Start: 2014-09-12 02:13:49 UTC Package: wise Priority: optional Section: science Installed-Size: 12492 Maintainer: Debian Med Packaging Team Architecture: amd64 Version: 2.4.1-8 Depends: libc6 (>= 2.7), libglib2.0-0 (>= 2.12.0) Suggests: wise-doc (= 2.4.1-8) Filename: pool/main/w/wise/wise_2.4.1-8_amd64.deb Size: 4520126 MD5sum: b46c48ff75d8161f58a5391f11441aa7 SHA1: 2603437ae41335b00c8c3d17b55b523d7a692c14 SHA256: d330516f9d7d4a109a99702e54d7d2e07e43240d13737f4dd61a873da1c5e3c9 Description: comparison of biopolymers, commonly DNA and protein sequences Wise2 is a package focused on comparisons of biopolymers, commonly DNA and protein sequences. There are many other packages which do this, probably the best known being BLAST package (from NCBI) and the Fasta package (from Bill Pearson). There are other packages, such as the HMMER package (Sean Eddy) or SAM package (UC Santa Cruz) focused on hidden Markov models (HMMs) of biopolymers. . Wise2's particular forte is the comparison of DNA sequence at the level of its protein translation. This comparison allows the simultaneous prediction of say gene structure with homology based alignment. . Wise2 also contains other algorithms, such as the venerable Smith-Waterman algorithm, or more modern ones such as Stephen Altschul's generalised gap penalties, or even experimental ones developed in house, such as dba. The development of these algorithms is due to the ease of developing such algorithms in the environment used by Wise2. . Wise2 has also been written with an eye for reuse and maintainability. Although it is a pure C package you can access its functionality directly in Perl. Parts of the package (or the entire package) can be used by other C or C++ programs without namespace clashes as all externally linked variables have the unique identifier Wise2 prepended. Homepage: http://www.ebi.ac.uk/~birney/wise2/ Tag: field::biology, field::biology:bioinformatics, implemented-in::c, interface::commandline, role::program, scope::utility, use::comparing Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 35m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt wise=2.4.1-8 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.59 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --scriptsdir /etc/piuparts/scripts-squeeze --warn-on-debsums-errors --mirror 'http://mirror.bm.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze --no-upgrade-test --apt wise=2.4.1-8 0m0.0s INFO: Running on: Linux piu-slave-bm-a 3.2.0-4-amd64 #1 SMP Debian 3.2.60-1+deb7u3 x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpvwfKdz 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpvwfKdz 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.8s DUMP: tar: ./proc: time stamp 2014-10-15 13:49:47 is 2892956.854078666 s in the future 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'mount', '-t', 'proc', 'proc', '/proc'] 0m1.8s DEBUG: sources.list: deb http://mirror.bm.debian.org/debian/ squeeze main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'apt-get', 'update'] 0m1.9s DUMP: Hit http://mirror.bm.debian.org squeeze Release.gpg Ign http://mirror.bm.debian.org/debian/ squeeze/main Translation-en Hit http://mirror.bm.debian.org squeeze Release Hit http://mirror.bm.debian.org squeeze/main amd64 Packages Reading package lists... 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'apt-get', 'update'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'apt-get', '-yf', 'dist-upgrade'] 0m2.3s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'apt-get', '-yf', 'dist-upgrade'] 0m2.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpvwfKdz/tmp/scripts/ 0m2.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts-squeeze to /srv/piuparts.debian.org/tmp/tmpvwfKdz/tmp/scripts/ 0m2.3s INFO: Running scripts post_setup 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/post_setup_experimental'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/post_setup_experimental'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/post_setup_forbid_home'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/post_setup_forbid_home'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m4.0s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 320 kB of archives. After this operation, 1532 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main adduser all 3.112+nmu2 [250 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main ucf all 3.0025+nmu1 [69.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 320 kB in 0s (20.9 MB/s) Selecting previously deselected package adduser. (Reading database ... 6138 files and directories currently installed.) Unpacking adduser (from .../adduser_3.112+nmu2_all.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu1_all.deb) ... Moving old data out of the way Setting up adduser (3.112+nmu2) ... Setting up ucf (3.0025+nmu1) ... 