Start: 2018-01-21 01:48:44 UTC [squeeze] Package: altree Priority: optional Section: science Installed-Size: 588 Maintainer: Debian-Med Packaging Team Architecture: amd64 Version: 1.0.1-3 Replaces: alphy, libcutils-perl Provides: alphy, libcutils-perl Depends: libc6 (>= 2.7-1), perl (>= 5.10.0-11), perlapi-5.10.0 Suggests: altree-examples Conflicts: alphy, libcutils-perl Filename: pool/main/a/altree/altree_1.0.1-3_amd64.deb Size: 254312 MD5sum: a9f1388e51f71f39e287a71727e452da SHA1: 38a69bd97d9e5dc4191f8b0e0fb6ebfcafb2eb0e SHA256: 06bceca40ad45bddcc09c1140ac0f8c6854565e25000cdae4b21016fa9ef963b Description: program to perform phylogeny based analyses ALTree was designed to perform phylogeny based analysis: first, it allows the detection of an association between a candidate gene and a disease, and second, it enables to make hypothesis about the susceptibility loci. Homepage: http://claire.bardel.free.fr/ Tag: field::biology, field::biology:bioinformatics, implemented-in::c, implemented-in::perl, interface::commandline, role::program, role::shared-lib, scope::utility, use::analysing, use::comparing, works-with-format::plaintext [wheezy] Package: altree Version: 1.2.1-1 Installed-Size: 541 Maintainer: Debian Med Packaging Team Architecture: amd64 Replaces: alphy, libcutils-perl Provides: alphy, libcutils-perl Depends: libc6 (>= 2.2.5), perl (>= 5.14.2-11), perlapi-5.14.2, libmath-tamuanova-perl, libpdl-stats-perl Suggests: altree-examples Conflicts: alphy, libcutils-perl Description: program to perform phylogeny-based association and localization analysis Homepage: http://claire.bardel.free.fr/software.html Description-md5: b6b21ff883122e1527c5ccc7bb5583bd Tag: field::biology, field::biology:bioinformatics, implemented-in::c, implemented-in::perl, interface::commandline, role::program, role::shared-lib, scope::utility, use::analysing, use::comparing, works-with-format::TODO, works-with-format::plaintext, works-with::TODO Section: science Priority: optional Filename: pool/main/a/altree/altree_1.2.1-1_amd64.deb Size: 326886 MD5sum: 8bb4761b0bb5ae41a2c282e5cc1c648f SHA1: c8884ee5a217e50db75886312518ad915f8cdab2 SHA256: 894f4b918a112e89963a453d3521de72045a762af160550f432191faf85f0200 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --no-check-valid-until --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze -d wheezy -B reference-chroot-metadata.dat --apt altree=1.2.1-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.84~201801121524~0.83-4-g6e16ed9a starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --no-check-valid-until --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze -d wheezy -B reference-chroot-metadata.dat --apt altree=1.2.1-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.9.0-5-amd64 #1 SMP Debian 4.9.65-3+deb9u2 (2018-01-04) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpe6DqM2 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpe6DqM2 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.9s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpe6DqM2/proc'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpe6DqM2/proc'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpe6DqM2/dev/pts'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpe6DqM2/dev/pts'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpe6DqM2/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpe6DqM2/dev/ptmx'] 0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpe6DqM2/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpe6DqM2/dev/ptmx'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpe6DqM2/dev/console'] 0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpe6DqM2/dev/console'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpe6DqM2/dev/shm'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpe6DqM2/dev/shm'] 0m2.0s DEBUG: sources.list: deb http://archive.debian.org/debian squeeze main 0m2.0s DEBUG: Created policy-rc.d and chmodded it. 0m2.0s DEBUG: Created resolv.conf. 0m2.0s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpe6DqM2/tmp/scripts/ 0m2.0s DEBUG: Copying scriptsdir /etc/piuparts/scripts-wheezy to /srv/piuparts.debian.org/tmp/tmpe6DqM2/tmp/scripts/ 0m2.0s INFO: Running scripts post_chroot_unpack 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-get', 'update'] 0m2.1s DUMP: Hit http://archive.debian.org squeeze Release.gpg Ign http://archive.debian.org/debian/ squeeze/main Translation-en Hit http://archive.debian.org squeeze Release Hit http://archive.debian.org squeeze/main amd64 Packages Reading package lists... 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-get', 'update'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-get', '-yf', 'dist-upgrade'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.4s DUMP: 6a0e4d3b374fdc6be02fc5f39fbf3166 - 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.4s INFO: Running scripts post_setup 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_setup_dummy_users'] 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_setup_dummy_users'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_setup_forbid_home'] 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_setup_forbid_home'] 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_setup_minimize'] 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_setup_minimize'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m3.5s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 320 kB of archives. After this operation, 1532 kB of additional disk space will be used. Get:1 http://archive.debian.org/debian/ squeeze/main adduser all 3.112+nmu2 [250 kB] Get:2 http://archive.debian.org/debian/ squeeze/main ucf all 3.0025+nmu1 [69.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 320 kB in 0s (0 B/s) Selecting previously deselected package adduser. (Reading database ... 6138 files and directories currently installed.) Unpacking adduser (from .../adduser_3.112+nmu2_all.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu1_all.deb) ... Moving old data out of the way Setting up adduser (3.112+nmu2) ... Setting up ucf (3.0025+nmu1) ... 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_setup_zz_backports'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_setup_zz_backports'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.5s DUMP: install ok installed adduser 3.112+nmu2 install ok installed apt 0.8.10.3+squeeze1 install ok installed base-files 6.0squeeze10 install ok installed base-passwd 3.5.22 install ok installed bash 4.1-3 install ok installed bsdutils 1:2.17.2-9 install ok installed coreutils 8.5-1 install ok installed dash 0.5.5.1-7.4 install ok installed debconf 1.5.36.1 install ok installed debconf-i18n 1.5.36.1 install ok installed debian-archive-keyring 2010.08.28+squeeze1 install ok installed debianutils 3.4 install ok installed diffutils 1:3.0-1 install ok installed dpkg 1.15.11 install ok installed e2fslibs 1.41.12-4stable1 install ok installed e2fsprogs 1.41.12-4stable1 install ok installed findutils 4.4.2-1+b1 install ok installed gcc-4.4-base 4.4.5-8 install ok installed gnupg 1.4.10-4+squeeze4 install ok installed gpgv 1.4.10-4+squeeze4 install ok installed grep 2.6.3-3+squeeze1 install ok installed gzip 1.3.12-9+squeeze1 install ok installed hostname 3.04 install ok installed initscripts 2.88dsf-13.1+squeeze1 install ok installed insserv 1.14.0-2 install ok installed libacl1 2.2.49-4 install ok installed libattr1 1:2.4.44-2 install ok installed libblkid1 2.17.2-9 install ok installed libbz2-1.0 1.0.5-6+squeeze1 install ok installed libc-bin 2.11.3-4 install ok installed libc6 2.11.3-4 install ok installed libcomerr2 1.41.12-4stable1 install ok installed libdb4.8 4.8.30-2 install ok installed libgcc1 1:4.4.5-8 install ok installed liblocale-gettext-perl 1.05-6 install ok installed liblzma2 5.0.0-2 install ok installed libncurses5 5.7+20100313-5 install ok installed libpam-modules 1.1.1-6.1+squeeze1 install ok installed libpam-runtime 1.1.1-6.1+squeeze1 install ok installed libpam0g 1.1.1-6.1+squeeze1 install ok installed libreadline6 6.1-3 install ok installed libselinux1 2.0.96-1 install ok installed libsepol1 2.0.41-1 install ok installed libslang2 2.2.2-4 install ok installed libss2 1.41.12-4stable1 install ok installed libstdc++6 4.4.5-8 install ok installed libtext-charwidth-perl 0.04-6 install ok installed libtext-iconv-perl 1.7-2 install ok installed libtext-wrapi18n-perl 0.06-7 install ok installed libusb-0.1-4 2:0.1.12-16 install ok installed libuuid1 2.17.2-9 install ok installed login 1:4.1.4.2+svn3283-2+squeeze1 install ok installed lsb-base 3.2-23.2squeeze1 install ok installed mawk 1.3.3-15 install ok installed mount 2.17.2-9 install ok installed ncurses-base 5.7+20100313-5 install ok installed ncurses-bin 5.7+20100313-5 install ok installed passwd 1:4.1.4.2+svn3283-2+squeeze1 install ok installed perl-base 5.10.1-17squeeze6 install ok installed readline-common 6.1-3 install ok installed sed 4.2.1-7 install ok installed sensible-utils 0.0.4 install ok installed sysv-rc 2.88dsf-13.1+squeeze1 install ok installed sysvinit 2.88dsf-13.1+squeeze1 install ok installed sysvinit-utils 2.88dsf-13.1+squeeze1 install ok installed tar 1.23-3 install ok installed tzdata 2014e-0squeeze1 install ok installed ucf 3.0025+nmu1 install ok installed util-linux 2.17.2-9 install ok installed xz-utils 5.0.0-2 install ok installed zlib1g 1:1.2.3.4.dfsg-3 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.5s DEBUG: Loading chroot meta data from reference-chroot-metadata.dat 0m4.