Start: 2017-12-13 14:39:43 UTC [squeeze] Package: shogun-python Priority: optional Section: science Installed-Size: 448 Maintainer: Soeren Sonnenburg Architecture: amd64 Source: shogun Version: 0.9.3-4 Depends: libatlas3gf-base, libc6 (>= 2.2.5), libgcc1 (>= 1:4.1.1), libglpk0 (>= 4.30), libhdf5-serial-1.8.4 | libhdf5-1.8.4, liblzma2 (>= 4.999.9beta), liblzo2-2, libpython2.6 (>= 2.6), libshogun8 (= 0.9.3-4), libshogunui5 (= 0.9.3-4), libstdc++6 (>= 4.1.1), zlib1g (>= 1:1.1.4), python (<< 2.7), python (>= 2.6), python-numpy (<< 1:1.5), python-numpy (>= 1:1.4.1), python-support (>= 0.90.0) Recommends: python-matplotlib Filename: pool/main/s/shogun/shogun-python_0.9.3-4_amd64.deb Size: 53374 MD5sum: c3e9d3f08209ffd8cacee1b06d5beba9 SHA1: 1f40cac54cb52d15f30225ee2b23a06fa0c908e8 SHA256: 3feaaa0e185ecf215ea07905ec28aad4496195f416788774712ad285d3e51062 Description: Large Scale Machine Learning Toolbox SHOGUN - is a new machine learning toolbox with focus on large scale kernel methods and especially on Support Vector Machines (SVM) with focus to bioinformatics. It provides a generic SVM object interfacing to several different SVM implementations. Each of the SVMs can be combined with a variety of the many kernels implemented. It can deal with weighted linear combination of a number of sub-kernels, each of which not necessarily working on the same domain, where an optimal sub-kernel weighting can be learned using Multiple Kernel Learning. Apart from SVM 2-class classification and regression problems, a number of linear methods like Linear Discriminant Analysis (LDA), Linear Programming Machine (LPM), (Kernel) Perceptrons and also algorithms to train hidden markov models are implemented. The input feature-objects can be dense, sparse or strings and of type int/short/double/char and can be converted into different feature types. Chains of preprocessors (e.g. substracting the mean) can be attached to each feature object allowing for on-the-fly pre-processing. . SHOGUN comes in different flavours, a stand-a-lone version and also with interfaces to Matlab(tm), R, Octave, Readline and Python. This is the static Python package without using swig. Homepage: http://www.shogun-toolbox.org [wheezy] Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --no-check-valid-until --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze -d wheezy -B reference-chroot-metadata.dat --apt shogun-python=None 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.83~201711291402~0.82-24-gd0ad6d8b starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge -i /etc/shells --no-check-valid-until --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz -d squeeze -d wheezy -B reference-chroot-metadata.dat --apt shogun-python=None 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.9.0-4-amd64 #1 SMP Debian 4.9.65-3 (2017-12-03) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpTss_bF 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpTss_bF 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpTss_bF', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpTss_bF', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/squeeze_amd64.tar.gz'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpTss_bF/proc'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpTss_bF/proc'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpTss_bF/dev/pts'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpTss_bF/dev/pts'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpTss_bF/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpTss_bF/dev/ptmx'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpTss_bF/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpTss_bF/dev/ptmx'] 0m1.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpTss_bF/dev/console'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpTss_bF/dev/console'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpTss_bF/dev/shm'] 0m1.