfortran3 libibverbs1 liblapack3gf libnuma1 libopenmpi1.3 libsc-data libtorque2 The following NEW packages will be installed: libblas3gf libgfortran3 libibverbs1 liblapack3gf libnuma1 libopenmpi1.3 libsc-data libtorque2 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. 1 not fully installed or removed. Need to get 6832 kB of archives. After this operation, 17.6 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main libgfortran3 amd64 4.4.5-8 [291 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main libblas3gf amd64 1.2-8 [229 kB] Get:3 http://mirror.bm.debian.org/debian/ squeeze/main liblapack3gf amd64 3.2.1-8 [4434 kB] Get:4 http://mirror.bm.debian.org/debian/ squeeze/main libibverbs1 amd64 1.1.3-2 [33.7 kB] Get:5 http://mirror.bm.debian.org/debian/ squeeze/main libnuma1 amd64 2.0.5-1 [26.7 kB] Get:6 http://mirror.bm.debian.org/debian/ squeeze/main libtorque2 amd64 2.4.8+dfsg-9squeeze2 [115 kB] Get:7 http://mirror.bm.debian.org/debian/ squeeze/main libopenmpi1.3 amd64 1.4.2-4 [1400 kB] Get:8 http://mirror.bm.debian.org/debian/ squeeze/main libsc-data all 2.3.1-6 [303 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6832 kB in 0s (32.5 MB/s) Selecting previously deselected package libgfortran3. (Reading database ... 6278 files and directories currently installed.) Unpacking libgfortran3 (from .../libgfortran3_4.4.5-8_amd64.deb) ... Selecting previously deselected package libblas3gf. Unpacking libblas3gf (from .../libblas3gf_1.2-8_amd64.deb) ... Selecting previously deselected package liblapack3gf. Unpacking liblapack3gf (from .../liblapack3gf_3.2.1-8_amd64.deb) ... Selecting previously deselected package libibverbs1. Unpacking libibverbs1 (from .../libibverbs1_1.1.3-2_amd64.deb) ... Selecting previously deselected package libnuma1. Unpacking libnuma1 (from .../libnuma1_2.0.5-1_amd64.deb) ... Selecting previously deselected package libtorque2. Unpacking libtorque2 (from .../libtorque2_2.4.8+dfsg-9squeeze2_amd64.deb) ... Selecting previously deselected package libopenmpi1.3. Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.2-4_amd64.deb) ... Selecting previously deselected package libsc-data. Unpacking libsc-data (from .../libsc-data_2.3.1-6_all.deb) ... Setting up libgfortran3 (4.4.5-8) ... Setting up libblas3gf (1.2-8) ... update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode. Setting up liblapack3gf (3.2.1-8) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode. Setting up libibverbs1 (1.1.3-2) ... Setting up libnuma1 (2.0.5-1) ... Setting up libtorque2 (2.4.8+dfsg-9squeeze2) ... Setting up libopenmpi1.3 (1.4.2-4) ... Setting up libsc-data (2.3.1-6) ... Setting up piuparts-depends-dummy (0.invalid.0) ... 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'apt-get', '-yf', 'install'] 0m6.5s INFO: Installation of ['tmp/piuparts-depends-dummy.deb'] ok 0m6.5s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpJR4fz6/tmp/piuparts-depends-dummy.deb 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m6.5s DUMP: (Reading database ... 6488 files and directories currently installed.) Removing piuparts-depends-dummy ... 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'apt-get', 'clean'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'apt-get', 'clean'] 0m7.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpJR4fz6'] 0m7.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpJR4fz6'] 0m8.0s DEBUG: No broken symlinks as far as we can find. 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'apt-cache', 'policy'] 0m8.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages release v=6.0.8,o=Debian,a=oldstable,n=squeeze,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'apt-cache', 'policy'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'apt-cache', 'policy', 'mpqc-openmpi'] 0m8.1s DUMP: mpqc-openmpi: Installed: (none) Candidate: 2.3.1-6 Version table: 2.3.1-6 0 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'apt-cache', 'policy', 'mpqc-openmpi'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'apt-get', '-y', 'install', 'mpqc-openmpi=2.3.1-6'] 0m8.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Suggested packages: mpqc-support The following NEW packages will be installed: mpqc-openmpi 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 2422 kB of archives. After this operation, 6791 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main mpqc-openmpi amd64 2.3.1-6 [2422 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2422 kB in 0s (27.6 MB/s) Selecting previously deselected package mpqc-openmpi. (Reading database ... 6488 files and directories currently installed.) Unpacking mpqc-openmpi (from .../mpqc-openmpi_2.3.1-6_amd64.deb) ... Setting up mpqc-openmpi (2.3.1-6) ... 0m8.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'apt-get', '-y', 'install', 'mpqc-openmpi=2.3.1-6'] 0m8.8s INFO: Running scripts post_install 0m8.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpJR4fz6'] 0m9.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpJR4fz6'] 0m9.8s DEBUG: No broken symlinks as far as we can find. 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'dpkg', '--get-selections', '*'] 0m9.8s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libblas3gf install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libgcc1 install libgfortran3 install libibverbs1 install liblapack3gf install liblocale-gettext-perl install liblzma2 install libncurses5 install libnuma1 install libopenmpi1.3 install libpam-modules install libpam-runtime install libpam0g install libreadline6 install libsc-data install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libtorque2 install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mount install mpqc-openmpi install ncurses-base install ncurses-bin install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'dpkg', '--get-selections', '*'] 0m10.