Start: 2017-12-23 11:33:06 UTC [squeeze] Package: gromacs-openmpi Priority: extra Section: science Installed-Size: 8396 Maintainer: Debichem Team Architecture: amd64 Source: gromacs Version: 4.0.7-3 Depends: libc6 (>= 2.7), libfftw3-3, libopenmpi1.3, openmpi-bin (>= 1.2.3) Recommends: gromacs Suggests: gromacs-data Filename: pool/main/g/gromacs/gromacs-openmpi_4.0.7-3_amd64.deb Size: 2440046 MD5sum: ff4e85e9f39da5031f7011c76971eae5 SHA1: 0deb36ff27ea7e497aedfc91e07ac7c635b2ac60 SHA256: ade62e1254f52f56db7509bc6d2fb22f3c0ee39874a50d5b17c5504959bf9e84 Description: Molecular dynamics sim, binaries for OpenMPI parallelization GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains only the core simulation engine with parallel support using the OpenMPI interface. It is suitable for nodes of a processing cluster, or for multiprocessor machines. Homepage: http://www.gromacs.org/ Tag: devel::lang:c, devel::library, field::biology, field::chemistry, implemented-in::c, interface::commandline, role::devel-lib, role::program, scope::utility, works-with::software:package [wheezy-lts] Package: gromacs-openmpi Source: gromacs Version: 4.5.5-2 Installed-Size: 12800 Maintainer: Debichem Team Architecture: amd64 Replaces: gromacs-lam Depends: libc6 (>= 2.11), libfftw3-3, libopenmpi1.3, libxml2 (>= 2.7.4), openmpi-bin (>= 1.2.3) Recommends: gromacs Suggests: gromacs-data Description: Molecular dynamics sim, binaries for OpenMPI parallelization Homepage: http://www.gromacs.org/ Description-md5: c30854a1f128b7a83468fdd24f8edbc3 Tag: devel::lang:c, devel::library, field::biology, field::chemistry, implemented-in::c, interface::commandline, role::devel-lib, role::program, scope::utility, works-with::software:package Section: science Priority: extra Filename: pool/main/g/gromacs/gromacs-openmpi_4.5.5-2_amd64.deb Size: 6229088 MD5sum: 4e1d28f4cd733328c62ae2bd35675799 SHA1: 12da1dc4f73d911a06d9c61ae9cea02c542bd2d2 SHA256: 4a6206e6fae5678c954ecdfe11e86f1ba2729dfb09bfd30a6e2775290e8b4a56 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --no-check-valid-until --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze -d wheezy-lts -B reference-chroot-metadata.dat --apt gromacs-openmpi=4.5.5-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.83~201712142018~0.82-32-ge0ca5430 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --no-check-valid-until --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze -d wheezy-lts -B reference-chroot-metadata.dat --apt gromacs-openmpi=4.5.5-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.9.0-4-amd64 #1 SMP Debian 4.9.65-3 (2017-12-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp8C8YDs 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp8C8YDs 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.7s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp8C8YDs/proc'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp8C8YDs/proc'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp8C8YDs/dev/pts'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp8C8YDs/dev/pts'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp8C8YDs/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp8C8YDs/dev/ptmx'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp8C8YDs/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp8C8YDs/dev/ptmx'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp8C8YDs/dev/console'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp8C8YDs/dev/console'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp8C8YDs/dev/shm'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp8C8YDs/dev/shm'] 0m1.7s DEBUG: sources.list: deb http://archive.debian.org/debian squeeze main 0m1.7s DEBUG: Created policy-rc.d and chmodded it. 0m1.7s DEBUG: Created resolv.conf. 0m1.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp8C8YDs/tmp/scripts/ 0m1.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts-wheezy to /srv/piuparts.debian.org/tmp/tmp8C8YDs/tmp/scripts/ 0m1.7s INFO: Running scripts post_chroot_unpack 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-get', 'update'] 0m1.8s DUMP: Hit http://archive.debian.org squeeze Release.gpg Ign http://archive.debian.org/debian/ squeeze/main Translation-en Hit http://archive.debian.org squeeze Release Hit http://archive.debian.org squeeze/main amd64 Packages Reading package lists... 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-get', 'update'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-get', '-yf', 'dist-upgrade'] 0m1.9s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-get', '-yf', 'dist-upgrade'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.1s DUMP: 6a0e4d3b374fdc6be02fc5f39fbf3166 - 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.1s INFO: Running scripts post_setup 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_setup_dummy_users'] 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_setup_dummy_users'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_setup_forbid_home'] 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_setup_forbid_home'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_setup_minimize'] 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_setup_minimize'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m3.0s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 320 kB of archives. After this operation, 1532 kB of additional disk space will be used. Get:1 http://archive.debian.org/debian/ squeeze/main adduser all 3.112+nmu2 [250 kB] Get:2 http://archive.debian.org/debian/ squeeze/main ucf all 3.0025+nmu1 [69.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 320 kB in 0s (30.3 MB/s) Selecting previously deselected package adduser. (Reading database ... 6138 files and directories currently installed.) Unpacking adduser (from .../adduser_3.112+nmu2_all.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu1_all.deb) ... Moving old data out of the way Setting up adduser (3.112+nmu2) ... Setting up ucf (3.0025+nmu1) ... 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_setup_zz_backports'] 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_setup_zz_backports'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.0s DUMP: install ok installed adduser 3.112+nmu2 install ok installed apt 0.8.10.3+squeeze1 install ok installed base-files 6.0squeeze10 install ok installed base-passwd 3.5.22 install ok installed bash 4.1-3 install ok installed bsdutils 1:2.17.2-9 install ok installed coreutils 8.5-1 install ok installed dash 0.5.5.1-7.4 install ok installed debconf 1.5.36.1 install ok installed debconf-i18n 1.5.36.1 install ok installed debian-archive-keyring 2010.08.28+squeeze1 install ok installed debianutils 3.4 install ok installed diffutils 1:3.0-1 install ok installed dpkg 1.15.11 install ok installed e2fslibs 1.41.12-4stable1 install ok installed e2fsprogs 1.41.12-4stable1 install ok installed findutils 4.4.2-1+b1 install ok installed gcc-4.4-base 4.4.5-8 install ok installed gnupg 1.4.10-4+squeeze4 install ok installed gpgv 1.4.10-4+squeeze4 install ok installed grep 2.6.3-3+squeeze1 install ok installed gzip 1.3.12-9+squeeze1 install ok installed hostname 3.04 install ok installed initscripts 2.88dsf-13.1+squeeze1 install ok installed insserv 1.14.0-2 install ok installed libacl1 2.2.49-4 install ok installed libattr1 1:2.4.44-2 install ok installed libblkid1 2.17.2-9 install ok installed libbz2-1.0 1.0.5-6+squeeze1 install ok installed libc-bin 2.11.3-4 install ok installed libc6 2.11.3-4 