Start: 2014-02-26 15:05:28 UTC Package: python-mvpa Priority: optional Section: python Installed-Size: 4148 Maintainer: NeuroDebian Team Architecture: all Source: pymvpa Version: 0.4.5~dev23-2 Provides: python2.5-mvpa, python2.6-mvpa Depends: python (>= 2.5), python-support (>= 0.90.0), python2.6, python-numpy, python-mvpa-lib (>= 0.4.5~dev23-2) Recommends: python-nifti, python-psyco, python-mdp, python-scipy, shogun-python-modular, python-pywt, python-matplotlib, python-reportlab Suggests: fslview, fsl, python-nose, python-lxml, python-openopt, python-rpy, python-mvpa-doc Filename: pool/main/p/pymvpa/python-mvpa_0.4.5~dev23-2_all.deb Size: 2165668 MD5sum: a763f5d8f490941c3355675cf74f3c92 SHA1: 018bf9ba04c4dd670875f07b84bfac31f7527fef SHA256: 4f8e3ae5c5a1ab35658734b4343e36ac36674c6bf3d2f730ad225b94a75b9f29 Description: multivariate pattern analysis with Python Python module to ease pattern classification analyses of large datasets. It provides high-level abstraction of typical processing steps (e.g. data preparation, classification, feature selection, generalization testing), a number of implementations of some popular algorithms (e.g. kNN, GNB, Ridge Regressions, Sparse Multinomial Logistic Regression), and bindings to external machine learning libraries (libsvm, shogun). . While it is not limited to neuroimaging data (e.g. fMRI, or EEG) it is eminently suited for such datasets. Homepage: http://www.pymvpa.org Python-Version: 2.5, 2.6 Tag: devel::lang:python, devel::library, field::medicine:imaging, implemented-in::python, interface::commandline, interface::text-mode, role::devel-lib, role::program, scope::application, use::analysing, works-with::image, works-with::image:raster, works-with-format::plaintext Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 35m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt python-mvpa=0.4.5~dev23-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at http://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.57.1~201402172317~0.57-12-g4a108e2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt python-mvpa=0.4.5~dev23-2 0m0.0s INFO: Running on: Linux piu-slave-bm-a 3.2.0-4-amd64 #1 SMP Debian 3.2.54-2 x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpumkm2D 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpumkm2D 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpumkm2D', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpumkm2D', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.8s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ squeeze main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'apt-get', 'update'] 0m3.4s DUMP: Get:1 http://mirror.bm.debian.org squeeze Release.gpg [1672 B] Ign http://mirror.bm.debian.org/debian/ squeeze/main Translation-en Get:2 http://mirror.bm.debian.org squeeze Release [96.0 kB] Get:3 http://mirror.bm.debian.org squeeze/main amd64 Packages [8388 kB] Fetched 8486 kB in 0s (9051 kB/s) Reading package lists... 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'apt-get', 'update'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'apt-get', '-yf', 'dist-upgrade'] 0m4.5s DUMP: Reading package lists... Building dependency tree... The following packages will be upgraded: base-files gnupg gpgv tzdata 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3067 kB of archives. After this operation, 52.2 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main base-files amd64 6.0squeeze9 [76.1 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main gpgv amd64 1.4.10-4+squeeze4 [222 kB] Get:3 http://mirror.bm.debian.org/debian/ squeeze/main gnupg amd64 1.4.10-4+squeeze4 [2148 kB] Get:4 http://mirror.bm.debian.org/debian/ squeeze/main tzdata all 2013i-0squeeze1 [621 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 3067 kB in 0s (39.5 MB/s) (Reading database ... 6155 files and directories currently installed.) Preparing to replace base-files 6.0squeeze8 (using .../base-files_6.0squeeze9_amd64.deb) ... Unpacking replacement base-files ... Setting up base-files (6.0squeeze9) ... Installing new version of config file /etc/debian_version ... (Reading database ... 