Start: 2014-10-03 08:45:11 UTC Package: psi3 Priority: optional Section: science Installed-Size: 25392 Maintainer: Debichem Team Architecture: amd64 Source: psicode Version: 3.4.0-2 Depends: libblas3gf | libblas.so.3gf | libatlas3gf-base, libc6 (>= 2.3.2), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3), liblapack3gf | liblapack.so.3gf | libatlas3gf-base, libstdc++6 (>= 4.2.1) Filename: pool/main/p/psicode/psi3_3.4.0-2_amd64.deb Size: 7982034 MD5sum: 884fe27e6b47f6ff9ad3eec4bb0f8180 SHA1: e424d14b82220cf719a341a13f92525c0f7550d6 SHA256: 265c9ad4d9788f7d1582849cf9b0a16dd36db9f3fcdab9ba392d7b56120daa6b Description: Quantum Chemical Program Suite PSI3 is an ab-initio quantum chemistry program. It is especially designed to accurately compute properties of small to medium molecules using highly correlated techniques. . It can compute energies and gradients for the following methods: * Closed shell and general restricted open shell Hartree-Fock (RHF/ROHF) * Complete active space SCF (CASSCF) * Coupled-cluster singles doubles (CCSD) * Coupled-cluster singles doubles with pertubative triples (CCSD(T)) (only for unrestricted (UHF) reference wavefunctions) . Additionally, it can compute energies for the following methods: * Unrestricted open shell Hartree-Fock (UHF) * Closed/open shell Moeller-Plesset pertubation theory (MP2) * Closed shell linear R12 Moeller-Plesset pertubation theory (MP2-R12) * Multireference configuration-interaction (MRCI) * Coupled-cluster singles doubles with pertubative triples (CCSD(T)) * Second-order approximate coupled-cluster singles doubles (CC2) * Closed shell and general restricted open shell equation-of-motion coupled- cluster singles doubles (EOM-CCSD) . Further features include: * Flexible, modular and customizable input format * Excited state calculations with the CC2, EOM-CCSD, CASSCF and MRCI methods * Internal coordinate geometry optimizer * Harmonic frequencies calculations * One-electron properties like dipole/quadrupole moments, natural orbitals, electrostatic potential, hyperfine coupling constants or spin density * Utilization of molecular point-group symmetry to increase efficiency Homepage: http://www.psicode.org/ Tag: field::chemistry, field::physics, implemented-in::fortran, role::program Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 35m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt psi3=3.4.0-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.59 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt psi3=3.4.0-2 0m0.0s INFO: Running on: Linux piu-slave-bm-a 3.2.0-4-amd64 #1 SMP Debian 3.2.60-1+deb7u3 x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpih0i0x 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpih0i0x 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpih0i0x', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.8s DUMP: tar: ./proc: time stamp 2014-10-15 13:49:47 is 1055075.082251015 s in the future 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpih0i0x', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.8s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ squeeze main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'apt-get', 'update'] 0m1.8s DUMP: Hit http://mirror.bm.debian.org squeeze Release.gpg Ign http://mirror.bm.debian.org/debian/ squeeze/main Translation-en Hit http://mirror.bm.debian.org squeeze Release Hit http://mirror.bm.debian.org squeeze/main amd64 Packages Reading package lists... 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'apt-get', 'update'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpih0i0x/tmp/scripts/ 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts-squeeze to /srv/piuparts.debian.org/tmp/tmpih0i0x/tmp/scripts/ 0m2.2s INFO: Running scripts post_setup 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/post_setup_experimental'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/post_setup_experimental'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/post_setup_forbid_home'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/post_setup_forbid_home'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m3.2s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 320 kB of archives. After this operation, 1532 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main adduser all 3.112+nmu2 [250 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main ucf all 3.0025+nmu1 [69.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 320 kB in 0s (27.3 MB/s) Selecting previously deselected package adduser. (Reading database ... 6138 files and directories currently installed.) Unpacking adduser (from .../adduser_3.112+nmu2_all.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu1_all.deb) ... Moving old data out of the way Setting up adduser (3.112+nmu2) ... Setting up ucf (3.0025+nmu1) ... 