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/post_setup_squeeze-fake-essential'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'apt-get', 'clean'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'apt-get', 'clean'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'dpkg', '--get-selections', '*'] 0m4.5s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libgcc1 install liblocale-gettext-perl install liblzma2 install libncurses5 install libpam-modules install libpam-runtime install libpam0g install libreadline6 install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mount install ncurses-base install ncurses-bin install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install xz-utils install zlib1g install 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'dpkg', '--get-selections', '*'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'dpkg-divert', '--list'] 0m4.5s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'dpkg-divert', '--list'] 0m4.5s INFO: apt-cache does not know about any of the requested packages 0m4.5s INFO: Running scripts pre_test 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/pre_test_root_password'] 0m4.5s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/pre_test_root_password'] 0m4.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvwfKdz'] 0m4.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvwfKdz'] 0m5.6s DEBUG: No broken symlinks as far as we can find. 0m5.6s INFO: Running scripts pre_install 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/pre_install_database-server'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/pre_install_database-server'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/pre_install_exceptions'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/pre_install_exceptions'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/pre_install_extras'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/pre_install_extras'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'apt-cache', 'show', 'wise=2.4.1-8'] 0m5.7s DUMP: Package: wise Priority: optional Section: science Installed-Size: 12492 Maintainer: Debian Med Packaging Team Architecture: amd64 Version: 2.4.1-8 Depends: libc6 (>= 2.7), libglib2.0-0 (>= 2.12.0) Suggests: wise-doc (= 2.4.1-8) Filename: pool/main/w/wise/wise_2.4.1-8_amd64.deb Size: 4520126 MD5sum: b46c48ff75d8161f58a5391f11441aa7 SHA1: 2603437ae41335b00c8c3d17b55b523d7a692c14 SHA256: d330516f9d7d4a109a99702e54d7d2e07e43240d13737f4dd61a873da1c5e3c9 Description: comparison of biopolymers, commonly DNA and protein sequences Wise2 is a package focused on comparisons of biopolymers, commonly DNA and protein sequences. There are many other packages which do this, probably the best known being BLAST package (from NCBI) and the Fasta package (from Bill Pearson). There are other packages, such as the HMMER package (Sean Eddy) or SAM package (UC Santa Cruz) focused on hidden Markov models (HMMs) of biopolymers. . Wise2's particular forte is the comparison of DNA sequence at the level of its protein translation. This comparison allows the simultaneous prediction of say gene structure with homology based alignment. . Wise2 also contains other algorithms, such as the venerable Smith-Waterman algorithm, or more modern ones such as Stephen Altschul's generalised gap penalties, or even experimental ones developed in house, such as dba. The development of these algorithms is due to the ease of developing such algorithms in the environment used by Wise2. . Wise2 has also been written with an eye for reuse and maintainability. Although it is a pure C package you can access its functionality directly in Perl. Parts of the package (or the entire package) can be used by other C or C++ programs without namespace clashes as all externally linked variables have the unique identifier Wise2 prepended. Homepage: http://www.ebi.ac.uk/~birney/wise2/ Tag: field::biology, field::biology:bioinformatics, implemented-in::c, interface::commandline, role::program, scope::utility, use::comparing 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'apt-cache', 'show', 'wise=2.4.1-8'] 0m5.7s DEBUG: metapackage: Package: piuparts-depends-dummy Version: 0.invalid.0 Architecture: all Maintainer: piuparts developers team Description: Dummy package to satisfy dependencies - created by piuparts This package was created automatically by piuparts and can safely be removed Depends: libc6 (>= 2.7), libglib2.0-0 (>= 2.12.0) 0m5.7s DEBUG: Starting command: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpMWmaQl/piuparts-depends-dummy'] 0m5.7s DUMP: dpkg-deb: warning: not checking contents of control area dpkg-deb: building an unknown package in '/srv/piuparts.debian.org/tmp/tmpMWmaQl/piuparts-depends-dummy.deb'. 0m5.7s DEBUG: Command ok: ['dpkg-deb', '-b', '-Zgzip', '--nocheck', '/srv/piuparts.debian.org/tmp/tmpMWmaQl/piuparts-depends-dummy'] 0m5.7s DEBUG: Copying /srv/piuparts.debian.org/tmp/tmpMWmaQl/piuparts-depends-dummy.deb to /srv/piuparts.debian.org/tmp/tmpvwfKdz/tmp 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m5.7s DUMP: Selecting previously deselected package piuparts-depends-dummy. (Reading database ... 