6155 files and directories currently installed.) Preparing to replace gpgv 1.4.10-4+squeeze3 (using .../gpgv_1.4.10-4+squeeze4_amd64.deb) ... Unpacking replacement gpgv ... Setting up gpgv (1.4.10-4+squeeze4) ... (Reading database ... 6155 files and directories currently installed.) Preparing to replace gnupg 1.4.10-4+squeeze3 (using .../gnupg_1.4.10-4+squeeze4_amd64.deb) ... Unpacking replacement gnupg ... Setting up gnupg (1.4.10-4+squeeze4) ... (Reading database ... 6155 files and directories currently installed.) Preparing to replace tzdata 2013d-0squeeze1 (using .../tzdata_2013i-0squeeze1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2013i-0squeeze1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Feb 26 15:05:33 UTC 2014. Universal Time is now: Wed Feb 26 15:05:33 UTC 2014. Run 'dpkg-reconfigure tzdata' if you wish to change it. 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'apt-get', '-yf', 'dist-upgrade'] 0m4.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpumkm2D/tmp/scripts/ 0m4.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-squeeze to /srv/piuparts.debian.org/tmp/tmpumkm2D/tmp/scripts/ 0m4.5s INFO: Running scripts post_setup 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/post_setup_experimental'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/post_setup_experimental'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/post_setup_forbid_home'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/post_setup_forbid_home'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' `/bin/sync' -> `true' 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m5.3s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Reading state information... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 320 kB of archives. After this operation, 1532 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main adduser all 3.112+nmu2 [250 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main ucf all 3.0025+nmu1 [69.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 320 kB in 0s (15.3 MB/s) Selecting previously deselected package adduser. (Reading database ... 6135 files and directories currently installed.) Unpacking adduser (from .../adduser_3.112+nmu2_all.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu1_all.deb) ... Moving old data out of the way Setting up adduser (3.112+nmu2) ... Setting up ucf (3.0025+nmu1) ... 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'apt-get', 'clean'] 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'apt-get', 'clean'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'dpkg', '--get-selections', '*'] 0m5.8s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libgcc1 install liblocale-gettext-perl install liblzma2 install libncurses5 install libpam-modules install libpam-runtime install libpam0g install libreadline6 install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mount install ncurses-base install ncurses-bin install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'dpkg', '--get-selections', '*'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'dpkg-divert', '--list'] 0m5.8s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'dpkg-divert', '--list'] 0m5.8s INFO: apt-cache does not know about any of the requested packages 0m5.8s INFO: Running scripts pre_test 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/pre_test_root_password'] 0m5.8s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/pre_test_root_password'] 0m5.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpumkm2D'] 0m6.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpumkm2D'] 0m6.9s DEBUG: No broken symlinks as far as we can find. 0m6.9s INFO: Running scripts pre_install 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/pre_install_database-server'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/pre_install_database-server'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/pre_install_exceptions'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/pre_install_exceptions'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/pre_install_extras'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/pre_install_extras'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'apt-cache', 