Start: 2014-09-24 07:03:17 UTC Package: ncbi-rrna-data Priority: optional Section: science Installed-Size: 131624 Maintainer: Debian Med Packaging Team Architecture: all Source: ncbi-tools6 Version: 6.1.20090809-2 Replaces: ncbi-data (= 6.1.20081116a-1) Depends: ncbi-data Recommends: blast2 Filename: pool/main/n/ncbi-tools6/ncbi-rrna-data_6.1.20090809-2_all.deb Size: 46242784 MD5sum: 1dc134cd194f25a7f2de5ef06f731249 SHA1: 93ed276116ff0ab9b6f7dd1ecad585c89ec7b915 SHA256: 3c10fdaf04b81985af1c8ec6f78ec68d0cc88ea4576f2cf277f837a44938273b Description: large rRNA BLAST databases distributed with the NCBI toolkit This package contains some ribosomal RNA BLAST databases distributed as part of the NCBI C Toolkit that are too large and specialized to include in ncbi-data. Specifically, it contains the databases Combined16SrRNA_2-12-2008, LSURef_93.fasta, and SSURef_93.fasta, along with an alias file to facilitate searching all three of them in conjunction with the 16SCore database included in ncbi-data. Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Tag: biology::format:fasta, biology::nuceleic-acids, field::biology, field::biology:bioinformatics, qa::low-popcon, role::data Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 35m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt ncbi-rrna-data=6.1.20090809-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.59 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt ncbi-rrna-data=6.1.20090809-2 0m0.0s INFO: Running on: Linux piu-slave-bm-a 3.2.0-4-amd64 #1 SMP Debian 3.2.60-1+deb7u3 x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpwY9tc0 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpwY9tc0 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.8s DUMP: tar: ./proc: time stamp 2014-10-15 13:49:47 is 1838789.205230628 s in the future 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.8s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ squeeze main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'apt-get', 'update'] 0m1.8s DUMP: Hit http://mirror.bm.debian.org squeeze Release.gpg Ign http://mirror.bm.debian.org/debian/ squeeze/main Translation-en Hit http://mirror.bm.debian.org squeeze Release Hit http://mirror.bm.debian.org squeeze/main amd64 Packages Reading package lists... 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'apt-get', 'update'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpwY9tc0/tmp/scripts/ 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts-squeeze to /srv/piuparts.debian.org/tmp/tmpwY9tc0/tmp/scripts/ 0m2.2s INFO: Running scripts post_setup 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/post_setup_experimental'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/post_setup_experimental'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/post_setup_forbid_home'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/post_setup_forbid_home'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m3.2s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 320 kB of archives. After this operation, 1532 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main adduser all 3.112+nmu2 [250 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main ucf all 3.0025+nmu1 [69.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 320 kB in 0s (13.3 MB/s) Selecting previously deselected package adduser. (Reading database ... 6138 files and directories currently installed.) Unpacking adduser (from .../adduser_3.112+nmu2_all.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu1_all.deb) ... Moving old data out of the way Setting up adduser (3.112+nmu2) ... Setting up ucf (3.0025+nmu1) ... 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'apt-get', 'clean'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'apt-get', 'clean'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'dpkg', '--get-selections', '*'] 0m3.7s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libgcc1 install liblocale-gettext-perl install liblzma2 install libncurses5 install libpam-modules install libpam-runtime install libpam0g install libreadline6 install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mount install ncurses-base install ncurses-bin install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'dpkg', '--get-selections', '*'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'dpkg-divert', '--list'] 0m3.7s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'dpkg-divert', '--list'] 0m3.7s INFO: apt-cache does not know about any of the requested packages 0m3.7s INFO: Running scripts pre_test 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/pre_test_root_password'] 0m3.8s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/pre_test_root_password'] 0m3.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwY9tc0'] 0m4.