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe6DqM2'] 0m4.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe6DqM2'] 0m4.7s INFO: Running scripts is_testable 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/is_testable_uninstallable'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/is_testable_uninstallable'] 0m4.7s INFO: Running scripts pre_test 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_test_exceptions'] 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_test_exceptions'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_test_root_password'] 0m4.7s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m4.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_test_root_password'] 0m4.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-cache', 'show', 'altree'] 0m4.8s DUMP: Package: altree Priority: optional Section: science Installed-Size: 588 Maintainer: Debian-Med Packaging Team Architecture: amd64 Version: 1.0.1-3 Replaces: alphy, libcutils-perl Provides: alphy, libcutils-perl Depends: libc6 (>= 2.7-1), perl (>= 5.10.0-11), perlapi-5.10.0 Suggests: altree-examples Conflicts: alphy, libcutils-perl Filename: pool/main/a/altree/altree_1.0.1-3_amd64.deb Size: 254312 MD5sum: a9f1388e51f71f39e287a71727e452da SHA1: 38a69bd97d9e5dc4191f8b0e0fb6ebfcafb2eb0e SHA256: 06bceca40ad45bddcc09c1140ac0f8c6854565e25000cdae4b21016fa9ef963b Description: program to perform phylogeny based analyses ALTree was designed to perform phylogeny based analysis: first, it allows the detection of an association between a candidate gene and a disease, and second, it enables to make hypothesis about the susceptibility loci. Homepage: http://claire.bardel.free.fr/ Tag: field::biology, field::biology:bioinformatics, implemented-in::c, implemented-in::perl, interface::commandline, role::program, role::shared-lib, scope::utility, use::analysing, use::comparing, works-with-format::plaintext 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-cache', 'show', 'altree'] 0m4.8s INFO: apt-cache knows about the following packages: altree 0m4.8s INFO: Running scripts pre_install 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_database-server'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_database-server'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_exceptions'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_exceptions'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_extras'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_extras'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-cache', 'policy'] 0m4.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://archive.debian.org/debian/ squeeze/main amd64 Packages release v=6.0.10,o=Debian,a=oldoldstable,n=squeeze,l=Debian,c=main origin archive.debian.org Pinned packages: 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-cache', 'policy'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-cache', 'policy', 'altree'] 0m4.9s DUMP: altree: Installed: (none) Candidate: 1.0.1-3 Version table: 1.0.1-3 0 500 http://archive.debian.org/debian/ squeeze/main amd64 Packages 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-cache', 'policy', 'altree'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-get', '-y', 'install', 'altree'] 0m6.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libdb4.7 libgdbm3 perl perl-modules Suggested packages: altree-examples perl-doc libterm-readline-gnu-perl libterm-readline-perl-perl make Recommended packages: netbase The following NEW packages will be installed: altree libdb4.7 libgdbm3 perl perl-modules 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 8907 kB of archives. After this operation, 37.4 MB of additional disk space will be used. Get:1 http://archive.debian.org/debian/ squeeze/main libgdbm3 amd64 1.8.3-9 [46.2 kB] Get:2 http://archive.debian.org/debian/ squeeze/main libdb4.7 amd64 4.7.25-9 [662 kB] Get:3 http://archive.debian.org/debian/ squeeze/main perl-modules all 5.10.1-17squeeze6 [3482 kB] Get:4 http://archive.debian.org/debian/ squeeze/main perl amd64 5.10.1-17squeeze6 [4462 kB] Get:5 http://archive.debian.org/debian/ squeeze/main altree amd64 1.0.1-3 [254 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8907 kB in 0s (49.3 MB/s) Selecting previously deselected package libgdbm3. (Reading database ... 6261 files and directories currently installed.) Unpacking libgdbm3 (from .../libgdbm3_1.8.3-9_amd64.deb) ... Selecting previously deselected package libdb4.7. Unpacking libdb4.7 (from .../libdb4.7_4.7.25-9_amd64.deb) ... Selecting previously deselected package perl-modules. Unpacking perl-modules (from .../perl-modules_5.10.1-17squeeze6_all.deb) ... Selecting previously deselected package perl. Unpacking perl (from .../perl_5.10.1-17squeeze6_amd64.deb) ... Selecting previously deselected package altree. Unpacking altree (from .../altree_1.0.1-3_amd64.deb) ... Setting up libgdbm3 (1.8.3-9) ... Setting up libdb4.7 (4.7.25-9) ... Setting up perl-modules (5.10.1-17squeeze6) ... Setting up perl (5.10.1-17squeeze6) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode. Setting up altree (1.0.1-3) ... 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-get', '-y', 'install', 'altree'] 0m6.0s INFO: Running scripts post_install 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_install_exceptions'] 0m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_install_exceptions'] 0m6.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe6DqM2'] 0m6.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe6DqM2'] 0m6.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpe6DqM2 to wheezy 0m6.8s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ wheezy main 0m6.8s INFO: Running scripts pre_distupgrade 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_distupgrade_exceptions'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_distupgrade_exceptions'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_distupgrade_wheezy'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_distupgrade_wheezy'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-get', 'update'] 0m8.2s DUMP: Get:1 http://mirror-ubc.debian.org wheezy Release.gpg [2373 B] Ign http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en Get:2 http://mirror-ubc.debian.org wheezy Release [191 kB] Get:3 http://mirror-ubc.debian.org wheezy/main amd64 Packages [7634 kB] Fetched 7827 kB in 0s (10.1 MB/s) Reading package lists... W: There is no public key available for the following key IDs: 7638D0442B90D010 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-get', 'update'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-get', '-yf', 'dist-upgrade'] 0m36.0s DUMP: Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: fftw2 fontconfig-config freeglut3 gcc-4.7-base libapt-pkg4.12 libblas3 libclass-isa-perl libcsiro0 libdb5.1 libdrm2 libexpat1 libfontconfig1 libfreetype6 libgd2-xpm libgfortran3 libgl1-mesa-glx libglapi-mesa libglu1-mesa libgsl0ldbl libhdf4-0-alt libibverbs1 libjpeg8 libltdl7 liblzma5 libmath-tamuanova-perl libmount1 libnuma1 libopengl-perl libopenmpi1.3 libpam-modules-bin libpdl-stats-perl libplplot11 libpng12-0 libproj0 libqhull5 libqsastime0 libquadmath0 libsemanage-common libsemanage1 libswitch-perl libtamuanova-0.2 libterm-readkey-perl libtinfo5 libtorque2 libustr-1.0-1 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-glx0 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxpm4 libxxf86vm1 multiarch-support pdl proj-data ttf-dejavu-core The following packages will be upgraded: adduser altree apt base-files base-passwd bash bsdutils coreutils dash debconf debconf-i18n debian-archive-keyring debianutils diffutils dpkg e2fslibs e2fsprogs findutils gcc-4.4-base gnupg gpgv grep gzip hostname initscripts insserv libacl1 libattr1 libblkid1 libbz2-1.0 libc-bin libc6 libcomerr2 libgcc1 libgdbm3 liblocale-gettext-perl libncurses5 libpam-modules libpam-runtime libpam0g libreadline6 libselinux1 libsepol1 libslang2 libss2 libstdc++6 libtext-charwidth-perl libtext-iconv-perl