install ok installed libcomerr2 1.41.12-4stable1 install ok installed libdb4.8 4.8.30-2 install ok installed libgcc1 1:4.4.5-8 install ok installed liblocale-gettext-perl 1.05-6 install ok installed liblzma2 5.0.0-2 install ok installed libncurses5 5.7+20100313-5 install ok installed libpam-modules 1.1.1-6.1+squeeze1 install ok installed libpam-runtime 1.1.1-6.1+squeeze1 install ok installed libpam0g 1.1.1-6.1+squeeze1 install ok installed libreadline6 6.1-3 install ok installed libselinux1 2.0.96-1 install ok installed libsepol1 2.0.41-1 install ok installed libslang2 2.2.2-4 install ok installed libss2 1.41.12-4stable1 install ok installed libstdc++6 4.4.5-8 install ok installed libtext-charwidth-perl 0.04-6 install ok installed libtext-iconv-perl 1.7-2 install ok installed libtext-wrapi18n-perl 0.06-7 install ok installed libusb-0.1-4 2:0.1.12-16 install ok installed libuuid1 2.17.2-9 install ok installed login 1:4.1.4.2+svn3283-2+squeeze1 install ok installed lsb-base 3.2-23.2squeeze1 install ok installed mawk 1.3.3-15 install ok installed mount 2.17.2-9 install ok installed ncurses-base 5.7+20100313-5 install ok installed ncurses-bin 5.7+20100313-5 install ok installed passwd 1:4.1.4.2+svn3283-2+squeeze1 install ok installed perl-base 5.10.1-17squeeze6 install ok installed readline-common 6.1-3 install ok installed sed 4.2.1-7 install ok installed sensible-utils 0.0.4 install ok installed sysv-rc 2.88dsf-13.1+squeeze1 install ok installed sysvinit 2.88dsf-13.1+squeeze1 install ok installed sysvinit-utils 2.88dsf-13.1+squeeze1 install ok installed tar 1.23-3 install ok installed tzdata 2014e-0squeeze1 install ok installed ucf 3.0025+nmu1 install ok installed util-linux 2.17.2-9 install ok installed xz-utils 5.0.0-2 install ok installed zlib1g 1:1.2.3.4.dfsg-3 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.0s DEBUG: Loading chroot meta data from reference-chroot-metadata.dat 0m3.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8C8YDs'] 0m3.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8C8YDs'] 0m3.8s INFO: Running scripts is_testable 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/is_testable_uninstallable'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/is_testable_uninstallable'] 0m3.8s INFO: Running scripts pre_test 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_test_exceptions'] 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_test_exceptions'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_test_root_password'] 0m3.8s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_test_root_password'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-cache', 'show', 'gromacs-openmpi'] 0m3.8s DUMP: Package: gromacs-openmpi Priority: extra Section: science Installed-Size: 8396 Maintainer: Debichem Team Architecture: amd64 Source: gromacs Version: 4.0.7-3 Depends: libc6 (>= 2.7), libfftw3-3, libopenmpi1.3, openmpi-bin (>= 1.2.3) Recommends: gromacs Suggests: gromacs-data Filename: pool/main/g/gromacs/gromacs-openmpi_4.0.7-3_amd64.deb Size: 2440046 MD5sum: ff4e85e9f39da5031f7011c76971eae5 SHA1: 0deb36ff27ea7e497aedfc91e07ac7c635b2ac60 SHA256: ade62e1254f52f56db7509bc6d2fb22f3c0ee39874a50d5b17c5504959bf9e84 Description: Molecular dynamics sim, binaries for OpenMPI parallelization GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains only the core simulation engine with parallel support using the OpenMPI interface. It is suitable for nodes of a processing cluster, or for multiprocessor machines. Homepage: http://www.gromacs.org/ Tag: devel::lang:c, devel::library, field::biology, field::chemistry, implemented-in::c, interface::commandline, role::devel-lib, role::program, scope::utility, works-with::software:package 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-cache', 'show', 'gromacs-openmpi'] 0m3.8s INFO: apt-cache knows about the following packages: gromacs-openmpi 0m3.8s INFO: Running scripts pre_install 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_database-server'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_database-server'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_exceptions'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_exceptions'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_extras'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_extras'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-cache', 'policy'] 0m3.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://archive.debian.org/debian/ squeeze/main amd64 Packages release v=6.0.10,o=Debian,a=oldoldstable,n=squeeze,l=Debian,c=main origin archive.debian.org Pinned packages: 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-cache', 'policy'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-cache', 'policy', 'gromacs-openmpi'] 0m3.9s DUMP: gromacs-openmpi: Installed: (none) Candidate: 4.0.7-3 Version table: 4.0.7-3 0 500 http://archive.debian.org/debian/ squeeze/main amd64 Packages 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-cache', 'policy', 'gromacs-openmpi'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-get', '-y', 'install', 'gromacs-openmpi'] 0m4.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libfftw3-3 libgfortran3 libibverbs1 libnuma1 libopenmpi1.3 libtorque2 openmpi-bin openmpi-common Suggested packages: gromacs-data libfftw3-dev gfortran Recommended packages: gromacs openmpi-checkpoint The following NEW packages will be installed: gromacs-openmpi libfftw3-3 libgfortran3 libibverbs1 libnuma1 libopenmpi1.3 libtorque2 openmpi-bin openmpi-common 0 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. Need to get 5961 kB of archives. After this operation, 18.4 MB of additional disk space will be used. Get:1 http://archive.debian.org/debian/ squeeze/main libfftw3-3 amd64 3.2.2-1 [1399 kB] Get:2 http://archive.debian.org/debian/ squeeze/main libgfortran3 amd64 4.4.5-8 [291 kB] Get:3 http://archive.debian.org/debian/ squeeze/main libnuma1 amd64 2.0.5-1 [26.7 kB] Get:4 http://archive.debian.org/debian/ squeeze/main libtorque2 amd64 2.4.8+dfsg-9squeeze4 [115 kB] Get:5 http://archive.debian.org/debian/ squeeze/main libibverbs1 amd64 1.1.3-2 [33.7 kB] Get:6 http://archive.debian.org/debian/ squeeze/main libopenmpi1.3 amd64 1.4.2-4 [1400 kB] Get:7 http://archive.debian.org/debian/ squeeze/main openmpi-common all 1.4.2-4 [89.5 kB] Get:8 http://archive.debian.org/debian/ squeeze/main openmpi-bin amd64 1.4.2-4 [165 kB] Get:9 http://archive.debian.org/debian/ squeeze/main gromacs-openmpi amd64 4.0.7-3 [2440 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5961 kB in 0s (30.2 MB/s) Selecting previously deselected package libfftw3-3. (Reading database ... 6261 files and directories currently installed.) Unpacking libfftw3-3 (from .../libfftw3-3_3.2.2-1_amd64.deb) ... Selecting previously deselected package libgfortran3. Unpacking libgfortran3 (from .../libgfortran3_4.4.5-8_amd64.deb) ... Selecting previously deselected package libnuma1. Unpacking libnuma1 (from .../libnuma1_2.0.5-1_amd64.deb) ... Selecting previously deselected package libtorque2. Unpacking libtorque2 (from .../libtorque2_2.4.8+dfsg-9squeeze4_amd64.deb) ... Selecting previously deselected package libibverbs1. Unpacking libibverbs1 (from .../libibverbs1_1.1.3-2_amd64.deb) ... Selecting previously deselected package libopenmpi1.3. Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.2-4_amd64.deb) ... Selecting previously deselected package openmpi-common. Unpacking openmpi-common (from .../openmpi-common_1.4.2-4_all.deb) ... Selecting previously deselected package openmpi-bin. Unpacking openmpi-bin (from .../openmpi-bin_1.4.2-4_amd64.deb) ... Selecting previously deselected package gromacs-openmpi. Unpacking gromacs-openmpi (from .../gromacs-openmpi_4.0.7-3_amd64.deb) ... Setting up libfftw3-3 (3.2.2-1) ... Setting up libgfortran3 (4.4.5-8) ... Setting up libnuma1 (2.0.5-1) ... Setting up libtorque2 (2.4.8+dfsg-9squeeze4) ... Setting up libibverbs1 (1.1.3-2) ... Setting up libopenmpi1.3 (1.4.2-4) ... Setting up openmpi-common (1.4.2-4) ... Setting up openmpi-bin (1.4.2-4) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode. Setting up gromacs-openmpi (4.0.7-3) ... update-alternatives: using /usr/bin/mdrun_mpi.openmpi to provide /usr/bin/mdrun_mpi (mdrun_mpi) in auto mode. 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-get', '-y', 'install', 'gromacs-openmpi'] 0m4.7s INFO: Running scripts post_install 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_install_exceptions'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_install_exceptions'] 0m4.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8C8YDs'] 0m5.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8C8YDs'] 0m5.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp8C8YDs to wheezy-lts 0m5.0s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ wheezy main deb http://security.debian.org wheezy/updates main 0m5.0s INFO: Running scripts pre_distupgrade 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_distupgrade_exceptions'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_distupgrade_exceptions'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_distupgrade_wheezy'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_distupgrade_wheezy'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-get', 'update'] 0m6.3s DUMP: Get:1 http://mirror-ubc.debian.org wheezy Release.gpg [2373 B] Ign http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en Get:2 http://mirror-ubc.debian.org wheezy Release [191 kB] Get:3 http://mirror-ubc.debian.org wheezy/main amd64 Packages [7634 kB] Get:4 http://security.debian.org wheezy/updates Release.gpg [1601 B] Ign http://security.debian.org/ wheezy/updates/main Translation-en Get:5 http://security.debian.org wheezy/updates Release [39.0 kB] Get:6 http://security.debian.org wheezy/updates/main amd64 Packages [751 kB] Fetched 8619 kB in 0s (13.0 MB/s) Reading package lists... W: There is no public key available for the following key IDs: 7638D0442B90D010 W: There is no public key available for the following key IDs: 9D6D8F6BC857C906 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-get', 'update'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-get', '-yf', 'dist-upgrade'] 0m26.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: gcc-4.7-base libapt-pkg4.12 libdb5.1 libgomp1 liblzma5 libmount1 libpam-modules-bin libquadmath0 libsemanage-common libsemanage1 libtinfo5 libustr-1.0-1 libxml2 multiarch-support The following packages will be upgraded: adduser apt base-files base-passwd bash bsdutils coreutils dash debconf debconf-i18n debian-archive-keyring debianutils diffutils dpkg e2fslibs e2fsprogs findutils gcc-4.4-base gnupg gpgv grep gromacs-openmpi gzip hostname initscripts insserv libacl1 libattr1 libblkid1 libbz2-1.0 libc-bin libc6 libcomerr2 libfftw3-3 libgcc1 libgfortran3 libibverbs1 liblocale-gettext-perl libncurses5 libnuma1 libopenmpi1.3 libpam-modules libpam-runtime libpam0g libreadline6 libselinux1 libsepol1 libslang2 libss2 libstdc++6 libtext-charwidth-perl libtext-iconv-perl libtorque2 libusb-0.1-4 libuuid1 login lsb-base mawk mount ncurses-base ncurses-bin openmpi-bin openmpi-common passwd perl-base readline-common sed sensible-utils sysv-rc sysvinit sysvinit-utils tar tzdata ucf util-linux xz-utils zlib1g 77 upgraded, 14 newly installed, 0 to remove and 0 not upgraded. Need to get 47.4 MB of archives. After this operation, 6074 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main debianutils amd64 4.3.2 [78.9 kB] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main gcc-4.7-base amd64 4.7.2-5 [144 kB] Get:3 http://mirror-ubc.debian.org/debian/ wheezy/main libgcc1 amd64 1:4.7.2-5 [43.1 kB] Get:4 http://mirror-ubc.debian.org/debian/ wheezy/main libsemanage-common all 2.1.6-6 [23.2 kB] Get:5 http://mirror-ubc.debian.org/debian/ wheezy/main libsepol1 amd64 2.1.4-3 [135 kB] Get:6 http://mirror-ubc.debian.org/debian/ wheezy/main libustr-1.0-1 amd64 1.0.4-3 [92.5 kB] Get:7 http://mirror-ubc.debian.org/debian/ wheezy/main libbz2-1.0 amd64 1.0.6-4 [46.5 kB] Get:8 http://mirror-ubc.debian.org/debian/ wheezy/main libselinux1 amd64 2.1.9-5 [90.6 kB] Get:9 http://mirror-ubc.debian.org/debian/ wheezy/main libsemanage1 amd64 2.1.6-6 [102 kB] Get:10 http://mirror-ubc.debian.org/debian/ wheezy/main debconf all 1.5.49 [171 kB] Get:11 http://mirror-ubc.debian.org/debian/ wheezy/main libpam0g amd64 1.1.3-7.1 [128 kB] Get:12 http://mirror-ubc.debian.org/debian/ wheezy/main libpam-modules-bin amd64 1.1.3-7.1 [113 kB] Get:13 http://mirror-ubc.debian.org/debian/ wheezy/main libpam-modules amd64 1.1.3-7.1 [348 kB] Get:14 http://mirror-ubc.debian.org/debian/ wheezy/main libuuid1 amd64 2.20.1-5.3 [57.1 kB] Get:15 http://mirror-ubc.debian.org/debian/ wheezy/main libblkid1 amd64 2.20.1-5.3 [120 kB] Get:16 http://mirror-ubc.debian.org/debian/ wheezy/main libslang2 amd64 2.2.4-15 [551 kB] Get:17 http://mirror-ubc.debian.org/debian/ wheezy/main libtinfo5 amd64 5.9-10 [275 kB] Get:18 http://mirror-ubc.debian.org/debian/ wheezy/main lsb-base all 4.1+Debian8+deb7u1 [26.8 kB] Get:19 http://mirror-ubc.debian.org/debian/ wheezy/main liblzma5 amd64 5.1.1alpha+20120614-2 [202 kB] Get:20 http://mirror-ubc.debian.org/debian/ wheezy/main dpkg amd64 1.16.18 [2665 kB] Get:21 http://security.debian.org/ wheezy/updates/main sensible-utils all 0.0.7+deb7u1 [9000 B] Get:22 http://security.debian.org/ wheezy/updates/main libc-bin amd64 2.13-38+deb7u12 [1275 kB] Get:23 http://mirror-ubc.debian.org/debian/ wheezy/main util-linux amd64 2.20.1-5.3 [659 kB] Get:24 http://mirror-ubc.debian.org/debian/ wheezy/main insserv amd64 1.14.0-5 [64.8 kB] Get:25 http://mirror-ubc.debian.org/debian/ wheezy/main sysvinit-utils amd64 2.88dsf-41+deb7u1 [100 kB] Get:26 http://mirror-ubc.debian.org/debian/ wheezy/main sysv-rc all 2.88dsf-41+deb7u1 [81.8 kB] Get:27 http://mirror-ubc.debian.org/debian/ wheezy/main libmount1 amd64 2.20.1-5.3 [120 kB] Get:28 http://mirror-ubc.debian.org/debian/ wheezy/main mount amd64 2.20.1-5.3 [213 kB] Get:29 http://mirror-ubc.debian.org/debian/ wheezy/main libattr1 amd64 1:2.4.46-8 [19.8 kB] Get:30 http://mirror-ubc.debian.org/debian/ wheezy/main libacl1 amd64 2.2.51-8 [30.1 kB] Get:31 http://mirror-ubc.debian.org/debian/ wheezy/main coreutils amd64 8.13-3.5 [5628 kB] Get:32 http://mirror-ubc.debian.org/debian/ wheezy/main initscripts amd64 2.88dsf-41+deb7u1 [91.8 kB] Get:33 http://mirror-ubc.debian.org/debian/ wheezy/main base-files amd64 7.1wheezy11 [67.1 kB] Get:34 http://mirror-ubc.debian.org/debian/ wheezy/main dash amd64 0.5.7-3 [113 kB] Get:35 http://mirror-ubc.debian.org/debian/ wheezy/main diffutils amd64 1:3.2-6 [366 kB] Get:36 http://mirror-ubc.debian.org/debian/ wheezy/main libcomerr2 amd64 1.42.5-1.1+deb7u1 [56.1 kB] Get:37 http://mirror-ubc.debian.org/debian/ wheezy/main e2fslibs amd64 1.42.5-1.1+deb7u1 [197 kB] Get:38 http://mirror-ubc.debian.org/debian/ wheezy/main e2fsprogs amd64 1.42.5-1.1+deb7u1 [979 kB] Get:39 