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwY9tc0'] 0m4.8s DEBUG: No broken symlinks as far as we can find. 0m4.8s INFO: Running scripts pre_install 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/pre_install_database-server'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/pre_install_database-server'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/pre_install_exceptions'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/pre_install_exceptions'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/pre_install_extras'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/pre_install_extras'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'apt-cache', 'show', 'ncbi-rrna-data=6.1.20090809-2'] 0m4.9s DUMP: Package: ncbi-rrna-data Priority: optional Section: science Installed-Size: 131624 Maintainer: Debian Med Packaging Team Architecture: all Source: ncbi-tools6 Version: 6.1.20090809-2 Replaces: ncbi-data (= 6.1.20081116a-1) Depends: ncbi-data Recommends: blast2 Filename: pool/main/n/ncbi-tools6/ncbi-rrna-data_6.1.20090809-2_all.deb Size: 46242784 MD5sum: 1dc134cd194f25a7f2de5ef06f731249 SHA1: 93ed276116ff0ab9b6f7dd1ecad585c89ec7b915 SHA256: 3c10fdaf04b81985af1c8ec6f78ec68d0cc88ea4576f2cf277f837a44938273b Description: large rRNA BLAST databases distributed with the NCBI toolkit This package contains some ribosomal RNA BLAST databases distributed as part of the NCBI C Toolkit that are too large and specialized to include in ncbi-data. Specifically, it contains the databases Combined16SrRNA_2-12-2008, LSURef_93.fasta, and SSURef_93.fasta, along with an alias file to facilitate searching all three of them in conjunction with the 16SCore database included in ncbi-data. Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ Tag: biology::format:fasta, biology::nuceleic-acids, field::biology, field::biology:bioinformatics, qa::low-popcon, role::data 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'apt-cache', 'show', 'ncbi-rrna-data=6.1.20090809-2'] 0m4.9s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed Depends: ncbi-data 0m4.9s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpYknS4h/piuparts-depends-dummy'] 0m4.9s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpYknS4h/piuparts-depends-dummy.deb'. 0m4.9s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpYknS4h/piuparts-depends-dummy'] 0m4.9s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpYknS4h/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpwY9tc0/tmp 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m4.9s DUMP: Selecting previously deselected package piuparts-depends-dummy. (Reading database ... 6261 files and directories currently installed.) Unpacking piuparts-depends-dummy (from tmp/piuparts-depends-dummy.deb) ... dpkg: dependency problems prevent configuration of piuparts-depends-dummy: piuparts-depends-dummy depends on ncbi-data; however: Package ncbi-data is not installed. dpkg: error processing piuparts-depends-dummy (--install): dependency problems - leaving unconfigured Errors were encountered while processing: piuparts-depends-dummy 0m4.9s DEBUG: Command failed (status=1), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'apt-get', '-yf', 'install'] 0m5.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Correcting dependencies... Done The following extra packages will be installed: ncbi-data The following NEW packages will be installed: ncbi-data 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 1 not fully installed or removed. Need to get 2808 kB of archives. After this operation, 10.6 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main ncbi-data all 6.1.20090809-2 [2808 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2808 kB in 0s (12.3 MB/s) Selecting previously deselected package ncbi-data. (Reading database ... 6261 files and directories currently installed.) Unpacking ncbi-data (from .../ncbi-data_6.1.20090809-2_all.deb) ... Setting up ncbi-data (6.1.20090809-2) ... Setting up piuparts-depends-dummy (0.invalid.0) ... 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'apt-get', '-yf', 'install'] 0m5.8s INFO: Installation of ['tmp/piuparts-depends-dummy.deb'] ok 0m5.8s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpwY9tc0/tmp/piuparts-depends-dummy.deb 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m5.8s DUMP: piuparts-depends-dummy install ok installed 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m5.9s DUMP: (Reading database ... 6357 files and directories currently installed.) Removing piuparts-depends-dummy ... 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'apt-get', 'clean'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'apt-get', 'clean'] 0m6.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwY9tc0'] 0m6.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwY9tc0'] 0m7.4s DEBUG: No broken symlinks as far as we can find. 0m7.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'apt-cache', 'policy'] 0m7.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages release v=6.0.10,o=Debian,a=oldstable,n=squeeze,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'apt-cache', 'policy'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'apt-cache', 'policy', 'ncbi-rrna-data'] 0m7.5s DUMP: ncbi-rrna-data: Installed: (none) Candidate: 6.1.20090809-2 Version table: 6.1.20090809-2 0 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages 0m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'apt-cache', 'policy', 'ncbi-rrna-data'] 0m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'apt-get', '-y', 'install', 'ncbi-rrna-data=6.1.20090809-2'] 0m10.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Recommended packages: blast2 The following NEW packages will be installed: ncbi-rrna-data 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 46.2 MB of archives. After this operation, 135 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main ncbi-rrna-data all 6.1.20090809-2 [46.2 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 46.2 MB in 1s (35.7 MB/s) Selecting previously deselected package ncbi-rrna-data. (Reading database ... 