libusb-0.1-4 libuuid1 login lsb-base mawk mount ncurses-base ncurses-bin passwd perl perl-base perl-modules readline-common sed sensible-utils sysv-rc sysvinit sysvinit-utils tar tzdata ucf util-linux xz-utils zlib1g 72 upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 64.3 MB of archives. After this operation, 43.8 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main sensible-utils all 0.0.7 [8850 B] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main debianutils amd64 4.3.2 [78.9 kB] Get:3 http://mirror-ubc.debian.org/debian/ wheezy/main libc-bin amd64 2.13-38+deb7u10 [1274 kB] Get:4 http://mirror-ubc.debian.org/debian/ wheezy/main libc6 amd64 2.13-38+deb7u10 [4226 kB] Get:5 http://mirror-ubc.debian.org/debian/ wheezy/main gcc-4.7-base amd64 4.7.2-5 [144 kB] Get:6 http://mirror-ubc.debian.org/debian/ wheezy/main multiarch-support amd64 2.13-38+deb7u10 [152 kB] Get:7 http://mirror-ubc.debian.org/debian/ wheezy/main libgcc1 amd64 1:4.7.2-5 [43.1 kB] Get:8 http://mirror-ubc.debian.org/debian/ wheezy/main libsemanage-common all 2.1.6-6 [23.2 kB] Get:9 http://mirror-ubc.debian.org/debian/ wheezy/main libsepol1 amd64 2.1.4-3 [135 kB] Get:10 http://mirror-ubc.debian.org/debian/ wheezy/main libustr-1.0-1 amd64 1.0.4-3 [92.5 kB] Get:11 http://mirror-ubc.debian.org/debian/ wheezy/main libbz2-1.0 amd64 1.0.6-4 [46.5 kB] Get:12 http://mirror-ubc.debian.org/debian/ wheezy/main libselinux1 amd64 2.1.9-5 [90.6 kB] Get:13 http://mirror-ubc.debian.org/debian/ wheezy/main libsemanage1 amd64 2.1.6-6 [102 kB] Get:14 http://mirror-ubc.debian.org/debian/ wheezy/main debconf all 1.5.49 [171 kB] Get:15 http://mirror-ubc.debian.org/debian/ wheezy/main libpam0g amd64 1.1.3-7.1 [128 kB] Get:16 http://mirror-ubc.debian.org/debian/ wheezy/main libdb5.1 amd64 5.1.29-5 [723 kB] Get:17 http://mirror-ubc.debian.org/debian/ wheezy/main libpam-modules-bin amd64 1.1.3-7.1 [113 kB] Get:18 http://mirror-ubc.debian.org/debian/ wheezy/main libpam-modules amd64 1.1.3-7.1 [348 kB] Get:19 http://mirror-ubc.debian.org/debian/ wheezy/main passwd amd64 1:4.1.5.1-1 [1259 kB] Get:20 http://mirror-ubc.debian.org/debian/ wheezy/main libuuid1 amd64 2.20.1-5.3 [57.1 kB] Get:21 http://mirror-ubc.debian.org/debian/ wheezy/main libblkid1 amd64 2.20.1-5.3 [120 kB] Get:22 http://mirror-ubc.debian.org/debian/ wheezy/main libslang2 amd64 2.2.4-15 [551 kB] Get:23 http://mirror-ubc.debian.org/debian/ wheezy/main libtinfo5 amd64 5.9-10 [275 kB] Get:24 http://mirror-ubc.debian.org/debian/ wheezy/main lsb-base all 4.1+Debian8+deb7u1 [26.8 kB] Get:25 http://mirror-ubc.debian.org/debian/ wheezy/main tzdata all 2016d-0+deb7u1 [453 kB] Get:26 http://mirror-ubc.debian.org/debian/ wheezy/main liblzma5 amd64 5.1.1alpha+20120614-2 [202 kB] Get:27 http://mirror-ubc.debian.org/debian/ wheezy/main dpkg amd64 1.16.18 [2665 kB] Get:28 http://mirror-ubc.debian.org/debian/ wheezy/main util-linux amd64 2.20.1-5.3 [659 kB] Get:29 http://mirror-ubc.debian.org/debian/ wheezy/main insserv amd64 1.14.0-5 [64.8 kB] Get:30 http://mirror-ubc.debian.org/debian/ wheezy/main sysvinit-utils amd64 2.88dsf-41+deb7u1 [100 kB] Get:31 http://mirror-ubc.debian.org/debian/ wheezy/main sysv-rc all 2.88dsf-41+deb7u1 [81.8 kB] Get:32 http://mirror-ubc.debian.org/debian/ wheezy/main libmount1 amd64 2.20.1-5.3 [120 kB] Get:33 http://mirror-ubc.debian.org/debian/ wheezy/main mount amd64 2.20.1-5.3 [213 kB] Get:34 http://mirror-ubc.debian.org/debian/ wheezy/main libattr1 amd64 1:2.4.46-8 [19.8 kB] Get:35 http://mirror-ubc.debian.org/debian/ wheezy/main libacl1 amd64 2.2.51-8 [30.1 kB] Get:36 http://mirror-ubc.debian.org/debian/ wheezy/main coreutils amd64 8.13-3.5 [5628 kB] Get:37 http://mirror-ubc.debian.org/debian/ wheezy/main initscripts amd64 2.88dsf-41+deb7u1 [91.8 kB] Get:38 http://mirror-ubc.debian.org/debian/ wheezy/main base-files amd64 7.1wheezy11 [67.1 kB] Get:39 http://mirror-ubc.debian.org/debian/ wheezy/main bash amd64 4.2+dfsg-0.1+deb7u3 [1501 kB] Get:40 http://mirror-ubc.debian.org/debian/ wheezy/main dash amd64 0.5.7-3 [113 kB] Get:41 http://mirror-ubc.debian.org/debian/ wheezy/main diffutils amd64 1:3.2-6 [366 kB] Get:42 http://mirror-ubc.debian.org/debian/ wheezy/main libcomerr2 amd64 1.42.5-1.1+deb7u1 [56.1 kB] Get:43 http://mirror-ubc.debian.org/debian/ wheezy/main e2fslibs amd64 1.42.5-1.1+deb7u1 [197 kB] Get:44 http://mirror-ubc.debian.org/debian/ wheezy/main e2fsprogs amd64 1.42.5-1.1+deb7u1 [979 kB] Get:45 http://mirror-ubc.debian.org/debian/ wheezy/main findutils amd64 4.4.2-4 [694 kB] Get:46 http://mirror-ubc.debian.org/debian/ wheezy/main grep amd64 2.12-2 [454 kB] Get:47 http://mirror-ubc.debian.org/debian/ wheezy/main gzip amd64 1.5-1.1 [119 kB] Get:48 http://mirror-ubc.debian.org/debian/ wheezy/main hostname amd64 3.11 [15.0 kB] Get:49 http://mirror-ubc.debian.org/debian/ wheezy/main login amd64 1:4.1.5.1-1 [983 kB] Get:50 http://mirror-ubc.debian.org/debian/ wheezy/main ncurses-bin amd64 5.9-10 [335 kB] Get:51 http://mirror-ubc.debian.org/debian/ wheezy/main libswitch-perl all 2.16-2 [21.0 kB] Get:52 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-isa-perl all 0.36-3 [12.3 kB] Get:53 http://mirror-ubc.debian.org/debian/ wheezy/main perl-modules all 5.14.2-21+deb7u3 [3444 kB] Get:54 http://mirror-ubc.debian.org/debian/ wheezy/main libgdbm3 amd64 1.8.3-11 [46.9 kB] Get:55 http://mirror-ubc.debian.org/debian/ wheezy/main zlib1g amd64 1:1.2.7.dfsg-13 [87.4 kB] Get:56 http://mirror-ubc.debian.org/debian/ wheezy/main perl amd64 5.14.2-21+deb7u3 [4429 kB] Get:57 http://mirror-ubc.debian.org/debian/ wheezy/main libtext-charwidth-perl amd64 0.04-7+b1 [11.2 kB] Get:58 http://mirror-ubc.debian.org/debian/ wheezy/main libtext-iconv-perl amd64 1.7-5 [17.6 kB] Get:59 http://mirror-ubc.debian.org/debian/ wheezy/main libquadmath0 amd64 4.7.2-5 [125 kB] Get:60 http://mirror-ubc.debian.org/debian/ wheezy/main libgfortran3 amd64 4.7.2-5 [351 kB] Get:61 http://mirror-ubc.debian.org/debian/ wheezy/main libblas3 amd64 1.2.20110419-5 [293 kB] Get:62 http://mirror-ubc.debian.org/debian/ wheezy/main libgsl0ldbl amd64 1.15+dfsg.2-2 [1132 kB] Get:63 http://mirror-ubc.debian.org/debian/ wheezy/main libtamuanova-0.2 amd64 0.2-2 [7834 B] Get:64 http://mirror-ubc.debian.org/debian/ wheezy/main libmath-tamuanova-perl amd64 1.0.2-1 [15.7 kB] Get:65 http://mirror-ubc.debian.org/debian/ wheezy/main libterm-readkey-perl amd64 2.30-4+b2 [32.2 kB] Get:66 http://mirror-ubc.debian.org/debian/ wheezy/main libibverbs1 amd64 1.1.6-1 [35.3 kB] Get:67 http://mirror-ubc.debian.org/debian/ wheezy/main libnuma1 amd64 2.0.8~rc4-1 [33.7 kB] Get:68 http://mirror-ubc.debian.org/debian/ wheezy/main libtorque2 amd64 2.4.16+dfsg-1+deb7u4 [121 kB] Get:69 http://mirror-ubc.debian.org/debian/ wheezy/main libopenmpi1.3 amd64 1.4.5-1 [1436 kB] Get:70 http://mirror-ubc.debian.org/debian/ wheezy/main fftw2 amd64 2.1.5-1 [283 kB] Get:71 http://mirror-ubc.debian.org/debian/ wheezy/main libexpat1 amd64 2.1.0-1+deb7u2 [139 kB] Get:72 http://mirror-ubc.debian.org/debian/ wheezy/main libfreetype6 amd64 2.4.9-1.1+deb7u3 [452 kB] Get:73 http://mirror-ubc.debian.org/debian/ wheezy/main ttf-dejavu-core all 2.33-3 [1021 kB] Get:74 http://mirror-ubc.debian.org/debian/ wheezy/main fontconfig-config all 2.9.0-7.1 [233 kB] Get:75 http://mirror-ubc.debian.org/debian/ wheezy/main libfontconfig1 amd64 2.9.0-7.1 [300 kB] Get:76 http://mirror-ubc.debian.org/debian/ wheezy/main libjpeg8 amd64 8d-1+deb7u1 [138 kB] Get:77 http://mirror-ubc.debian.org/debian/ wheezy/main libpng12-0 amd64 1.2.49-1+deb7u2 [191 kB] Get:78 http://mirror-ubc.debian.org/debian/ wheezy/main libxau6 amd64 1:1.0.7-1 [18.8 kB] Get:79 http://mirror-ubc.debian.org/debian/ wheezy/main libxdmcp6 amd64 1:1.1.1-1 [26.3 kB] Get:80 http://mirror-ubc.debian.org/debian/ wheezy/main libxcb1 amd64 1.8.1-2+deb7u1 [50.2 kB] Get:81 http://mirror-ubc.debian.org/debian/ wheezy/main libx11-data all 2:1.5.0-1+deb7u2 [194 kB] Get:82 http://mirror-ubc.debian.org/debian/ wheezy/main libx11-6 amd64 2:1.5.0-1+deb7u2 [901 kB] Get:83 http://mirror-ubc.debian.org/debian/ wheezy/main libxpm4 amd64 1:3.5.10-1 [49.4 kB] Get:84 http://mirror-ubc.debian.org/debian/ wheezy/main libgd2-xpm amd64 2.0.36~rc1~dfsg-6.1+deb7u2 [234 kB] Get:85 http://mirror-ubc.debian.org/debian/ wheezy/main libdrm2 amd64 2.4.40-1~deb7u2 [459 kB] Get:86 http://mirror-ubc.debian.org/debian/ wheezy/main libglapi-mesa amd64 8.0.5-4+deb7u2 [46.8 kB] Get:87 http://mirror-ubc.debian.org/debian/ wheezy/main libx11-xcb1 amd64 2:1.5.0-1+deb7u2 [139 kB] Get:88 http://mirror-ubc.debian.org/debian/ wheezy/main libxcb-glx0 amd64 1.8.1-2+deb7u1 [32.2 kB] Get:89 http://mirror-ubc.debian.org/debian/ wheezy/main libxfixes3 amd64 1:5.0-4+deb7u1 [21.3 kB] Get:90 http://mirror-ubc.debian.org/debian/ wheezy/main libxdamage1 amd64 