http://mirror-ubc.debian.org/debian/ wheezy/main findutils amd64 4.4.2-4 [694 kB] Get:40 http://mirror-ubc.debian.org/debian/ wheezy/main grep amd64 2.12-2 [454 kB] Get:41 http://mirror-ubc.debian.org/debian/ wheezy/main gzip amd64 1.5-1.1 [119 kB] Get:42 http://mirror-ubc.debian.org/debian/ wheezy/main hostname amd64 3.11 [15.0 kB] Get:43 http://mirror-ubc.debian.org/debian/ wheezy/main ncurses-bin amd64 5.9-10 [335 kB] Get:44 http://mirror-ubc.debian.org/debian/ wheezy/main libtext-charwidth-perl amd64 0.04-7+b1 [11.2 kB] Get:45 http://mirror-ubc.debian.org/debian/ wheezy/main libtext-iconv-perl amd64 1.7-5 [17.6 kB] Get:46 http://mirror-ubc.debian.org/debian/ wheezy/main liblocale-gettext-perl amd64 1.05-7+b1 [20.4 kB] Get:47 http://mirror-ubc.debian.org/debian/ wheezy/main sed amd64 4.2.1-10 [251 kB] Get:48 http://mirror-ubc.debian.org/debian/ wheezy/main sysvinit amd64 2.88dsf-41+deb7u1 [133 kB] Get:49 http://mirror-ubc.debian.org/debian/ wheezy/main base-passwd amd64 3.5.26 [46.3 kB] Get:50 http://mirror-ubc.debian.org/debian/ wheezy/main bsdutils amd64 1:2.20.1-5.3 [85.5 kB] Get:51 http://mirror-ubc.debian.org/debian/ wheezy/main ncurses-base all 5.9-10 [198 kB] Get:52 http://mirror-ubc.debian.org/debian/ wheezy/main libstdc++6 amd64 4.7.2-5 [332 kB] Get:53 http://mirror-ubc.debian.org/debian/ wheezy/main zlib1g amd64 1:1.2.7.dfsg-13 [87.4 kB] Get:54 http://mirror-ubc.debian.org/debian/ wheezy/main debian-archive-keyring all 2014.3~deb7u1 [60.7 kB] Get:55 http://mirror-ubc.debian.org/debian/ wheezy/main readline-common all 6.2+dfsg-0.1 [31.9 kB] Get:56 http://mirror-ubc.debian.org/debian/ wheezy/main libreadline6 amd64 6.2+dfsg-0.1 [166 kB] Get:57 http://mirror-ubc.debian.org/debian/ wheezy/main libusb-0.1-4 amd64 2:0.1.12-20+nmu1 [23.1 kB] Get:58 http://mirror-ubc.debian.org/debian/ wheezy/main libapt-pkg4.12 amd64 0.9.7.9+deb7u7 [891 kB] Get:59 http://mirror-ubc.debian.org/debian/ wheezy/main apt amd64 0.9.7.9+deb7u7 [1262 kB] Get:60 http://mirror-ubc.debian.org/debian/ wheezy/main libncurses5 amd64 5.9-10 [113 kB] Get:61 http://mirror-ubc.debian.org/debian/ wheezy/main libss2 amd64 1.42.5-1.1+deb7u1 [61.4 kB] Get:62 http://security.debian.org/ wheezy/updates/main libc6 amd64 2.13-38+deb7u12 [4226 kB] Get:63 http://mirror-ubc.debian.org/debian/ wheezy/main mawk amd64 1.3.3-17 [90.8 kB] Get:64 http://mirror-ubc.debian.org/debian/ wheezy/main libgomp1 amd64 4.7.2-5 [27.5 kB] Get:65 http://mirror-ubc.debian.org/debian/ wheezy/main libfftw3-3 amd64 3.3.2-3.1 [1665 kB] Get:66 http://mirror-ubc.debian.org/debian/ wheezy/main libquadmath0 amd64 4.7.2-5 [125 kB] Get:67 http://mirror-ubc.debian.org/debian/ wheezy/main libgfortran3 amd64 4.7.2-5 [351 kB] Get:68 http://mirror-ubc.debian.org/debian/ wheezy/main libpam-runtime all 1.1.3-7.1 [228 kB] Get:69 http://mirror-ubc.debian.org/debian/ wheezy/main xz-utils amd64 5.1.1alpha+20120614-2 [237 kB] Get:70 http://mirror-ubc.debian.org/debian/ wheezy/main adduser all 3.113+nmu3 [264 kB] Get:71 http://mirror-ubc.debian.org/debian/ wheezy/main debconf-i18n all 1.5.49 [237 kB] Get:72 http://security.debian.org/ wheezy/updates/main multiarch-support amd64 2.13-38+deb7u12 [152 kB] Get:73 http://mirror-ubc.debian.org/debian/ wheezy/main ucf all 3.0025+nmu3 [70.8 kB] Get:74 http://mirror-ubc.debian.org/debian/ wheezy/main gcc-4.4-base amd64 4.4.7-2 [127 kB] Get:75 http://security.debian.org/ wheezy/updates/main libdb5.1 amd64 5.1.29-5+deb7u1 [723 kB] Get:76 http://mirror-ubc.debian.org/debian/ wheezy/main libnuma1 amd64 2.0.8~rc4-1 [33.7 kB] Get:77 http://mirror-ubc.debian.org/debian/ wheezy/main libtorque2 amd64 2.4.16+dfsg-1+deb7u4 [121 kB] Get:78 http://mirror-ubc.debian.org/debian/ wheezy/main libibverbs1 amd64 1.1.6-1 [35.3 kB] Get:79 http://security.debian.org/ wheezy/updates/main passwd amd64 1:4.1.5.1-1+deb7u1 [1262 kB] Get:80 http://mirror-ubc.debian.org/debian/ wheezy/main libopenmpi1.3 amd64 1.4.5-1 [1436 kB] Get:81 http://security.debian.org/ wheezy/updates/main tzdata all 2017c-0+deb7u1 [493 kB] Get:82 http://security.debian.org/ wheezy/updates/main bash amd64 4.2+dfsg-0.1+deb7u4 [1499 kB] Get:83 http://mirror-ubc.debian.org/debian/ wheezy/main openmpi-bin amd64 1.4.5-1 [166 kB] Get:84 http://security.debian.org/ wheezy/updates/main login amd64 1:4.1.5.1-1+deb7u1 [984 kB] Get:85 http://mirror-ubc.debian.org/debian/ wheezy/main openmpi-common all 1.4.5-1 [101 kB] Get:86 http://security.debian.org/ wheezy/updates/main perl-base amd64 5.14.2-21+deb7u5 [1534 kB] Get:87 http://mirror-ubc.debian.org/debian/ wheezy/main gromacs-openmpi amd64 4.5.5-2 [6229 kB] Get:88 http://security.debian.org/ wheezy/updates/main tar amd64 1.26+dfsg-0.1+deb7u1 [984 kB] Get:89 http://security.debian.org/ wheezy/updates/main gpgv amd64 1.4.12-7+deb7u9 [229 kB] Get:90 http://security.debian.org/ wheezy/updates/main gnupg amd64 1.4.12-7+deb7u9 [1954 kB] Get:91 http://security.debian.org/ wheezy/updates/main libxml2 amd64 2.8.0+dfsg1-7+wheezy12 [907 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 47.4 MB in 0s (63.5 MB/s) (Reading database ... 6554 files and directories currently installed.) Preparing to replace sensible-utils 0.0.4 (using .../sensible-utils_0.0.7+deb7u1_all.deb) ... Unpacking replacement sensible-utils ... Setting up sensible-utils (0.0.7+deb7u1) ... (Reading database ... 6566 files and directories currently installed.) Preparing to replace debianutils 3.4 (using .../debianutils_4.3.2_amd64.deb) ... Unpacking replacement debianutils ... Setting up debianutils (4.3.2) ... (Reading database ... 6592 files and directories currently installed.) Preparing to replace libc-bin 2.11.3-4 (using .../libc-bin_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-38+deb7u12) ... Installing new version of config file /etc/bindresvport.blacklist ... (Reading database ... 6609 files and directories currently installed.) Preparing to replace libc6 2.11.3-4 (using .../libc6_2.13-38+deb7u12_amd64.deb) ... Checking for services that may need to be restarted... Checking init scripts... Unpacking replacement libc6 ... Setting up libc6 (2.13-38+deb7u12) ... Checking for services that may need to be restarted... Checking init scripts... Nothing to restart. Selecting previously deselected package gcc-4.7-base. (Reading database ... 6614 files and directories currently installed.) Unpacking gcc-4.7-base (from .../gcc-4.7-base_4.7.2-5_amd64.deb) ... Setting up gcc-4.7-base (4.7.2-5) ... Selecting previously deselected package multiarch-support. (Reading database ... 6621 files and directories currently installed.) Unpacking multiarch-support (from .../multiarch-support_2.13-38+deb7u12_amd64.deb) ... Setting up multiarch-support (2.13-38+deb7u12) ... (Reading database ... 6625 files and directories currently installed.) Preparing to replace libgcc1 1:4.4.5-8 (using .../libgcc1_1%3a4.7.2-5_amd64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.7.2-5) ... Selecting previously deselected package libsemanage-common. (Reading database ... 6625 files and directories currently installed.) Unpacking libsemanage-common (from .../libsemanage-common_2.1.6-6_all.deb) ... Setting up libsemanage-common (2.1.6-6) ... (Reading database ... 6632 files and directories currently installed.) Preparing to replace libsepol1 2.0.41-1 (using .../libsepol1_2.1.4-3_amd64.deb) ... Unpacking replacement libsepol1 ... Setting up libsepol1 (2.1.4-3) ... Selecting previously deselected package libustr-1.0-1. (Reading database ... 