'show', 'python-mvpa=0.4.5~dev23-2'] 0m7.0s DUMP: Package: python-mvpa Priority: optional Section: python Installed-Size: 4148 Maintainer: NeuroDebian Team Architecture: all Source: pymvpa Version: 0.4.5~dev23-2 Provides: python2.5-mvpa, python2.6-mvpa Depends: python (>= 2.5), python-support (>= 0.90.0), python2.6, python-numpy, python-mvpa-lib (>= 0.4.5~dev23-2) Recommends: python-nifti, python-psyco, python-mdp, python-scipy, shogun-python-modular, python-pywt, python-matplotlib, python-reportlab Suggests: fslview, fsl, python-nose, python-lxml, python-openopt, python-rpy, python-mvpa-doc Filename: pool/main/p/pymvpa/python-mvpa_0.4.5~dev23-2_all.deb Size: 2165668 MD5sum: a763f5d8f490941c3355675cf74f3c92 SHA1: 018bf9ba04c4dd670875f07b84bfac31f7527fef SHA256: 4f8e3ae5c5a1ab35658734b4343e36ac36674c6bf3d2f730ad225b94a75b9f29 Description: multivariate pattern analysis with Python Python module to ease pattern classification analyses of large datasets. It provides high-level abstraction of typical processing steps (e.g. data preparation, classification, feature selection, generalization testing), a number of implementations of some popular algorithms (e.g. kNN, GNB, Ridge Regressions, Sparse Multinomial Logistic Regression), and bindings to external machine learning libraries (libsvm, shogun). . While it is not limited to neuroimaging data (e.g. fMRI, or EEG) it is eminently suited for such datasets. Homepage: http://www.pymvpa.org Python-Version: 2.5, 2.6 Tag: devel::lang:python, devel::library, field::medicine:imaging, implemented-in::python, interface::commandline, interface::text-mode, role::devel-lib, role::program, scope::application, use::analysing, works-with::image, works-with::image:raster, works-with-format::plaintext 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'apt-cache', 'show', 'python-mvpa=0.4.5~dev23-2'] 0m7.0s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed Depends: python (>= 2.5), python-support (>= 0.90.0), python2.6, python-numpy, python-mvpa-lib (>= 0.4.5~dev23-2) 0m7.0s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpt_tnQj/piuparts-depends-dummy'] 0m7.0s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpt_tnQj/piuparts-depends-dummy.deb'. 0m7.0s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpt_tnQj/piuparts-depends-dummy'] 0m7.0s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpt_tnQj/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpumkm2D/tmp 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m7.0s DUMP: Selecting previously deselected package piuparts-depends-dummy. (Reading database ... 6258 files and directories currently installed.) Unpacking piuparts-depends-dummy (from tmp/piuparts-depends-dummy.deb) ... dpkg: dependency problems prevent configuration of piuparts-depends-dummy: piuparts-depends-dummy depends on python (>= 2.5); however: Package python is not installed. piuparts-depends-dummy depends on python-support (>= 0.90.0); however: Package python-support is not installed. piuparts-depends-dummy depends on python2.6; however: Package python2.6 is not installed. piuparts-depends-dummy depends on python-numpy; however: Package python-numpy is not installed. piuparts-depends-dummy depends on python-mvpa-lib (>= 0.4.5~dev23-2); however: Package python-mvpa-lib is not installed. dpkg: error processing piuparts-depends-dummy (--install): dependency problems - leaving unconfigured Errors were encountered while processing: piuparts-depends-dummy 0m7.0s DEBUG: Command failed (status=1), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'apt-get', '-yf', 'install'] 0m12.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Correcting dependencies... Done The following extra packages will be installed: libblas3gf libexpat1 libgfortran3 liblapack3gf libncursesw5 libsqlite3-0 libssl0.9.8 libsvm2 mime-support python python-minimal python-mvpa-lib python-numpy python-support python2.6 python2.6-minimal Suggested packages: python-doc python-tk python-profiler python-numpy-doc python-numpy-dbg python-nose python-dev gfortran python2.6-doc python2.6-profiler binutils binfmt-support Recommended packages: libgpm2 file The following NEW packages will be installed: libblas3gf libexpat1 libgfortran3 liblapack3gf libncursesw5 libsqlite3-0 libssl0.9.8 libsvm2 mime-support python python-minimal python-mvpa-lib python-numpy python-support python2.6 python2.6-minimal 0 upgraded, 16 newly installed, 0 to remove and 0 not upgraded. 