1:1.1.3-2 [14.3 kB] Get:91 http://mirror-ubc.debian.org/debian/ wheezy/main libxext6 amd64 2:1.3.1-2+deb7u1 [54.8 kB] Get:92 http://mirror-ubc.debian.org/debian/ wheezy/main libxxf86vm1 amd64 1:1.1.2-1+deb7u1 [19.5 kB] Get:93 http://mirror-ubc.debian.org/debian/ wheezy/main libgl1-mesa-glx amd64 8.0.5-4+deb7u2 [134 kB] Get:94 http://mirror-ubc.debian.org/debian/ wheezy/main libhdf4-0-alt amd64 4.2r4-13 [307 kB] Get:95 http://mirror-ubc.debian.org/debian/ wheezy/main libqhull5 amd64 2009.1-3 [163 kB] Get:96 http://mirror-ubc.debian.org/debian/ wheezy/main libcsiro0 amd64 5.9.9-5 [58.7 kB] Get:97 http://mirror-ubc.debian.org/debian/ wheezy/main libltdl7 amd64 2.4.2-1.1 [352 kB] Get:98 http://mirror-ubc.debian.org/debian/ wheezy/main libqsastime0 amd64 5.9.9-5 [40.7 kB] Get:99 http://mirror-ubc.debian.org/debian/ wheezy/main libplplot11 amd64 5.9.9-5 [505 kB] Get:100 http://mirror-ubc.debian.org/debian/ wheezy/main proj-data amd64 4.7.0-2 [2937 kB] Get:101 http://mirror-ubc.debian.org/debian/ wheezy/main libproj0 amd64 4.7.0-2 [138 kB] Get:102 http://mirror-ubc.debian.org/debian/ wheezy/main libxi6 amd64 2:1.6.1-1+deb7u1 [75.7 kB] Get:103 http://mirror-ubc.debian.org/debian/ wheezy/main freeglut3 amd64 2.6.0-4 [141 kB] Get:104 http://mirror-ubc.debian.org/debian/ wheezy/main libglu1-mesa amd64 8.0.5-4+deb7u2 [191 kB] Get:105 http://mirror-ubc.debian.org/debian/ wheezy/main libopengl-perl amd64 0.66+dfsg-1 [490 kB] Get:106 http://mirror-ubc.debian.org/debian/ wheezy/main pdl amd64 1:2.4.11-4 [5357 kB] Get:107 http://mirror-ubc.debian.org/debian/ wheezy/main libpdl-stats-perl amd64 0.6.2-1 [437 kB] Get:108 http://mirror-ubc.debian.org/debian/ wheezy/main altree amd64 1.2.1-1 [327 kB] Get:109 http://mirror-ubc.debian.org/debian/ wheezy/main perl-base amd64 5.14.2-21+deb7u3 [1522 kB] Get:110 http://mirror-ubc.debian.org/debian/ wheezy/main liblocale-gettext-perl amd64 1.05-7+b1 [20.4 kB] Get:111 http://mirror-ubc.debian.org/debian/ wheezy/main adduser all 3.113+nmu3 [264 kB] Get:112 http://mirror-ubc.debian.org/debian/ wheezy/main libstdc++6 amd64 4.7.2-5 [332 kB] Get:113 http://mirror-ubc.debian.org/debian/ wheezy/main ucf all 3.0025+nmu3 [70.8 kB] Get:114 http://mirror-ubc.debian.org/debian/ wheezy/main sed amd64 4.2.1-10 [251 kB] Get:115 http://mirror-ubc.debian.org/debian/ wheezy/main sysvinit amd64 2.88dsf-41+deb7u1 [133 kB] Get:116 http://mirror-ubc.debian.org/debian/ wheezy/main tar amd64 1.26+dfsg-0.1 [985 kB] Get:117 http://mirror-ubc.debian.org/debian/ wheezy/main base-passwd amd64 3.5.26 [46.3 kB] Get:118 http://mirror-ubc.debian.org/debian/ wheezy/main bsdutils amd64 1:2.20.1-5.3 [85.5 kB] Get:119 http://mirror-ubc.debian.org/debian/ wheezy/main ncurses-base all 5.9-10 [198 kB] Get:120 http://mirror-ubc.debian.org/debian/ wheezy/main gpgv amd64 1.4.12-7+deb7u7 [228 kB] Get:121 http://mirror-ubc.debian.org/debian/ wheezy/main debian-archive-keyring all 2014.3~deb7u1 [60.7 kB] Get:122 http://mirror-ubc.debian.org/debian/ wheezy/main readline-common all 6.2+dfsg-0.1 [31.9 kB] Get:123 http://mirror-ubc.debian.org/debian/ wheezy/main libreadline6 amd64 6.2+dfsg-0.1 [166 kB] Get:124 http://mirror-ubc.debian.org/debian/ wheezy/main libusb-0.1-4 amd64 2:0.1.12-20+nmu1 [23.1 kB] Get:125 http://mirror-ubc.debian.org/debian/ wheezy/main gnupg amd64 1.4.12-7+deb7u7 [1956 kB] Get:126 http://mirror-ubc.debian.org/debian/ wheezy/main libapt-pkg4.12 amd64 0.9.7.9+deb7u7 [891 kB] Get:127 http://mirror-ubc.debian.org/debian/ wheezy/main apt amd64 0.9.7.9+deb7u7 [1262 kB] Get:128 http://mirror-ubc.debian.org/debian/ wheezy/main libncurses5 amd64 5.9-10 [113 kB] Get:129 http://mirror-ubc.debian.org/debian/ wheezy/main libss2 amd64 1.42.5-1.1+deb7u1 [61.4 kB] Get:130 http://mirror-ubc.debian.org/debian/ wheezy/main mawk amd64 1.3.3-17 [90.8 kB] Get:131 http://mirror-ubc.debian.org/debian/ wheezy/main libpam-runtime all 1.1.3-7.1 [228 kB] Get:132 http://mirror-ubc.debian.org/debian/ wheezy/main xz-utils amd64 5.1.1alpha+20120614-2 [237 kB] Get:133 http://mirror-ubc.debian.org/debian/ wheezy/main debconf-i18n all 1.5.49 [237 kB] Get:134 http://mirror-ubc.debian.org/debian/ wheezy/main gcc-4.4-base amd64 4.4.7-2 [127 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 64.3 MB in 1s (34.4 MB/s) (Reading database ... 7643 files and directories currently installed.) 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Preparing to replace lsb-base 3.2-23.2squeeze1 (using .../lsb-base_4.1+Debian8+deb7u1_all.deb) ... Unpacking replacement lsb-base ... Setting up lsb-base (4.1+Debian8+deb7u1) ... (Reading database ... 7781 files and directories currently installed.) Preparing to replace tzdata 2014e-0squeeze1 (using .../tzdata_2016d-0+deb7u1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2016d-0+deb7u1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Jan 21 01:49:10 UTC 2018. Universal Time is now: Sun Jan 21 01:49:10 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Selecting previously deselected package liblzma5. (Reading database ... 7808 files and directories currently installed.) Unpacking liblzma5 (from .../liblzma5_5.1.1alpha+20120614-2_amd64.deb) ... Setting up liblzma5 (5.1.1alpha+20120614-2) ... (Reading database ... 7817 files and directories currently installed.) Preparing to replace dpkg 1.15.11 (using .../dpkg_1.16.18_amd64.deb) ... 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Selecting previously unselected package libxext6:amd64. Unpacking libxext6:amd64 (from .../libxext6_2%3a1.3.1-2+deb7u1_amd64.deb) ... Selecting previously unselected package libxxf86vm1:amd64. Unpacking libxxf86vm1:amd64 (from .../libxxf86vm1_1%3a1.1.2-1+deb7u1_amd64.deb) ... Selecting previously unselected package libgl1-mesa-glx:amd64. Unpacking libgl1-mesa-glx:amd64 (from .../libgl1-mesa-glx_8.0.5-4+deb7u2_amd64.deb) ... Selecting previously unselected package libhdf4-0-alt. Unpacking libhdf4-0-alt (from .../libhdf4-0-alt_4.2r4-13_amd64.deb) ... Selecting previously unselected package libqhull5. Unpacking libqhull5 (from .../libqhull5_2009.1-3_amd64.deb) ... Selecting previously unselected package libcsiro0. Unpacking libcsiro0 (from .../libcsiro0_5.9.9-5_amd64.deb) ... Selecting previously unselected package libltdl7:amd64. Unpacking libltdl7:amd64 (from .../libltdl7_2.4.2-1.1_amd64.deb) ... Selecting previously unselected package libqsastime0. Unpacking libqsastime0 (from .../libqsastime0_5.9.9-5_amd64.deb) ... Selecting previously unselected package libplplot11. Unpacking libplplot11 (from .../libplplot11_5.9.9-5_amd64.deb) ... Selecting previously unselected package proj-data. Unpacking proj-data (from .../proj-data_4.7.0-2_amd64.deb) ... Selecting previously unselected package libproj0. Unpacking libproj0 (from .../libproj0_4.7.0-2_amd64.deb) ... Selecting previously unselected package libxi6:amd64. Unpacking libxi6:amd64 (from .../libxi6_2%3a1.6.1-1+deb7u1_amd64.deb) ... Selecting previously unselected package freeglut3:amd64. Unpacking freeglut3:amd64 (from .../freeglut3_2.6.0-4_amd64.deb) ... Selecting previously unselected package libglu1-mesa:amd64. Unpacking libglu1-mesa:amd64 (from .../libglu1-mesa_8.0.5-4+deb7u2_amd64.deb) ... Selecting previously unselected package libopengl-perl. Unpacking libopengl-perl (from .../libopengl-perl_0.66+dfsg-1_amd64.deb) ... Selecting previously unselected package pdl. Unpacking pdl (from .../pdl_1%3a2.4.11-4_amd64.deb) ... Selecting previously unselected package libpdl-stats-perl. Unpacking libpdl-stats-perl (from .../libpdl-stats-perl_0.6.2-1_amd64.deb) ... Preparing to replace altree 1.0.1-3 (using .../altree_1.2.1-1_amd64.deb) ... Unpacking replacement altree ... Preparing to replace perl-base 5.10.1-17squeeze6 (using .../perl-base_5.14.2-21+deb7u3_amd64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-21+deb7u3) ... (Reading database ... 9916 files and directories currently installed.) Preparing to replace liblocale-gettext-perl 1.05-6 (using .../liblocale-gettext-perl_1.05-7+b1_amd64.deb) ... Unpacking replacement liblocale-gettext-perl ... Preparing to replace adduser 3.112+nmu2 (using .../adduser_3.113+nmu3_all.deb) ... Unpacking replacement adduser ... Preparing to replace libstdc++6 4.4.5-8 (using .../libstdc++6_4.7.2-5_amd64.deb) ... Unpacking replacement libstdc++6:amd64 ... Setting up libstdc++6:amd64 (4.7.2-5) ... (Reading database ... 9922 files and directories currently installed.) Preparing to replace ucf 3.0025+nmu1 (using .../ucf_3.0025+nmu3_all.deb) ... Unpacking replacement ucf ... Preparing to replace sed 4.2.1-7 (using .../sed_4.2.1-10_amd64.deb) ... Unpacking replacement sed ... Setting up sed (4.2.1-10) ... (Reading database ... 