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'apt-get', 'clean'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'apt-get', 'clean'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'dpkg', '--get-selections', '*'] 0m3.7s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libgcc1 install liblocale-gettext-perl install liblzma2 install libncurses5 install libpam-modules install libpam-runtime install libpam0g install libreadline6 install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mount install ncurses-base install ncurses-bin install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'dpkg', '--get-selections', '*'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'dpkg-divert', '--list'] 0m3.8s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'dpkg-divert', '--list'] 0m3.8s INFO: apt-cache does not know about any of the requested packages 0m3.8s INFO: Running scripts pre_test 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/pre_test_root_password'] 0m3.8s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/pre_test_root_password'] 0m3.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpih0i0x'] 0m4.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpih0i0x'] 0m4.8s DEBUG: No broken symlinks as far as we can find. 0m4.8s INFO: Running scripts pre_install 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/pre_install_database-server'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/pre_install_database-server'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/pre_install_exceptions'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/pre_install_exceptions'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/pre_install_extras'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/pre_install_extras'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'apt-cache', 'show', 'psi3=3.4.0-2'] 0m4.9s DUMP: Package: psi3 Priority: optional Section: science Installed-Size: 25392 Maintainer: Debichem Team Architecture: amd64 Source: psicode Version: 3.4.0-2 Depends: libblas3gf | libblas.so.3gf | libatlas3gf-base, libc6 (>= 2.3.2), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3), liblapack3gf | liblapack.so.3gf | libatlas3gf-base, libstdc++6 (>= 4.2.1) Filename: pool/main/p/psicode/psi3_3.4.0-2_amd64.deb Size: 7982034 MD5sum: 884fe27e6b47f6ff9ad3eec4bb0f8180 SHA1: e424d14b82220cf719a341a13f92525c0f7550d6 SHA256: 265c9ad4d9788f7d1582849cf9b0a16dd36db9f3fcdab9ba392d7b56120daa6b Description: Quantum Chemical Program Suite PSI3 is an ab-initio quantum chemistry program. It is especially designed to accurately compute properties of small to medium molecules using highly correlated techniques. . It can compute energies and gradients for the following methods: * Closed shell and general restricted open shell Hartree-Fock (RHF/ROHF) * Complete active space SCF (CASSCF) * Coupled-cluster singles doubles (CCSD) * Coupled-cluster singles doubles with pertubative triples (CCSD(T)) (only for unrestricted (UHF) reference wavefunctions) . Additionally, it can compute energies for the following methods: * Unrestricted open shell Hartree-Fock (UHF) * Closed/open shell Moeller-Plesset pertubation theory (MP2) * Closed shell linear R12 Moeller-Plesset pertubation theory (MP2-R12) * Multireference configuration-interaction (MRCI) * Coupled-cluster singles doubles with pertubative triples (CCSD(T)) * Second-order approximate coupled-cluster singles doubles (CC2) * Closed shell and general restricted open shell equation-of-motion coupled- cluster singles doubles (EOM-CCSD) . Further features include: * Flexible, modular and customizable input format * Excited state calculations with the CC2, EOM-CCSD, CASSCF and MRCI methods * Internal coordinate geometry optimizer * Harmonic frequencies calculations * One-electron properties like dipole/quadrupole moments, natural orbitals, electrostatic potential, hyperfine coupling constants or spin density * Utilization of molecular point-group symmetry to increase efficiency Homepage: http://www.psicode.org/ Tag: field::chemistry, field::physics, implemented-in::fortran, role::program 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'apt-cache', 'show', 'psi3=3.4.0-2'] 0m4.9s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed Depends: libblas3gf | libblas.so.3gf | libatlas3gf-base, libc6 (>= 2.3.2), libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.3), liblapack3gf | liblapack.so.3gf | libatlas3gf-base, libstdc++6 (>= 4.2.1) 0m4.9s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp29lLtW/piuparts-depends-dummy'] 0m5.0s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmp29lLtW/piuparts-depends-dummy.deb'. 0m5.0s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmp29lLtW/piuparts-depends-dummy'] 0m5.0s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmp29lLtW/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpih0i0x/tmp 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m5.0s DUMP: Selecting previously deselected package piuparts-depends-dummy. (Reading database ... 