Start: 2018-02-26 20:46:59 UTC [squeeze] Package: emboss-explorer Priority: optional Section: science Installed-Size: 328 Maintainer: Debian-Med Packaging Team Architecture: all Version: 2.2.0-7 Depends: perl (>= 5.6.0-16), libmailtools-perl, libemboss-acd-perl, emboss (>= 5.0.0), emboss-data, apache2 | httpd-cgi Recommends: emboss-doc Filename: pool/main/e/emboss-explorer/emboss-explorer_2.2.0-7_all.deb Size: 45798 MD5sum: 285049d21f332ad99d41eef5d6ea1399 SHA1: 56138d2565b16fcab7ced6c3260eb6ec42e64af6 SHA256: ee1cf62ddc88e926021a66e2ffef0a005dea8a492665f7093150083dba6a21fe Description: web-based GUI to EMBOSS EMBOSS explorer is a web-based graphical user interface to the EMBOSS suite of bioinformatics tools. It is written in Perl. . If you use the Apache HTTP server, you will at most have to restart it before using EMBOSS explorer. For other web servers, you will have to do the configuration by yourself. Homepage: http://embossgui.sourceforge.net/ Tag: biology::emboss, field::biology, field::biology:bioinformatics, implemented-in::perl, interface::web, role::plugin, web::application, web::cgi [wheezy-lts] Package: emboss-explorer Version: 2.2.0-7+deb7u1 Installed-Size: 240 Maintainer: Debian-Med Packaging Team Architecture: all Depends: perl, libmailtools-perl, libemboss-acd-perl, emboss (>= 5.0.0), emboss-data, apache2 | httpd-cgi Recommends: emboss-doc Description: web-based GUI to EMBOSS Homepage: http://embossgui.sourceforge.net/ Description-md5: 69ac8116a4fb61d1250e6572c9186bdf Tag: biology::emboss, field::biology, field::biology:bioinformatics, implemented-in::perl, interface::web, role::plugin, suite::TODO, web::application, web::cgi Section: science Priority: optional Filename: pool/main/e/emboss-explorer/emboss-explorer_2.2.0-7+deb7u1_all.deb Size: 46616 MD5sum: 59aa1b3b5ca22396eea96b1de1ff0be2 SHA1: adc723fe2360c01e492392700d98fbe6a9e487e5 SHA256: 7c185788640dfd700e8fcaca40d07ce2e84375c75a8c465be3ee4bc2e792fc81 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --no-check-valid-until --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze -d wheezy-lts -B reference-chroot-metadata.dat --apt emboss-explorer=2.2.0-7+deb7u1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.84~201801121524~0.83-4-g6e16ed9a starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --no-check-valid-until --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze -d wheezy-lts -B reference-chroot-metadata.dat --apt emboss-explorer=2.2.0-7+deb7u1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.9.0-6-amd64 #1 SMP Debian 4.9.82-1+deb9u2 (2018-02-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp18Ndpf 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp18Ndpf 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m2.1s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp18Ndpf/proc'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp18Ndpf/proc'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp18Ndpf/dev/pts'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp18Ndpf/dev/pts'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp18Ndpf/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp18Ndpf/dev/ptmx'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp18Ndpf/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp18Ndpf/dev/ptmx'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp18Ndpf/dev/console'] 0m2.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp18Ndpf/dev/console'] 0m2.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp18Ndpf/dev/shm'] 0m2.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp18Ndpf/dev/shm'] 0m2.2s DEBUG: sources.list: deb http://archive.debian.org/debian squeeze main 0m2.2s DEBUG: Created policy-rc.d and chmodded it. 0m2.2s DEBUG: Created resolv.conf. 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp18Ndpf/tmp/scripts/ 0m2.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts-wheezy to /srv/piuparts.debian.org/tmp/tmp18Ndpf/tmp/scripts/ 0m2.2s INFO: Running scripts post_chroot_unpack 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-get', 'update'] 0m2.2s DUMP: Hit http://archive.debian.org squeeze Release.gpg Ign http://archive.debian.org/debian/ squeeze/main Translation-en Hit http://archive.debian.org squeeze Release Hit http://archive.debian.org squeeze/main amd64 Packages Reading package lists... 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-get', 'update'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-get', '-yf', 'dist-upgrade'] 0m2.5s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-get', '-yf', 'dist-upgrade'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s DUMP: 6a0e4d3b374fdc6be02fc5f39fbf3166 - 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.6s INFO: Running scripts post_setup 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_setup_dummy_users'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_setup_dummy_users'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_setup_forbid_home'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_setup_forbid_home'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_setup_minimize'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_setup_minimize'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m3.8s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 320 kB of archives. After this operation, 1532 kB of additional disk space will be used. Get:1 http://archive.debian.org/debian/ squeeze/main adduser all 3.112+nmu2 [250 kB] Get:2 http://archive.debian.org/debian/ squeeze/main ucf all 3.0025+nmu1 [69.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 320 kB in 0s (23.0 MB/s) Selecting previously deselected package adduser. (Reading database ... 6138 files and directories currently installed.) Unpacking adduser (from .../adduser_3.112+nmu2_all.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu1_all.deb) ... Moving old data out of the way Setting up adduser (3.112+nmu2) ... Setting up ucf (3.0025+nmu1) ... 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_setup_zz_backports'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_setup_zz_backports'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.9s DUMP: install ok installed adduser 3.112+nmu2 install ok installed apt 0.8.10.3+squeeze1 install ok installed base-files 6.0squeeze10 install ok installed base-passwd 3.5.22 install ok installed bash 4.1-3 install ok installed bsdutils 1:2.17.2-9 install ok installed coreutils 8.5-1 install ok installed dash 0.5.5.1-7.4 install ok installed debconf 1.5.36.1 install ok installed debconf-i18n 1.5.36.1 install ok installed debian-archive-keyring 2010.08.28+squeeze1 install ok installed debianutils 3.4 install ok installed diffutils 1:3.0-1 install ok installed dpkg 1.15.11 install ok installed e2fslibs 1.41.12-4stable1 install ok installed e2fsprogs 1.41.12-4stable1 install ok installed findutils 4.4.2-1+b1 install ok installed gcc-4.4-base 4.4.5-8 install ok installed gnupg 1.4.10-4+squeeze4 install ok installed gpgv 1.4.10-4+squeeze4 install ok installed grep 2.6.3-3+squeeze1 install ok installed gzip 1.3.12-9+squeeze1 install ok installed hostname 3.04 install ok installed initscripts 2.88dsf-13.1+squeeze1 install ok installed insserv 1.14.0-2 install ok installed libacl1 2.2.49-4 install ok installed libattr1 1:2.4.44-2 install ok installed libblkid1 2.17.2-9 install ok installed libbz2-1.0 1.0.5-6+squeeze1 install ok installed libc-bin 2.11.3-4 install ok installed libc6 2.11.3-4 install ok installed libcomerr2 1.41.12-4stable1 install ok installed libdb4.8 4.8.30-2 install ok installed libgcc1 1:4.4.5-8 install ok installed liblocale-gettext-perl 1.05-6 install ok installed liblzma2 5.0.0-2 install ok installed libncurses5 5.7+20100313-5 install ok installed libpam-modules 1.1.1-6.1+squeeze1 install ok installed libpam-runtime 1.1.1-6.1+squeeze1 install ok installed libpam0g 1.1.1-6.1+squeeze1 install ok installed libreadline6 6.1-3 install ok installed libselinux1 2.0.96-1 install ok installed libsepol1 2.0.41-1 install ok installed libslang2 2.2.2-4 install ok installed libss2 1.41.12-4stable1 install ok installed libstdc++6 4.4.5-8 install ok installed libtext-charwidth-perl 0.04-6 install ok installed libtext-iconv-perl 1.7-2 install ok installed libtext-wrapi18n-perl 0.06-7 install ok installed libusb-0.1-4 2:0.1.12-16 install ok installed libuuid1 2.17.2-9 install ok installed login 1:4.1.4.2+svn3283-2+squeeze1 install ok installed lsb-base 3.2-23.2squeeze1 install ok installed mawk 1.3.3-15 install ok installed mount 2.17.2-9 install ok installed ncurses-base 5.7+20100313-5 install ok installed ncurses-bin 5.7+20100313-5 install ok installed passwd 1:4.1.4.2+svn3283-2+squeeze1 install ok installed perl-base 5.10.1-17squeeze6 install ok installed readline-common 6.1-3 install ok installed sed 4.2.1-7 install ok installed sensible-utils 0.0.4 install ok installed sysv-rc 2.88dsf-13.1+squeeze1 install ok installed sysvinit 2.88dsf-13.1+squeeze1 install ok installed sysvinit-utils 2.88dsf-13.1+squeeze1 install ok installed tar 1.23-3 install ok installed tzdata 2014e-0squeeze1 install ok installed ucf 3.0025+nmu1 install ok installed util-linux 2.17.2-9 install ok installed xz-utils 5.0.0-2 install ok installed zlib1g 1:1.2.3.4.dfsg-3 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.9s DEBUG: Loading chroot meta data from reference-chroot-metadata.dat 0m4.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp18Ndpf'] 0m4.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp18Ndpf'] 0m4.6s INFO: Running scripts is_testable 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/is_testable_uninstallable'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/is_testable_uninstallable'] 0m4.7s INFO: Running scripts pre_test 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_test_exceptions'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_test_exceptions'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_test_root_password'] 0m4.7s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_test_root_password'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-cache', 'show', 'emboss-explorer'] 0m4.7s DUMP: Package: emboss-explorer Priority: optional Section: science Installed-Size: 328 Maintainer: Debian-Med Packaging Team Architecture: all Version: 2.2.0-7 Depends: perl (>= 5.6.0-16), libmailtools-perl, libemboss-acd-perl, emboss (>= 5.0.0), emboss-data, apache2 | httpd-cgi Recommends: emboss-doc Filename: pool/main/e/emboss-explorer/emboss-explorer_2.2.0-7_all.deb Size: 45798 MD5sum: 285049d21f332ad99d41eef5d6ea1399 SHA1: 56138d2565b16fcab7ced6c3260eb6ec42e64af6 SHA256: ee1cf62ddc88e926021a66e2ffef0a005dea8a492665f7093150083dba6a21fe Description: web-based GUI to EMBOSS EMBOSS explorer is a web-based graphical user interface to the EMBOSS suite of bioinformatics tools. It is written in Perl. . If you use the Apache HTTP server, you will at most have to restart it before using EMBOSS explorer. For other web servers, you will have to do the configuration by yourself. Homepage: http://embossgui.sourceforge.net/ Tag: biology::emboss, field::biology, field::biology:bioinformatics, implemented-in::perl, interface::web, role::plugin, web::application, web::cgi 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-cache', 'show', 'emboss-explorer'] 0m4.7s INFO: apt-cache knows about the following packages: emboss-explorer 0m4.7s INFO: Running scripts pre_install 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_database-server'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_database-server'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_exceptions'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_exceptions'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_extras'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_extras'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-cache', 'policy'] 0m4.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://archive.debian.org/debian/ squeeze/main amd64 Packages release v=6.0.10,o=Debian,a=oldoldstable,n=squeeze,l=Debian,c=main origin archive.debian.org Pinned packages: 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-cache', 'policy'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-cache', 'policy', 'emboss-explorer'] 0m4.8s DUMP: emboss-explorer: Installed: (none) Candidate: 2.2.0-7 Version table: 2.2.0-7 0 500 http://archive.debian.org/debian/ squeeze/main amd64 Packages 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-cache', 'policy', 'emboss-explorer'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-get', '-y', 'install', 'emboss-explorer'] 0m9.