9922 files and directories currently installed.) Preparing to replace sysvinit 2.88dsf-13.1+squeeze1 (using .../sysvinit_2.88dsf-41+deb7u1_amd64.deb) ... Unpacking replacement sysvinit ... Setting up sysvinit (2.88dsf-41+deb7u1) ... Not restarting sysvinit (Reading database ... 9922 files and directories currently installed.) Preparing to replace tar 1.23-3 (using .../tar_1.26+dfsg-0.1_amd64.deb) ... Unpacking replacement tar ... Setting up tar (1.26+dfsg-0.1) ... (Reading database ... 9923 files and directories currently installed.) Preparing to replace base-passwd 3.5.22 (using .../base-passwd_3.5.26_amd64.deb) ... Unpacking replacement base-passwd ... Setting up base-passwd (3.5.26) ... (Reading database ... 9925 files and directories currently installed.) Preparing to replace bsdutils 1:2.17.2-9 (using .../bsdutils_1%3a2.20.1-5.3_amd64.deb) ... Unpacking replacement bsdutils ... Setting up bsdutils (1:2.20.1-5.3) ... (Reading database ... 9925 files and directories currently installed.) Preparing to replace ncurses-base 5.7+20100313-5 (using .../ncurses-base_5.9-10_all.deb) ... Unpacking replacement ncurses-base ... Setting up ncurses-base (5.9-10) ... Installing new version of config file /etc/terminfo/README ... (Reading database ... 9927 files and directories currently installed.) Preparing to replace gpgv 1.4.10-4+squeeze4 (using .../gpgv_1.4.12-7+deb7u7_amd64.deb) ... Unpacking replacement gpgv ... Setting up gpgv (1.4.12-7+deb7u7) ... (Reading database ... 9927 files and directories currently installed.) Preparing to replace debian-archive-keyring 2010.08.28+squeeze1 (using .../debian-archive-keyring_2014.3~deb7u1_all.deb) ... Unpacking replacement debian-archive-keyring ... Setting up debian-archive-keyring (2014.3~deb7u1) ... (Reading database ... 9934 files and directories currently installed.) Preparing to replace readline-common 6.1-3 (using .../readline-common_6.2+dfsg-0.1_all.deb) ... Unpacking replacement readline-common ... Setting up readline-common (6.2+dfsg-0.1) ... (Reading database ... 9933 files and directories currently installed.) Preparing to replace libreadline6 6.1-3 (using .../libreadline6_6.2+dfsg-0.1_amd64.deb) ... Unpacking replacement libreadline6:amd64 ... Setting up libreadline6:amd64 (6.2+dfsg-0.1) ... (Reading database ... 9933 files and directories currently installed.) Preparing to replace libusb-0.1-4 2:0.1.12-16 (using .../libusb-0.1-4_2%3a0.1.12-20+nmu1_amd64.deb) ... Unpacking replacement libusb-0.1-4:amd64 ... Setting up libusb-0.1-4:amd64 (2:0.1.12-20+nmu1) ... (Reading database ... 9932 files and directories currently installed.) Preparing to replace gnupg 1.4.10-4+squeeze4 (using .../gnupg_1.4.12-7+deb7u7_amd64.deb) ... Unpacking replacement gnupg ... Setting up gnupg (1.4.12-7+deb7u7) ... Selecting previously unselected package libapt-pkg4.12:amd64. dpkg: considering deconfiguration of apt, which would be broken by installation of libapt-pkg4.12:amd64 ... dpkg: yes, will deconfigure apt (broken by libapt-pkg4.12:amd64) (Reading database ... 9921 files and directories currently installed.) Unpacking libapt-pkg4.12:amd64 (from .../libapt-pkg4.12_0.9.7.9+deb7u7_amd64.deb) ... De-configuring apt ... Setting up libapt-pkg4.12:amd64 (0.9.7.9+deb7u7) ... (Reading database ... 9969 files and directories currently installed.) Preparing to replace apt 0.8.10.3+squeeze1 (using .../apt_0.9.7.9+deb7u7_amd64.deb) ... Unpacking replacement apt ... Setting up apt (0.9.7.9+deb7u7) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt ... gpg: key B98321F9: "Squeeze Stable Release Key " not changed gpg: key 473041FA: "Debian Archive Automatic Signing Key (6.0/squeeze) " not changed gpg: key 65FFB764: "Wheezy Stable Release Key " not changed gpg: key 46925553: "Debian Archive Automatic Signing Key (7.0/wheezy) " not changed gpg: key 518E17E1: "Jessie Stable Release Key " not changed gpg: key 2B90D010: "Debian Archive Automatic Signing Key (8/jessie) " not changed gpg: key C857C906: "Debian Security Archive Automatic Signing Key (8/jessie) " not changed gpg: Total number processed: 7 gpg: unchanged: 7 gpg: checking the trustdb gpg: WARNING: digest algorithm MD5 is deprecated gpg: please see http://www.gnupg.org/faq/weak-digest-algos.html for more information gpg: no ultimately trusted keys found (Reading database ... 9880 files and directories currently installed.) Preparing to replace libncurses5 5.7+20100313-5 (using .../libncurses5_5.9-10_amd64.deb) ... Unpacking replacement libncurses5:amd64 ... Setting up libncurses5:amd64 (5.9-10) ... (Reading database ... 9872 files and directories currently installed.) Preparing to replace libss2 1.41.12-4stable1 (using .../libss2_1.42.5-1.1+deb7u1_amd64.deb) ... Unpacking replacement libss2:amd64 ... Setting up libss2:amd64 (1.42.5-1.1+deb7u1) ... (Reading database ... 9872 files and directories currently installed.) Preparing to replace mawk 1.3.3-15 (using .../mawk_1.3.3-17_amd64.deb) ... Unpacking replacement mawk ... Preparing to replace libpam-runtime 1.1.1-6.1+squeeze1 (using .../libpam-runtime_1.1.3-7.1_all.deb) ... Unpacking replacement libpam-runtime ... Setting up libpam-runtime (1.1.3-7.1) ... (Reading database ... 9873 files and directories currently installed.) Preparing to replace xz-utils 5.0.0-2 (using .../xz-utils_5.1.1alpha+20120614-2_amd64.deb) ... Unpacking replacement xz-utils ... Setting up xz-utils (5.1.1alpha+20120614-2) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode (Reading database ... 9875 files and directories currently installed.) Preparing to replace debconf-i18n 1.5.36.1 (using .../debconf-i18n_1.5.49_all.deb) ... Unpacking replacement debconf-i18n ... Preparing to replace gcc-4.4-base 4.4.5-8 (using .../gcc-4.4-base_4.4.7-2_amd64.deb) ... Unpacking replacement gcc-4.4-base:amd64 ... Setting up libclass-isa-perl (0.36-3) ... Setting up libgdbm3:amd64 (1.8.3-11) ... Setting up libtext-charwidth-perl (0.04-7+b1) ... Setting up libtext-iconv-perl (1.7-5) ... Setting up libquadmath0:amd64 (4.7.2-5) ... Setting up libgfortran3:amd64 (4.7.2-5) ... Setting up libblas3 (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libgsl0ldbl (1.15+dfsg.2-2) ... Setting up libtamuanova-0.2 (0.2-2) ... Setting up adduser (3.113+nmu3) ... Installing new version of config file /etc/deluser.conf ... Setting up libibverbs1 (1.1.6-1) ... Setting up libnuma1 (2.0.8~rc4-1) ... Setting up libtorque2 (2.4.16+dfsg-1+deb7u4) ... Setting up libopenmpi1.3 (1.4.5-1) ... Setting up fftw2 (2.1.5-1) ... Setting up libexpat1:amd64 (2.1.0-1+deb7u2) ... Setting up libfreetype6:amd64 (2.4.9-1.1+deb7u3) ... Setting up ttf-dejavu-core (2.33-3) ... Setting up ucf (3.0025+nmu3) ... Setting up fontconfig-config (2.9.0-7.1) ... Setting up libfontconfig1:amd64 (2.9.0-7.1) ... Setting up libjpeg8:amd64 (8d-1+deb7u1) ... Setting up libpng12-0:amd64 (1.2.49-1+deb7u2) ... Setting up libxau6:amd64 (1:1.0.7-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1) ... Setting up libxcb1:amd64 (1.8.1-2+deb7u1) ... Setting up libx11-data (2:1.5.0-1+deb7u2) ... Setting up libx11-6:amd64 (2:1.5.0-1+deb7u2) ... Setting up libxpm4:amd64 (1:3.5.10-1) ... Setting up libgd2-xpm:amd64 (2.0.36~rc1~dfsg-6.1+deb7u2) ... Setting up libdrm2:amd64 (2.4.40-1~deb7u2) ... Setting up libglapi-mesa:amd64 (8.0.5-4+deb7u2) ... Setting up libx11-xcb1:amd64 (2:1.5.0-1+deb7u2) ... Setting up libxcb-glx0:amd64 (1.8.1-2+deb7u1) ... Setting up libxfixes3:amd64 (1:5.0-4+deb7u1) ... Setting up libxdamage1:amd64 (1:1.1.3-2) ... Setting up libxext6:amd64 (2:1.3.1-2+deb7u1) ... Setting up libxxf86vm1:amd64 (1:1.1.2-1+deb7u1) ... Setting up libgl1-mesa-glx:amd64 (8.0.5-4+deb7u2) ... Setting up libhdf4-0-alt (4.2r4-13) ... Setting up libqhull5 (2009.1-3) ... Setting up libcsiro0 (5.9.9-5) ... Setting up libltdl7:amd64 (2.4.2-1.1) ... Setting up libqsastime0 (5.9.9-5) ... Setting up libplplot11 (5.9.9-5) ... Setting up proj-data (4.7.0-2) ... Setting up libproj0 (4.7.0-2) ... Setting up libxi6:amd64 (2:1.6.1-1+deb7u1) ... Setting up freeglut3:amd64 (2.6.0-4) ... Setting up libglu1-mesa:amd64 (8.0.5-4+deb7u2) ... Setting up liblocale-gettext-perl (1.05-7+b1) ... Setting up mawk (1.3.3-17) ... Setting up debconf-i18n (1.5.49) ... Setting up gcc-4.4-base:amd64 (4.4.7-2) ... Setting up libswitch-perl (2.16-2) ... Setting up perl-modules (5.14.2-21+deb7u3) ... Setting up perl (5.14.2-21+deb7u3) ... Setting up libmath-tamuanova-perl (1.0.2-1) ... Setting up libterm-readkey-perl (2.30-4+b2) ... Setting up libopengl-perl (0.66+dfsg-1) ... Setting up pdl (1:2.4.11-4) ... Setting up libpdl-stats-perl (0.6.2-1) ... Setting up altree (1.2.1-1) ... 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-get', '-yf', 'dist-upgrade'] 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m36.9s DUMP: 0c96df6df725ee7ec7aebd2b6a77fb72 - 0m36.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m36.