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpTss_bF/dev/shm'] 0m1.5s DEBUG: sources.list: deb http://archive.debian.org/debian squeeze main 0m1.5s DEBUG: Created policy-rc.d and chmodded it. 0m1.5s DEBUG: Created resolv.conf. 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpTss_bF/tmp/scripts/ 0m1.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts-wheezy to /srv/piuparts.debian.org/tmp/tmpTss_bF/tmp/scripts/ 0m1.5s INFO: Running scripts post_chroot_unpack 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'apt-get', 'update'] 0m1.5s DUMP: Hit http://archive.debian.org squeeze Release.gpg Ign http://archive.debian.org/debian/ squeeze/main Translation-en Hit http://archive.debian.org squeeze Release Hit http://archive.debian.org squeeze/main amd64 Packages Reading package lists... 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'apt-get', 'update'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'apt-get', '-yf', 'dist-upgrade'] 0m1.6s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'apt-get', '-yf', 'dist-upgrade'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.8s DUMP: 6a0e4d3b374fdc6be02fc5f39fbf3166 - 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.8s INFO: Running scripts post_setup 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_setup_dummy_users'] 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_setup_dummy_users'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_setup_forbid_home'] 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_setup_forbid_home'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_setup_minimize'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_setup_minimize'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m2.8s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 320 kB of archives. After this operation, 1532 kB of additional disk space will be used. Get:1 http://archive.debian.org/debian/ squeeze/main adduser all 3.112+nmu2 [250 kB] Get:2 http://archive.debian.org/debian/ squeeze/main ucf all 3.0025+nmu1 [69.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 320 kB in 0s (0 B/s) Selecting previously deselected package adduser. (Reading database ... 6138 files and directories currently installed.) Unpacking adduser (from .../adduser_3.112+nmu2_all.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu1_all.deb) ... Moving old data out of the way Setting up adduser (3.112+nmu2) ... Setting up ucf (3.0025+nmu1) ... 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_setup_zz_backports'] 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_setup_zz_backports'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m2.8s DUMP: install ok installed adduser 3.112+nmu2 install ok installed apt 0.8.10.3+squeeze1 install ok installed base-files 6.0squeeze10 install ok installed base-passwd 3.5.22 install ok installed bash 4.1-3 install ok installed bsdutils 1:2.17.2-9 install ok installed coreutils 8.5-1 install ok installed dash 0.5.5.1-7.4 install ok installed debconf 1.5.36.1 install ok installed debconf-i18n 1.5.36.1 install ok installed debian-archive-keyring 2010.08.28+squeeze1 install ok installed debianutils 3.4 install ok installed diffutils 1:3.0-1 install ok installed dpkg 1.15.11 install ok installed e2fslibs 1.41.12-4stable1 install ok installed e2fsprogs 1.41.12-4stable1 install ok installed findutils 4.4.2-1+b1 install ok installed gcc-4.4-base 4.4.5-8 install ok installed gnupg 1.4.10-4+squeeze4 install ok installed gpgv 1.4.10-4+squeeze4 install ok installed grep 2.6.3-3+squeeze1 install ok installed gzip 1.3.12-9+squeeze1 install ok installed hostname 3.04 install ok installed initscripts 2.88dsf-13.1+squeeze1 install ok installed insserv 1.14.0-2 install ok installed libacl1 2.2.49-4 install ok installed libattr1 1:2.4.44-2 install ok installed libblkid1 