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: apache2 apache2-mpm-worker apache2-utils apache2.2-bin apache2.2-common csh emboss emboss-data emboss-lib libajax6 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libcap2 libdb4.7 libemboss-acd-perl libexpat1 libfreetype6 libgcrypt11 libgd2-noxpm libgdbm3 libgnutls26 libgpg-error0 libjpeg62 libldap-2.4-2 libmagic1 libmailtools-perl libncursesw5 libnucleus6 libparse-recdescent-perl libpcre3 libpng12-0 libsasl2-2 libsqlite3-0 libssl0.9.8 libtasn1-3 libtimedate-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 mime-support perl perl-modules procps Suggested packages: www-browser apache2-doc apache2-suexec apache2-suexec-custom emboss-doc emboss-test embassy clustalw rng-tools libgd-tools gnutls-bin file perl-doc libterm-readline-gnu-perl libterm-readline-perl-perl make Recommended packages: ssl-cert primer3 dialign libgpm2 libsasl2-modules netbase psmisc The following NEW packages will be installed: apache2 apache2-mpm-worker apache2-utils apache2.2-bin apache2.2-common csh emboss emboss-data emboss-explorer emboss-lib libajax6 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libcap2 libdb4.7 libemboss-acd-perl libexpat1 libfreetype6 libgcrypt11 libgd2-noxpm libgdbm3 libgnutls26 libgpg-error0 libjpeg62 libldap-2.4-2 libmagic1 libmailtools-perl libncursesw5 libnucleus6 libparse-recdescent-perl libpcre3 libpng12-0 libsasl2-2 libsqlite3-0 libssl0.9.8 libtasn1-3 libtimedate-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 mime-support perl perl-modules procps 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 20.7 MB of archives. After this operation, 75.3 MB of additional disk space will be used. Get:1 http://archive.debian.org/debian/ squeeze/main libgdbm3 amd64 1.8.3-9 [46.2 kB] Get:2 http://archive.debian.org/debian/ squeeze/main libncursesw5 amd64 5.7+20100313-5 [390 kB] Get:3 http://archive.debian.org/debian/ squeeze/main libssl0.9.8 amd64 0.9.8o-4squeeze14 [1002 kB] Get:4 http://archive.debian.org/debian/ squeeze/main procps amd64 1:3.2.8-9squeeze1 [249 kB] Get:5 http://archive.debian.org/debian/ squeeze/main libcap2 amd64 1:2.19-3 [12.6 kB] Get:6 http://archive.debian.org/debian/ squeeze/main libdb4.7 amd64 4.7.25-9 [662 kB] Get:7 http://archive.debian.org/debian/ squeeze/main libgpg-error0 amd64 1.6-1 [43.9 kB] Get:8 http://archive.debian.org/debian/ squeeze/main libgcrypt11 amd64 1.4.5-2+squeeze1 [282 kB] Get:9 http://archive.debian.org/debian/ squeeze/main libtasn1-3 amd64 2.7-1+squeeze+1 [63.1 kB] Get:10 http://archive.debian.org/debian/ squeeze/main libgnutls26 amd64 2.8.6-1+squeeze3 [564 kB] Get:11 http://archive.debian.org/debian/ squeeze/main libsasl2-2 amd64 2.1.23.dfsg1-7 [115 kB] Get:12 http://archive.debian.org/debian/ squeeze/main libldap-2.4-2 amd64 2.4.23-7.3 [211 kB] Get:13 http://archive.debian.org/debian/ squeeze/main libmagic1 amd64 5.04-5+squeeze5 [236 kB] Get:14 http://archive.debian.org/debian/ squeeze/main libpcre3 amd64 8.02-1.1 [234 kB] Get:15 http://archive.debian.org/debian/ squeeze/main libsqlite3-0 amd64 3.7.3-1 [397 kB] Get:16 http://archive.debian.org/debian/ squeeze/main mime-support all 3.48-1 [34.2 kB] Get:17 http://archive.debian.org/debian/ squeeze/main perl-modules all 5.10.1-17squeeze6 [3482 kB] Get:18 http://archive.debian.org/debian/ squeeze/main perl amd64 5.10.1-17squeeze6 [4462 kB] Get:19 http://archive.debian.org/debian/ squeeze/main libapr1 amd64 1.4.2-6+squeeze4 [94.1 kB] Get:20 http://archive.debian.org/debian/ squeeze/main libexpat1 amd64 2.0.1-7+squeeze1 [138 kB] Get:21 http://archive.debian.org/debian/ squeeze/main libaprutil1 amd64 1.3.9+dfsg-5 [92.3 kB] Get:22 http://archive.debian.org/debian/ squeeze/main libaprutil1-dbd-sqlite3 amd64 1.3.9+dfsg-5 [28.1 kB] Get:23 http://archive.debian.org/debian/ squeeze/main libaprutil1-ldap amd64 1.3.9+dfsg-5 [25.7 kB] Get:24 http://archive.debian.org/debian/ squeeze/main apache2.2-bin amd64 2.2.16-6+squeeze12 [1436 kB] Get:25 http://archive.debian.org/debian/ squeeze/main apache2-utils amd64 2.2.16-6+squeeze12 [167 kB] Get:26 http://archive.debian.org/debian/ squeeze/main apache2.2-common amd64 2.2.16-6+squeeze12 [302 kB] Get:27 http://archive.debian.org/debian/ squeeze/main apache2-mpm-worker amd64 2.2.16-6+squeeze12 [2234 B] Get:28 http://archive.debian.org/debian/ squeeze/main apache2 amd64 2.2.16-6+squeeze12 [1394 B] Get:29 http://archive.debian.org/debian/ squeeze/main csh amd64 20070713-2 [257 kB] Get:30 http://archive.debian.org/debian/ squeeze/main emboss-lib amd64 6.1.0-5 [449 kB] Get:31 http://archive.debian.org/debian/ squeeze/main libajax6 amd64 6.1.0-5 [875 kB] Get:32 http://archive.debian.org/debian/ squeeze/main libfreetype6 amd64 2.4.2-2.1+squeeze4 [377 kB] Get:33 http://archive.debian.org/debian/ squeeze/main libjpeg62 amd64 6b1-1 [94.0 kB] Get:34 http://archive.debian.org/debian/ squeeze/main libpng12-0 amd64 1.2.44-1+squeeze4 [180 kB] Get:35 http://archive.debian.org/debian/ squeeze/main libgd2-noxpm amd64 2.0.36~rc1~dfsg-5 [229 kB] Get:36 http://archive.debian.org/debian/ squeeze/main libnucleus6 amd64 6.1.0-5 [211 kB] Get:37 http://archive.debian.org/debian/ squeeze/main libxau6 amd64 1:1.0.6-1 [16.8 kB] Get:38 http://archive.debian.org/debian/ squeeze/main libxdmcp6 amd64 1:1.0.3-2 [19.3 kB] Get:39 http://archive.debian.org/debian/ squeeze/main libxcb1 amd64 1.6-1+squeeze1 [44.3 kB] Get:40 http://archive.debian.org/debian/ squeeze/main libx11-data all 2:1.3.3-4+squeeze1 [184 kB] Get:41 http://archive.debian.org/debian/ squeeze/main libx11-6 amd64 2:1.3.3-4+squeeze1 [847 kB] Get:42 http://archive.debian.org/debian/ squeeze/main emboss-data all 6.1.0-5 [834 kB] Get:43 http://archive.debian.org/debian/ squeeze/main emboss amd64 6.1.0-5 [932 kB] Get:44 http://archive.debian.org/debian/ squeeze/main libtimedate-perl all 1.2000-1 [41.2 kB] Get:45 http://archive.debian.org/debian/ squeeze/main libmailtools-perl all 2.06-1 [97.4 kB] Get:46 http://archive.debian.org/debian/ squeeze/main libparse-recdescent-perl all 1.965001+dfsg-1 [157 kB] Get:47 http://archive.debian.org/debian/ squeeze/main libemboss-acd-perl all 2.2.0-7 [10.5 kB] Get:48 http://archive.debian.org/debian/ squeeze/main emboss-explorer all 2.2.0-7 [45.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.7 MB in 0s (44.9 MB/s) Selecting previously deselected package libgdbm3. (Reading database ... 6261 files and directories currently installed.) Unpacking libgdbm3 (from .../libgdbm3_1.8.3-9_amd64.deb) ... Selecting previously deselected package libncursesw5. Unpacking libncursesw5 (from .../libncursesw5_5.7+20100313-5_amd64.deb) ... Selecting previously deselected package libssl0.9.8. Unpacking libssl0.9.8 (from .../libssl0.9.8_0.9.8o-4squeeze14_amd64.deb) ... Selecting previously deselected package procps. Unpacking procps (from .../procps_1%3a3.2.8-9squeeze1_amd64.deb) ... Selecting previously deselected package libcap2. Unpacking libcap2 (from .../libcap2_1%3a2.19-3_amd64.deb) ... Selecting previously deselected package libdb4.7. Unpacking libdb4.7 (from .../libdb4.7_4.7.25-9_amd64.deb) ... Selecting previously deselected package libgpg-error0. Unpacking libgpg-error0 (from .../libgpg-error0_1.6-1_amd64.deb) ... Selecting previously deselected package libgcrypt11. Unpacking libgcrypt11 (from .../libgcrypt11_1.4.5-2+squeeze1_amd64.deb) ... Selecting previously deselected package libtasn1-3. Unpacking libtasn1-3 (from .../libtasn1-3_2.7-1+squeeze+1_amd64.deb) ... Selecting previously deselected package libgnutls26. Unpacking libgnutls26 (from .../libgnutls26_2.8.6-1+squeeze3_amd64.deb) ... Selecting previously deselected package libsasl2-2. Unpacking libsasl2-2 (from .../libsasl2-2_2.1.23.dfsg1-7_amd64.deb) ... Selecting previously deselected package libldap-2.4-2. Unpacking libldap-2.4-2 (from .../libldap-2.4-2_2.4.23-7.3_amd64.deb) ... Selecting previously deselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.04-5+squeeze5_amd64.deb) ... Selecting previously deselected package libpcre3. Unpacking libpcre3 (from .../libpcre3_8.02-1.1_amd64.deb) ... Selecting previously deselected package libsqlite3-0. Unpacking libsqlite3-0 (from .../libsqlite3-0_3.7.3-1_amd64.deb) ... Selecting previously deselected package mime-support. Unpacking mime-support (from .../mime-support_3.48-1_all.deb) ... Selecting previously deselected package perl-modules. Unpacking perl-modules (from .../perl-modules_5.10.1-17squeeze6_all.deb) ... Selecting previously deselected package perl. Unpacking perl (from .../perl_5.10.1-17squeeze6_amd64.deb) ... Selecting previously deselected package libapr1. Unpacking libapr1 (from .../libapr1_1.4.2-6+squeeze4_amd64.deb) ... Selecting previously deselected package libexpat1. Unpacking libexpat1 (from .../libexpat1_2.0.1-7+squeeze1_amd64.deb) ... Selecting previously deselected package libaprutil1. Unpacking libaprutil1 (from .../libaprutil1_1.3.9+dfsg-5_amd64.deb) ... Selecting previously deselected package libaprutil1-dbd-sqlite3. Unpacking libaprutil1-dbd-sqlite3 (from .../libaprutil1-dbd-sqlite3_1.3.9+dfsg-5_amd64.deb) ... Selecting previously deselected package libaprutil1-ldap. Unpacking libaprutil1-ldap (from .../libaprutil1-ldap_1.3.9+dfsg-5_amd64.deb) ... Selecting previously deselected package apache2.2-bin. Unpacking apache2.2-bin (from .../apache2.2-bin_2.2.16-6+squeeze12_amd64.deb) ... Selecting previously deselected package apache2-utils. Unpacking apache2-utils (from .../apache2-utils_2.2.16-6+squeeze12_amd64.deb) ... Selecting previously deselected package apache2.2-common. Unpacking apache2.2-common (from .../apache2.2-common_2.2.16-6+squeeze12_amd64.deb) ... Selecting previously deselected package apache2-mpm-worker. Unpacking apache2-mpm-worker (from .../apache2-mpm-worker_2.2.16-6+squeeze12_amd64.deb) ... Selecting previously deselected package apache2. Unpacking apache2 (from .../apache2_2.2.16-6+squeeze12_amd64.deb) ... Selecting previously deselected package csh. Unpacking csh (from .../csh_20070713-2_amd64.deb) ... Selecting previously deselected package emboss-lib. Unpacking emboss-lib (from .../emboss-lib_6.1.0-5_amd64.deb) ... Selecting previously deselected package libajax6. Unpacking libajax6 (from .../libajax6_6.1.0-5_amd64.deb) ... Selecting previously deselected package libfreetype6. Unpacking libfreetype6 (from .../libfreetype6_2.4.2-2.1+squeeze4_amd64.deb) ... Selecting previously deselected package libjpeg62. Unpacking libjpeg62 (from .../libjpeg62_6b1-1_amd64.deb) ... Selecting previously deselected package libpng12-0. Unpacking libpng12-0 (from .../libpng12-0_1.2.44-1+squeeze4_amd64.deb) ... Selecting previously deselected package libgd2-noxpm. Unpacking libgd2-noxpm (from .../libgd2-noxpm_2.0.36~rc1~dfsg-5_amd64.deb) ... Selecting previously deselected package libnucleus6. Unpacking libnucleus6 (from .../libnucleus6_6.1.0-5_amd64.deb) ... Selecting previously deselected package libxau6. Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_amd64.deb) ... Selecting previously deselected package libxdmcp6. Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.0.3-2_amd64.deb) ... Selecting previously deselected package libxcb1. Unpacking libxcb1 (from .../libxcb1_1.6-1+squeeze1_amd64.deb) ... Selecting previously deselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.3.3-4+squeeze1_all.deb) ... Selecting previously deselected package libx11-6. Unpacking libx11-6 (from .../libx11-6_2%3a1.3.3-4+squeeze1_amd64.deb) ... Selecting previously deselected package emboss-data. Unpacking emboss-data (from .../emboss-data_6.1.0-5_all.deb) ... Selecting previously deselected package emboss. Unpacking emboss (from .../emboss_6.1.0-5_amd64.deb) ... Selecting previously deselected package libtimedate-perl. Unpacking libtimedate-perl (from .../libtimedate-perl_1.2000-1_all.deb) ... Selecting previously deselected package libmailtools-perl. Unpacking libmailtools-perl (from .../libmailtools-perl_2.06-1_all.deb) ... Selecting previously deselected package libparse-recdescent-perl. Unpacking libparse-recdescent-perl (from .../libparse-recdescent-perl_1.965001+dfsg-1_all.deb) ... Selecting previously deselected package libemboss-acd-perl. Unpacking libemboss-acd-perl (from .../libemboss-acd-perl_2.2.0-7_all.deb) ... Selecting previously deselected package emboss-explorer. Unpacking emboss-explorer (from .../emboss-explorer_2.2.0-7_all.deb) ... Setting up libgdbm3 (1.8.3-9) ... Setting up libncursesw5 (5.7+20100313-5) ... Setting up libssl0.9.8 (0.9.8o-4squeeze14) ... Setting up procps (1:3.2.8-9squeeze1) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode. invoke-rc.d: policy-rc.d denied execution of start. Setting up libcap2 (1:2.19-3) ... Setting up libdb4.7 (4.7.25-9) ... Setting up libgpg-error0 (1.6-1) ... Setting up libgcrypt11 (1.4.5-2+squeeze1) ... Setting up libtasn1-3 (2.7-1+squeeze+1) ... Setting up libgnutls26 (2.8.6-1+squeeze3) ... Setting up libsasl2-2 (2.1.23.dfsg1-7) ... Setting up libldap-2.4-2 (2.4.23-7.3) ... Setting up libmagic1 (5.04-5+squeeze5) ... Setting up libpcre3 (8.02-1.1) ... Setting up libsqlite3-0 (3.7.3-1) ... Setting up mime-support (3.48-1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up libapr1 (1.4.2-6+squeeze4) ... Setting up libexpat1 (2.0.1-7+squeeze1) ... Setting up libaprutil1 (1.3.9+dfsg-5) ... Setting up libaprutil1-dbd-sqlite3 (1.3.9+dfsg-5) ... Setting up libaprutil1-ldap (1.3.9+dfsg-5) ... Setting up apache2.2-bin (2.2.16-6+squeeze12) ... Setting up apache2-utils (2.2.16-6+squeeze12) ... Setting up csh (20070713-2) ... update-alternatives: using /bin/bsd-csh to provide /bin/csh (csh) in auto mode. Setting up emboss-lib (6.1.0-5) ... Setting up libajax6 (6.1.0-5) ... Setting up libfreetype6 (2.4.2-2.1+squeeze4) ... Setting up libjpeg62 (6b1-1) ... Setting up libpng12-0 (1.2.44-1+squeeze4) ... Setting up libgd2-noxpm (2.0.36~rc1~dfsg-5) ... Setting up libnucleus6 (6.1.0-5) ... Setting up libxau6 (1:1.0.6-1) ... Setting up libxdmcp6 (1:1.0.3-2) ... Setting up libxcb1 (1.6-1+squeeze1) ... Setting up libx11-data (2:1.3.3-4+squeeze1) ... Setting up libx11-6 (2:1.3.3-4+squeeze1) ... Setting up emboss-data (6.1.0-5) ... Setting up emboss (6.1.0-5) ... Setting up perl-modules (5.10.1-17squeeze6) ... Setting up perl (5.10.1-17squeeze6) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode. Setting up apache2.2-common (2.2.16-6+squeeze12) ... Enabling site default. Enabling module alias. Enabling module autoindex. Enabling module dir. Enabling module env. Enabling module mime. Enabling module negotiation. Enabling module setenvif. Enabling module status. Enabling module auth_basic. Enabling module deflate. Enabling module authz_default. Enabling module authz_user. Enabling module authz_groupfile. Enabling module authn_file. Enabling module authz_host. Enabling module reqtimeout. Setting up apache2-mpm-worker (2.2.16-6+squeeze12) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up apache2 (2.2.16-6+squeeze12) ... Setting up libtimedate-perl (1.2000-1) ... Setting up libmailtools-perl (2.06-1) ... Setting up libparse-recdescent-perl (1.965001+dfsg-1) ... Setting up libemboss-acd-perl (2.2.0-7) ... Setting up emboss-explorer (2.2.0-7) ... invoke-rc.d: policy-rc.d denied execution of reload. 