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', '-ac'] 0m11.0s DUMP: debsums: no md5sums for mawk 0m11.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', '-ac'] 0m11.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m11.0s DUMP: 0.11.3~bpo70+1 0m11.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m11.0s INFO: Running adequate version 0.11.3~bpo70+1 now. 0m11.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'mpqc-openmpi'] 0m11.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'mpqc-openmpi'] 0m11.2s INFO: Running scripts pre_remove 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/pre_remove_exceptions'] 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/pre_remove_exceptions'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'apt-get', 'remove', 'liblapack3gf', 'libblas3gf', 'libibverbs1', 'libsc-data', 'libopenmpi1.3', 'libgfortran3', 'libnuma1', 'libtorque2', 'mpqc-openmpi'] 0m12.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libblas3gf libgfortran3 libibverbs1 liblapack3gf libnuma1 libopenmpi1.3 libsc-data libtorque2 mpqc-openmpi 0 upgraded, 0 newly installed, 9 to remove and 0 not upgraded. After this operation, 24.4 MB disk space will be freed. (Reading database ... 6509 files and directories currently installed.) Removing mpqc-openmpi ... Removing liblapack3gf ... Removing libblas3gf ... Removing libopenmpi1.3 ... Removing libgfortran3 ... Removing libibverbs1 ... Removing libnuma1 ... Removing libsc-data ... Removing libtorque2 ... 0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'apt-get', 'remove', 'liblapack3gf', 'libblas3gf', 'libibverbs1', 'libsc-data', 'libopenmpi1.3', 'libgfortran3', 'libnuma1', 'libtorque2', 'mpqc-openmpi'] 0m12.0s INFO: Running scripts post_remove 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/post_remove_exceptions_lenny'] 0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/post_remove_exceptions_lenny'] 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'dpkg', '--purge', 'liblapack3gf', 'libblas3gf', 'libibverbs1', 'libsc-data', 'libopenmpi1.3', 'libgfortran3', 'libnuma1', 'libtorque2'] 0m12.2s DUMP: (Reading database ... 6278 files and directories currently installed.) Removing liblapack3gf ... Purging configuration files for liblapack3gf ... Removing libblas3gf ... Purging configuration files for libblas3gf ... Removing libibverbs1 ... Purging configuration files for libibverbs1 ... dpkg: warning: ignoring request to remove libsc-data which isn't installed. Removing libopenmpi1.3 ... Purging configuration files for libopenmpi1.3 ... Removing libgfortran3 ... Purging configuration files for libgfortran3 ... Removing libnuma1 ... Purging configuration files for libnuma1 ... Removing libtorque2 ... Purging configuration files for libtorque2 ... 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'dpkg', '--purge', 'liblapack3gf', 'libblas3gf', 'libibverbs1', 'libsc-data', 'libopenmpi1.3', 'libgfortran3', 'libnuma1', 'libtorque2'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'dpkg', '--purge', 'mpqc-openmpi'] 0m12.2s DUMP: dpkg: warning: ignoring request to remove mpqc-openmpi which isn't installed. 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'dpkg', '--purge', 'mpqc-openmpi'] 0m12.2s INFO: Running scripts post_purge 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/post_purge_exceptions'] 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'tmp/scripts/post_purge_exceptions'] 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'dpkg', '--purge', '--pending'] 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'dpkg', '--purge', '--pending'] 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'dpkg', '--remove', '--pending'] 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'dpkg', '--remove', '--pending'] 0m12.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpJR4fz6'] 0m12.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpJR4fz6'] 0m13.3s ERROR: WARN: Broken symlinks: /etc/alternatives/liblapack.so.3gf -> /usr/lib/lapack/liblapack.so.3gf 0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'dpkg-divert', '--list'] 0m13.3s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash diversion of /bin/sh to /bin/sh.distrib by dash 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'dpkg-divert', '--list'] 0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'apt-get', 'clean'] 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'apt-get', 'clean'] 0m14.3s INFO: Warning: Package purging left files on system: /etc/alternatives/liblapack.so.3gf -> /usr/lib/lapack/liblapack.so.3gf not owned These files seem to have been left by dependencies rather than by packages being explicitly tested. 0m14.3s INFO: PASS: Installation and purging test. 0m14.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'umount', '/proc'] 0m14.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJR4fz6', 'umount', '/proc'] 0m14.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpJR4fz6'] 0m14.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpJR4fz6'] 0m14.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpJR4fz6 0m14.6s INFO: PASS: All tests. 0m14.6s INFO: piuparts run ends. ret=0 End: 2014-02-06 16:32:51 UTC