6261 files and directories currently installed.) Unpacking piuparts-depends-dummy (from tmp/piuparts-depends-dummy.deb) ... dpkg: dependency problems prevent configuration of piuparts-depends-dummy: piuparts-depends-dummy depends on libglib2.0-0 (>= 2.12.0); however: Package libglib2.0-0 is not installed. dpkg: error processing piuparts-depends-dummy (--install): dependency problems - leaving unconfigured Errors were encountered while processing: piuparts-depends-dummy 0m5.7s DEBUG: Command failed (status=1), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'apt-get', '-yf', 'install'] 0m6.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Correcting dependencies... Done The following extra packages will be installed: libglib2.0-0 libpcre3 Recommended packages: libglib2.0-data shared-mime-info The following NEW packages will be installed: libglib2.0-0 libpcre3 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 1 not fully installed or removed. Need to get 1357 kB of archives. After this operation, 2937 kB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main libpcre3 amd64 8.02-1.1 [234 kB] Get:2 http://mirror.bm.debian.org/debian/ squeeze/main libglib2.0-0 amd64 2.24.2-1 [1122 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1357 kB in 0s (28.5 MB/s) Selecting previously deselected package libpcre3. (Reading database ... 6261 files and directories currently installed.) Unpacking libpcre3 (from .../libpcre3_8.02-1.1_amd64.deb) ... Selecting previously deselected package libglib2.0-0. Unpacking libglib2.0-0 (from .../libglib2.0-0_2.24.2-1_amd64.deb) ... Setting up libpcre3 (8.02-1.1) ... Setting up libglib2.0-0 (2.24.2-1) ... Setting up piuparts-depends-dummy (0.invalid.0) ... 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'apt-get', '-yf', 'install'] 0m6.5s INFO: Installation of ['tmp/piuparts-depends-dummy.deb'] ok 0m6.5s DEBUG: Removing /srv/piuparts.debian.org/tmp/tmpvwfKdz/tmp/piuparts-depends-dummy.deb 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m6.5s DUMP: piuparts-depends-dummy install ok installed 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'dpkg-query', '-f', '${Package} ${Status}\n', '-W', 'piuparts-depends-dummy'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m6.6s DUMP: (Reading database ... 6299 files and directories currently installed.) Removing piuparts-depends-dummy ... 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'dpkg', '--purge', 'piuparts-depends-dummy'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'apt-get', 'clean'] 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'apt-get', 'clean'] 0m7.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvwfKdz'] 0m7.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvwfKdz'] 0m8.1s DEBUG: No broken symlinks as far as we can find. 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'apt-cache', 'policy'] 0m8.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages release v=6.0.10,o=Debian,a=oldstable,n=squeeze,l=Debian,c=main origin mirror.bm.debian.org Pinned packages: 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'apt-cache', 'policy'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'apt-cache', 'policy', 'wise'] 0m8.2s DUMP: wise: Installed: (none) Candidate: 2.4.1-8 Version table: 2.4.1-8 0 500 http://mirror.bm.debian.org/debian/ squeeze/main amd64 Packages 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'apt-cache', 'policy', 'wise'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'apt-get', '-y', 'install', 'wise=2.4.1-8'] 0m9.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Suggested packages: wise-doc The following NEW packages will be installed: wise 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 4520 kB of archives. After this operation, 12.8 MB of additional disk space will be used. Get:1 http://mirror.bm.debian.org/debian/ squeeze/main wise amd64 2.4.1-8 [4520 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 4520 kB in 0s (28.4 MB/s) Selecting previously deselected package wise. (Reading database ... 6299 files and directories currently installed.) Unpacking wise (from .../wise_2.4.1-8_amd64.deb) ... Setting up wise (2.4.1-8) ... 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'apt-get', '-y', 'install', 'wise=2.4.1-8'] 0m9.0s INFO: Running scripts post_install 0m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/post_install_exceptions'] 0m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/post_install_exceptions'] 0m9.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvwfKdz'] 0m9.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvwfKdz'] 0m10.1s DEBUG: No broken symlinks as far as we can find. 0m10.