6632 files and directories currently installed.) Unpacking libustr-1.0-1 (from .../libustr-1.0-1_1.0.4-3_amd64.deb) ... Setting up libustr-1.0-1 (1.0.4-3) ... (Reading database ... 6643 files and directories currently installed.) Preparing to replace libbz2-1.0 1.0.5-6+squeeze1 (using .../libbz2-1.0_1.0.6-4_amd64.deb) ... Unpacking replacement libbz2-1.0 ... Setting up libbz2-1.0 (1.0.6-4) ... (Reading database ... 6643 files and directories currently installed.) Preparing to replace libselinux1 2.0.96-1 (using .../libselinux1_2.1.9-5_amd64.deb) ... Unpacking replacement libselinux1 ... Setting up libselinux1 (2.1.9-5) ... Selecting previously deselected package libsemanage1. (Reading database ... 6643 files and directories currently installed.) Unpacking libsemanage1 (from .../libsemanage1_2.1.6-6_amd64.deb) ... Setting up libsemanage1 (2.1.6-6) ... (Reading database ... 6648 files and directories currently installed.) Preparing to replace debconf 1.5.36.1 (using .../debconf_1.5.49_all.deb) ... Unpacking replacement debconf ... Setting up debconf (1.5.49) ... (Reading database ... 6651 files and directories currently installed.) Preparing to replace libpam0g 1.1.1-6.1+squeeze1 (using .../libpam0g_1.1.3-7.1_amd64.deb) ... Unpacking replacement libpam0g ... Setting up libpam0g (1.1.3-7.1) ... Checking for services that may need to be restarted...Checking init scripts... Nothing to restart. Selecting previously deselected package libdb5.1. (Reading database ... 6651 files and directories currently installed.) Unpacking libdb5.1 (from .../libdb5.1_5.1.29-5+deb7u1_amd64.deb) ... Setting up libdb5.1 (5.1.29-5+deb7u1) ... Selecting previously deselected package libpam-modules-bin. (Reading database ... 6657 files and directories currently installed.) Unpacking libpam-modules-bin (from .../libpam-modules-bin_1.1.3-7.1_amd64.deb) ... Replacing files in old package libpam-modules ... Setting up libpam-modules-bin (1.1.3-7.1) ... (Reading database ... 6663 files and directories currently installed.) Preparing to replace libpam-modules 1.1.1-6.1+squeeze1 (using .../libpam-modules_1.1.3-7.1_amd64.deb) ... Unpacking replacement libpam-modules ... Setting up libpam-modules (1.1.3-7.1) ... Installing new version of config file /etc/security/group.conf ... (Reading database ... 6662 files and directories currently installed.) Preparing to replace passwd 1:4.1.4.2+svn3283-2+squeeze1 (using .../passwd_1%3a4.1.5.1-1+deb7u1_amd64.deb) ... Unpacking replacement passwd ... Setting up passwd (1:4.1.5.1-1+deb7u1) ... (Reading database ... 6682 files and directories currently installed.) Preparing to replace libuuid1 2.17.2-9 (using .../libuuid1_2.20.1-5.3_amd64.deb) ... Unpacking replacement libuuid1 ... Setting up libuuid1 (2.20.1-5.3) ... (Reading database ... 6683 files and directories currently installed.) Preparing to replace libblkid1 2.17.2-9 (using .../libblkid1_2.20.1-5.3_amd64.deb) ... Unpacking replacement libblkid1 ... Setting up libblkid1 (2.20.1-5.3) ... (Reading database ... 6683 files and directories currently installed.) Preparing to replace libslang2 2.2.2-4 (using .../libslang2_2.2.4-15_amd64.deb) ... Unpacking replacement libslang2 ... Setting up libslang2 (2.2.4-15) ... Selecting previously deselected package libtinfo5. (Reading database ... 6681 files and directories currently installed.) Unpacking libtinfo5 (from .../libtinfo5_5.9-10_amd64.deb) ... Setting up libtinfo5 (5.9-10) ... (Reading database ... 6690 files and directories currently installed.) Preparing to replace lsb-base 3.2-23.2squeeze1 (using .../lsb-base_4.1+Debian8+deb7u1_all.deb) ... Unpacking replacement lsb-base ... Setting up lsb-base (4.1+Debian8+deb7u1) ... (Reading database ... 6692 files and directories currently installed.) Preparing to replace tzdata 2014e-0squeeze1 (using .../tzdata_2017c-0+deb7u1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2017c-0+deb7u1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Dec 23 11:33:28 UTC 2017. Universal Time is now: Sat Dec 23 11:33:28 UTC 2017. Run 'dpkg-reconfigure tzdata' if you wish to change it. Selecting previously deselected package liblzma5. (Reading database ... 6731 files and directories currently installed.) Unpacking liblzma5 (from .../liblzma5_5.1.1alpha+20120614-2_amd64.deb) ... Setting up liblzma5 (5.1.1alpha+20120614-2) ... (Reading database ... 6740 files and directories currently installed.) 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Unpacking replacement sysvinit-utils ... Setting up sysvinit-utils (2.88dsf-41+deb7u1) ... (Reading database ... 6748 files and directories currently installed.) Preparing to replace sysv-rc 2.88dsf-13.1+squeeze1 (using .../sysv-rc_2.88dsf-41+deb7u1_all.deb) ... Unpacking replacement sysv-rc ... Setting up sysv-rc (2.88dsf-41+deb7u1) ... Selecting previously unselected package libmount1. (Reading database ... 6749 files and directories currently installed.) Unpacking libmount1 (from .../libmount1_2.20.1-5.3_amd64.deb) ... Setting up libmount1 (2.20.1-5.3) ... (Reading database ... 6755 files and directories currently installed.) Preparing to replace mount 2.17.2-9 (using .../mount_2.20.1-5.3_amd64.deb) ... Unpacking replacement mount ... Setting up mount (2.20.1-5.3) ... (Reading database ... 6757 files and directories currently installed.) Preparing to replace libattr1 1:2.4.44-2 (using .../libattr1_1%3a2.4.46-8_amd64.deb) ... Unpacking replacement libattr1:amd64 ... Setting up libattr1:amd64 (1:2.4.46-8) ... (Reading database ... 6758 files and directories currently installed.) Preparing to replace libacl1 2.2.49-4 (using .../libacl1_2.2.51-8_amd64.deb) ... Unpacking replacement libacl1:amd64 ... Setting up libacl1:amd64 (2.2.51-8) ... (Reading database ... 6758 files and directories currently installed.) Preparing to replace coreutils 8.5-1 (using .../coreutils_8.13-3.5_amd64.deb) ... Unpacking replacement coreutils ... Setting up coreutils (8.13-3.5) ... (Reading database ... 6679 files and directories currently installed.) Preparing to replace initscripts 2.88dsf-13.1+squeeze1 (using .../initscripts_2.88dsf-41+deb7u1_amd64.deb) ... Removing unmodified and obsolete conffile /etc/default/bootlogd ... Removing unmodified and obsolete conffile /etc/init.d/mountoverflowtmp ... Upgrading unmodified configuration file /etc/default/rcS ... Unpacking replacement initscripts ... Setting up initscripts (2.88dsf-41+deb7u1) ... Installing new version of config file /etc/init.d/bootlogs ... Installing new version of config file /etc/init.d/bootmisc.sh ... Installing new version of config file /etc/init.d/checkfs.sh ... Installing new version of config file /etc/init.d/checkroot.sh ... Installing new version of config file /etc/init.d/mountall.sh ... Installing new version of config file /etc/init.d/mountall-bootclean.sh ... Installing new version of config file /etc/init.d/mountnfs.sh ... Installing new version of config file /etc/init.d/mountnfs-bootclean.sh ... Installing new version of config file /etc/init.d/mountdevsubfs.sh ... Installing new version of config file /etc/init.d/mountkernfs.sh ... Installing new version of config file /etc/init.d/mtab.sh ... Installing new version of config file /etc/init.d/rc.local ... Installing new version of config file /etc/init.d/sendsigs ... Installing new version of config file /etc/init.d/umountfs ... 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(Reading database ... 