1 not fully installed or removed. Need to get 13.3 MB of archives. After this operation, 40.8 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main libssl0.9.8 amd64 0.9.8o-4squeeze14 [1002 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main python2.6-minimal amd64 2.6.6-8+b1 [1520 kB] Get:3 http://mirror.bm.debian.org/debian/ squeeze/main mime-support all 3.48-1 [34.2 kB] Get:4 http://mirror.bm.debian.org/debian/ squeeze/main libexpat1 amd64 2.0.1-7+squeeze1 [138 kB] Get:5 http://mirror.bm.debian.org/debian/ squeeze/main libncursesw5 amd64 5.7+20100313-5 [390 kB] Get:6 http://mirror.bm.debian.org/debian/ squeeze/main libsqlite3-0 amd64 3.7.3-1 [397 kB] Get:7 http://mirror.bm.debian.org/debian/ squeeze/main python2.6 amd64 2.6.6-8+b1 [2455 kB] Get:8 http://mirror.bm.debian.org/debian/ squeeze/main python-minimal all 2.6.6-3+squeeze7 [33.8 kB] Get:9 http://mirror.bm.debian.org/debian/ squeeze/main python all 2.6.6-3+squeeze7 [169 kB] Get:10 http://mirror.bm.debian.org/debian/ squeeze/main python-support all 1.0.10 [33.0 kB] Get:11 http://mirror.bm.debian.org/debian/ squeeze/main libgfortran3 amd64 4.4.5-8 [291 kB] Get:12 http://mirror.bm.debian.org/debian/ squeeze/main libblas3gf amd64 1.2-8 [229 kB] Get:13 http://mirror.bm.debian.org/debian/ squeeze/main liblapack3gf amd64 3.2.1-8 [4434 kB] Get:14 http://mirror.bm.debian.org/debian/ squeeze/main python-numpy amd64 1:1.4.1-5 [2080 kB] Get:15 http://mirror.bm.debian.org/debian/ squeeze/main libsvm2 amd64 2.91-1 [42.6 kB] Get:16 http://mirror.bm.debian.org/debian/ squeeze/main python-mvpa-lib amd64 0.4.5~dev23-2 [69.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.3 MB in 0s (27.0 MB/s) Selecting previously deselected package libssl0.9.8. (Reading database ... 6258 files and directories currently installed.) Unpacking libssl0.9.8 (from .../libssl0.9.8_0.9.8o-4squeeze14_amd64.deb) ... Selecting previously deselected package python2.6-minimal. Unpacking python2.6-minimal (from .../python2.6-minimal_2.6.6-8+b1_amd64.deb) ... Selecting previously deselected package mime-support. Unpacking mime-support (from .../mime-support_3.48-1_all.deb) ... Selecting previously deselected package libexpat1. Unpacking libexpat1 (from .../libexpat1_2.0.1-7+squeeze1_amd64.deb) ... Selecting previously deselected package libncursesw5. Unpacking libncursesw5 (from .../libncursesw5_5.7+20100313-5_amd64.deb) ... Selecting previously deselected package libsqlite3-0. Unpacking libsqlite3-0 (from .../libsqlite3-0_3.7.3-1_amd64.deb) ... Selecting previously deselected package python2.6. Unpacking python2.6 (from .../python2.6_2.6.6-8+b1_amd64.deb) ... Selecting previously deselected package python-minimal. Unpacking python-minimal (from .../python-minimal_2.6.6-3+squeeze7_all.deb) ... Selecting previously deselected package python. Unpacking python (from .../python_2.6.6-3+squeeze7_all.deb) ... Selecting previously deselected package python-support. Unpacking python-support (from .../python-support_1.0.10_all.deb) ... Selecting previously deselected package libgfortran3. Unpacking libgfortran3 (from .../libgfortran3_4.4.5-8_amd64.deb) ... Selecting previously deselected package libblas3gf. Unpacking libblas3gf (from .../libblas3gf_1.2-8_amd64.deb) ... Selecting previously deselected package liblapack3gf. Unpacking liblapack3gf (from .../liblapack3gf_3.2.1-8_amd64.deb) ... Selecting previously deselected package python-numpy. Unpacking python-numpy (from .../python-numpy_1%3a1.4.1-5_amd64.deb) ... Selecting previously deselected package libsvm2. Unpacking libsvm2 (from .../libsvm2_2.91-1_amd64.deb) ... Selecting previously deselected package python-mvpa-lib. Unpacking python-mvpa-lib (from .../python-mvpa-lib_0.4.5~dev23-2_amd64.deb) ... Setting up libssl0.9.8 (0.9.8o-4squeeze14) ... Setting up python2.6-minimal (2.6.6-8+b1) ... Setting up mime-support (3.48-1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up