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-cache', 'show', 'altree'] 0m37.0s DUMP: Package: altree Version: 1.2.1-1 Installed-Size: 541 Maintainer: Debian Med Packaging Team Architecture: amd64 Replaces: alphy, libcutils-perl Provides: alphy, libcutils-perl Depends: libc6 (>= 2.2.5), perl (>= 5.14.2-11), perlapi-5.14.2, libmath-tamuanova-perl, libpdl-stats-perl Suggests: altree-examples Conflicts: alphy, libcutils-perl Description: program to perform phylogeny-based association and localization analysis Homepage: http://claire.bardel.free.fr/software.html Description-md5: b6b21ff883122e1527c5ccc7bb5583bd Tag: field::biology, field::biology:bioinformatics, implemented-in::c, implemented-in::perl, interface::commandline, role::program, role::shared-lib, scope::utility, use::analysing, use::comparing, works-with-format::TODO, works-with-format::plaintext, works-with::TODO Section: science Priority: optional Filename: pool/main/a/altree/altree_1.2.1-1_amd64.deb Size: 326886 MD5sum: 8bb4761b0bb5ae41a2c282e5cc1c648f SHA1: c8884ee5a217e50db75886312518ad915f8cdab2 SHA256: 894f4b918a112e89963a453d3521de72045a762af160550f432191faf85f0200 0m37.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-cache', 'show', 'altree'] 0m37.0s INFO: apt-cache knows about the following packages: altree 0m37.0s INFO: Running scripts pre_install 0m37.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_database-server'] 0m37.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_database-server'] 0m37.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_exceptions'] 0m37.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_exceptions'] 0m37.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_extras'] 0m37.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_extras'] 0m37.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_foreign_architecture'] 0m37.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_foreign_architecture'] 0m37.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m37.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m37.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-cache', 'policy'] 0m37.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m37.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-cache', 'policy'] 0m37.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-cache', 'policy', 'altree'] 0m37.0s DUMP: altree: Installed: 1.2.1-1 Candidate: 1.2.1-1 Version table: *** 1.2.1-1 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 100 /var/lib/dpkg/status 0m37.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-cache', 'policy', 'altree'] 0m37.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-get', '-y', 'install', 'altree'] 0m37.3s DUMP: Reading package lists... Building dependency tree... Reading state information... altree is already the newest version. The following package was automatically installed and is no longer required: libdb4.7 Use 'apt-get autoremove' to remove it. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-get', '-y', 'install', 'altree'] 0m37.3s INFO: Running scripts post_install 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_install_exceptions'] 0m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_install_exceptions'] 0m37.3s INFO: Running scripts post_distupgrade 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_distupgrade_exceptions'] 0m37.3s DUMP: FIXING /usr/share/keyrings/debian-archive-removed-keys.gpg~ `/usr/share/keyrings/debian-archive-removed-keys.gpg~' -> `/usr/share/keyrings/debian-archive-removed-keys.gpg' 0m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_distupgrade_exceptions'] 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_distupgrade_zz_backports'] 0m37.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_distupgrade_zz_backports'] 0m37.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe6DqM2'] 0m38.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe6DqM2'] 0m38.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe6DqM2'] 0m38.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe6DqM2'] 0m38.7s INFO: Running scripts pre_install 0m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_database-server'] 0m38.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_database-server'] 0m38.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_exceptions'] 0m38.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_exceptions'] 0m38.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_extras'] 0m38.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_extras'] 0m38.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_foreign_architecture'] 0m38.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_foreign_architecture'] 0m38.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m38.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m38.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-cache', 'policy'] 0m38.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m38.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-cache', 'policy'] 0m38.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-cache', 'policy', 'altree'] 0m38.9s DUMP: altree: Installed: 1.2.1-1 Candidate: 1.2.1-1 Version table: *** 1.2.1-1 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 100 /var/lib/dpkg/status 0m38.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-cache', 'policy', 'altree'] 0m38.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-get', '-y', 'install', 'altree=1.2.1-1'] 0m39.0s DUMP: Reading package lists... Building dependency tree... Reading state information... altree is already the newest version. The following package was automatically installed and is no longer required: libdb4.7 Use 'apt-get autoremove' to remove it. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m39.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-get', '-y', 'install', 'altree=1.2.1-1'] 0m39.0s INFO: Running scripts post_install 0m39.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_install_exceptions'] 0m39.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_install_exceptions'] 0m39.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe6DqM2'] 0m39.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe6DqM2'] 0m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m39.8s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed altree altree 1.2.1-1 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u3 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed fftw2 fftw2 2.1.5-1 install ok installed findutils findutils 4.4.2-4 install ok installed fontconfig-config fontconfig-config 2.9.0-7.1 install ok installed freeglut3:amd64 freeglut3 2.6.0-4 install ok installed gcc-4.4-base:amd64 gcc-4.4-base 4.4.7-2 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u7 install ok installed gpgv gpgv 1.4.12-7+deb7u7 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblas3 libblas3 1.2.20110419-5 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u10 install ok installed libc6:amd64 libc6 2.13-38+deb7u10 install ok installed libclass-isa-perl libclass-isa-perl 0.36-3 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libcsiro0 libcsiro0 5.9.9-5 install ok installed libdb4.7 libdb4.7 4.7.25-9 install ok installed libdb4.8 libdb4.8 4.8.30-2 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libdrm2:amd64 libdrm2 2.4.40-1~deb7u2 install ok installed libexpat1:amd64 libexpat1 2.1.0-1+deb7u2 install ok installed libfontconfig1:amd64 libfontconfig1 2.9.0-7.1 install ok installed libfreetype6:amd64 libfreetype6 2.4.9-1.1+deb7u3 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed libgd2-xpm:amd64 libgd2-xpm 2.0.36~rc1~dfsg-6.1+deb7u2 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-11 install ok installed libgfortran3:amd64 libgfortran3 4.7.2-5 install ok installed libgl1-mesa-glx:amd64 libgl1-mesa-glx 8.0.5-4+deb7u2 install ok installed libglapi-mesa:amd64 libglapi-mesa 8.0.5-4+deb7u2 install ok installed libglu1-mesa:amd64 libglu1-mesa 8.0.5-4+deb7u2 install ok installed libgsl0ldbl libgsl0ldbl 1.15+dfsg.2-2 install ok installed libhdf4-0-alt libhdf4-0-alt 4.2r4-13 install ok installed libibverbs1 libibverbs1 1.1.6-1 install ok installed libjpeg8:amd64 libjpeg8 8d-1+deb7u1 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed libltdl7:amd64 libltdl7 2.4.2-1.1 install ok installed liblzma2 liblzma2 5.0.0-2 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmath-tamuanova-perl libmath-tamuanova-perl 1.0.2-1 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libnuma1 libnuma1 2.0.8~rc4-1 install ok installed libopengl-perl libopengl-perl 0.66+dfsg-1 install ok installed libopenmpi1.3 libopenmpi1.3 1.4.5-1 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libpdl-stats-perl libpdl-stats-perl 0.6.2-1 install ok installed