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-get', '-y', 'install', 'emboss-explorer'] 0m9.2s INFO: Running scripts post_install 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_install_exceptions'] 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_install_exceptions'] 0m9.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp18Ndpf'] 0m9.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp18Ndpf'] 0m9.9s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp18Ndpf to wheezy-lts 0m9.9s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ wheezy main deb http://security.debian.org wheezy/updates main 0m9.9s INFO: Running scripts pre_distupgrade 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_distupgrade_wheezy'] 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_distupgrade_wheezy'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-get', 'update'] 0m11.6s DUMP: Get:1 http://mirror-ubc.debian.org wheezy Release.gpg [2373 B] Ign http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en Get:2 http://mirror-ubc.debian.org wheezy Release [191 kB] Get:3 http://mirror-ubc.debian.org wheezy/main amd64 Packages [7634 kB] Get:4 http://security.debian.org wheezy/updates Release.gpg [1601 B] Ign http://security.debian.org/ wheezy/updates/main Translation-en Get:5 http://security.debian.org wheezy/updates Release [39.0 kB] Get:6 http://security.debian.org wheezy/updates/main amd64 Packages [775 kB] Fetched 8643 kB in 1s (8496 kB/s) Reading package lists... W: There is no public key available for the following key IDs: 7638D0442B90D010 W: There is no public key available for the following key IDs: 9D6D8F6BC857C906 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-get', 'update'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-get', '-yf', 'dist-upgrade'] 0m44.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libajax6 libnucleus6 The following NEW packages will be installed: gcc-4.7-base libapt-pkg4.12 libbsd0 libclass-isa-perl libdb5.1 libgssapi-krb5-2 libhpdf-2.2.1 libjpeg8 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblzma5 libmount1 libmysqlclient18 libp11-kit0 libpam-modules-bin libpq5 libprocps0 libsemanage-common libsemanage1 libssl1.0.0 libswitch-perl libtinfo5 libustr-1.0-1 multiarch-support mysql-common The following packages will be upgraded: adduser apache2 apache2-mpm-worker apache2-utils apache2.2-bin apache2.2-common apt base-files base-passwd bash bsdutils coreutils csh dash debconf debconf-i18n debian-archive-keyring debianutils diffutils dpkg e2fslibs e2fsprogs emboss emboss-data emboss-explorer emboss-lib findutils gcc-4.4-base gnupg gpgv grep gzip hostname initscripts insserv libacl1 libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libattr1 libblkid1 libbz2-1.0 libc-bin libc6 libcap2 libcomerr2 libemboss-acd-perl libexpat1 libfreetype6 libgcc1 libgcrypt11 libgd2-noxpm libgdbm3 libgnutls26 libgpg-error0 libjpeg62 libldap-2.4-2 liblocale-gettext-perl libmagic1 libmailtools-perl libncurses5 libncursesw5 libpam-modules libpam-runtime libpam0g libparse-recdescent-perl libpcre3 libpng12-0 libreadline6 libsasl2-2 libselinux1 libsepol1 libslang2 libsqlite3-0 libss2 libstdc++6 libtasn1-3 libtext-charwidth-perl libtext-iconv-perl libusb-0.1-4 libuuid1 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 login lsb-base mawk mime-support mount ncurses-base ncurses-bin passwd perl perl-base perl-modules procps readline-common sed sensible-utils sysv-rc sysvinit sysvinit-utils tar tzdata ucf util-linux xz-utils zlib1g 111 upgraded, 27 newly installed, 2 to remove and 0 not upgraded. Need to get 97.8 MB of archives. After this operation, 322 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main emboss amd64 6.4.0-2 [1009 kB] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main gcc-4.7-base amd64 4.7.2-5 [144 kB] Get:3 http://mirror-ubc.debian.org/debian/ wheezy/main libgcc1 amd64 1:4.7.2-5 [43.1 kB] Get:4 http://mirror-ubc.debian.org/debian/ wheezy/main zlib1g amd64 1:1.2.7.dfsg-13 [87.4 kB] Get:5 http://security.debian.org/ wheezy/updates/main libc-bin amd64 2.13-38+deb7u12 [1275 kB] Get:6 http://mirror-ubc.debian.org/debian/ wheezy/main libjpeg8 amd64 8d-1+deb7u1 [138 kB] Get:7 http://mirror-ubc.debian.org/debian/ wheezy/main libpng12-0 amd64 1.2.49-1+deb7u2 [191 kB] Get:8 http://mirror-ubc.debian.org/debian/ wheezy/main libhpdf-2.2.1 amd64 2.2.1-1 [504 kB] Get:9 http://mirror-ubc.debian.org/debian/ wheezy/main libstdc++6 amd64 4.7.2-5 [332 kB] Get:10 http://mirror-ubc.debian.org/debian/ wheezy/main libcomerr2 amd64 1.42.5-1.1+deb7u1 [56.1 kB] Get:11 http://mirror-ubc.debian.org/debian/ wheezy/main libkeyutils1 amd64 1.5.5-3+deb7u1 [8664 B] Get:12 http://mirror-ubc.debian.org/debian/ wheezy/main libp11-kit0 amd64 0.12-3 [52.8 kB] Get:13 http://mirror-ubc.debian.org/debian/ wheezy/main libgnutls26 amd64 2.12.20-8+deb7u5 [620 kB] Get:14 http://mirror-ubc.debian.org/debian/ wheezy/main libgpg-error0 amd64 1.10-3.1 [77.9 kB] Get:15 http://mirror-ubc.debian.org/debian/ wheezy/main libsasl2-2 amd64 2.1.25.dfsg1-6+deb7u1 [120 kB] Get:16 http://mirror-ubc.debian.org/debian/ wheezy/main debconf all 1.5.49 [171 kB] Get:17 http://mirror-ubc.debian.org/debian/ wheezy/main emboss-lib amd64 6.4.0-2 [2823 kB] Get:18 http://mirror-ubc.debian.org/debian/ wheezy/main libxau6 amd64 1:1.0.7-1 [18.8 kB] Get:19 http://mirror-ubc.debian.org/debian/ wheezy/main libxdmcp6 amd64 1:1.1.1-1 [26.3 kB] Get:20 http://mirror-ubc.debian.org/debian/ wheezy/main libxcb1 amd64 1.8.1-2+deb7u1 [50.2 kB] Get:21 http://mirror-ubc.debian.org/debian/ wheezy/main emboss-data all 6.4.0-2 [39.0 MB] Get:22 http://security.debian.org/ wheezy/updates/main libc6 amd64 2.13-38+deb7u12 [4226 kB] Get:23 http://security.debian.org/ wheezy/updates/main multiarch-support amd64 2.13-38+deb7u12 [152 kB] Get:24 http://security.debian.org/ wheezy/updates/main libexpat1 amd64 2.1.0-1+deb7u5 [139 kB] Get:25 http://security.debian.org/ wheezy/updates/main libfreetype6 amd64 2.4.9-1.1+deb7u7 [454 kB] Get:26 http://security.debian.org/ wheezy/updates/main libgd2-noxpm amd64 2.0.36~rc1~dfsg-6.1+deb7u11 [234 kB] Get:27 http://security.debian.org/ wheezy/updates/main mysql-common all 5.5.59-0+deb7u1 [79.9 kB] Get:28 http://security.debian.org/ wheezy/updates/main libmysqlclient18 amd64 5.5.59-0+deb7u1 [686 kB] Get:29 http://security.debian.org/ wheezy/updates/main libkrb5support0 amd64 1.10.1+dfsg-5+deb7u9 [50.7 kB] Get:30 http://security.debian.org/ wheezy/updates/main libk5crypto3 amd64 1.10.1+dfsg-5+deb7u9 [114 kB] Get:31 http://security.debian.org/ wheezy/updates/main libkrb5-3 amd64 1.10.1+dfsg-5+deb7u9 [394 kB] Get:32 http://security.debian.org/ wheezy/updates/main libgssapi-krb5-2 amd64 1.10.1+dfsg-5+deb7u9 [150 kB] Get:33 http://security.debian.org/ wheezy/updates/main libtasn1-3 amd64 2.13-2+deb7u5 [68.9 kB] Get:34 http://security.debian.org/ wheezy/updates/main libgcrypt11 amd64 1.5.0-5+deb7u6 [301 kB] Get:35 http://security.debian.org/ wheezy/updates/main libdb5.1 amd64 5.1.29-5+deb7u1 [723 kB] Get:36 http://security.debian.org/ wheezy/updates/main libldap-2.4-2 amd64 2.4.31-2+deb7u3 [244 kB] Get:37 http://security.debian.org/ wheezy/updates/main libssl1.0.0 amd64 1.0.1t-1+deb7u3 [1281 kB] Get:38 http://security.debian.org/ wheezy/updates/main libpq5 amd64 9.1.24lts2-0+deb7u2 [141 kB] Get:39 http://security.debian.org/ wheezy/updates/main libx11-6 amd64 2:1.5.0-1+deb7u4 [902 kB] Get:40 http://security.debian.org/ wheezy/updates/main libx11-data all 2:1.5.0-1+deb7u4 [189 kB] Get:41 http://security.debian.org/ wheezy/updates/main sensible-utils all 0.0.7+deb7u1 [9000 B] Get:42 http://security.debian.org/ wheezy/updates/main passwd amd64 1:4.1.5.1-1+deb7u1 [1262 kB] Get:43 http://security.debian.org/ wheezy/updates/main tzdata all 2018c-0+deb7u1 [496 kB] Get:44 http://security.debian.org/ wheezy/updates/main bash amd64 4.2+dfsg-0.1+deb7u4 [1499 kB] Get:45 http://security.debian.org/ wheezy/updates/main login amd64 1:4.1.5.1-1+deb7u1 [984 kB] Get:46 http://security.debian.org/ wheezy/updates/main perl-modules all 5.14.2-21+deb7u5 [3441 kB] Get:47 http://security.debian.org/ wheezy/updates/main perl amd64 5.14.2-21+deb7u5 [4434 kB] Get:48 http://security.debian.org/ wheezy/updates/main perl-base amd64 5.14.2-21+deb7u5 [1534 kB] Get:49 http://security.debian.org/ wheezy/updates/main tar amd64 1.26+dfsg-0.1+deb7u1 [984 kB] Get:50 http://security.debian.org/ wheezy/updates/main gpgv amd64 1.4.12-7+deb7u9 [229 kB] Get:51 http://security.debian.org/ wheezy/updates/main gnupg amd64 1.4.12-7+deb7u9 [1954 kB] Get:52 http://security.debian.org/ wheezy/updates/main libmagic1 amd64 5.11-2+deb7u9 [205 kB] Get:53 http://security.debian.org/ wheezy/updates/main libsqlite3-0 amd64 3.7.13-1+deb7u4 [454 kB] Get:54 http://security.debian.org/ wheezy/updates/main libaprutil1-ldap amd64 1.4.1-3+deb7u1 [16.8 kB] Get:55 http://security.debian.org/ wheezy/updates/main libaprutil1-dbd-sqlite3 amd64 1.4.1-3+deb7u1 [19.3 kB] Get:56 http://security.debian.org/ wheezy/updates/main libapr1 amd64 1.4.6-3+deb7u2 [106 kB] Get:57 http://security.debian.org/ wheezy/updates/main libaprutil1 amd64 1.4.1-3+deb7u1 [90.0 kB] Get:58 http://security.debian.org/ wheezy/updates/main apache2 amd64 2.2.22-13+deb7u12 [1446 B] Get:59 http://security.debian.org/ wheezy/updates/main apache2-mpm-worker amd64 2.2.22-13+deb7u12 [2226 B] Get:60 http://security.debian.org/ wheezy/updates/main apache2.2-common amd64 2.2.22-13+deb7u12 [294 kB] Get:61 http://security.debian.org/ wheezy/updates/main apache2.2-bin amd64 2.2.22-13+deb7u12 [793 kB] Get:62 http://security.debian.org/ wheezy/updates/main apache2-utils amd64 2.2.22-13+deb7u12 [164 kB] Get:63 http://mirror-ubc.debian.org/debian/ wheezy/main debianutils amd64 4.3.2 [78.9 kB] Get:64 http://mirror-ubc.debian.org/debian/ wheezy/main libsemanage-common all 2.1.6-6 [23.2 kB] Get:65 http://mirror-ubc.debian.org/debian/ wheezy/main libsepol1 amd64 2.1.4-3 [135 kB] Get:66 http://mirror-ubc.debian.org/debian/ wheezy/main libustr-1.0-1 amd64 1.0.4-3 [92.5 kB] Get:67 http://mirror-ubc.debian.org/debian/ wheezy/main libbz2-1.0 amd64 1.0.6-4 [46.5 kB] Get:68 http://mirror-ubc.debian.org/debian/ wheezy/main libselinux1 amd64 2.1.9-5 [90.6 kB] Get:69 http://mirror-ubc.debian.org/debian/ wheezy/main libsemanage1 amd64 2.1.6-6 [102 kB] Get:70 http://mirror-ubc.debian.org/debian/ wheezy/main libpam0g amd64 1.1.3-7.1 [128 kB] Get:71 http://mirror-ubc.debian.org/debian/ wheezy/main libpam-modules-bin amd64 1.1.3-7.1 [113 kB] Get:72 http://mirror-ubc.debian.org/debian/ wheezy/main libpam-modules amd64 1.1.3-7.1 [348 kB] Get:73 http://mirror-ubc.debian.org/debian/ wheezy/main libuuid1 amd64 2.20.1-5.3 [57.1 kB] Get:74 http://mirror-ubc.debian.org/debian/ wheezy/main libblkid1 amd64 2.20.1-5.3 [120 kB] Get:75 http://mirror-ubc.debian.org/debian/ wheezy/main libslang2 amd64 2.2.4-15 [551 kB] Get:76 http://mirror-ubc.debian.org/debian/ wheezy/main libtinfo5 amd64 5.9-10 [275 kB] Get:77 http://mirror-ubc.debian.org/debian/ wheezy/main lsb-base all 4.1+Debian8+deb7u1 [26.8 kB] Get:78 http://mirror-ubc.debian.org/debian/ wheezy/main liblzma5 amd64 5.1.1alpha+20120614-2 [202 kB] Get:79 http://mirror-ubc.debian.org/debian/ wheezy/main dpkg amd64 1.16.18 [2665 kB] Get:80 http://mirror-ubc.debian.org/debian/ wheezy/main util-linux amd64 2.20.1-5.3 [659 kB] Get:81 http://mirror-ubc.debian.org/debian/ wheezy/main insserv amd64 1.14.0-5 [64.8 kB] Get:82 http://mirror-ubc.debian.org/debian/ wheezy/main sysvinit-utils amd64 2.88dsf-41+deb7u1 [100 kB] Get:83 http://mirror-ubc.debian.org/debian/ wheezy/main sysv-rc all 2.88dsf-41+deb7u1 [81.8 kB] Get:84 http://mirror-ubc.debian.org/debian/ wheezy/main libmount1 amd64 2.20.1-5.3 [120 kB] Get:85 http://mirror-ubc.debian.org/debian/ wheezy/main mount amd64 2.20.1-5.3 [213 kB] Get:86 http://mirror-ubc.debian.org/debian/ wheezy/main libattr1 amd64 1:2.4.46-8 [19.8 kB] Get:87 http://mirror-ubc.debian.org/debian/ wheezy/main libacl1 amd64 2.2.51-8 [30.1 kB] Get:88 http://mirror-ubc.debian.org/debian/ wheezy/main coreutils amd64 8.13-3.5 [5628 kB] Get:89 http://mirror-ubc.debian.org/debian/ wheezy/main initscripts amd64 2.88dsf-41+deb7u1 [91.8 kB] Get:90 http://mirror-ubc.debian.org/debian/ wheezy/main base-files amd64 7.1wheezy11 [67.1 kB] Get:91 http://mirror-ubc.debian.org/debian/ wheezy/main dash amd64 0.5.7-3 [113 kB] Get:92 http://mirror-ubc.debian.org/debian/ wheezy/main diffutils amd64 1:3.2-6 [366 kB] Get:93 http://mirror-ubc.debian.org/debian/ wheezy/main e2fslibs amd64 1.42.5-1.1+deb7u1 [197 kB] Get:94 http://mirror-ubc.debian.org/debian/ wheezy/main e2fsprogs amd64 1.42.5-1.1+deb7u1 [979 kB] Get:95 http://mirror-ubc.debian.org/debian/ wheezy/main findutils amd64 4.4.2-4 [694 kB] Get:96 http://mirror-ubc.debian.org/debian/ wheezy/main grep amd64 2.12-2 [454 kB] Get:97 http://mirror-ubc.debian.org/debian/ wheezy/main gzip amd64 1.5-1.1 [119 kB] Get:98 http://mirror-ubc.debian.org/debian/ wheezy/main hostname amd64 3.11 [15.0 kB] Get:99 http://mirror-ubc.debian.org/debian/ wheezy/main ncurses-bin amd64 5.9-10 [335 kB] Get:100 http://mirror-ubc.debian.org/debian/ wheezy/main libswitch-perl all 2.16-2 [21.0 kB] Get:101 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-isa-perl all 0.36-3 [12.3 kB] Get:102 http://mirror-ubc.debian.org/debian/ wheezy/main libgdbm3 amd64 1.8.3-11 [46.9 kB] Get:103 http://mirror-ubc.debian.org/debian/ wheezy/main libtext-charwidth-perl amd64 0.04-7+b1 [11.2 kB] Get:104 http://mirror-ubc.debian.org/debian/ wheezy/main libtext-iconv-perl amd64 1.7-5 [17.6 kB] Get:105 http://mirror-ubc.debian.org/debian/ wheezy/main liblocale-gettext-perl amd64 1.05-7+b1 [20.4 kB] Get:106 http://mirror-ubc.debian.org/debian/ wheezy/main sed amd64 4.2.1-10 [251 kB] Get:107 http://mirror-ubc.debian.org/debian/ wheezy/main sysvinit amd64 2.88dsf-41+deb7u1 [133 kB] Get:108 http://mirror-ubc.debian.org/debian/ wheezy/main base-passwd amd64 3.5.26 [46.3 kB] Get:109 http://mirror-ubc.debian.org/debian/ wheezy/main bsdutils amd64 1:2.20.1-5.3 [85.5 kB] Get:110 http://mirror-ubc.debian.org/debian/ wheezy/main ncurses-base all 5.9-10 [198 kB] Get:111 http://mirror-ubc.debian.org/debian/ wheezy/main debian-archive-keyring all 2014.3~deb7u1 [60.7 kB] Get:112 http://mirror-ubc.debian.org/debian/ wheezy/main readline-common all 6.2+dfsg-0.1 [31.9 kB] Get:113 http://mirror-ubc.debian.org/debian/ wheezy/main libreadline6 amd64 6.2+dfsg-0.1 [166 kB] Get:114 http://mirror-ubc.debian.org/debian/ wheezy/main libusb-0.1-4 amd64 2:0.1.12-20+nmu1 [23.1 kB] Get:115 http://mirror-ubc.debian.org/debian/ wheezy/main libapt-pkg4.12 amd64 0.9.7.9+deb7u7 [891 kB] Get:116 http://mirror-ubc.debian.org/debian/ wheezy/main apt amd64 0.9.7.9+deb7u7 [1262 kB] Get:117 http://mirror-ubc.debian.org/debian/ wheezy/main libncurses5 amd64 5.9-10 [113 kB] Get:118 http://mirror-ubc.debian.org/debian/ wheezy/main libss2 amd64 1.42.5-1.1+deb7u1 [61.4 kB] Get:119 http://mirror-ubc.debian.org/debian/ wheezy/main libncursesw5 amd64 5.9-10 [141 kB] Get:120 http://mirror-ubc.debian.org/debian/ wheezy/main libprocps0 amd64 1:3.3.3-3 [58.1 kB] Get:121 http://mirror-ubc.debian.org/debian/ wheezy/main mawk amd64 1.3.3-17 [90.8 kB] Get:122 http://mirror-ubc.debian.org/debian/ wheezy/main libcap2 amd64 1:2.22-1.2 [13.6 kB] Get:123 http://mirror-ubc.debian.org/debian/ wheezy/main libpcre3 amd64 1:8.30-5 [242 kB] Get:124 http://mirror-ubc.debian.org/debian/ wheezy/main libbsd0 amd64 0.4.2-1 [59.3 kB] Get:125 http://mirror-ubc.debian.org/debian/ wheezy/main libjpeg62 amd64 6b1-3+deb7u1 [96.9 kB] Get:126 http://mirror-ubc.debian.org/debian/ wheezy/main libpam-runtime all 1.1.3-7.1 [228 kB] Get:127 http://mirror-ubc.debian.org/debian/ wheezy/main xz-utils amd64 5.1.1alpha+20120614-2 [237 kB] Get:128 http://mirror-ubc.debian.org/debian/ wheezy/main adduser all 3.113+nmu3 [264 kB] Get:129 http://mirror-ubc.debian.org/debian/ wheezy/main procps amd64 1:3.3.3-3 [252 kB] Get:130 http://mirror-ubc.debian.org/debian/ wheezy/main debconf-i18n all 1.5.49 [237 kB] Get:131 http://mirror-ubc.debian.org/debian/ wheezy/main mime-support all 3.52-1+deb7u1 [35.5 kB] Get:132 http://mirror-ubc.debian.org/debian/ wheezy/main ucf all 3.0025+nmu3 [70.8 kB] Get:133 http://mirror-ubc.debian.org/debian/ wheezy/main csh amd64 20110502-2 [245 kB] Get:134 http://mirror-ubc.debian.org/debian/ wheezy/main libmailtools-perl all 2.09-1 [97.6 kB] Get:135 http://mirror-ubc.debian.org/debian/ wheezy/main libparse-recdescent-perl all 1.967009+dfsg-1 [172 kB] Get:136 http://mirror-ubc.debian.org/debian/ wheezy/main libemboss-acd-perl all 2.2.0-7+deb7u1 [10.7 kB] Get:137 http://mirror-ubc.debian.org/debian/ wheezy/main emboss-explorer all 2.2.0-7+deb7u1 [46.6 kB] Get:138 http://mirror-ubc.debian.org/debian/ wheezy/main gcc-4.4-base amd64 4.4.7-2 [127 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 97.8 MB in 1s (60.2 MB/s) (Reading database ... 10332 files and directories currently installed.) Preparing to replace emboss 6.1.0-5 (using .../emboss_6.4.0-2_amd64.deb) ... Unpacking replacement emboss ... (Reading database ... 10544 files and directories currently installed.) Removing libnucleus6 ... (Reading database ... 10538 files and directories currently installed.) Preparing to replace libc-bin 2.11.3-4 (using .../libc-bin_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-38+deb7u12) ... Installing new version of config file /etc/bindresvport.blacklist ... (Reading database ... 10555 files and directories currently installed.) Preparing to replace libc6 2.11.3-4 (using .../libc6_2.13-38+deb7u12_amd64.deb) ... Checking for services that may need to be restarted... Checking init scripts... Unpacking replacement libc6 ... Setting up libc6 (2.13-38+deb7u12) ... Checking for services that may need to be restarted... Checking init scripts... Nothing to restart. Selecting previously deselected package gcc-4.7-base. (Reading database ... 10560 files and directories currently installed.) Unpacking gcc-4.7-base (from .../gcc-4.7-base_4.7.2-5_amd64.deb) ... Setting up gcc-4.7-base (4.7.2-5) ... Selecting previously deselected package multiarch-support. (Reading database ... 10567 files and directories currently installed.) Unpacking multiarch-support (from .../multiarch-support_2.13-38+deb7u12_amd64.deb) ... Setting up multiarch-support (2.13-38+deb7u12) ... (Reading database ... 10571 files and directories currently installed.) Preparing to replace libgcc1 1:4.4.5-8 (using .../libgcc1_1%3a4.7.2-5_amd64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.7.2-5) ... (Reading database ... 10571 files and directories currently installed.) Preparing to replace libexpat1 2.0.1-7+squeeze1 (using .../libexpat1_2.1.0-1+deb7u5_amd64.deb) ... Unpacking replacement libexpat1 ... Preparing to replace zlib1g 1:1.2.3.4.dfsg-3 (using .../zlib1g_1%3a1.2.7.dfsg-13_amd64.deb) ... Unpacking replacement zlib1g ... Setting up zlib1g (1:1.2.7.dfsg-13) ... (Reading database ... 10571 files and directories currently installed.) Preparing to replace libfreetype6 2.4.2-2.1+squeeze4 (using .../libfreetype6_2.4.9-1.1+deb7u7_amd64.deb) ... Unpacking replacement libfreetype6 ... Selecting previously deselected package libjpeg8. Unpacking libjpeg8 (from .../libjpeg8_8d-1+deb7u1_amd64.deb) ... Preparing to replace libpng12-0 1.2.44-1+squeeze4 (using .../libpng12-0_1.2.49-1+deb7u2_amd64.deb) ... Unpacking replacement libpng12-0 ... Preparing to replace libgd2-noxpm 2.0.36~rc1~dfsg-5 (using .../libgd2-noxpm_2.0.36~rc1~dfsg-6.1+deb7u11_amd64.deb) ... Unpacking replacement libgd2-noxpm ... Selecting previously deselected package libhpdf-2.2.1. Unpacking libhpdf-2.2.1 (from .../libhpdf-2.2.1_2.2.1-1_amd64.deb) ... Selecting previously deselected package mysql-common. Unpacking mysql-common (from .../mysql-common_5.5.59-0+deb7u1_all.deb) ... Preparing to replace libstdc++6 4.4.5-8 (using .../libstdc++6_4.7.2-5_amd64.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.7.2-5) ... Selecting previously deselected package libmysqlclient18. (Reading database ... 10589 files and directories currently installed.) Unpacking libmysqlclient18 (from .../libmysqlclient18_5.5.59-0+deb7u1_amd64.deb) ... Preparing to replace libcomerr2 1.41.12-4stable1 (using .../libcomerr2_1.42.5-1.1+deb7u1_amd64.deb) ... Unpacking replacement libcomerr2 ... Setting up libcomerr2 (1.42.5-1.1+deb7u1) ... Selecting previously deselected package libkeyutils1. (Reading database ... 10598 files and directories currently installed.) Unpacking libkeyutils1 (from .../libkeyutils1_1.5.5-3+deb7u1_amd64.deb) ... Selecting previously deselected package libkrb5support0. Unpacking libkrb5support0 (from .../libkrb5support0_1.10.1+dfsg-5+deb7u9_amd64.deb) ... Selecting previously deselected package libk5crypto3. Unpacking libk5crypto3 (from .../libk5crypto3_1.10.1+dfsg-5+deb7u9_amd64.deb) ... Selecting previously deselected package libkrb5-3. Unpacking libkrb5-3 (from .../libkrb5-3_1.10.1+dfsg-5+deb7u9_amd64.deb) ... Selecting previously deselected package libgssapi-krb5-2. Unpacking libgssapi-krb5-2 (from .../libgssapi-krb5-2_1.10.1+dfsg-5+deb7u9_amd64.deb) ... Selecting previously deselected package libp11-kit0. Unpacking libp11-kit0 (from .../libp11-kit0_0.12-3_amd64.deb) ... Preparing to replace libtasn1-3 2.7-1+squeeze+1 (using .../libtasn1-3_2.13-2+deb7u5_amd64.deb) ... Unpacking replacement libtasn1-3 ... Preparing to replace libgnutls26 2.8.6-1+squeeze3 (using .../libgnutls26_2.12.20-8+deb7u5_amd64.deb) ... Unpacking replacement libgnutls26 ... Preparing to replace libgpg-error0 1.6-1 (using .../libgpg-error0_1.10-3.1_amd64.deb) ... Unpacking replacement libgpg-error0 ... Preparing to replace libgcrypt11 1.4.5-2+squeeze1 (using .../libgcrypt11_1.5.0-5+deb7u6_amd64.deb) ... Unpacking replacement libgcrypt11 ... Selecting previously deselected package libdb5.1. Unpacking libdb5.1 (from .../libdb5.1_5.1.29-5+deb7u1_amd64.deb) ... Setting up libdb5.1 (5.1.29-5+deb7u1) ... (Reading database ... 10654 files and directories currently installed.) Preparing to replace libsasl2-2 2.1.23.dfsg1-7 (using .../libsasl2-2_2.1.25.dfsg1-6+deb7u1_amd64.deb) ... Unpacking replacement libsasl2-2 ... Preparing to replace libldap-2.4-2 2.4.23-7.3 (using .../libldap-2.4-2_2.4.31-2+deb7u3_amd64.deb) ... Unpacking replacement libldap-2.4-2 ... Preparing to replace debconf 1.5.36.1 (using .../debconf_1.5.49_all.deb) ... Unpacking replacement debconf ... Setting up debconf (1.5.49) ... Selecting previously deselected package libssl1.0.0. (Reading database ... 10659 files and directories currently installed.) Unpacking libssl1.0.0 (from .../libssl1.0.0_1.0.1t-1+deb7u3_amd64.deb) ... Selecting previously deselected package libpq5. Unpacking libpq5 (from .../libpq5_9.1.24lts2-0+deb7u2_amd64.deb) ... (Reading database ... 10699 files and directories currently installed.) Removing libajax6 ... (Reading database ... 10691 files and directories currently installed.) Preparing to replace emboss-lib 6.1.0-5 (using .../emboss-lib_6.4.0-2_amd64.deb) ... Unpacking replacement emboss-lib ... Preparing to replace libxau6 1:1.0.6-1 (using .../libxau6_1%3a1.0.7-1_amd64.deb) ... Unpacking replacement libxau6 ... Preparing to replace libxdmcp6 1:1.0.3-2 (using .../libxdmcp6_1%3a1.1.1-1_amd64.deb) ... Unpacking replacement libxdmcp6 ... Preparing to replace libxcb1 1.6-1+squeeze1 (using .../libxcb1_1.8.1-2+deb7u1_amd64.deb) ... Unpacking replacement libxcb1 ... Preparing to replace libx11-6 2:1.3.3-4+squeeze1 (using .../libx11-6_2%3a1.5.0-1+deb7u4_amd64.deb) ... Unpacking replacement libx11-6 ... Preparing to replace libx11-data 2:1.3.3-4+squeeze1 (using .../libx11-data_2%3a1.5.0-1+deb7u4_all.deb) ... Unpacking replacement libx11-data ... Preparing to replace emboss-data 6.1.0-5 (using .../emboss-data_6.4.0-2_all.deb) ... Unpacking replacement emboss-data ... Preparing to replace sensible-utils 0.0.4 (using .../sensible-utils_0.0.7+deb7u1_all.deb) ... Unpacking replacement sensible-utils ... Setting up sensible-utils (0.0.7+deb7u1) ... (Reading database ... 11134 files and directories currently installed.) Preparing to replace debianutils 3.4 (using .../debianutils_4.3.2_amd64.deb) ... Unpacking replacement debianutils ... Setting up debianutils (4.3.2) ... Selecting previously deselected package libsemanage-common. (Reading database ... 11160 files and directories currently installed.) Unpacking libsemanage-common (from .../libsemanage-common_2.1.6-6_all.deb) ... Setting up libsemanage-common (2.1.6-6) ... (Reading database ... 11167 files and directories currently installed.) Preparing to replace libsepol1 2.0.41-1 (using .../libsepol1_2.1.4-3_amd64.deb) ... Unpacking replacement libsepol1 ... Setting up libsepol1 (2.1.4-3) ... Selecting previously deselected package libustr-1.0-1. (Reading database ... 11167 files and directories currently installed.) Unpacking libustr-1.0-1 (from .../libustr-1.0-1_1.0.4-3_amd64.deb) ... Setting up libustr-1.0-1 (1.0.4-3) ... (Reading database ... 11178 files and directories currently installed.) Preparing to replace libbz2-1.0 1.0.5-6+squeeze1 (using .../libbz2-1.0_1.0.6-4_amd64.deb) ... Unpacking replacement libbz2-1.0 ... Setting up libbz2-1.0 (1.0.6-4) ... (Reading database ... 11178 files and directories currently installed.) Preparing to replace libselinux1 2.0.96-1 (using .../libselinux1_2.1.9-5_amd64.deb) ... Unpacking replacement libselinux1 ... Setting up libselinux1 (2.1.9-5) ... Selecting previously deselected package libsemanage1. (Reading database ... 11178 files and directories currently installed.) Unpacking libsemanage1 (from .../libsemanage1_2.1.6-6_amd64.deb) ... Setting up libsemanage1 (2.1.6-6) ... (Reading database ... 11183 files and directories currently installed.) Preparing to replace libpam0g 1.1.1-6.1+squeeze1 (using .../libpam0g_1.1.3-7.1_amd64.deb) ... Unpacking replacement libpam0g ... Setting up libpam0g (1.1.3-7.1) ... Checking for services that may need to be restarted...Checking init scripts... Nothing to restart. Selecting previously deselected package libpam-modules-bin. (Reading database ... 11183 files and directories currently installed.) Unpacking libpam-modules-bin (from .../libpam-modules-bin_1.1.3-7.1_amd64.deb) ... Replacing files in old package libpam-modules ... Setting up libpam-modules-bin (1.1.3-7.1) ... (Reading database ... 11189 files and directories currently installed.) Preparing to replace libpam-modules 1.1.1-6.1+squeeze1 (using .../libpam-modules_1.1.3-7.1_amd64.deb) ... Unpacking replacement libpam-modules ... Setting up libpam-modules (1.1.3-7.1) ... Installing new version of config file /etc/security/group.conf ... (Reading database ... 11188 files and directories currently installed.) Preparing to replace passwd 1:4.1.4.2+svn3283-2+squeeze1 (using .../passwd_1%3a4.1.5.1-1+deb7u1_amd64.deb) ... Unpacking replacement passwd ... Setting up passwd (1:4.1.5.1-1+deb7u1) ... (Reading database ... 11208 files and directories currently installed.) Preparing to replace libuuid1 2.17.2-9 (using .../libuuid1_2.20.1-5.3_amd64.deb) ... Unpacking replacement libuuid1 ... Setting up libuuid1 (2.20.1-5.3) ... (Reading database ... 