6357 files and directories currently installed.) Unpacking ncbi-rrna-data (from .../ncbi-rrna-data_6.1.20090809-2_all.deb) ... Setting up ncbi-rrna-data (6.1.20090809-2) ... 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'apt-get', '-y', 'install', 'ncbi-rrna-data=6.1.20090809-2'] 0m10.5s INFO: Running scripts post_install 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/post_install_exceptions'] 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/post_install_exceptions'] 0m10.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwY9tc0'] 0m10.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwY9tc0'] 0m11.5s DEBUG: No broken symlinks as far as we can find. 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'dpkg', '--get-selections', '*'] 0m11.6s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libgcc1 install liblocale-gettext-perl install liblzma2 install libncurses5 install libpam-modules install libpam-runtime install libpam0g install libreadline6 install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mount install ncbi-data install ncbi-rrna-data install ncurses-base install ncurses-bin install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'dpkg', '--get-selections', '*'] 0m12.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', '-ac'] 0m13.2s DUMP: debsums: no md5sums for mawk 0m13.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', '-ac'] 0m13.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m13.2s DUMP: 0.12~bpo70+1 0m13.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m13.2s INFO: Running adequate version 0.12~bpo70+1 now. 0m13.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'ncbi-rrna-data'] 0m13.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'ncbi-rrna-data'] 0m13.3s INFO: Running scripts pre_remove 0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m13.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m13.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m13.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m13.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/pre_remove_exceptions'] 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/pre_remove_exceptions'] 0m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'apt-get', 'remove', 'ncbi-data', 'ncbi-rrna-data'] 0m14.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ncbi-data ncbi-rrna-data 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. After this operation, 145 MB disk space will be freed. (Reading database ... 6372 files and directories currently installed.) Removing ncbi-rrna-data ... Removing ncbi-data ... 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'apt-get', 'remove', 'ncbi-data', 'ncbi-rrna-data'] 0m14.0s INFO: Running scripts post_remove 0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/post_remove_exceptions_lenny'] 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/post_remove_exceptions_lenny'] 0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/post_remove_extras'] 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/post_remove_extras'] 0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'dpkg', '--purge', 'ncbi-data'] 0m14.0s DUMP: (Reading database ... 6264 files and directories currently installed.) Removing ncbi-data ... Purging configuration files for ncbi-data ... 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'dpkg', '--purge', 'ncbi-data'] 0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'dpkg', '--purge', 'ncbi-rrna-data'] 0m14.1s DUMP: dpkg: warning: ignoring request to remove ncbi-rrna-data which isn't installed. 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'dpkg', '--purge', 'ncbi-rrna-data'] 0m14.1s INFO: Running scripts post_purge 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/post_purge_exceptions'] 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'tmp/scripts/post_purge_exceptions'] 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'dpkg', '--purge', '--pending'] 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'dpkg', '--purge', '--pending'] 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'dpkg', '--remove', '--pending'] 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'dpkg', '--remove', '--pending'] 0m14.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwY9tc0'] 0m14.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpwY9tc0'] 0m15.1s DEBUG: No broken symlinks as far as we can find. 0m15.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'dpkg-divert', '--list'] 0m15.1s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m15.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'dpkg-divert', '--list'] 0m15.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'apt-get', 'clean'] 0m15.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'apt-get', 'clean'] 0m16.1s INFO: PASS: Installation and purging test. 0m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'umount', '/proc'] 0m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpwY9tc0', 'umount', '/proc'] 0m16.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpwY9tc0'] 0m16.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpwY9tc0'] 0m16.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpwY9tc0 0m16.5s INFO: PASS: All tests. 0m16.5s INFO: piuparts run ends. ret=0 End: 2014-09-24 07:03:34 UTC