6261 files and directories currently installed.) Unpacking piuparts-depends-dummy (from tmp/piuparts-depends-dummy.deb) ... dpkg: dependency problems prevent configuration of piuparts-depends-dummy: piuparts-depends-dummy depends on libblas3gf | libblas.so.3gf | libatlas3gf-base; however: Package libblas3gf is not installed. Package libblas.so.3gf is not installed. Package libatlas3gf-base is not installed. piuparts-depends-dummy depends on libgfortran3 (>= 4.3); however: Package libgfortran3 is not installed. piuparts-depends-dummy depends on liblapack3gf | liblapack.so.3gf | libatlas3gf-base; however: Package liblapack3gf is not installed. Package liblapack.so.3gf is not installed. Package libatlas3gf-base is not installed. dpkg: error processing piuparts-depends-dummy (--install): dependency problems - leaving unconfigured Errors were encountered while processing: piuparts-depends-dummy 0m5.0s DEBUG: Command failed (status=1), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'apt-get', '-yf', 'install'] 0m6.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Correcting dependencies... Done The following extra packages will be installed: libblas3gf libgfortran3 liblapack3gf The following NEW packages will be installed: libblas3gf libgfortran3 liblapack3gf 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 1 not fully installed or removed. Need to get 4954 kB of archives. After this operation, 11.0 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main libgfortran3 amd64 4.4.5-8 [291 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main libblas3gf amd64 1.2-8 [229 kB] Get:3 http://mirror.bm.debian.org/debian/ squeeze/main liblapack3gf amd64 3.2.1-8 [4434 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 4954 kB in 0s (23.3 MB/s) Selecting previously deselected package libgfortran3. (Reading database ... 6261 files and directories currently installed.) Unpacking libgfortran3 (from .../libgfortran3_4.4.5-8_amd64.deb) ... Selecting previously deselected package libblas3gf. Unpacking libblas3gf (from .../libblas3gf_1.2-8_amd64.deb) ... Selecting previously deselected package liblapack3gf. Unpacking liblapack3gf (from .../liblapack3gf_3.2.1-8_amd64.deb) ... Setting up libgfortran3 (4.4.5-8) ... Setting up libblas3gf (1.2-8) ... update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode. Setting up liblapack3gf (3.2.1-8) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode. Setting up piuparts-depends-dummy (0.invalid.0) ... 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'apt-get', '-yf', 'install'] 0m6.2s INFO: Installation of ['tmp/piuparts-depends-dummy.deb'] ok 0m6.2s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpih0i0x/tmp/piuparts-depends-dummy.deb 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m6.2s DUMP: piuparts-depends-dummy install ok installed 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m6.2s DUMP: (Reading database ... 6282 files and directories currently installed.) Removing piuparts-depends-dummy ... 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m6.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'apt-get', 'clean'] 0m6.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'apt-get', 'clean'] 0m6.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpih0i0x'] 0m7.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpih0i0x'] 0m7.8s DEBUG: No broken symlinks as far as we can find. 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'apt-cache', 'policy'] 0m7.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages release v=6.0.10,o=Debian,a=oldstable,n=squeeze,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'apt-cache', 'policy'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'apt-cache', 'policy', 'psi3'] 0m7.9s DUMP: psi3: Installed: (none) Candidate: 3.4.0-2 Version table: 3.4.0-2 0 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'apt-cache', 'policy', 'psi3'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'apt-get', '-y', 'install', 'psi3=3.4.0-2'] 0m9.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: psi3 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 7982 kB of archives. After this operation, 26.0 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main psi3 amd64 3.4.0-2 [7982 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7982 kB in 0s (29.2 MB/s) Selecting previously deselected package psi3. (Reading database ... 6282 files and directories currently installed.) Unpacking psi3 (from .../psi3_3.4.0-2_amd64.deb) ... Setting up psi3 (3.4.0-2) ... 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'apt-get', '-y', 'install', 'psi3=3.4.0-2'] 0m9.0s INFO: Running scripts post_install 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/post_install_exceptions'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/post_install_exceptions'] 0m9.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpih0i0x'] 0m9.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpih0i0x'] 0m10.1s DEBUG: No broken symlinks as far as we can find. 