libexpat1 (2.0.1-7+squeeze1) ... Setting up libncursesw5 (5.7+20100313-5) ... Setting up libsqlite3-0 (3.7.3-1) ... Setting up python2.6 (2.6.6-8+b1) ... Setting up python-minimal (2.6.6-3+squeeze7) ... Setting up python (2.6.6-3+squeeze7) ... Setting up python-support (1.0.10) ... Setting up libgfortran3 (4.4.5-8) ... Setting up libblas3gf (1.2-8) ... update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode. Setting up liblapack3gf (3.2.1-8) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode. Setting up python-numpy (1:1.4.1-5) ... Setting up libsvm2 (2.91-1) ... Setting up python-mvpa-lib (0.4.5~dev23-2) ... Setting up piuparts-depends-dummy (0.invalid.0) ... Processing triggers for python-support ... 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'apt-get', '-yf', 'install'] 0m12.4s INFO: Installation of ['tmp/piuparts-depends-dummy.deb'] ok 0m12.4s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpumkm2D/tmp/piuparts-depends-dummy.deb 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m12.4s DUMP: piuparts-depends-dummy install ok installed 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m12.4s DUMP: (Reading database ... 7645 files and directories currently installed.) Removing piuparts-depends-dummy ... 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'apt-get', 'clean'] 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'apt-get', 'clean'] 0m13.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpumkm2D'] 0m13.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpumkm2D'] 0m14.5s ERROR: WARN: Broken symlinks: /usr/include/python2.5/numpy -> ../../lib/pymodules/python2.5/numpy/core/include/numpy /usr/include/python2.5_d/numpy -> ../../lib/pymodules/python2.5/numpy/core/include/numpy /usr/lib/python2.4/site-packages/python-support.pth -> ../../pymodules/python2.4/.path /usr/lib/python2.5/site-packages/python-support.pth -> ../../pymodules/python2.5/.path 0m14.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'apt-cache', 'policy'] 0m14.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages release v=6.0.9,o=Debian,a=oldstable,n=squeeze,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 0m14.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'apt-cache', 'policy'] 0m14.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'apt-cache', 'policy', 'python-mvpa'] 0m14.5s DUMP: python-mvpa: Installed: (none) Candidate: 0.4.5~dev23-2 Version table: 0.4.5~dev23-2 0 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages 0m14.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'apt-cache', 'policy', 'python-mvpa'] 0m14.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'apt-get', '-y', 'install', 'python-mvpa=0.4.5~dev23-2'] 0m15.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Suggested packages: fslview fsl python-nose python-lxml python-openopt python-rpy python-mvpa-doc Recommended packages: python-nifti python-psyco python-mdp python-scipy shogun-python-modular python-pywt python-matplotlib python-reportlab The following NEW packages will be installed: python-mvpa 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 2166 kB of archives. After this operation, 4248 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main python-mvpa all 0.4.5~dev23-2 [2166 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2166 kB in 0s (15.0 MB/s) Selecting previously deselected package python-mvpa. (Reading database ... 7645 files and directories currently installed.) Unpacking python-mvpa (from .../python-mvpa_0.4.5~dev23-2_all.deb) ... Setting up python-mvpa (0.4.5~dev23-2) ... Processing triggers for python-support ... /usr/lib/pymodules/python2.6/mvpa/misc/transformers.py:361: SyntaxWarning: assertion is always true, perhaps remove parentheses? assert(dist.args[0], Nindexes-1) 0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'apt-get', '-y', 'install', 'python-mvpa=0.4.5~dev23-2'] 0m15.7s INFO: Running scripts post_install 0m15.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpumkm2D'] 0m16.