6682 files and directories currently installed.) Preparing to replace bash 4.1-3 (using .../bash_4.2+dfsg-0.1+deb7u4_amd64.deb) ... Unpacking replacement bash ... Setting up bash (4.2+dfsg-0.1+deb7u4) ... Installing new version of config file /etc/bash.bashrc ... Installing new version of config file /etc/skel/.bashrc ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 6685 files and directories currently installed.) Preparing to replace dash 0.5.5.1-7.4 (using .../dash_0.5.7-3_amd64.deb) ... Unpacking replacement dash ... Setting up dash (0.5.7-3) ... (Reading database ... 6685 files and directories currently installed.) Preparing to replace diffutils 1:3.0-1 (using .../diffutils_1%3a3.2-6_amd64.deb) ... Unpacking replacement diffutils ... Setting up diffutils (1:3.2-6) ... (Reading database ... 6686 files and directories currently installed.) 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Setting up findutils (4.4.2-4) ... (Reading database ... 6682 files and directories currently installed.) Preparing to replace grep 2.6.3-3+squeeze1 (using .../archives/grep_2.12-2_amd64.deb) ... Unpacking replacement grep ... Setting up grep (2.12-2) ... (Reading database ... 6682 files and directories currently installed.) Preparing to replace gzip 1.3.12-9+squeeze1 (using .../gzip_1.5-1.1_amd64.deb) ... Unpacking replacement gzip ... Setting up gzip (1.5-1.1) ... (Reading database ... 6682 files and directories currently installed.) Preparing to replace hostname 3.04 (using .../hostname_3.11_amd64.deb) ... Unpacking replacement hostname ... Setting up hostname (3.11) ... (Reading database ... 6681 files and directories currently installed.) Preparing to replace login 1:4.1.4.2+svn3283-2+squeeze1 (using .../login_1%3a4.1.5.1-1+deb7u1_amd64.deb) ... Unpacking replacement login ... Setting up login (1:4.1.5.1-1+deb7u1) ... Installing new version of config file /etc/pam.d/login ... Installing new version of config file /etc/login.defs ... Installing new version of config file /etc/securetty ... (Reading database ... 6696 files and directories currently installed.) Preparing to replace ncurses-bin 5.7+20100313-5 (using .../ncurses-bin_5.9-10_amd64.deb) ... Unpacking replacement ncurses-bin ... Setting up ncurses-bin (5.9-10) ... (Reading database ... 6698 files and directories currently installed.) Preparing to replace libtext-charwidth-perl 0.04-6 (using .../libtext-charwidth-perl_0.04-7+b1_amd64.deb) ... Unpacking replacement libtext-charwidth-perl ... Preparing to replace libtext-iconv-perl 1.7-2 (using .../libtext-iconv-perl_1.7-5_amd64.deb) ... Unpacking replacement libtext-iconv-perl ... Preparing to replace perl-base 5.10.1-17squeeze6 (using .../perl-base_5.14.2-21+deb7u5_amd64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-21+deb7u5) ... (Reading database ... 7127 files and directories currently installed.) 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Unpacking replacement zlib1g:amd64 ... Setting up zlib1g:amd64 (1:1.2.7.dfsg-13) ... (Reading database ... 7132 files and directories currently installed.) Preparing to replace gpgv 1.4.10-4+squeeze4 (using .../gpgv_1.4.12-7+deb7u9_amd64.deb) ... Unpacking replacement gpgv ... Setting up gpgv (1.4.12-7+deb7u9) ... (Reading database ... 7132 files and directories currently installed.) Preparing to replace debian-archive-keyring 2010.08.28+squeeze1 (using .../debian-archive-keyring_2014.3~deb7u1_all.deb) ... Unpacking replacement debian-archive-keyring ... Setting up debian-archive-keyring (2014.3~deb7u1) ... (Reading database ... 7139 files and directories currently installed.) Preparing to replace readline-common 6.1-3 (using .../readline-common_6.2+dfsg-0.1_all.deb) ... Unpacking replacement readline-common ... Setting up readline-common (6.2+dfsg-0.1) ... (Reading database ... 7138 files and directories currently installed.) 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Unpacking libapt-pkg4.12:amd64 (from .../libapt-pkg4.12_0.9.7.9+deb7u7_amd64.deb) ... De-configuring apt ... Setting up libapt-pkg4.12:amd64 (0.9.7.9+deb7u7) ... (Reading database ... 7174 files and directories currently installed.) Preparing to replace apt 0.8.10.3+squeeze1 (using .../apt_0.9.7.9+deb7u7_amd64.deb) ... Unpacking replacement apt ... Setting up apt (0.9.7.9+deb7u7) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt ... gpg: key B98321F9: "Squeeze Stable Release Key " not changed gpg: key 473041FA: "Debian Archive Automatic Signing Key (6.0/squeeze) " not changed gpg: key 65FFB764: "Wheezy Stable Release Key " not changed gpg: key 46925553: "Debian Archive Automatic Signing Key (7.0/wheezy) " not changed gpg: key 518E17E1: "Jessie Stable Release Key " not changed gpg: key 2B90D010: "Debian Archive Automatic Signing Key (8/jessie) " not changed gpg: key C857C906: "Debian Security Archive Automatic Signing Key (8/jessie) " not changed gpg: Total number processed: 7 gpg: unchanged: 7 gpg: checking the trustdb gpg: WARNING: digest algorithm MD5 is deprecated gpg: please see http://www.gnupg.org/faq/weak-digest-algos.html for more information gpg: no ultimately trusted keys found (Reading database ... 7085 files and directories currently installed.) Preparing to replace libncurses5 5.7+20100313-5 (using .../libncurses5_5.9-10_amd64.deb) ... Unpacking replacement libncurses5:amd64 ... Setting up libncurses5:amd64 (5.9-10) ... (Reading database ... 7077 files and directories currently installed.) Preparing to replace libss2 1.41.12-4stable1 (using .../libss2_1.42.5-1.1+deb7u1_amd64.deb) ... Unpacking replacement libss2:amd64 ... Setting up libss2:amd64 (1.42.5-1.1+deb7u1) ... (Reading database ... 7077 files and directories currently installed.) Preparing to replace mawk 1.3.3-15 (using .../mawk_1.3.3-17_amd64.deb) ... Unpacking replacement mawk ... Selecting previously unselected package libgomp1:amd64. Unpacking libgomp1:amd64 (from .../libgomp1_4.7.2-5_amd64.deb) ... Preparing to replace libfftw3-3 3.2.2-1 (using .../libfftw3-3_3.3.2-3.1_amd64.deb) ... Unpacking replacement libfftw3-3:amd64 ... Selecting previously unselected package libquadmath0:amd64. Unpacking libquadmath0:amd64 (from .../libquadmath0_4.7.2-5_amd64.deb) ... Preparing to replace libgfortran3 4.4.5-8 (using .../libgfortran3_4.7.2-5_amd64.deb) ... 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Preparing to replace openmpi-common 1.4.2-4 (using .../openmpi-common_1.4.5-1_all.deb) ... Unpacking replacement openmpi-common ... Preparing to replace gromacs-openmpi 4.0.7-3 (using .../gromacs-openmpi_4.5.5-2_amd64.deb) ... Unpacking replacement gromacs-openmpi ... Setting up libtext-charwidth-perl (0.04-7+b1) ... Setting up libtext-iconv-perl (1.7-5) ... Setting up liblocale-gettext-perl (1.05-7+b1) ... Setting up mawk (1.3.3-17) ... Setting up libgomp1:amd64 (4.7.2-5) ... Setting up libfftw3-3:amd64 (3.3.2-3.1) ... Setting up libquadmath0:amd64 (4.7.2-5) ... Setting up libgfortran3:amd64 (4.7.2-5) ... Setting up libxml2:amd64 (2.8.0+dfsg1-7+wheezy12) ... Setting up adduser (3.113+nmu3) ... Installing new version of config file /etc/deluser.conf ... Setting up debconf-i18n (1.5.49) ... Setting up ucf (3.0025+nmu3) ... Setting up gcc-4.4-base:amd64 (4.4.7-2) ... Setting up libnuma1 (2.0.8~rc4-1) ... Setting up libtorque2 (2.4.16+dfsg-1+deb7u4) ... Setting up libibverbs1 (1.1.6-1) ... Setting up libopenmpi1.3 (1.4.5-1) ... Setting up openmpi-common (1.4.5-1) ... Setting up openmpi-bin (1.4.5-1) ... Setting up gromacs-openmpi (4.5.5-2) ... 