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'dpkg', '--get-selections', '*'] 0m10.1s DUMP: adduser install apt install base-files install base-passwd install bash install bsdutils install coreutils install dash install debconf install debconf-i18n install debian-archive-keyring install debianutils install diffutils install dpkg install e2fslibs install e2fsprogs install findutils install gcc-4.4-base install gnupg install gpgv install grep install gzip install hostname install initscripts install insserv install libacl1 install libattr1 install libblkid1 install libbz2-1.0 install libc-bin install libc6 install libcomerr2 install libdb4.8 install libgcc1 install libglib2.0-0 install liblocale-gettext-perl install liblzma2 install libncurses5 install libpam-modules install libpam-runtime install libpam0g install libpcre3 install libreadline6 install libselinux1 install libsepol1 install libslang2 install libss2 install libstdc++6 install libtext-charwidth-perl install libtext-iconv-perl install libtext-wrapi18n-perl install libusb-0.1-4 install libuuid1 install login install lsb-base install mawk install mount install ncurses-base install ncurses-bin install passwd install perl-base install readline-common install sed install sensible-utils install sysv-rc install sysvinit install sysvinit-utils install tar install tzdata install ucf install util-linux install wise install xz-utils install zlib1g install 0m10.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'dpkg', '--get-selections', '*'] 0m10.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', '-ac'] 0m11.2s DUMP: debsums: no md5sums for mawk 0m11.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', '-ac'] 0m11.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m11.3s DUMP: 0.12~bpo70+1 0m11.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m11.3s INFO: Running adequate version 0.12~bpo70+1 now. 0m11.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'wise'] 0m11.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'wise'] 0m11.4s INFO: Running scripts pre_remove 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/pre_remove_exceptions'] 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/pre_remove_exceptions'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'apt-get', 'remove', 'libglib2.0-0', 'libpcre3', 'wise'] 0m12.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libglib2.0-0 libpcre3 wise 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. After this operation, 15.7 MB disk space will be freed. (Reading database ... 6328 files and directories currently installed.) Removing wise ... Removing libglib2.0-0 ... Removing libpcre3 ... 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'apt-get', 'remove', 'libglib2.0-0', 'libpcre3', 'wise'] 0m12.1s INFO: Running scripts post_remove 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/post_remove_exceptions_lenny'] 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/post_remove_exceptions_lenny'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/post_remove_extras'] 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/post_remove_extras'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'dpkg', '--purge', 'libglib2.0-0', 'libpcre3'] 0m12.1s DUMP: (Reading database ... 6262 files and directories currently installed.) Removing libglib2.0-0 ... Purging configuration files for libglib2.0-0 ... Removing libpcre3 ... Purging configuration files for libpcre3 ... 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'dpkg', '--purge', 'libglib2.0-0', 'libpcre3'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'dpkg', '--purge', 'wise'] 0m12.1s DUMP: dpkg: warning: ignoring request to remove wise which isn't installed. 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'dpkg', '--purge', 'wise'] 0m12.1s INFO: Running scripts post_purge 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/post_purge_exceptions'] 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'tmp/scripts/post_purge_exceptions'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'dpkg', '--purge', '--pending'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'dpkg', '--purge', '--pending'] 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'dpkg', '--remove', '--pending'] 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'dpkg', '--remove', '--pending'] 0m12.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvwfKdz'] 0m12.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvwfKdz'] 0m13.2s DEBUG: No broken symlinks as far as we can find. 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'dpkg-divert', '--list'] 0m13.2s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'dpkg-divert', '--list'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'apt-get', 'clean'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'apt-get', 'clean'] 0m14.2s INFO: PASS: Installation and purging test. 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'umount', '/proc'] 0m14.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvwfKdz', 'umount', '/proc'] 0m14.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpvwfKdz'] 0m14.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpvwfKdz'] 0m14.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpvwfKdz 0m14.5s INFO: PASS: All tests. 0m14.5s INFO: piuparts run ends. ret=0 End: 2014-09-12 02:14:04 UTC