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpumkm2D'] 0m17.4s ERROR: WARN: Broken symlinks: /usr/include/python2.5/numpy -> ../../lib/pymodules/python2.5/numpy/core/include/numpy /usr/include/python2.5_d/numpy -> ../../lib/pymodules/python2.5/numpy/core/include/numpy /usr/lib/python2.4/site-packages/python-support.pth -> ../../pymodules/python2.4/.path /usr/lib/python2.5/site-packages/python-support.pth -> ../../pymodules/python2.5/.path 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'dpkg', '--get-selections', '*'] 0m17.4s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libblas3gf install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libexpat1 install libgcc1 install libgfortran3 install liblapack3gf install liblocale-gettext-perl install liblzma2 install libncurses5 install libncursesw5 install libpam-modules install libpam-runtime install libpam0g install libreadline6 install libselinux1 install libsepol1 install libslang2 install libsqlite3-0 install libss2 install libssl0.9.8 install libstdc++6 install libsvm2 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mime-support install mount install ncurses-base install ncurses-bin install passwd install perl-base install python install python-minimal install python-mvpa install python-mvpa-lib install python-numpy install python-support install python2.6 install python2.6-minimal install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'dpkg', '--get-selections', '*'] 0m18.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpumkm2D', '-ac'] 0m19.0s DUMP: debsums: no md5sums for mawk 0m19.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpumkm2D', '-ac'] 0m19.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m19.0s DUMP: 0.11.3~bpo70+1 0m19.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m19.0s INFO: Running adequate version 0.11.3~bpo70+1 now. 0m19.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'python-mvpa'] 0m19.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'python-mvpa'] 0m19.1s INFO: Running scripts pre_remove 0m19.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m19.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m19.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m19.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m19.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m19.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m19.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/pre_remove_exceptions'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/pre_remove_exceptions'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'apt-get', 'remove', 'liblapack3gf', 'python2.6-minimal', 'libncursesw5', 'libblas3gf', 'python', 'python-numpy', 'python2.6', 'libsqlite3-0', 'libsvm2', 'libssl0.9.8', 'python-support', 'mime-support', 'libexpat1', 'python-mvpa-lib', 'python-minimal', 'libgfortran3', 'python-mvpa'] 0m20.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libblas3gf libexpat1 libgfortran3 liblapack3gf libncursesw5 libsqlite3-0 libssl0.9.8 libsvm2 mime-support python python-minimal python-mvpa python-mvpa-lib python-numpy python-support python2.6 python2.6-minimal 0 upgraded, 0 newly installed, 17 to remove and 0 not upgraded. After this operation, 45.0 MB disk space will be freed. (Reading database ... 7903 files and directories currently installed.) Removing python-mvpa ... Removing python-mvpa-lib ... Removing python-numpy ... Removing liblapack3gf ... Removing libblas3gf ... Removing python-support ... Removing python ... Removing python2.6 ... Removing libexpat1 ... Removing libgfortran3 ... Removing libncursesw5 ... Removing libsqlite3-0 ... Removing python-minimal ... Removing python2.6-minimal ... Removing libssl0.9.8 ... Removing libsvm2 ... Removing mime-support ... 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'apt-get', 'remove', 'liblapack3gf', 'python2.6-minimal', 'libncursesw5', 'libblas3gf', 'python', 'python-numpy', 'python2.6', 'libsqlite3-0', 'libsvm2', 'libssl0.9.8', 'python-support', 'mime-support', 'libexpat1', 'python-mvpa-lib', 'python-minimal', 'libgfortran3', 'python-mvpa'] 0m20.2s INFO: Running scripts post_remove 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/post_remove_exceptions_lenny'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/post_remove_exceptions_lenny'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/post_remove_extras'] 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/post_remove_extras'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'dpkg', '--purge', 'liblapack3gf', 'python2.6-minimal', 'libncursesw5', 'libblas3gf', 'python', 'python-numpy', 'python2.6', 'libsqlite3-0', 'libsvm2', 'libssl0.9.8', 'python-support', 'mime-support', 'libexpat1', 'python-mvpa-lib', 'python-minimal', 'libgfortran3'] 0m20.5s DUMP: (Reading database ... 