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-get', '-yf', 'dist-upgrade'] 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m27.0s DUMP: 70924ef24b575d4a489e37de95b5c4f2 - 0m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-cache', 'show', 'gromacs-openmpi'] 0m27.1s DUMP: Package: gromacs-openmpi Source: gromacs Version: 4.5.5-2 Installed-Size: 12800 Maintainer: Debichem Team Architecture: amd64 Replaces: gromacs-lam Depends: libc6 (>= 2.11), libfftw3-3, libopenmpi1.3, libxml2 (>= 2.7.4), openmpi-bin (>= 1.2.3) Recommends: gromacs Suggests: gromacs-data Description: Molecular dynamics sim, binaries for OpenMPI parallelization Homepage: http://www.gromacs.org/ Description-md5: c30854a1f128b7a83468fdd24f8edbc3 Tag: devel::lang:c, devel::library, field::biology, field::chemistry, implemented-in::c, interface::commandline, role::devel-lib, role::program, scope::utility, works-with::software:package Section: science Priority: extra Filename: pool/main/g/gromacs/gromacs-openmpi_4.5.5-2_amd64.deb Size: 6229088 MD5sum: 4e1d28f4cd733328c62ae2bd35675799 SHA1: 12da1dc4f73d911a06d9c61ae9cea02c542bd2d2 SHA256: 4a6206e6fae5678c954ecdfe11e86f1ba2729dfb09bfd30a6e2775290e8b4a56 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-cache', 'show', 'gromacs-openmpi'] 0m27.1s INFO: apt-cache knows about the following packages: gromacs-openmpi 0m27.1s INFO: Running scripts pre_install 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_database-server'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_database-server'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_exceptions'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_exceptions'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_extras'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_extras'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_foreign_architecture'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_foreign_architecture'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-cache', 'policy'] 0m27.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ wheezy/updates/main amd64 Packages release v=7.0,o=Debian,a=oldoldstable,n=wheezy,l=Debian-Security,c=main origin security.debian.org 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-cache', 'policy'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-cache', 'policy', 'gromacs-openmpi'] 0m27.1s DUMP: gromacs-openmpi: Installed: 4.5.5-2 Candidate: 4.5.5-2 Version table: *** 4.5.5-2 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 100 /var/lib/dpkg/status 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-cache', 'policy', 'gromacs-openmpi'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-get', '-y', 'install', 'gromacs-openmpi'] 0m27.4s DUMP: Reading package lists... Building dependency tree... Reading state information... gromacs-openmpi is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-get', '-y', 'install', 'gromacs-openmpi'] 0m27.4s INFO: Running scripts post_install 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_install_exceptions'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_install_exceptions'] 0m27.4s INFO: Running scripts post_distupgrade 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_distupgrade_exceptions'] 0m27.4s DUMP: FIXING /usr/share/keyrings/debian-archive-removed-keys.gpg~ `/usr/share/keyrings/debian-archive-removed-keys.gpg~' -> `/usr/share/keyrings/debian-archive-removed-keys.gpg' 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_distupgrade_exceptions'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_distupgrade_zz_backports'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_distupgrade_zz_backports'] 0m27.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8C8YDs'] 0m27.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8C8YDs'] 0m27.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8C8YDs'] 0m27.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8C8YDs'] 0m27.9s INFO: Running scripts pre_install 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_database-server'] 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_database-server'] 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_exceptions'] 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_exceptions'] 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_extras'] 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_extras'] 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_foreign_architecture'] 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_foreign_architecture'] 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-cache', 'policy'] 0m28.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ wheezy/updates/main amd64 Packages release v=7.0,o=Debian,a=oldoldstable,n=wheezy,l=Debian-Security,c=main origin security.debian.org 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-cache', 'policy'] 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-cache', 'policy', 'gromacs-openmpi'] 0m28.0s DUMP: gromacs-openmpi: Installed: 4.5.5-2 Candidate: 4.5.5-2 Version table: *** 4.5.5-2 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 100 /var/lib/dpkg/status 0m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-cache', 'policy', 'gromacs-openmpi'] 0m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-get', '-y', 'install', 'gromacs-openmpi=4.5.5-2'] 0m28.2s DUMP: Reading package lists... Building dependency tree... Reading state information... gromacs-openmpi is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m28.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-get', '-y', 'install', 'gromacs-openmpi=4.5.5-2'] 0m28.2s INFO: Running scripts post_install 0m28.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_install_exceptions'] 0m28.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_install_exceptions'] 0m28.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8C8YDs'] 0m28.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8C8YDs'] 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m28.5s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u4 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.4-base:amd64 gcc-4.4-base 4.4.7-2 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u9 install ok installed gpgv gpgv 1.4.12-7+deb7u9 install ok installed grep grep 2.12-2 install ok installed gromacs-openmpi gromacs-openmpi 4.5.5-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u12 install ok installed libc6:amd64 libc6 2.13-38+deb7u12 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb4.8 libdb4.8 4.8.30-2 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5+deb7u1 install ok installed libfftw3-3:amd64 libfftw3-3 3.3.2-3.1 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed libgfortran3:amd64 libgfortran3 4.7.2-5 install ok installed libgomp1:amd64 libgomp1 4.7.2-5 install ok installed libibverbs1 libibverbs1 1.1.6-1 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma2 liblzma2 5.0.0-2 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libnuma1 libnuma1 2.0.8~rc4-1 install ok installed libopenmpi1.3 libopenmpi1.3 1.4.5-1 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libquadmath0:amd64 libquadmath0 4.7.2-5 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libtorque2 libtorque2 2.4.16+dfsg-1+deb7u4 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed libxml2:amd64 libxml2 2.8.0+dfsg1-7+wheezy12 install ok installed login login 1:4.1.5.1-1+deb7u1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u12 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed openmpi-bin openmpi-bin 1.4.5-1 install ok installed openmpi-common openmpi-common 1.4.5-1 install ok installed passwd passwd 1:4.1.5.1-1+deb7u1 install ok installed perl-base perl-base 5.14.2-21+deb7u5 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7+deb7u1 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1+deb7u1 install ok installed tzdata tzdata 2017c-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m28.8s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', '-ac', '--ignore-obsolete'] 0m29.