2.17.2-9 install ok installed libbz2-1.0 1.0.5-6+squeeze1 install ok installed libc-bin 2.11.3-4 install ok installed libc6 2.11.3-4 install ok installed libcomerr2 1.41.12-4stable1 install ok installed libdb4.8 4.8.30-2 install ok installed libgcc1 1:4.4.5-8 install ok installed liblocale-gettext-perl 1.05-6 install ok installed liblzma2 5.0.0-2 install ok installed libncurses5 5.7+20100313-5 install ok installed libpam-modules 1.1.1-6.1+squeeze1 install ok installed libpam-runtime 1.1.1-6.1+squeeze1 install ok installed libpam0g 1.1.1-6.1+squeeze1 install ok installed libreadline6 6.1-3 install ok installed libselinux1 2.0.96-1 install ok installed libsepol1 2.0.41-1 install ok installed libslang2 2.2.2-4 install ok installed libss2 1.41.12-4stable1 install ok installed libstdc++6 4.4.5-8 install ok installed libtext-charwidth-perl 0.04-6 install ok installed libtext-iconv-perl 1.7-2 install ok installed libtext-wrapi18n-perl 0.06-7 install ok installed libusb-0.1-4 2:0.1.12-16 install ok installed libuuid1 2.17.2-9 install ok installed login 1:4.1.4.2+svn3283-2+squeeze1 install ok installed lsb-base 3.2-23.2squeeze1 install ok installed mawk 1.3.3-15 install ok installed mount 2.17.2-9 install ok installed ncurses-base 5.7+20100313-5 install ok installed ncurses-bin 5.7+20100313-5 install ok installed passwd 1:4.1.4.2+svn3283-2+squeeze1 install ok installed perl-base 5.10.1-17squeeze6 install ok installed readline-common 6.1-3 install ok installed sed 4.2.1-7 install ok installed sensible-utils 0.0.4 install ok installed sysv-rc 2.88dsf-13.1+squeeze1 install ok installed sysvinit 2.88dsf-13.1+squeeze1 install ok installed sysvinit-utils 2.88dsf-13.1+squeeze1 install ok installed tar 1.23-3 install ok installed tzdata 2014e-0squeeze1 install ok installed ucf 3.0025+nmu1 install ok installed util-linux 2.17.2-9 install ok installed xz-utils 5.0.0-2 install ok installed zlib1g 1:1.2.3.4.dfsg-3 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m2.8s DEBUG: Loading chroot meta data from reference-chroot-metadata.dat 0m3.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpTss_bF'] 0m3.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpTss_bF'] 0m3.5s INFO: Running scripts is_testable 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/is_testable_uninstallable'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/is_testable_uninstallable'] 0m3.6s INFO: Running scripts pre_test 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_test_exceptions'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_test_exceptions'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_test_root_password'] 0m3.6s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_test_root_password'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'apt-cache', 'show', 'shogun-python'] 0m3.6s DUMP: Package: shogun-python Priority: optional Section: science Installed-Size: 448 Maintainer: Soeren Sonnenburg Architecture: amd64 Source: shogun Version: 0.9.3-4 Depends: libatlas3gf-base, libc6 (>= 2.2.5), libgcc1 (>= 1:4.1.1), libglpk0 (>= 4.30), libhdf5-serial-1.8.4 | libhdf5-1.8.4, liblzma2 (>= 4.999.9beta), liblzo2-2, libpython2.6 (>= 2.6), libshogun8 (= 0.9.3-4), libshogunui5 (= 0.9.3-4), libstdc++6 (>= 4.1.1), zlib1g (>= 1:1.1.4), python (<< 2.7), python (>= 2.6), python-numpy (<< 1:1.5), python-numpy (>= 1:1.4.1), python-support (>= 0.90.0) Recommends: python-matplotlib Filename: pool/main/s/shogun/shogun-python_0.9.3-4_amd64.deb Size: 53374 MD5sum: c3e9d3f08209ffd8cacee1b06d5beba9 SHA1: 1f40cac54cb52d15f30225ee2b23a06fa0c908e8 SHA256: 3feaaa0e185ecf215ea07905ec28aad4496195f416788774712ad285d3e51062 Description: Large Scale Machine Learning Toolbox SHOGUN - is a new machine learning toolbox with focus on large scale kernel methods and especially on Support Vector Machines (SVM) with focus to bioinformatics. It provides a generic SVM