libplplot11 libplplot11 5.9.9-5 install ok installed libpng12-0:amd64 libpng12-0 1.2.49-1+deb7u2 install ok installed libproj0 libproj0 4.7.0-2 install ok installed libqhull5 libqhull5 2009.1-3 install ok installed libqsastime0 libqsastime0 5.9.9-5 install ok installed libquadmath0:amd64 libquadmath0 4.7.2-5 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libswitch-perl libswitch-perl 2.16-2 install ok installed libtamuanova-0.2 libtamuanova-0.2 0.2-2 install ok installed libterm-readkey-perl libterm-readkey-perl 2.30-4+b2 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libtorque2 libtorque2 2.4.16+dfsg-1+deb7u4 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed libx11-6:amd64 libx11-6 2:1.5.0-1+deb7u2 install ok installed libx11-data libx11-data 2:1.5.0-1+deb7u2 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.5.0-1+deb7u2 install ok installed libxau6:amd64 libxau6 1:1.0.7-1 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.8.1-2+deb7u1 install ok installed libxcb1:amd64 libxcb1 1.8.1-2+deb7u1 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.3-2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.1-1 install ok installed libxext6:amd64 libxext6 2:1.3.1-2+deb7u1 install ok installed libxfixes3:amd64 libxfixes3 1:5.0-4+deb7u1 install ok installed libxi6:amd64 libxi6 2:1.6.1-1+deb7u1 install ok installed libxpm4:amd64 libxpm4 1:3.5.10-1 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.2-1+deb7u1 install ok installed login login 1:4.1.5.1-1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u10 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1 install ok installed pdl pdl 1:2.4.11-4 install ok installed perl perl 5.14.2-21+deb7u3 install ok installed perl-base perl-base 5.14.2-21+deb7u3 install ok installed perl-modules perl-modules 5.14.2-21+deb7u3 install ok installed proj-data proj-data 4.7.0-2 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1 install ok installed ttf-dejavu-core ttf-dejavu-core 2.33-3 install ok installed tzdata tzdata 2016d-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m40.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', '-ac', '--ignore-obsolete'] 0m41.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', '-ac', '--ignore-obsolete'] 0m41.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m41.6s DUMP: 0.15.1 0m41.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m41.6s INFO: Running adequate version 0.15.1 now. 0m41.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'altree'] 0m41.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'altree'] 0m41.7s INFO: Running scripts pre_remove 0m41.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m41.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m41.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m42.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m42.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m43.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m43.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m43.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m43.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_remove_exceptions'] 0m43.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/pre_remove_exceptions'] 0m43.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-get', 'remove', 'libx11-data', 'libglapi-mesa:amd64', 'libfreetype6:amd64', 'libgd2-xpm:amd64', 'libxi6:amd64', 'gcc-4.4-base:amd64', 'libgl1-mesa-glx:amd64', 'libx11-6:amd64', 'libglu1-mesa:amd64', 'libfontconfig1:amd64', 'libjpeg8:amd64', 'libproj0', 'libnuma1', 'libcsiro0', 'libclass-isa-perl', 'perl-modules', 'libswitch-perl', 'libxfixes3:amd64', 'libgdbm3:amd64', 'perl', 'libopenmpi1.3', 'libquadmath0:amd64', 'libterm-readkey-perl', 'fftw2', 'libpdl-stats-perl', 'libxcb-glx0:amd64', 'libplplot11', 'libxxf86vm1:amd64', 'libopengl-perl', 'libx11-xcb1:amd64', 'libxdamage1:amd64', 'libqsastime0', 'libxdmcp6:amd64', 'libexpat1:amd64', 'libltdl7:amd64', 'libxau6:amd64', 'libxext6:amd64', 'libtorque2', 'libpng12-0:amd64', 'libhdf4-0-alt', 'libxpm4:amd64', 'libgsl0ldbl', 'ttf-dejavu-core', 'libblas3', 'libibverbs1', 'libtamuanova-0.2', 'libxcb1:amd64', 'proj-data', 'libgfortran3:amd64', 'libdrm2:amd64', 'fontconfig-config', 'freeglut3:amd64', 'pdl', 'libdb4.7', 'libdb4.8', 'libmath-tamuanova-perl', 'libqhull5', 'altree'] 0m43.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: altree fftw2 fontconfig-config freeglut3 gcc-4.4-base libblas3 libclass-isa-perl libcsiro0 libdb4.7 libdb4.8 libdrm2 libexpat1 libfontconfig1 libfreetype6 libgd2-xpm libgdbm3 libgfortran3 libgl1-mesa-glx libglapi-mesa libglu1-mesa libgsl0ldbl libhdf4-0-alt libibverbs1 libjpeg8 libltdl7 libmath-tamuanova-perl libnuma1 libopengl-perl libopenmpi1.3 libpdl-stats-perl libplplot11 libpng12-0 libproj0 libqhull5 libqsastime0 libquadmath0 libswitch-perl libtamuanova-0.2 libterm-readkey-perl libtorque2 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-glx0 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxpm4 libxxf86vm1 pdl perl perl-modules proj-data ttf-dejavu-core 0 upgraded, 0 newly installed, 58 to remove and 0 not upgraded. After this operation, 86.1 MB disk space will be freed. (Reading database ... 9886 files and directories currently installed.) Removing altree ... Removing libpdl-stats-perl ... Removing pdl ... Removing fftw2 ... Removing libgd2-xpm:amd64 ... Removing libfontconfig1:amd64 ... Removing fontconfig-config ... Removing libopengl-perl ... Removing freeglut3:amd64 ... Removing gcc-4.4-base:amd64 ... Removing libmath-tamuanova-perl ... Removing libblas3 ... Removing libterm-readkey-perl ... Removing libplplot11 ... Removing libcsiro0 ... Removing libdb4.7 ... Removing libdb4.8 ... Removing libglu1-mesa:amd64 ... Removing libgl1-mesa-glx:amd64 ... Removing libdrm2:amd64 ... Removing libexpat1:amd64 ... Removing libfreetype6:amd64 ... Removing libopenmpi1.3 ... Removing libgfortran3:amd64 ... Removing libglapi-mesa:amd64 ... Removing libtamuanova-0.2 ... Removing libgsl0ldbl ... Removing libhdf4-0-alt ... Removing libibverbs1 ... Removing libjpeg8:amd64 ... Removing libltdl7:amd64 ... Removing libnuma1 ... Removing libpng12-0:amd64 ... Removing libproj0 ... Removing libqhull5 ... Removing libqsastime0 ... Removing libquadmath0:amd64 ... Removing libtorque2 ... Removing libxxf86vm1:amd64 ... Removing libxpm4:amd64 ... Removing libxi6:amd64 ... Removing libxdamage1:amd64 ... Removing libxfixes3:amd64 ... Removing libxext6:amd64 ... Removing libx11-xcb1:amd64 ... Removing libx11-6:amd64 ... Removing libx11-data ... Removing libxcb-glx0:amd64 ... Removing libxcb1:amd64 ... Removing libxau6:amd64 ... Removing libxdmcp6:amd64 ... Removing proj-data ... Removing ttf-dejavu-core ... Removing perl ... Removing perl-modules ... Removing libswitch-perl ... Removing libclass-isa-perl ... Removing libgdbm3:amd64 ... 0m43.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-get', 'remove', 'libx11-data', 'libglapi-mesa:amd64', 'libfreetype6:amd64', 'libgd2-xpm:amd64', 'libxi6:amd64', 'gcc-4.4-base:amd64', 'libgl1-mesa-glx:amd64', 'libx11-6:amd64', 'libglu1-mesa:amd64', 'libfontconfig1:amd64', 'libjpeg8:amd64', 'libproj0', 'libnuma1', 'libcsiro0', 'libclass-isa-perl', 'perl-modules', 'libswitch-perl', 'libxfixes3:amd64', 'libgdbm3:amd64', 'perl', 'libopenmpi1.3', 'libquadmath0:amd64', 'libterm-readkey-perl', 'fftw2', 'libpdl-stats-perl', 'libxcb-glx0:amd64', 'libplplot11', 'libxxf86vm1:amd64', 'libopengl-perl', 'libx11-xcb1:amd64', 'libxdamage1:amd64', 'libqsastime0', 'libxdmcp6:amd64', 'libexpat1:amd64', 'libltdl7:amd64', 'libxau6:amd64', 'libxext6:amd64', 'libtorque2', 'libpng12-0:amd64', 'libhdf4-0-alt', 'libxpm4:amd64', 'libgsl0ldbl', 'ttf-dejavu-core', 'libblas3', 'libibverbs1', 'libtamuanova-0.2', 'libxcb1:amd64', 'proj-data', 'libgfortran3:amd64', 'libdrm2:amd64', 'fontconfig-config', 'freeglut3:amd64', 'pdl', 'libdb4.7', 'libdb4.8', 'libmath-tamuanova-perl', 'libqhull5', 'altree'] 0m43.8s INFO: Running scripts post_remove 0m43.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_remove_exceptions'] 0m43.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_remove_exceptions'] 0m43.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'dpkg', '--purge', 'libx11-data', 'libglapi-mesa:amd64', 'libfreetype6:amd64', 'libgd2-xpm:amd64', 'libxi6:amd64', 'gcc-4.4-base:amd64', 'libgl1-mesa-glx:amd64', 'libx11-6:amd64', 'libglu1-mesa:amd64', 'libfontconfig1:amd64', 'libjpeg8:amd64', 'libproj0', 'libnuma1', 'libcsiro0', 'libclass-isa-perl', 'perl-modules', 'libswitch-perl', 'libxfixes3:amd64', 'libgdbm3:amd64', 'perl', 'libopenmpi1.3', 'libquadmath0:amd64', 'libterm-readkey-perl', 'fftw2', 'libpdl-stats-perl', 'libxcb-glx0:amd64', 'libplplot11', 'libxxf86vm1:amd64', 'libopengl-perl', 'libx11-xcb1:amd64', 'libxdamage1:amd64', 'libqsastime0', 'libxdmcp6:amd64', 'libexpat1:amd64', 'libltdl7:amd64', 'libxau6:amd64', 'libxext6:amd64', 'libtorque2', 'libpng12-0:amd64', 'libhdf4-0-alt', 'libxpm4:amd64', 'libgsl0ldbl', 'ttf-dejavu-core', 'libblas3', 'libibverbs1', 'libtamuanova-0.2', 'libxcb1:amd64', 'proj-data', 'libgfortran3:amd64', 'libdrm2:amd64', 'fontconfig-config', 'freeglut3:amd64', 'pdl', 'libdb4.7', 'libdb4.8', 'libmath-tamuanova-perl', 'libqhull5'] 0m44.4s DUMP: dpkg: warning: ignoring request to remove libx11-data which isn't installed (Reading database ... 