11209 files and directories currently installed.) Preparing to replace libblkid1 2.17.2-9 (using .../libblkid1_2.20.1-5.3_amd64.deb) ... Unpacking replacement libblkid1 ... Setting up libblkid1 (2.20.1-5.3) ... (Reading database ... 11209 files and directories currently installed.) Preparing to replace libslang2 2.2.2-4 (using .../libslang2_2.2.4-15_amd64.deb) ... Unpacking replacement libslang2 ... Setting up libslang2 (2.2.4-15) ... Selecting previously deselected package libtinfo5. (Reading database ... 11207 files and directories currently installed.) Unpacking libtinfo5 (from .../libtinfo5_5.9-10_amd64.deb) ... Setting up libtinfo5 (5.9-10) ... (Reading database ... 11216 files and directories currently installed.) Preparing to replace lsb-base 3.2-23.2squeeze1 (using .../lsb-base_4.1+Debian8+deb7u1_all.deb) ... Unpacking replacement lsb-base ... Setting up lsb-base (4.1+Debian8+deb7u1) ... (Reading database ... 11218 files and directories currently installed.) Preparing to replace tzdata 2014e-0squeeze1 (using .../tzdata_2018c-0+deb7u1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2018c-0+deb7u1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Feb 26 20:47:34 UTC 2018. Universal Time is now: Mon Feb 26 20:47:34 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Selecting previously deselected package liblzma5. (Reading database ... 11257 files and directories currently installed.) Unpacking liblzma5 (from .../liblzma5_5.1.1alpha+20120614-2_amd64.deb) ... Setting up liblzma5 (5.1.1alpha+20120614-2) ... (Reading database ... 11266 files and directories currently installed.) Preparing to replace dpkg 1.15.11 (using .../dpkg_1.16.18_amd64.deb) ... Unpacking replacement dpkg ... Setting up dpkg (1.16.18) ... (Reading database ... 11287 files and directories currently installed.) Preparing to replace util-linux 2.17.2-9 (using .../util-linux_2.20.1-5.3_amd64.deb) ... Removing obsolete conffile /etc/init.d/hwclockfirst.sh ... Unpacking replacement util-linux ... Setting up util-linux (2.20.1-5.3) ... Installing new version of config file /etc/init.d/hwclock.sh ... (Reading database ... 11282 files and directories currently installed.) Preparing to replace insserv 1.14.0-2 (using .../insserv_1.14.0-5_amd64.deb) ... Unpacking replacement insserv ... Setting up insserv (1.14.0-5) ... Installing new version of config file /etc/insserv.conf ... (Reading database ... 11272 files and directories currently installed.) Preparing to replace sysvinit-utils 2.88dsf-13.1+squeeze1 (using .../sysvinit-utils_2.88dsf-41+deb7u1_amd64.deb) ... Unpacking replacement sysvinit-utils ... Setting up sysvinit-utils (2.88dsf-41+deb7u1) ... (Reading database ... 11274 files and directories currently installed.) Preparing to replace sysv-rc 2.88dsf-13.1+squeeze1 (using .../sysv-rc_2.88dsf-41+deb7u1_all.deb) ... Unpacking replacement sysv-rc ... Setting up sysv-rc (2.88dsf-41+deb7u1) ... Selecting previously unselected package libmount1. (Reading database ... 11275 files and directories currently installed.) Unpacking libmount1 (from .../libmount1_2.20.1-5.3_amd64.deb) ... Setting up libmount1 (2.20.1-5.3) ... (Reading database ... 11281 files and directories currently installed.) Preparing to replace mount 2.17.2-9 (using .../mount_2.20.1-5.3_amd64.deb) ... Unpacking replacement mount ... Setting up mount (2.20.1-5.3) ... (Reading database ... 11283 files and directories currently installed.) Preparing to replace libattr1 1:2.4.44-2 (using .../libattr1_1%3a2.4.46-8_amd64.deb) ... Unpacking replacement libattr1:amd64 ... Setting up libattr1:amd64 (1:2.4.46-8) ... (Reading database ... 11284 files and directories currently installed.) Preparing to replace libacl1 2.2.49-4 (using .../libacl1_2.2.51-8_amd64.deb) ... Unpacking replacement libacl1:amd64 ... Setting up libacl1:amd64 (2.2.51-8) ... (Reading database ... 11284 files and directories currently installed.) Preparing to replace coreutils 8.5-1 (using .../coreutils_8.13-3.5_amd64.deb) ... Unpacking replacement coreutils ... Setting up coreutils (8.13-3.5) ... (Reading database ... 11205 files and directories currently installed.) Preparing to replace initscripts 2.88dsf-13.1+squeeze1 (using .../initscripts_2.88dsf-41+deb7u1_amd64.deb) ... Removing unmodified and obsolete conffile /etc/default/bootlogd ... Removing unmodified and obsolete conffile /etc/init.d/mountoverflowtmp ... Upgrading unmodified configuration file /etc/default/rcS ... Unpacking replacement initscripts ... Setting up initscripts (2.88dsf-41+deb7u1) ... Installing new version of config file /etc/init.d/bootlogs ... Installing new version of config file /etc/init.d/bootmisc.sh ... Installing new version of config file /etc/init.d/checkfs.sh ... Installing new version of config file /etc/init.d/checkroot.sh ... Installing new version of config file /etc/init.d/mountall.sh ... Installing new version of config file /etc/init.d/mountall-bootclean.sh ... Installing new version of config file /etc/init.d/mountnfs.sh ... Installing new version of config file /etc/init.d/mountnfs-bootclean.sh ... Installing new version of config file /etc/init.d/mountdevsubfs.sh ... Installing new version of config file /etc/init.d/mountkernfs.sh ... Installing new version of config file /etc/init.d/mtab.sh ... Installing new version of config file /etc/init.d/rc.local ... Installing new version of config file /etc/init.d/sendsigs ... Installing new version of config file /etc/init.d/umountfs ... Installing new version of config file /etc/init.d/umountnfs.sh ... Installing new version of config file /etc/init.d/umountroot ... Installing new version of config file /etc/init.d/urandom ... Installing new version of config file /etc/default/tmpfs ... Installing new version of config file /etc/network/if-up.d/mountnfs ... guest environment detected: Linking /run to /var/run guest environment detected: Linking /run/lock to /var/lock guest environment detected: Linking /run/shm to /dev/shm (Reading database ... 11205 files and directories currently installed.) Preparing to replace base-files 6.0squeeze10 (using .../base-files_7.1wheezy11_amd64.deb) ... Unpacking replacement base-files ... Setting up base-files (7.1wheezy11) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Updating /etc/profile to current default. (Reading database ... 11208 files and directories currently installed.) Preparing to replace bash 4.1-3 (using .../bash_4.2+dfsg-0.1+deb7u4_amd64.deb) ... Unpacking replacement bash ... Setting up bash (4.2+dfsg-0.1+deb7u4) ... Installing new version of config file /etc/bash.bashrc ... Installing new version of config file /etc/skel/.bashrc ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 11211 files and directories currently installed.) Preparing to replace dash 0.5.5.1-7.4 (using .../dash_0.5.7-3_amd64.deb) ... Unpacking replacement dash ... Setting up dash (0.5.7-3) ... (Reading database ... 11211 files and directories currently installed.) Preparing to replace diffutils 1:3.0-1 (using .../diffutils_1%3a3.2-6_amd64.deb) ... Unpacking replacement diffutils ... Setting up diffutils (1:3.2-6) ... (Reading database ... 11212 files and directories currently installed.) Preparing to replace e2fslibs 1.41.12-4stable1 (using .../e2fslibs_1.42.5-1.1+deb7u1_amd64.deb) ... Unpacking replacement e2fslibs:amd64 ... Setting up e2fslibs:amd64 (1.42.5-1.1+deb7u1) ... (Reading database ... 11212 files and directories currently installed.) Preparing to replace e2fsprogs 1.41.12-4stable1 (using .../e2fsprogs_1.42.5-1.1+deb7u1_amd64.deb) ... Unpacking replacement e2fsprogs ... Setting up e2fsprogs (1.42.5-1.1+deb7u1) ... Installing new version of config file /etc/mke2fs.conf ... (Reading database ... 11208 files and directories currently installed.) Preparing to replace findutils 4.4.2-1+b1 (using .../findutils_4.4.2-4_amd64.deb) ... Unpacking replacement findutils ... Setting up findutils (4.4.2-4) ... (Reading database ... 11208 files and directories currently installed.) Preparing to replace grep 2.6.3-3+squeeze1 (using .../archives/grep_2.12-2_amd64.deb) ... Unpacking replacement grep ... Setting up grep (2.12-2) ... (Reading database ... 11208 files and directories currently installed.) Preparing to replace gzip 1.3.12-9+squeeze1 (using .../gzip_1.5-1.1_amd64.deb) ... Unpacking replacement gzip ... Setting up gzip (1.5-1.1) ... (Reading database ... 11208 files and directories currently installed.) Preparing to replace hostname 3.04 (using .../hostname_3.11_amd64.deb) ... Unpacking replacement hostname ... Setting up hostname (3.11) ... (Reading database ... 11207 files and directories currently installed.) Preparing to replace login 1:4.1.4.2+svn3283-2+squeeze1 (using .../login_1%3a4.1.5.1-1+deb7u1_amd64.deb) ... Unpacking replacement login ... Setting up login (1:4.1.5.1-1+deb7u1) ... Installing new version of config file /etc/pam.d/login ... Installing new version of config file /etc/login.defs ... Installing new version of config file /etc/securetty ... (Reading database ... 11222 files and directories currently installed.) Preparing to replace ncurses-bin 5.7+20100313-5 (using .../ncurses-bin_5.9-10_amd64.deb) ... Unpacking replacement ncurses-bin ... Setting up ncurses-bin (5.9-10) ... Selecting previously unselected package libswitch-perl. (Reading database ... 11224 files and directories currently installed.) Unpacking libswitch-perl (from .../libswitch-perl_2.16-2_all.deb) ... Selecting previously unselected package libclass-isa-perl. Unpacking libclass-isa-perl (from .../libclass-isa-perl_0.36-3_all.deb) ... Preparing to replace perl-modules 5.10.1-17squeeze6 (using .../perl-modules_5.14.2-21+deb7u5_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace libgdbm3 1.8.3-9 (using .../libgdbm3_1.8.3-11_amd64.deb) ... Unpacking replacement libgdbm3:amd64 ... Preparing to replace perl 5.10.1-17squeeze6 (using .../perl_5.14.2-21+deb7u5_amd64.deb) ... Unpacking replacement perl ... Preparing to replace libtext-charwidth-perl 0.04-6 (using .../libtext-charwidth-perl_0.04-7+b1_amd64.deb) ... Unpacking replacement libtext-charwidth-perl ... Preparing to replace libtext-iconv-perl 1.7-2 (using .../libtext-iconv-perl_1.7-5_amd64.deb) ... Unpacking replacement libtext-iconv-perl ... Preparing to replace perl-base 5.10.1-17squeeze6 (using .../perl-base_5.14.2-21+deb7u5_amd64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-21+deb7u5) ... (Reading database ... 11743 files and directories currently installed.) Preparing to replace liblocale-gettext-perl 1.05-6 (using .../liblocale-gettext-perl_1.05-7+b1_amd64.deb) ... Unpacking replacement liblocale-gettext-perl ... Preparing to replace sed 4.2.1-7 (using .../sed_4.2.1-10_amd64.deb) ... Unpacking replacement sed ... Setting up sed (4.2.1-10) ... (Reading database ... 11743 files and directories currently installed.) Preparing to replace sysvinit 2.88dsf-13.1+squeeze1 (using .../sysvinit_2.88dsf-41+deb7u1_amd64.deb) ... Unpacking replacement sysvinit ... Setting up sysvinit (2.88dsf-41+deb7u1) ... Not restarting sysvinit (Reading database ... 11743 files and directories currently installed.) Preparing to replace tar 1.23-3 (using .../tar_1.26+dfsg-0.1+deb7u1_amd64.deb) ... Unpacking replacement tar ... Setting up tar (1.26+dfsg-0.1+deb7u1) ... (Reading database ... 11744 files and directories currently installed.) Preparing to replace base-passwd 3.5.22 (using .../base-passwd_3.5.26_amd64.deb) ... Unpacking replacement base-passwd ... Setting up base-passwd (3.5.26) ... (Reading database ... 11746 files and directories currently installed.) Preparing to replace bsdutils 1:2.17.2-9 (using .../bsdutils_1%3a2.20.1-5.3_amd64.deb) ... Unpacking replacement bsdutils ... Setting up bsdutils (1:2.20.1-5.3) ... (Reading database ... 11746 files and directories currently installed.) Preparing to replace ncurses-base 5.7+20100313-5 (using .../ncurses-base_5.9-10_all.deb) ... Unpacking replacement ncurses-base ... Setting up ncurses-base (5.9-10) ... Installing new version of config file /etc/terminfo/README ... (Reading database ... 11748 files and directories currently installed.) Preparing to replace gpgv 1.4.10-4+squeeze4 (using .../gpgv_1.4.12-7+deb7u9_amd64.deb) ... Unpacking replacement gpgv ... Setting up gpgv (1.4.12-7+deb7u9) ... (Reading database ... 11748 files and directories currently installed.) Preparing to replace debian-archive-keyring 2010.08.28+squeeze1 (using .../debian-archive-keyring_2014.3~deb7u1_all.deb) ... Unpacking replacement debian-archive-keyring ... Setting up debian-archive-keyring (2014.3~deb7u1) ... (Reading database ... 11755 files and directories currently installed.) Preparing to replace readline-common 6.1-3 (using .../readline-common_6.2+dfsg-0.1_all.deb) ... Unpacking replacement readline-common ... Setting up readline-common (6.2+dfsg-0.1) ... (Reading database ... 11754 files and directories currently installed.) Preparing to replace libreadline6 6.1-3 (using .../libreadline6_6.2+dfsg-0.1_amd64.deb) ... Unpacking replacement libreadline6:amd64 ... Setting up libreadline6:amd64 (6.2+dfsg-0.1) ... (Reading database ... 11754 files and directories currently installed.) Preparing to replace libusb-0.1-4 2:0.1.12-16 (using .../libusb-0.1-4_2%3a0.1.12-20+nmu1_amd64.deb) ... Unpacking replacement libusb-0.1-4:amd64 ... Setting up libusb-0.1-4:amd64 (2:0.1.12-20+nmu1) ... (Reading database ... 11753 files and directories currently installed.) Preparing to replace gnupg 1.4.10-4+squeeze4 (using .../gnupg_1.4.12-7+deb7u9_amd64.deb) ... Unpacking replacement gnupg ... Setting up gnupg (1.4.12-7+deb7u9) ... Selecting previously unselected package libapt-pkg4.12:amd64. dpkg: considering deconfiguration of apt, which would be broken by installation of libapt-pkg4.12:amd64 ... dpkg: yes, will deconfigure apt (broken by libapt-pkg4.12:amd64) (Reading database ... 