object interfacing to several different SVM implementations. Each of the SVMs can be combined with a variety of the many kernels implemented. It can deal with weighted linear combination of a number of sub-kernels, each of which not necessarily working on the same domain, where an optimal sub-kernel weighting can be learned using Multiple Kernel Learning. Apart from SVM 2-class classification and regression problems, a number of linear methods like Linear Discriminant Analysis (LDA), Linear Programming Machine (LPM), (Kernel) Perceptrons and also algorithms to train hidden markov models are implemented. The input feature-objects can be dense, sparse or strings and of type int/short/double/char and can be converted into different feature types. Chains of preprocessors (e.g. substracting the mean) can be attached to each feature object allowing for on-the-fly pre-processing. . SHOGUN comes in different flavours, a stand-a-lone version and also with interfaces to Matlab(tm), R, Octave, Readline and Python. This is the static Python package without using swig. Homepage: http://www.shogun-toolbox.org 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'apt-cache', 'show', 'shogun-python'] 0m3.6s INFO: apt-cache knows about the following packages: shogun-python 0m3.6s INFO: Running scripts pre_install 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_install_database-server'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_install_database-server'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_install_exceptions'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_install_exceptions'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_install_extras'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_install_extras'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'apt-cache', 'policy'] 0m3.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://archive.debian.org/debian/ squeeze/main amd64 Packages release v=6.0.10,o=Debian,a=oldoldstable,n=squeeze,l=Debian,c=main origin archive.debian.org Pinned packages: 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'apt-cache', 'policy'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'apt-cache', 'policy', 'shogun-python'] 0m3.7s DUMP: shogun-python: Installed: (none) Candidate: 0.9.3-4 Version table: 0.9.3-4 0 500 http://archive.debian.org/debian/ squeeze/main amd64 Packages 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'apt-cache', 'policy', 'shogun-python'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'apt-get', '-y', 'install', 'shogun-python'] 0m7.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libatlas3gf-base libexpat1 libgfortran3 libglpk0 libgmp3c2 libhdf5-serial-1.8.4 libltdl7 liblzo2-2 libncursesw5 libpython2.6 libshogun8 libshogunui5 libsqlite3-0 libssl0.9.8 mime-support python python-minimal python-numpy python-support python2.6 python2.6-minimal Suggested packages: libblas3gf liblapack3gf libiodbc2-dev libmysqlclient-dev python-doc python-tk python-profiler python-numpy-doc python-numpy-dbg python-nose python-dev gfortran python2.6-doc python2.6-profiler binutils binfmt-support Recommended packages: libgpm2 file python-matplotlib The following NEW packages will be installed: libatlas3gf-base libexpat1 libgfortran3 libglpk0 libgmp3c2 libhdf5-serial-1.8.4 libltdl7 liblzo2-2 libncursesw5 libpython2.6 libshogun8 libshogunui5 libsqlite3-0 libssl0.9.8 mime-support python python-minimal python-numpy python-support python2.6 python2.6-minimal shogun-python 0 upgraded, 22 newly installed, 0 to remove and 0 not upgraded. Need to get 19.5 MB of archives. After this operation, 60.4 MB of additional disk space will be used. Get:1 http://archive.debian.org/debian/ squeeze/main libncursesw5 amd64 5.7+20100313-5 [390 kB] Get:2 http://archive.debian.org/debian/ squeeze/main libssl0.9.8 amd64 0.9.8o-4squeeze14 [1002 kB] Get:3 