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'dpkg', '--get-selections', '*'] 0m10.1s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libblas3gf install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libgcc1 install libgfortran3 install liblapack3gf install liblocale-gettext-perl install liblzma2 install libncurses5 install libpam-modules install libpam-runtime install libpam0g install libreadline6 install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mount install ncurses-base install ncurses-bin install passwd install perl-base install psi3 install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'dpkg', '--get-selections', '*'] 0m10.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpih0i0x', '-ac'] 0m11.4s DUMP: debsums: no md5sums for mawk 0m11.4s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpih0i0x', '-ac'] 0m11.4s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m11.4s DUMP: 0.12~bpo70+1 0m11.4s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m11.4s INFO: Running adequate version 0.12~bpo70+1 now. 0m11.4s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'psi3'] 0m11.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'psi3'] 0m11.5s INFO: Running scripts pre_remove 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/pre_remove_exceptions'] 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/pre_remove_exceptions'] 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'apt-get', 'remove', 'liblapack3gf', 'libgfortran3', 'libblas3gf', 'psi3'] 0m12.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libblas3gf libgfortran3 liblapack3gf psi3 0 upgraded, 0 newly installed, 4 to remove and 0 not upgraded. After this operation, 37.0 MB disk space will be freed. (Reading database ... 6343 files and directories currently installed.) Removing psi3 ... Removing liblapack3gf ... Removing libblas3gf ... Removing libgfortran3 ... 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'apt-get', 'remove', 'liblapack3gf', 'libgfortran3', 'libblas3gf', 'psi3'] 0m12.4s INFO: Running scripts post_remove 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/post_remove_exceptions_lenny'] 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/post_remove_exceptions_lenny'] 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/post_remove_extras'] 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/post_remove_extras'] 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'dpkg', '--purge', 'liblapack3gf', 'libgfortran3', 'libblas3gf'] 0m12.6s DUMP: (Reading database ... 6261 files and directories currently installed.) Removing liblapack3gf ... Purging configuration files for liblapack3gf ... Removing libgfortran3 ... Purging configuration files for libgfortran3 ... Removing libblas3gf ... Purging configuration files for libblas3gf ... 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'dpkg', '--purge', 'liblapack3gf', 'libgfortran3', 'libblas3gf'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'dpkg', '--purge', 'psi3'] 0m12.6s DUMP: dpkg: warning: ignoring request to remove psi3 which isn't installed. 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'dpkg', '--purge', 'psi3'] 0m12.6s INFO: Running scripts post_purge 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/post_purge_exceptions'] 0m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'tmp/scripts/post_purge_exceptions'] 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'dpkg', '--purge', '--pending'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'dpkg', '--purge', '--pending'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'dpkg', '--remove', '--pending'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'dpkg', '--remove', '--pending'] 0m12.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpih0i0x'] 0m13.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpih0i0x'] 0m14.0s ERROR: WARN: Broken symlinks: /etc/alternatives/liblapack.so.3gf -> /usr/lib/lapack/liblapack.so.3gf 0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'dpkg-divert', '--list'] 0m14.0s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'dpkg-divert', '--list'] 0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'apt-get', 'clean'] 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'apt-get', 'clean'] 0m15.1s INFO: Warning: Package purging left files on system: /etc/alternatives/liblapack.so.3gf -> /usr/lib/lapack/liblapack.so.3gf not owned These files seem to have been left by dependencies rather than by packages being explicitly tested. 0m15.1s INFO: PASS: Installation and purging test. 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'umount', '/proc'] 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpih0i0x', 'umount', '/proc'] 0m15.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpih0i0x'] 0m15.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpih0i0x'] 0m15.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpih0i0x 0m15.5s INFO: PASS: All tests. 0m15.5s INFO: piuparts run ends. ret=0 End: 2014-10-03 08:45:27 UTC