11742 files and directories currently installed.) Unpacking libapt-pkg4.12:amd64 (from .../libapt-pkg4.12_0.9.7.9+deb7u7_amd64.deb) ... De-configuring apt ... Setting up libapt-pkg4.12:amd64 (0.9.7.9+deb7u7) ... (Reading database ... 11790 files and directories currently installed.) Preparing to replace apt 0.8.10.3+squeeze1 (using .../apt_0.9.7.9+deb7u7_amd64.deb) ... Unpacking replacement apt ... Setting up apt (0.9.7.9+deb7u7) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt ... gpg: key B98321F9: "Squeeze Stable Release Key " not changed gpg: key 473041FA: "Debian Archive Automatic Signing Key (6.0/squeeze) " not changed gpg: key 65FFB764: "Wheezy Stable Release Key " not changed gpg: key 46925553: "Debian Archive Automatic Signing Key (7.0/wheezy) " not changed gpg: key 518E17E1: "Jessie Stable Release Key " not changed gpg: key 2B90D010: "Debian Archive Automatic Signing Key (8/jessie) " not changed gpg: key C857C906: "Debian Security Archive Automatic Signing Key (8/jessie) " not changed gpg: Total number processed: 7 gpg: unchanged: 7 gpg: checking the trustdb gpg: WARNING: digest algorithm MD5 is deprecated gpg: please see http://www.gnupg.org/faq/weak-digest-algos.html for more information gpg: no ultimately trusted keys found (Reading database ... 11701 files and directories currently installed.) Preparing to replace libncurses5 5.7+20100313-5 (using .../libncurses5_5.9-10_amd64.deb) ... Unpacking replacement libncurses5:amd64 ... Setting up libncurses5:amd64 (5.9-10) ... (Reading database ... 11693 files and directories currently installed.) Preparing to replace libss2 1.41.12-4stable1 (using .../libss2_1.42.5-1.1+deb7u1_amd64.deb) ... Unpacking replacement libss2:amd64 ... Setting up libss2:amd64 (1.42.5-1.1+deb7u1) ... (Reading database ... 11693 files and directories currently installed.) Preparing to replace libncursesw5 5.7+20100313-5 (using .../libncursesw5_5.9-10_amd64.deb) ... Unpacking replacement libncursesw5:amd64 ... Selecting previously unselected package libprocps0:amd64. Unpacking libprocps0:amd64 (from .../libprocps0_1%3a3.3.3-3_amd64.deb) ... Preparing to replace mawk 1.3.3-15 (using .../mawk_1.3.3-17_amd64.deb) ... Unpacking replacement mawk ... Preparing to replace libcap2 1:2.19-3 (using .../libcap2_1%3a2.22-1.2_amd64.deb) ... Unpacking replacement libcap2:amd64 ... Preparing to replace libmagic1 5.04-5+squeeze5 (using .../libmagic1_5.11-2+deb7u9_amd64.deb) ... Unpacking replacement libmagic1:amd64 ... Preparing to replace libpcre3 8.02-1.1 (using .../libpcre3_1%3a8.30-5_amd64.deb) ... Unpacking replacement libpcre3:amd64 ... Selecting previously unselected package libbsd0:amd64. Unpacking libbsd0:amd64 (from .../libbsd0_0.4.2-1_amd64.deb) ... Preparing to replace libjpeg62 6b1-1 (using .../libjpeg62_6b1-3+deb7u1_amd64.deb) ... Unpacking replacement libjpeg62:amd64 ... Preparing to replace libsqlite3-0 3.7.3-1 (using .../libsqlite3-0_3.7.13-1+deb7u4_amd64.deb) ... Unpacking replacement libsqlite3-0:amd64 ... Preparing to replace libpam-runtime 1.1.1-6.1+squeeze1 (using .../libpam-runtime_1.1.3-7.1_all.deb) ... Unpacking replacement libpam-runtime ... Setting up libpam-runtime (1.1.3-7.1) ... (Reading database ... 11700 files and directories currently installed.) Preparing to replace xz-utils 5.0.0-2 (using .../xz-utils_5.1.1alpha+20120614-2_amd64.deb) ... Unpacking replacement xz-utils ... Setting up xz-utils (5.1.1alpha+20120614-2) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode (Reading database ... 11702 files and directories currently installed.) Preparing to replace adduser 3.112+nmu2 (using .../adduser_3.113+nmu3_all.deb) ... Unpacking replacement adduser ... Preparing to replace procps 1:3.2.8-9squeeze1 (using .../procps_1%3a3.3.3-3_amd64.deb) ... invoke-rc.d: policy-rc.d denied execution of stop. Unpacking replacement procps ... Preparing to replace debconf-i18n 1.5.36.1 (using .../debconf-i18n_1.5.49_all.deb) ... Unpacking replacement debconf-i18n ... Preparing to replace mime-support 3.48-1 (using .../mime-support_3.52-1+deb7u1_all.deb) ... Unpacking replacement mime-support ... Preparing to replace ucf 3.0025+nmu1 (using .../ucf_3.0025+nmu3_all.deb) ... Unpacking replacement ucf ... Preparing to replace libaprutil1-ldap 1.3.9+dfsg-5 (using .../libaprutil1-ldap_1.4.1-3+deb7u1_amd64.deb) ... Unpacking replacement libaprutil1-ldap ... Preparing to replace libaprutil1-dbd-sqlite3 1.3.9+dfsg-5 (using .../libaprutil1-dbd-sqlite3_1.4.1-3+deb7u1_amd64.deb) ... Unpacking replacement libaprutil1-dbd-sqlite3 ... Preparing to replace libapr1 1.4.2-6+squeeze4 (using .../libapr1_1.4.6-3+deb7u2_amd64.deb) ... Unpacking replacement libapr1 ... Preparing to replace libaprutil1 1.3.9+dfsg-5 (using .../libaprutil1_1.4.1-3+deb7u1_amd64.deb) ... Unpacking replacement libaprutil1 ... Preparing to replace apache2 2.2.16-6+squeeze12 (using .../apache2_2.2.22-13+deb7u12_amd64.deb) ... Unpacking replacement apache2 ... Preparing to replace apache2-mpm-worker 2.2.16-6+squeeze12 (using .../apache2-mpm-worker_2.2.22-13+deb7u12_amd64.deb) ... invoke-rc.d: policy-rc.d denied execution of stop. Unpacking replacement apache2-mpm-worker ... Preparing to replace apache2.2-common 2.2.16-6+squeeze12 (using .../apache2.2-common_2.2.22-13+deb7u12_amd64.deb) ... Moving obsolete conffile /etc/apache2/mods-available/version.load out of the way... Unpacking replacement apache2.2-common ... Preparing to replace apache2.2-bin 2.2.16-6+squeeze12 (using .../apache2.2-bin_2.2.22-13+deb7u12_amd64.deb) ... Unpacking replacement apache2.2-bin ... Preparing to replace apache2-utils 2.2.16-6+squeeze12 (using .../apache2-utils_2.2.22-13+deb7u12_amd64.deb) ... Unpacking replacement apache2-utils ... Preparing to replace csh 20070713-2 (using .../csh_20110502-2_amd64.deb) ... Unpacking replacement csh ... Preparing to replace libmailtools-perl 2.06-1 (using .../libmailtools-perl_2.09-1_all.deb) ... Unpacking replacement libmailtools-perl ... Preparing to replace libparse-recdescent-perl 1.965001+dfsg-1 (using .../libparse-recdescent-perl_1.967009+dfsg-1_all.deb) ... Unpacking replacement libparse-recdescent-perl ... Preparing to replace libemboss-acd-perl 2.2.0-7 (using .../libemboss-acd-perl_2.2.0-7+deb7u1_all.deb) ... Unpacking replacement libemboss-acd-perl ... Preparing to replace emboss-explorer 2.2.0-7 (using .../emboss-explorer_2.2.0-7+deb7u1_all.deb) ... Unpacking replacement emboss-explorer ... Preparing to replace gcc-4.4-base 4.4.5-8 (using .../gcc-4.4-base_4.4.7-2_amd64.deb) ... Unpacking replacement gcc-4.4-base:amd64 ... Setting up libexpat1:amd64 (2.1.0-1+deb7u5) ... Setting up libfreetype6:amd64 (2.4.9-1.1+deb7u7) ... Setting up libjpeg8:amd64 (8d-1+deb7u1) ... Setting up libpng12-0:amd64 (1.2.49-1+deb7u2) ... Setting up libgd2-noxpm:amd64 (2.0.36~rc1~dfsg-6.1+deb7u11) ... Setting up libhpdf-2.2.1 (2.2.1-1) ... Setting up mysql-common (5.5.59-0+deb7u1) ... Setting up libmysqlclient18:amd64 (5.5.59-0+deb7u1) ... Setting up libkeyutils1:amd64 (1.5.5-3+deb7u1) ... Setting up libkrb5support0:amd64 (1.10.1+dfsg-5+deb7u9) ... Setting up libk5crypto3:amd64 (1.10.1+dfsg-5+deb7u9) ... Setting up libkrb5-3:amd64 (1.10.1+dfsg-5+deb7u9) ... Setting up libgssapi-krb5-2:amd64 (1.10.1+dfsg-5+deb7u9) ... Setting up libgpg-error0:amd64 (1.10-3.1) ... Setting up libgcrypt11:amd64 (1.5.0-5+deb7u6) ... Setting up libp11-kit0:amd64 (0.12-3) ... Setting up libtasn1-3:amd64 (2.13-2+deb7u5) ... Setting up libgnutls26:amd64 (2.12.20-8+deb7u5) ... Setting up libsasl2-2:amd64 (2.1.25.dfsg1-6+deb7u1) ... Setting up libldap-2.4-2:amd64 (2.4.31-2+deb7u3) ... Installing new version of config file /etc/ldap/ldap.conf ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb7u3) ... Setting up libpq5 (9.1.24lts2-0+deb7u2) ... Setting up emboss-lib (6.4.0-2) ... Setting up libxau6:amd64 (1:1.0.7-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1) ... Setting up libxcb1:amd64 (1.8.1-2+deb7u1) ... Setting up libx11-data (2:1.5.0-1+deb7u4) ... Setting up libx11-6:amd64 (2:1.5.0-1+deb7u4) ... Setting up emboss-data (6.4.0-2) ... Setting up emboss (6.4.0-2) ... Setting up libclass-isa-perl (0.36-3) ... Setting up libgdbm3:amd64 (1.8.3-11) ... Setting up libtext-charwidth-perl (0.04-7+b1) ... Setting up libtext-iconv-perl (1.7-5) ... Setting up liblocale-gettext-perl (1.05-7+b1) ... Setting up libncursesw5:amd64 (5.9-10) ... Setting up libprocps0:amd64 (1:3.3.3-3) ... Setting up mawk (1.3.3-17) ... Setting up libcap2:amd64 (1:2.22-1.2) ... Setting up libmagic1:amd64 (5.11-2+deb7u9) ... Setting up libpcre3:amd64 (1:8.30-5) ... Setting up libbsd0:amd64 (0.4.2-1) ... Setting up libjpeg62:amd64 (6b1-3+deb7u1) ... Setting up libsqlite3-0:amd64 (3.7.13-1+deb7u4) ... Setting up adduser (3.113+nmu3) ... Installing new version of config file /etc/deluser.conf ... Setting up procps (1:3.3.3-3) ... Installing new version of config file /etc/init.d/procps ... invoke-rc.d: policy-rc.d denied execution of start. Setting up debconf-i18n (1.5.49) ... Setting up mime-support (3.52-1+deb7u1) ... Installing new version of config file /etc/mime.types ... Setting up ucf (3.0025+nmu3) ... Setting up libapr1 (1.4.6-3+deb7u2) ... Setting up libaprutil1 (1.4.1-3+deb7u1) ... Setting up libaprutil1-ldap (1.4.1-3+deb7u1) ... Setting up libaprutil1-dbd-sqlite3 (1.4.1-3+deb7u1) ... Setting up apache2.2-bin (2.2.22-13+deb7u12) ... Setting up apache2-utils (2.2.22-13+deb7u12) ... Setting up csh (20110502-2) ... Setting up gcc-4.4-base:amd64 (4.4.7-2) ... Setting up libswitch-perl (2.16-2) ... Setting up perl-modules (5.14.2-21+deb7u5) ... Setting up perl (5.14.2-21+deb7u5) ... Setting up apache2.2-common (2.2.22-13+deb7u12) ... Installing new version of config file /etc/apache2/apache2.conf ... Installing new version of config file /etc/apache2/mods-available/disk_cache.conf ... Installing new version of config file /etc/apache2/mods-available/ssl.conf ... Installing new version of config file /etc/apache2/mods-available/mime.conf ... Installing new version of config file /etc/apache2/mods-available/alias.conf ... Installing new version of config file /etc/apache2/envvars ... Installing new version of config file /etc/apache2/conf.d/security ... Installing new version of config file /etc/init.d/apache2 ... Installing new version of config file /etc/logrotate.d/apache2 ... Remove obsolete configuration file /etc/apache2/httpd.conf Removing obsolete conffile /etc/apache2/mods-available/version.load ... Purging old mod_disk_cache cache data in /var/cache/apache2/mod_disk_cache Setting up apache2-mpm-worker (2.2.22-13+deb7u12) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up apache2 (2.2.22-13+deb7u12) ... Setting up libmailtools-perl (2.09-1) ... Setting up libparse-recdescent-perl (1.967009+dfsg-1) ... Setting up libemboss-acd-perl (2.2.0-7+deb7u1) ... Setting up emboss-explorer (2.2.0-7+deb7u1) ... invoke-rc.d: policy-rc.d denied execution of reload. 0m44.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-get', '-yf', 'dist-upgrade'] 0m44.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m45.7s DUMP: aa070cad8b3a1132a337357ab1f6d822 - 0m45.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m45.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-cache', 'show', 'emboss-explorer'] 0m45.7s DUMP: Package: emboss-explorer Version: 2.2.0-7+deb7u1 Installed-Size: 240 Maintainer: Debian-Med Packaging Team Architecture: all Depends: perl, libmailtools-perl, libemboss-acd-perl, emboss (>= 5.0.0), emboss-data, apache2 | httpd-cgi Recommends: emboss-doc Description: web-based GUI to EMBOSS Homepage: http://embossgui.sourceforge.net/ Description-md5: 69ac8116a4fb61d1250e6572c9186bdf Tag: biology::emboss, field::biology, field::biology:bioinformatics, implemented-in::perl, interface::web, role::plugin, suite::TODO, web::application, web::cgi Section: science Priority: optional Filename: pool/main/e/emboss-explorer/emboss-explorer_2.2.0-7+deb7u1_all.deb Size: 46616 MD5sum: 59aa1b3b5ca22396eea96b1de1ff0be2 SHA1: adc723fe2360c01e492392700d98fbe6a9e487e5 SHA256: 7c185788640dfd700e8fcaca40d07ce2e84375c75a8c465be3ee4bc2e792fc81 0m45.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-cache', 'show', 'emboss-explorer'] 0m45.7s INFO: apt-cache knows about the following packages: emboss-explorer 0m45.7s INFO: Running scripts pre_install 0m45.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_database-server'] 0m45.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_database-server'] 0m45.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_exceptions'] 0m45.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_exceptions'] 0m45.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_extras'] 0m45.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_extras'] 0m45.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_foreign_architecture'] 0m45.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_foreign_architecture'] 0m45.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m45.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m45.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-cache', 'policy'] 0m45.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ wheezy/updates/main amd64 Packages release v=7.0,o=Debian,a=oldoldstable,n=wheezy,l=Debian-Security,c=main origin security.debian.org 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m45.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-cache', 'policy'] 0m45.