http://archive.debian.org/debian/ squeeze/main libsqlite3-0 amd64 3.7.3-1 [397 kB] Get:4 http://archive.debian.org/debian/ squeeze/main mime-support all 3.48-1 [34.2 kB] Get:5 http://archive.debian.org/debian/ squeeze/main python2.6-minimal amd64 2.6.6-8+b1 [1520 kB] Get:6 http://archive.debian.org/debian/ squeeze/main libexpat1 amd64 2.0.1-7+squeeze1 [138 kB] Get:7 http://archive.debian.org/debian/ squeeze/main python2.6 amd64 2.6.6-8+b1 [2455 kB] Get:8 http://archive.debian.org/debian/ squeeze/main python-minimal all 2.6.6-3+squeeze7 [33.8 kB] Get:9 http://archive.debian.org/debian/ squeeze/main python all 2.6.6-3+squeeze7 [169 kB] Get:10 http://archive.debian.org/debian/ squeeze/main python-support all 1.0.10 [33.0 kB] Get:11 http://archive.debian.org/debian/ squeeze/main libgfortran3 amd64 4.4.5-8 [291 kB] Get:12 http://archive.debian.org/debian/ squeeze/main libatlas3gf-base amd64 3.8.3-27 [6200 kB] Get:13 http://archive.debian.org/debian/ squeeze/main libgmp3c2 amd64 2:4.3.2+dfsg-1 [313 kB] Get:14 http://archive.debian.org/debian/ squeeze/main libltdl7 amd64 2.2.6b-2 [296 kB] Get:15 http://archive.debian.org/debian/ squeeze/main libglpk0 amd64 4.43-1 [446 kB] Get:16 http://archive.debian.org/debian/ squeeze/main libhdf5-serial-1.8.4 amd64 1.8.4-patch1-2 [1479 kB] Get:17 http://archive.debian.org/debian/ squeeze/main liblzo2-2 amd64 2.03-2 [59.6 kB] Get:18 http://archive.debian.org/debian/ squeeze/main libpython2.6 amd64 2.6.6-8+b1 [1077 kB] Get:19 http://archive.debian.org/debian/ squeeze/main libshogun8 amd64 0.9.3-4 [844 kB] Get:20 http://archive.debian.org/debian/ squeeze/main libshogunui5 amd64 0.9.3-4 [233 kB] Get:21 http://archive.debian.org/debian/ squeeze/main python-numpy amd64 1:1.4.1-5 [2080 kB] Get:22 http://archive.debian.org/debian/ squeeze/main shogun-python amd64 0.9.3-4 [53.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.5 MB in 0s (58.8 MB/s) Selecting previously deselected package libncursesw5. (Reading database ... 6261 files and directories currently installed.) Unpacking libncursesw5 (from .../libncursesw5_5.7+20100313-5_amd64.deb) ... Selecting previously deselected package libssl0.9.8. Unpacking libssl0.9.8 (from .../libssl0.9.8_0.9.8o-4squeeze14_amd64.deb) ... Selecting previously deselected package libsqlite3-0. Unpacking libsqlite3-0 (from .../libsqlite3-0_3.7.3-1_amd64.deb) ... Selecting previously deselected package mime-support. Unpacking mime-support (from .../mime-support_3.48-1_all.deb) ... Selecting previously deselected package python2.6-minimal. Unpacking python2.6-minimal (from .../python2.6-minimal_2.6.6-8+b1_amd64.deb) ... Selecting previously deselected package libexpat1. Unpacking libexpat1 (from .../libexpat1_2.0.1-7+squeeze1_amd64.deb) ... Selecting previously deselected package python2.6. Unpacking python2.6 (from .../python2.6_2.6.6-8+b1_amd64.deb) ... Selecting previously deselected package python-minimal. Unpacking python-minimal (from .../python-minimal_2.6.6-3+squeeze7_all.deb) ... Selecting previously deselected package python. Unpacking python (from .../python_2.6.6-3+squeeze7_all.deb) ... Selecting previously deselected package python-support. Unpacking python-support (from .../python-support_1.0.10_all.deb) ... Selecting previously deselected package libgfortran3. Unpacking libgfortran3 (from .../libgfortran3_4.4.5-8_amd64.deb) ... Selecting previously deselected package libatlas3gf-base. Unpacking libatlas3gf-base (from .../libatlas3gf-base_3.8.3-27_amd64.deb) ... Selecting previously deselected package libgmp3c2. Unpacking libgmp3c2 (from .../libgmp3c2_2%3a4.3.2+dfsg-1_amd64.deb) ... Selecting previously deselected package libltdl7. Unpacking libltdl7 (from .../libltdl7_2.2.6b-2_amd64.deb) ... Selecting previously deselected package libglpk0. Unpacking libglpk0 (from .../libglpk0_4.43-1_amd64.deb) ... Selecting previously deselected package