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', '-ac', '--ignore-obsolete'] 0m29.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m29.4s DUMP: 0.15.1 0m29.4s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m29.4s INFO: Running adequate version 0.15.1 now. 0m29.4s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'gromacs-openmpi'] 0m29.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'gromacs-openmpi'] 0m29.5s INFO: Running scripts pre_remove 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m30.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m30.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m30.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m30.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m30.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m30.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_remove_exceptions'] 0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/pre_remove_exceptions'] 0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-get', 'remove', 'libxml2:amd64', 'libgomp1:amd64', 'libibverbs1', 'gcc-4.4-base:amd64', 'openmpi-bin', 'libquadmath0:amd64', 'libnuma1', 'openmpi-common', 'libopenmpi1.3', 'libtorque2', 'libfftw3-3:amd64', 'libdb4.8', 'libgfortran3:amd64', 'gromacs-openmpi'] 0m30.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: gcc-4.4-base gromacs-openmpi libdb4.8 libfftw3-3 libgfortran3 libgomp1 libibverbs1 libnuma1 libopenmpi1.3 libquadmath0 libtorque2 libxml2 openmpi-bin openmpi-common 0 upgraded, 0 newly installed, 14 to remove and 0 not upgraded. After this operation, 28.7 MB disk space will be freed. (Reading database ... 7122 files and directories currently installed.) Removing gcc-4.4-base:amd64 ... Removing gromacs-openmpi ... Removing libdb4.8 ... Removing libfftw3-3:amd64 ... Removing openmpi-bin ... Removing libopenmpi1.3 ... Removing libgfortran3:amd64 ... Removing libgomp1:amd64 ... Removing libibverbs1 ... Removing libnuma1 ... Removing libquadmath0:amd64 ... Removing libtorque2 ... Removing libxml2:amd64 ... Removing openmpi-common ... 0m30.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-get', 'remove', 'libxml2:amd64', 'libgomp1:amd64', 'libibverbs1', 'gcc-4.4-base:amd64', 'openmpi-bin', 'libquadmath0:amd64', 'libnuma1', 'openmpi-common', 'libopenmpi1.3', 'libtorque2', 'libfftw3-3:amd64', 'libdb4.8', 'libgfortran3:amd64', 'gromacs-openmpi'] 0m30.9s INFO: Running scripts post_remove 0m30.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_remove_exceptions'] 0m30.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_remove_exceptions'] 0m30.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'dpkg', '--purge', 'libxml2:amd64', 'libgomp1:amd64', 'libibverbs1', 'gcc-4.4-base:amd64', 'openmpi-bin', 'libquadmath0:amd64', 'libnuma1', 'openmpi-common', 'libopenmpi1.3', 'libtorque2', 'libfftw3-3:amd64', 'libdb4.8', 'libgfortran3:amd64'] 0m30.9s DUMP: (Reading database ... 6796 files and directories currently installed.) Removing libxml2:amd64 ... Purging configuration files for libxml2:amd64 ... Removing libgomp1:amd64 ... Purging configuration files for libgomp1:amd64 ... Removing libibverbs1 ... Purging configuration files for libibverbs1 ... dpkg: warning: ignoring request to remove gcc-4.4-base which isn't installed Removing openmpi-bin ... Purging configuration files for openmpi-bin ... Removing libquadmath0:amd64 ... Purging configuration files for libquadmath0:amd64 ... Removing libnuma1 ... Purging configuration files for libnuma1 ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed Removing libopenmpi1.3 ... Purging configuration files for libopenmpi1.3 ... Removing libtorque2 ... Purging configuration files for libtorque2 ... Removing libfftw3-3:amd64 ... Purging configuration files for libfftw3-3:amd64 ... dpkg: warning: ignoring request to remove libdb4.8 which isn't installed Removing libgfortran3:amd64 ... Purging configuration files for libgfortran3:amd64 ... 0m30.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'dpkg', '--purge', 'libxml2:amd64', 'libgomp1:amd64', 'libibverbs1', 'gcc-4.4-base:amd64', 'openmpi-bin', 'libquadmath0:amd64', 'libnuma1', 'openmpi-common', 'libopenmpi1.3', 'libtorque2', 'libfftw3-3:amd64', 'libdb4.8', 'libgfortran3:amd64'] 0m30.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'dpkg', '--purge', 'gromacs-openmpi'] 0m30.9s DUMP: (Reading database ... 6792 files and directories currently installed.) Removing gromacs-openmpi ... Purging configuration files for gromacs-openmpi ... 0m30.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'dpkg', '--purge', 'gromacs-openmpi'] 0m30.9s INFO: Running scripts post_purge 0m30.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_purge_exceptions'] 0m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_purge_exceptions'] 0m31.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'dpkg', '--purge', '--pending'] 0m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'dpkg', '--purge', '--pending'] 0m31.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'dpkg', '--remove', '--pending'] 0m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'dpkg', '--remove', '--pending'] 0m31.0s INFO: Running scripts post_test 0m31.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_test_exceptions'] 0m31.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'tmp/scripts/post_test_exceptions'] 0m31.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8C8YDs'] 0m31.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8C8YDs'] 0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'dpkg-divert', '--list'] 0m31.3s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'dpkg-divert', '--list'] 0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-get', 'clean'] 0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8C8YDs', 'apt-get', 'clean'] 0m31.3s DEBUG: Recording chroot state 0m32.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8C8YDs/dev/shm'] 0m32.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8C8YDs/dev/shm'] 0m32.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8C8YDs/dev/console'] 0m32.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8C8YDs/dev/console'] 0m32.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8C8YDs/dev/ptmx'] 0m32.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8C8YDs/dev/ptmx'] 0m32.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8C8YDs/dev/pts'] 0m32.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8C8YDs/dev/pts'] 0m32.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8C8YDs/proc'] 0m32.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8C8YDs/proc'] 0m32.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp8C8YDs'] 0m32.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp8C8YDs'] 0m32.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp8C8YDs 0m32.5s INFO: PASS: Upgrading between Debian distributions. 0m32.5s INFO: PASS: All tests. 0m32.5s INFO: piuparts run ends. ret=0 End: 2017-12-23 11:33:39 UTC