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-cache', 'policy', 'emboss-explorer'] 0m45.8s DUMP: emboss-explorer: Installed: 2.2.0-7+deb7u1 Candidate: 2.2.0-7+deb7u1 Version table: *** 2.2.0-7+deb7u1 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 100 /var/lib/dpkg/status 0m45.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-cache', 'policy', 'emboss-explorer'] 0m45.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-get', '-y', 'install', 'emboss-explorer'] 0m46.0s DUMP: Reading package lists... Building dependency tree... Reading state information... emboss-explorer is already the newest version. The following packages were automatically installed and are no longer required: csh libbsd0 libdb4.7 libjpeg62 libmagic1 libssl0.9.8 Use 'apt-get autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-get', '-y', 'install', 'emboss-explorer'] 0m46.0s INFO: Running scripts post_install 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_install_exceptions'] 0m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_install_exceptions'] 0m46.0s INFO: Running scripts post_distupgrade 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_distupgrade_exceptions'] 0m46.0s DUMP: FIXING /usr/share/keyrings/debian-archive-removed-keys.gpg~ `/usr/share/keyrings/debian-archive-removed-keys.gpg~' -> `/usr/share/keyrings/debian-archive-removed-keys.gpg' 0m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_distupgrade_exceptions'] 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m46.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_distupgrade_zz_backports'] 0m46.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_distupgrade_zz_backports'] 0m46.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp18Ndpf'] 0m46.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp18Ndpf'] 0m46.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp18Ndpf'] 0m47.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp18Ndpf'] 0m47.2s INFO: Running scripts pre_install 0m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_database-server'] 0m47.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_database-server'] 0m47.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_exceptions'] 0m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_exceptions'] 0m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_extras'] 0m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_extras'] 0m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_foreign_architecture'] 0m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-cache', 'policy'] 0m47.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ wheezy/updates/main amd64 Packages release v=7.0,o=Debian,a=oldoldstable,n=wheezy,l=Debian-Security,c=main origin security.debian.org 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-cache', 'policy'] 0m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-cache', 'policy', 'emboss-explorer'] 0m47.3s DUMP: emboss-explorer: Installed: 2.2.0-7+deb7u1 Candidate: 2.2.0-7+deb7u1 Version table: *** 2.2.0-7+deb7u1 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 100 /var/lib/dpkg/status 0m47.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-cache', 'policy', 'emboss-explorer'] 0m47.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-get', '-y', 'install', 'emboss-explorer=2.2.0-7+deb7u1'] 0m47.6s DUMP: Reading package lists... Building dependency tree... Reading state information... emboss-explorer is already the newest version. The following packages were automatically installed and are no longer required: csh libbsd0 libdb4.7 libjpeg62 libmagic1 libssl0.9.8 Use 'apt-get autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-get', '-y', 'install', 'emboss-explorer=2.2.0-7+deb7u1'] 0m47.6s INFO: Running scripts post_install 0m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_install_exceptions'] 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_install_exceptions'] 0m47.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp18Ndpf'] 0m48.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp18Ndpf'] 0m48.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m48.3s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed apache2 apache2 2.2.22-13+deb7u12 install ok installed apache2-mpm-worker apache2-mpm-worker 2.2.22-13+deb7u12 install ok installed apache2-utils apache2-utils 2.2.22-13+deb7u12 install ok installed apache2.2-bin apache2.2-bin 2.2.22-13+deb7u12 install ok installed apache2.2-common apache2.2-common 2.2.22-13+deb7u12 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u4 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed csh csh 20110502-2 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed emboss emboss 6.4.0-2 install ok installed emboss-data emboss-data 6.4.0-2 install ok installed emboss-explorer emboss-explorer 2.2.0-7+deb7u1 install ok installed emboss-lib emboss-lib 6.4.0-2 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.4-base:amd64 gcc-4.4-base 4.4.7-2 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u9 install ok installed gpgv gpgv 1.4.12-7+deb7u9 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 deinstall ok config-files libajax6 libajax6 6.1.0-5 install ok installed libapr1 libapr1 1.4.6-3+deb7u2 install ok installed libaprutil1 libaprutil1 1.4.1-3+deb7u1 install ok installed libaprutil1-dbd-sqlite3 libaprutil1-dbd-sqlite3 1.4.1-3+deb7u1 install ok installed libaprutil1-ldap libaprutil1-ldap 1.4.1-3+deb7u1 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbsd0:amd64 libbsd0 0.4.2-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u12 install ok installed libc6:amd64 libc6 2.13-38+deb7u12 install ok installed libcap2:amd64 libcap2 1:2.22-1.2 install ok installed libclass-isa-perl libclass-isa-perl 0.36-3 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb4.7 libdb4.7 4.7.25-9 install ok installed libdb4.8 libdb4.8 4.8.30-2 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5+deb7u1 install ok installed libemboss-acd-perl libemboss-acd-perl 2.2.0-7+deb7u1 install ok installed libexpat1:amd64 libexpat1 2.1.0-1+deb7u5 install ok installed libfreetype6:amd64 libfreetype6 2.4.9-1.1+deb7u7 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed libgcrypt11:amd64 libgcrypt11 1.5.0-5+deb7u6 install ok installed libgd2-noxpm:amd64 libgd2-noxpm 2.0.36~rc1~dfsg-6.1+deb7u11 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-11 install ok installed libgnutls26:amd64 libgnutls26 2.12.20-8+deb7u5 install ok installed libgpg-error0:amd64 libgpg-error0 1.10-3.1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.10.1+dfsg-5+deb7u9 install ok installed libhpdf-2.2.1 libhpdf-2.2.1 2.2.1-1 install ok installed libjpeg62:amd64 libjpeg62 6b1-3+deb7u1 install ok installed libjpeg8:amd64 libjpeg8 8d-1+deb7u1 install ok installed libk5crypto3:amd64 libk5crypto3 1.10.1+dfsg-5+deb7u9 install ok installed libkeyutils1:amd64 libkeyutils1 1.5.5-3+deb7u1 install ok installed libkrb5-3:amd64 libkrb5-3 1.10.1+dfsg-5+deb7u9 install ok installed libkrb5support0:amd64 libkrb5support0 1.10.1+dfsg-5+deb7u9 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.31-2+deb7u3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma2 liblzma2 5.0.0-2 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmagic1:amd64 libmagic1 5.11-2+deb7u9 install ok installed libmailtools-perl libmailtools-perl 2.09-1 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libmysqlclient18:amd64 libmysqlclient18 5.5.59-0+deb7u1 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libncursesw5:amd64 libncursesw5 5.9-10 deinstall ok config-files libnucleus6 libnucleus6 6.1.0-5 install ok installed libp11-kit0:amd64 libp11-kit0 0.12-3 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libparse-recdescent-perl libparse-recdescent-perl 1.967009+dfsg-1 install ok installed libpcre3:amd64 libpcre3 1:8.30-5 install ok installed libpng12-0:amd64 libpng12-0 1.2.49-1+deb7u2 install ok installed libpq5 libpq5 9.1.24lts2-0+deb7u2 install ok installed libprocps0:amd64 libprocps0 1:3.3.3-3 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.25.dfsg1-6+deb7u1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.7.13-1+deb7u4 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libssl0.9.8 libssl0.9.8 0.9.8o-4squeeze14 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb7u3 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libswitch-perl libswitch-perl 2.16-2 install ok installed libtasn1-3:amd64 libtasn1-3 2.13-2+deb7u5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtimedate-perl libtimedate-perl 1.2000-1 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed libx11-6:amd64 libx11-6 2:1.5.0-1+deb7u4 install ok installed libx11-data libx11-data 2:1.5.0-1+deb7u4 install ok installed libxau6:amd64 libxau6 1:1.0.7-1 install ok installed libxcb1:amd64 libxcb1 1.8.1-2+deb7u1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.1-1 install ok installed login login 1:4.1.5.1-1+deb7u1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mime-support mime-support 3.52-1+deb7u1 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u12 install ok installed mysql-common mysql-common 5.5.59-0+deb7u1 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1+deb7u1 install ok installed perl perl 5.14.2-21+deb7u5 install ok installed perl-base perl-base 5.14.2-21+deb7u5 install ok installed perl-modules perl-modules 5.14.2-21+deb7u5 install ok installed procps procps 1:3.3.3-3 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7+deb7u1 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1+deb7u1 install ok installed tzdata tzdata 2018c-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m48.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m49.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', '-ac', '--ignore-obsolete'] 0m50.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', '-ac', '--ignore-obsolete'] 0m50.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m51.0s DUMP: 0.15.1 0m51.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m51.0s INFO: Running adequate version 0.15.1 now. 0m51.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'emboss-explorer'] 0m51.0s DUMP: emboss-explorer: broken-symlink /usr/share/doc/emboss-explorer/html -> ../../EMBOSS/doc/html/emboss/apps 0m51.0s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'emboss-explorer'] 0m51.0s ERROR: WARN: Inadequate results from running adequate! emboss-explorer: broken-symlink /usr/share/doc/emboss-explorer/html -> ../../EMBOSS/doc/html/emboss/apps 0m51.0s ERROR: WARN: Running adequate resulted in less interesting tags found: broken-symlink 0m51.0s INFO: Running scripts pre_remove 0m51.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m52.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m52.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m52.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m52.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m52.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m52.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_remove_exceptions'] 0m52.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/pre_remove_exceptions'] 0m52.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-get', 'remove', 'libnucleus6', 'libapr1', 'libfreetype6:amd64', 'apache2-utils', 'libgssapi-krb5-2:amd64', 'libx11-data', 'libgcrypt11:amd64', 'gcc-4.4-base:amd64', 'libgd2-noxpm:amd64', 'libx11-6:amd64', 'libmailtools-perl', 'libjpeg8:amd64', 'libmagic1:amd64', 'libtasn1-3:amd64', 'emboss', 'libsqlite3-0:amd64', 'libclass-isa-perl', 'apache2.2-bin', 'libaprutil1', 'perl-modules', 'csh', 'libkrb5support0:amd64', 'apache2-mpm-worker', 'apache2.2-common', 'libssl1.0.0:amd64', 'libgdbm3:amd64', 'libparse-recdescent-perl', 'libpcre3:amd64', 'emboss-data', 'libhpdf-2.2.1', 'libssl0.9.8', 'libkeyutils1:amd64', 'libcap2:amd64', 'libtimedate-perl', 'libxcb1:amd64', 'libbsd0:amd64', 'libexpat1:amd64', 'libaprutil1-ldap', 'libxdmcp6:amd64', 'libpq5', 'libkrb5-3:amd64', 'libxau6:amd64', 'perl', 'libaprutil1-dbd-sqlite3', 'libpng12-0:amd64', 'libmysqlclient18:amd64', 'libemboss-acd-perl', 'mime-support', 'libp11-kit0:amd64', 'libjpeg62:amd64', 'emboss-lib', 'libgnutls26:amd64', 'libajax6', 'libgpg-error0:amd64', 'libswitch-perl', 'libk5crypto3:amd64', 'libncursesw5:amd64', 'libldap-2.4-2:amd64', 'libdb4.7', 'libsasl2-2:amd64', 'apache2', 'libdb4.8', 'libprocps0:amd64', 'procps', 'mysql-common', 'emboss-explorer'] 0m55.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Package 'libajax6' is not installed, so not removed Package 'libnucleus6' is not installed, so not removed The following packages will be REMOVED: apache2 apache2-mpm-worker apache2-utils apache2.2-bin apache2.2-common csh emboss emboss-data emboss-explorer emboss-lib gcc-4.4-base libapr1 libaprutil1 libaprutil1-dbd-sqlite3 libaprutil1-ldap libbsd0 libcap2 libclass-isa-perl libdb4.7 libdb4.8 libemboss-acd-perl libexpat1 libfreetype6 libgcrypt11 libgd2-noxpm libgdbm3 libgnutls26 libgpg-error0 libgssapi-krb5-2 libhpdf-2.2.1 libjpeg62 libjpeg8 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libmagic1 libmailtools-perl libmysqlclient18 libncursesw5 libp11-kit0 libparse-recdescent-perl libpcre3 libpng12-0 libpq5 libprocps0 libsasl2-2 libsqlite3-0 libssl0.9.8 libssl1.0.0 libswitch-perl libtasn1-3 libtimedate-perl libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 mime-support mysql-common perl perl-modules procps 0 upgraded, 0 newly installed, 64 to remove and 0 not upgraded. After this operation, 402 MB disk space will be freed. (Reading database ... 