6263 files and directories currently installed.) Removing liblapack3gf ... Purging configuration files for liblapack3gf ... Removing python2.6-minimal ... Purging configuration files for python2.6-minimal ... Removing libncursesw5 ... Purging configuration files for libncursesw5 ... Removing libblas3gf ... Purging configuration files for libblas3gf ... Removing python ... Purging configuration files for python ... dpkg: warning: ignoring request to remove python-numpy which isn't installed. Removing python2.6 ... Purging configuration files for python2.6 ... Removing libsqlite3-0 ... Purging configuration files for libsqlite3-0 ... Removing libsvm2 ... Purging configuration files for libsvm2 ... Removing libssl0.9.8 ... Purging configuration files for libssl0.9.8 ... Removing python-support ... Purging configuration files for python-support ... Removing mime-support ... Purging configuration files for mime-support ... Removing libexpat1 ... Purging configuration files for libexpat1 ... dpkg: warning: ignoring request to remove python-mvpa-lib which isn't installed. dpkg: warning: ignoring request to remove python-minimal which isn't installed. Removing libgfortran3 ... Purging configuration files for libgfortran3 ... 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'dpkg', '--purge', 'liblapack3gf', 'python2.6-minimal', 'libncursesw5', 'libblas3gf', 'python', 'python-numpy', 'python2.6', 'libsqlite3-0', 'libsvm2', 'libssl0.9.8', 'python-support', 'mime-support', 'libexpat1', 'python-mvpa-lib', 'python-minimal', 'libgfortran3'] 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'dpkg', '--purge', 'python-mvpa'] 0m20.5s DUMP: dpkg: warning: ignoring request to remove python-mvpa which isn't installed. 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'dpkg', '--purge', 'python-mvpa'] 0m20.5s INFO: Running scripts post_purge 0m20.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/post_purge_exceptions'] 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'tmp/scripts/post_purge_exceptions'] 0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'dpkg', '--purge', '--pending'] 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'dpkg', '--purge', '--pending'] 0m20.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'dpkg', '--remove', '--pending'] 0m20.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'dpkg', '--remove', '--pending'] 0m20.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpumkm2D'] 0m20.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpumkm2D'] 0m21.7s ERROR: WARN: Broken symlinks: /etc/alternatives/liblapack.so.3gf -> /usr/lib/lapack/liblapack.so.3gf 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'dpkg-divert', '--list'] 0m21.7s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'dpkg-divert', '--list'] 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'apt-get', 'clean'] 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'apt-get', 'clean'] 0m22.7s INFO: Warning: Package purging left files on system: /etc/alternatives/liblapack.so.3gf -> /usr/lib/lapack/liblapack.so.3gf not owned These files seem to have been left by dependencies rather than by packages being explicitly tested. 0m22.7s INFO: PASS: Installation and purging test. 0m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'umount', '/proc'] 0m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpumkm2D', 'umount', '/proc'] 0m23.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpumkm2D'] 0m23.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpumkm2D'] 0m23.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpumkm2D 0m23.1s INFO: PASS: All tests. 0m23.1s INFO: piuparts run ends. ret=0 End: 2014-02-26 15:05:51 UTC