6819 files and directories currently installed.) Removing libglapi-mesa:amd64 ... Purging configuration files for libglapi-mesa:amd64 ... Removing libfreetype6:amd64 ... Purging configuration files for libfreetype6:amd64 ... Removing libgd2-xpm:amd64 ... Purging configuration files for libgd2-xpm:amd64 ... Removing libxi6:amd64 ... Purging configuration files for libxi6:amd64 ... dpkg: warning: ignoring request to remove gcc-4.4-base which isn't installed Removing libgl1-mesa-glx:amd64 ... Purging configuration files for libgl1-mesa-glx:amd64 ... Removing libx11-6:amd64 ... Purging configuration files for libx11-6:amd64 ... Removing libglu1-mesa:amd64 ... Purging configuration files for libglu1-mesa:amd64 ... Removing libfontconfig1:amd64 ... Purging configuration files for libfontconfig1:amd64 ... dpkg: warning: ignoring request to remove libjpeg8 which isn't installed Removing libproj0 ... Purging configuration files for libproj0 ... Removing libnuma1 ... Purging configuration files for libnuma1 ... Removing libcsiro0 ... Purging configuration files for libcsiro0 ... dpkg: warning: ignoring request to remove libclass-isa-perl which isn't installed Removing perl-modules ... Purging configuration files for perl-modules ... dpkg: warning: ignoring request to remove libswitch-perl which isn't installed Removing libxfixes3:amd64 ... Purging configuration files for libxfixes3:amd64 ... Removing libgdbm3:amd64 ... Purging configuration files for libgdbm3:amd64 ... dpkg: warning: ignoring request to remove perl which isn't installed Removing libopenmpi1.3 ... Purging configuration files for libopenmpi1.3 ... Removing libquadmath0:amd64 ... Purging configuration files for libquadmath0:amd64 ... dpkg: warning: ignoring request to remove libterm-readkey-perl which isn't installed Removing fftw2 ... Purging configuration files for fftw2 ... dpkg: warning: ignoring request to remove libpdl-stats-perl which isn't installed Removing libxcb-glx0:amd64 ... Purging configuration files for libxcb-glx0:amd64 ... Removing libplplot11 ... Purging configuration files for libplplot11 ... Removing libxxf86vm1:amd64 ... Purging configuration files for libxxf86vm1:amd64 ... dpkg: warning: ignoring request to remove libopengl-perl which isn't installed Removing libx11-xcb1:amd64 ... Purging configuration files for libx11-xcb1:amd64 ... Removing libxdamage1:amd64 ... Purging configuration files for libxdamage1:amd64 ... Removing libqsastime0 ... Purging configuration files for libqsastime0 ... Removing libxdmcp6:amd64 ... Purging configuration files for libxdmcp6:amd64 ... Removing libexpat1:amd64 ... Purging configuration files for libexpat1:amd64 ... Removing libltdl7:amd64 ... Purging configuration files for libltdl7:amd64 ... Removing libxau6:amd64 ... Purging configuration files for libxau6:amd64 ... Removing libxext6:amd64 ... Purging configuration files for libxext6:amd64 ... Removing libtorque2 ... Purging configuration files for libtorque2 ... Removing libpng12-0:amd64 ... Purging configuration files for libpng12-0:amd64 ... Removing libhdf4-0-alt ... Purging configuration files for libhdf4-0-alt ... Removing libxpm4:amd64 ... Purging configuration files for libxpm4:amd64 ... Removing libgsl0ldbl ... Purging configuration files for libgsl0ldbl ... dpkg: warning: ignoring request to remove ttf-dejavu-core which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed Removing libibverbs1 ... Purging configuration files for libibverbs1 ... Removing libtamuanova-0.2 ... Purging configuration files for libtamuanova-0.2 ... Removing libxcb1:amd64 ... Purging configuration files for libxcb1:amd64 ... dpkg: warning: ignoring request to remove proj-data which isn't installed Removing libgfortran3:amd64 ... Purging configuration files for libgfortran3:amd64 ... Removing libdrm2:amd64 ... Purging configuration files for libdrm2:amd64 ... Removing fontconfig-config ... Purging configuration files for fontconfig-config ... Removing freeglut3:amd64 ... Purging configuration files for freeglut3:amd64 ... Removing pdl ... Purging configuration files for pdl ... dpkg: warning: ignoring request to remove libdb4.7 which isn't installed dpkg: warning: ignoring request to remove libdb4.8 which isn't installed dpkg: warning: ignoring request to remove libmath-tamuanova-perl which isn't installed Removing libqhull5 ... Purging configuration files for libqhull5 ... 0m44.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'dpkg', '--purge', 'libx11-data', 'libglapi-mesa:amd64', 'libfreetype6:amd64', 'libgd2-xpm:amd64', 'libxi6:amd64', 'gcc-4.4-base:amd64', 'libgl1-mesa-glx:amd64', 'libx11-6:amd64', 'libglu1-mesa:amd64', 'libfontconfig1:amd64', 'libjpeg8:amd64', 'libproj0', 'libnuma1', 'libcsiro0', 'libclass-isa-perl', 'perl-modules', 'libswitch-perl', 'libxfixes3:amd64', 'libgdbm3:amd64', 'perl', 'libopenmpi1.3', 'libquadmath0:amd64', 'libterm-readkey-perl', 'fftw2', 'libpdl-stats-perl', 'libxcb-glx0:amd64', 'libplplot11', 'libxxf86vm1:amd64', 'libopengl-perl', 'libx11-xcb1:amd64', 'libxdamage1:amd64', 'libqsastime0', 'libxdmcp6:amd64', 'libexpat1:amd64', 'libltdl7:amd64', 'libxau6:amd64', 'libxext6:amd64', 'libtorque2', 'libpng12-0:amd64', 'libhdf4-0-alt', 'libxpm4:amd64', 'libgsl0ldbl', 'ttf-dejavu-core', 'libblas3', 'libibverbs1', 'libtamuanova-0.2', 'libxcb1:amd64', 'proj-data', 'libgfortran3:amd64', 'libdrm2:amd64', 'fontconfig-config', 'freeglut3:amd64', 'pdl', 'libdb4.7', 'libdb4.8', 'libmath-tamuanova-perl', 'libqhull5'] 0m44.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'dpkg', '--purge', 'altree'] 0m44.4s DUMP: dpkg: warning: ignoring request to remove altree which isn't installed 0m44.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'dpkg', '--purge', 'altree'] 0m44.4s INFO: Running scripts post_purge 0m44.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_purge_exceptions'] 0m44.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_purge_exceptions'] 0m44.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'dpkg', '--purge', '--pending'] 0m44.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'dpkg', '--purge', '--pending'] 0m44.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'dpkg', '--remove', '--pending'] 0m44.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'dpkg', '--remove', '--pending'] 0m44.5s INFO: Running scripts post_test 0m44.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_test_exceptions'] 0m44.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'tmp/scripts/post_test_exceptions'] 0m44.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe6DqM2'] 0m45.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpe6DqM2'] 0m45.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'dpkg-divert', '--list'] 0m45.1s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m45.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'dpkg-divert', '--list'] 0m45.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-get', 'clean'] 0m45.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpe6DqM2', 'apt-get', 'clean'] 0m45.1s DEBUG: Recording chroot state 0m46.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpe6DqM2/dev/shm'] 0m46.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpe6DqM2/dev/shm'] 0m46.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpe6DqM2/dev/console'] 0m46.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpe6DqM2/dev/console'] 0m46.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpe6DqM2/dev/ptmx'] 0m46.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpe6DqM2/dev/ptmx'] 0m46.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpe6DqM2/dev/pts'] 0m46.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpe6DqM2/dev/pts'] 0m46.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpe6DqM2/proc'] 0m46.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpe6DqM2/proc'] 0m46.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpe6DqM2'] 0m46.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpe6DqM2'] 0m46.9s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpe6DqM2 0m46.9s INFO: PASS: Upgrading between Debian distributions. 0m46.9s INFO: PASS: All tests. 0m46.9s INFO: piuparts run ends. ret=0 End: 2018-01-21 01:49:32 UTC