11720 files and directories currently installed.) Removing apache2 ... Removing emboss-explorer ... Removing apache2-mpm-worker ... invoke-rc.d: policy-rc.d denied execution of stop. Removing apache2.2-common ... Removing apache2-utils ... Removing apache2.2-bin ... Removing csh ... Removing emboss ... Removing emboss-data ... Removing emboss-lib ... Removing gcc-4.4-base:amd64 ... Removing libaprutil1-ldap ... Removing libaprutil1-dbd-sqlite3 ... Removing libaprutil1 ... Removing libapr1 ... Removing libbsd0:amd64 ... Removing libcap2:amd64 ... Removing libmailtools-perl ... Removing libtimedate-perl ... Removing libemboss-acd-perl ... Removing libparse-recdescent-perl ... Removing libdb4.7 ... Removing libdb4.8 ... Removing libexpat1:amd64 ... Removing libgd2-noxpm:amd64 ... Removing libfreetype6:amd64 ... Removing libpq5 ... Removing libldap-2.4-2:amd64 ... Removing libgnutls26:amd64 ... Removing libgcrypt11:amd64 ... Removing libgpg-error0:amd64 ... Removing libgssapi-krb5-2:amd64 ... Removing libhpdf-2.2.1 ... Removing libjpeg62:amd64 ... Removing libjpeg8:amd64 ... Removing libkrb5-3:amd64 ... Removing libk5crypto3:amd64 ... Removing libkrb5support0:amd64 ... Removing libkeyutils1:amd64 ... Removing libmagic1:amd64 ... Removing libmysqlclient18:amd64 ... Removing procps ... invoke-rc.d: policy-rc.d denied execution of stop. Removing libncursesw5:amd64 ... Removing libp11-kit0:amd64 ... Removing libpcre3:amd64 ... Removing libpng12-0:amd64 ... Removing libprocps0:amd64 ... Removing libsasl2-2:amd64 ... Removing libsqlite3-0:amd64 ... Removing libssl0.9.8 ... Removing libssl1.0.0:amd64 ... Removing libtasn1-3:amd64 ... Removing libx11-6:amd64 ... Removing libx11-data ... Removing libxcb1:amd64 ... Removing libxau6:amd64 ... Removing libxdmcp6:amd64 ... Removing mime-support ... Removing mysql-common ... Removing perl ... Removing perl-modules ... Removing libswitch-perl ... Removing libclass-isa-perl ... Removing libgdbm3:amd64 ... 0m55.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-get', 'remove', 'libnucleus6', 'libapr1', 'libfreetype6:amd64', 'apache2-utils', 'libgssapi-krb5-2:amd64', 'libx11-data', 'libgcrypt11:amd64', 'gcc-4.4-base:amd64', 'libgd2-noxpm:amd64', 'libx11-6:amd64', 'libmailtools-perl', 'libjpeg8:amd64', 'libmagic1:amd64', 'libtasn1-3:amd64', 'emboss', 'libsqlite3-0:amd64', 'libclass-isa-perl', 'apache2.2-bin', 'libaprutil1', 'perl-modules', 'csh', 'libkrb5support0:amd64', 'apache2-mpm-worker', 'apache2.2-common', 'libssl1.0.0:amd64', 'libgdbm3:amd64', 'libparse-recdescent-perl', 'libpcre3:amd64', 'emboss-data', 'libhpdf-2.2.1', 'libssl0.9.8', 'libkeyutils1:amd64', 'libcap2:amd64', 'libtimedate-perl', 'libxcb1:amd64', 'libbsd0:amd64', 'libexpat1:amd64', 'libaprutil1-ldap', 'libxdmcp6:amd64', 'libpq5', 'libkrb5-3:amd64', 'libxau6:amd64', 'perl', 'libaprutil1-dbd-sqlite3', 'libpng12-0:amd64', 'libmysqlclient18:amd64', 'libemboss-acd-perl', 'mime-support', 'libp11-kit0:amd64', 'libjpeg62:amd64', 'emboss-lib', 'libgnutls26:amd64', 'libajax6', 'libgpg-error0:amd64', 'libswitch-perl', 'libk5crypto3:amd64', 'libncursesw5:amd64', 'libldap-2.4-2:amd64', 'libdb4.7', 'libsasl2-2:amd64', 'apache2', 'libdb4.8', 'libprocps0:amd64', 'procps', 'mysql-common', 'emboss-explorer'] 0m55.5s INFO: Running scripts post_remove 0m55.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_remove_exceptions'] 0m55.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_remove_exceptions'] 0m55.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'dpkg', '--purge', 'libnucleus6', 'libapr1', 'libfreetype6:amd64', 'apache2-utils', 'libgssapi-krb5-2:amd64', 'libx11-data', 'libgcrypt11:amd64', 'gcc-4.4-base:amd64', 'libgd2-noxpm:amd64', 'libx11-6:amd64', 'libmailtools-perl', 'libjpeg8:amd64', 'libmagic1:amd64', 'libtasn1-3:amd64', 'emboss', 'libsqlite3-0:amd64', 'libclass-isa-perl', 'apache2.2-bin', 'libaprutil1', 'perl-modules', 'csh', 'libkrb5support0:amd64', 'apache2-mpm-worker', 'apache2.2-common', 'libssl1.0.0:amd64', 'libgdbm3:amd64', 'libparse-recdescent-perl', 'libpcre3:amd64', 'emboss-data', 'libhpdf-2.2.1', 'libssl0.9.8', 'libkeyutils1:amd64', 'libcap2:amd64', 'libtimedate-perl', 'libxcb1:amd64', 'libbsd0:amd64', 'libexpat1:amd64', 'libaprutil1-ldap', 'libxdmcp6:amd64', 'libpq5', 'libkrb5-3:amd64', 'libxau6:amd64', 'perl', 'libaprutil1-dbd-sqlite3', 'libpng12-0:amd64', 'libmysqlclient18:amd64', 'libemboss-acd-perl', 'mime-support', 'libp11-kit0:amd64', 'libjpeg62:amd64', 'emboss-lib', 'libgnutls26:amd64', 'libajax6', 'libgpg-error0:amd64', 'libswitch-perl', 'libk5crypto3:amd64', 'libncursesw5:amd64', 'libldap-2.4-2:amd64', 'libdb4.7', 'libsasl2-2:amd64', 'apache2', 'libdb4.8', 'libprocps0:amd64', 'procps', 'mysql-common'] 0m56.1s DUMP: (Reading database ... 6932 files and directories currently installed.) Removing libnucleus6 ... Purging configuration files for libnucleus6 ... Removing libapr1 ... Purging configuration files for libapr1 ... Removing libfreetype6:amd64 ... Purging configuration files for libfreetype6:amd64 ... dpkg: warning: ignoring request to remove apache2-utils which isn't installed Removing libgssapi-krb5-2:amd64 ... Purging configuration files for libgssapi-krb5-2:amd64 ... dpkg: warning: ignoring request to remove libx11-data which isn't installed Removing libgcrypt11:amd64 ... Purging configuration files for libgcrypt11:amd64 ... dpkg: warning: ignoring request to remove gcc-4.4-base which isn't installed Removing libgd2-noxpm:amd64 ... Purging configuration files for libgd2-noxpm:amd64 ... Removing libx11-6:amd64 ... Purging configuration files for libx11-6:amd64 ... dpkg: warning: ignoring request to remove libmailtools-perl which isn't installed dpkg: warning: ignoring request to remove libjpeg8 which isn't installed Removing libmagic1:amd64 ... Purging configuration files for libmagic1:amd64 ... Removing libtasn1-3:amd64 ... Purging configuration files for libtasn1-3:amd64 ... Removing emboss ... Purging configuration files for emboss ... Removing libsqlite3-0:amd64 ... Purging configuration files for libsqlite3-0:amd64 ... dpkg: warning: ignoring request to remove libclass-isa-perl which isn't installed dpkg: warning: ignoring request to remove apache2.2-bin which isn't installed Removing libaprutil1 ... Purging configuration files for libaprutil1 ... Removing perl-modules ... Purging configuration files for perl-modules ... Removing csh ... Purging configuration files for csh ... Removing libkrb5support0:amd64 ... Purging configuration files for libkrb5support0:amd64 ... dpkg: warning: ignoring request to remove apache2-mpm-worker which isn't installed Removing apache2.2-common ... Purging configuration files for apache2.2-common ... Removing libssl1.0.0:amd64 ... Purging configuration files for libssl1.0.0:amd64 ... Removing libgdbm3:amd64 ... Purging configuration files for libgdbm3:amd64 ... dpkg: warning: ignoring request to remove libparse-recdescent-perl which isn't installed Removing libpcre3:amd64 ... Purging configuration files for libpcre3:amd64 ... dpkg: warning: ignoring request to remove emboss-data which isn't installed Removing libhpdf-2.2.1 ... Purging configuration files for libhpdf-2.2.1 ... Removing libssl0.9.8 ... Purging configuration files for libssl0.9.8 ... Removing libkeyutils1:amd64 ... Purging configuration files for libkeyutils1:amd64 ... Removing libcap2:amd64 ... Purging configuration files for libcap2:amd64 ... dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed Removing libxcb1:amd64 ... Purging configuration files for libxcb1:amd64 ... Removing libbsd0:amd64 ... Purging configuration files for libbsd0:amd64 ... Removing libexpat1:amd64 ... Purging configuration files for libexpat1:amd64 ... dpkg: warning: ignoring request to remove libaprutil1-ldap which isn't installed Removing libxdmcp6:amd64 ... Purging configuration files for libxdmcp6:amd64 ... Removing libpq5 ... Purging configuration files for libpq5 ... Removing libkrb5-3:amd64 ... Purging configuration files for libkrb5-3:amd64 ... Removing libxau6:amd64 ... Purging configuration files for libxau6:amd64 ... dpkg: warning: ignoring request to remove perl which isn't installed dpkg: warning: ignoring request to remove libaprutil1-dbd-sqlite3 which isn't installed Removing libpng12-0:amd64 ... Purging configuration files for libpng12-0:amd64 ... Removing libmysqlclient18:amd64 ... Purging configuration files for libmysqlclient18:amd64 ... dpkg: warning: ignoring request to remove libemboss-acd-perl which isn't installed Removing mime-support ... Purging configuration files for mime-support ... Removing libp11-kit0:amd64 ... Purging configuration files for libp11-kit0:amd64 ... dpkg: warning: ignoring request to remove libjpeg62 which isn't installed Removing emboss-lib ... Purging configuration files for emboss-lib ... Removing libgnutls26:amd64 ... Purging configuration files for libgnutls26:amd64 ... Removing libajax6 ... Purging configuration files for libajax6 ... Removing libgpg-error0:amd64 ... Purging configuration files for libgpg-error0:amd64 ... dpkg: warning: ignoring request to remove libswitch-perl which isn't installed Removing libk5crypto3:amd64 ... Purging configuration files for libk5crypto3:amd64 ... Removing libncursesw5:amd64 ... Purging configuration files for libncursesw5:amd64 ... Removing libldap-2.4-2:amd64 ... Purging configuration files for libldap-2.4-2:amd64 ... dpkg: warning: ignoring request to remove libdb4.7 which isn't installed Removing libsasl2-2:amd64 ... Purging configuration files for libsasl2-2:amd64 ... dpkg: warning: ignoring request to remove apache2 which isn't installed dpkg: warning: ignoring request to remove libdb4.8 which isn't installed Removing libprocps0:amd64 ... Purging configuration files for libprocps0:amd64 ... Removing procps ... Purging configuration files for procps ... Removing mysql-common ... Purging configuration files for mysql-common ... 0m56.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'dpkg', '--purge', 'libnucleus6', 'libapr1', 'libfreetype6:amd64', 'apache2-utils', 'libgssapi-krb5-2:amd64', 'libx11-data', 'libgcrypt11:amd64', 'gcc-4.4-base:amd64', 'libgd2-noxpm:amd64', 'libx11-6:amd64', 'libmailtools-perl', 'libjpeg8:amd64', 'libmagic1:amd64', 'libtasn1-3:amd64', 'emboss', 'libsqlite3-0:amd64', 'libclass-isa-perl', 'apache2.2-bin', 'libaprutil1', 'perl-modules', 'csh', 'libkrb5support0:amd64', 'apache2-mpm-worker', 'apache2.2-common', 'libssl1.0.0:amd64', 'libgdbm3:amd64', 'libparse-recdescent-perl', 'libpcre3:amd64', 'emboss-data', 'libhpdf-2.2.1', 'libssl0.9.8', 'libkeyutils1:amd64', 'libcap2:amd64', 'libtimedate-perl', 'libxcb1:amd64', 'libbsd0:amd64', 'libexpat1:amd64', 'libaprutil1-ldap', 'libxdmcp6:amd64', 'libpq5', 'libkrb5-3:amd64', 'libxau6:amd64', 'perl', 'libaprutil1-dbd-sqlite3', 'libpng12-0:amd64', 'libmysqlclient18:amd64', 'libemboss-acd-perl', 'mime-support', 'libp11-kit0:amd64', 'libjpeg62:amd64', 'emboss-lib', 'libgnutls26:amd64', 'libajax6', 'libgpg-error0:amd64', 'libswitch-perl', 'libk5crypto3:amd64', 'libncursesw5:amd64', 'libldap-2.4-2:amd64', 'libdb4.7', 'libsasl2-2:amd64', 'apache2', 'libdb4.8', 'libprocps0:amd64', 'procps', 'mysql-common'] 0m56.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'dpkg', '--purge', 'emboss-explorer'] 0m56.1s DUMP: (Reading database ... 6801 files and directories currently installed.) Removing emboss-explorer ... Purging configuration files for emboss-explorer ... 0m56.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'dpkg', '--purge', 'emboss-explorer'] 0m56.1s INFO: Running scripts post_purge 0m56.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_purge_exceptions'] 0m56.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_purge_exceptions'] 0m56.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'dpkg', '--purge', '--pending'] 0m56.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'dpkg', '--purge', '--pending'] 0m56.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'dpkg', '--remove', '--pending'] 0m56.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'dpkg', '--remove', '--pending'] 0m56.2s INFO: Running scripts post_test 0m56.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_test_exceptions'] 0m56.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'tmp/scripts/post_test_exceptions'] 0m56.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp18Ndpf'] 0m56.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp18Ndpf'] 0m56.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'dpkg-divert', '--list'] 0m56.6s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m56.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'dpkg-divert', '--list'] 0m56.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-get', 'clean'] 0m56.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp18Ndpf', 'apt-get', 'clean'] 0m56.7s DEBUG: Recording chroot state 0m57.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp18Ndpf/dev/shm'] 0m58.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp18Ndpf/dev/shm'] 0m58.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp18Ndpf/dev/console'] 0m58.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp18Ndpf/dev/console'] 0m58.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp18Ndpf/dev/ptmx'] 0m58.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp18Ndpf/dev/ptmx'] 0m58.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp18Ndpf/dev/pts'] 0m58.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp18Ndpf/dev/pts'] 0m58.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp18Ndpf/proc'] 0m58.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp18Ndpf/proc'] 0m58.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp18Ndpf'] 0m58.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp18Ndpf'] 0m58.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp18Ndpf 0m58.2s INFO: PASS: Upgrading between Debian distributions. 0m58.2s INFO: PASS: All tests. 0m58.2s INFO: piuparts run ends. ret=0 End: 2018-02-26 20:47:57 UTC