libhdf5-serial-1.8.4. Unpacking libhdf5-serial-1.8.4 (from .../libhdf5-serial-1.8.4_1.8.4-patch1-2_amd64.deb) ... Selecting previously deselected package liblzo2-2. Unpacking liblzo2-2 (from .../liblzo2-2_2.03-2_amd64.deb) ... Selecting previously deselected package libpython2.6. Unpacking libpython2.6 (from .../libpython2.6_2.6.6-8+b1_amd64.deb) ... Selecting previously deselected package libshogun8. Unpacking libshogun8 (from .../libshogun8_0.9.3-4_amd64.deb) ... Selecting previously deselected package libshogunui5. Unpacking libshogunui5 (from .../libshogunui5_0.9.3-4_amd64.deb) ... Selecting previously deselected package python-numpy. Unpacking python-numpy (from .../python-numpy_1%3a1.4.1-5_amd64.deb) ... Selecting previously deselected package shogun-python. Unpacking shogun-python (from .../shogun-python_0.9.3-4_amd64.deb) ... Setting up libncursesw5 (5.7+20100313-5) ... Setting up libssl0.9.8 (0.9.8o-4squeeze14) ... Setting up libsqlite3-0 (3.7.3-1) ... Setting up mime-support (3.48-1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up python2.6-minimal (2.6.6-8+b1) ... Setting up libexpat1 (2.0.1-7+squeeze1) ... Setting up python2.6 (2.6.6-8+b1) ... Setting up python-minimal (2.6.6-3+squeeze7) ... Setting up python (2.6.6-3+squeeze7) ... Setting up python-support (1.0.10) ... Setting up libgfortran3 (4.4.5-8) ... Setting up libatlas3gf-base (3.8.3-27) ... update-alternatives: using /usr/lib/atlas-base/atlas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode. update-alternatives: using /usr/lib/atlas-base/atlas/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode. Setting up libgmp3c2 (2:4.3.2+dfsg-1) ... Setting up libltdl7 (2.2.6b-2) ... Setting up libglpk0 (4.43-1) ... Setting up libhdf5-serial-1.8.4 (1.8.4-patch1-2) ... Setting up liblzo2-2 (2.03-2) ... Setting up libpython2.6 (2.6.6-8+b1) ... Setting up libshogun8 (0.9.3-4) ... Setting up libshogunui5 (0.9.3-4) ... Setting up python-numpy (1:1.4.1-5) ... Setting up shogun-python (0.9.3-4) ... Processing triggers for python-support ... 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'apt-get', '-y', 'install', 'shogun-python'] 0m7.8s INFO: Running scripts post_install 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_install_exceptions'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_install_exceptions'] 0m7.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpTss_bF'] 0m8.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpTss_bF'] 0m8.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpTss_bF to wheezy 0m8.0s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ wheezy main 0m8.0s INFO: Running scripts pre_distupgrade 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_distupgrade_wheezy'] 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_distupgrade_wheezy'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'apt-get', 'update'] 0m9.3s DUMP: Get:1 http://mirror-ubc.debian.org wheezy Release.gpg [2373 B] Ign http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en Get:2 http://mirror-ubc.debian.org wheezy Release [191 kB] Get:3 http://mirror-ubc.debian.org wheezy/main amd64 Packages [7634 kB] Fetched 7827 kB in 0s (11.9 MB/s) Reading package lists... W: There is no public key available for the following key IDs: 7638D0442B90D010 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'apt-get', 'update'] 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'apt-get', '-yf', 'dist-upgrade'] 0m35.7s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: shogun-python The following NEW packages will be installed: gcc-4.7-base libapt-pkg4.12 libatlas3-base libdb5.1 libgmp10 liblzma5 libmount1 libpam-modules-bin libquadmath0 libsemanage-common libsemanage1 libssl1.0.0 libtinfo5 libustr-1.0-1 multiarch-support python2.7 python2.7-minimal The following packages will be upgraded: adduser apt base-files base-passwd bash bsdutils coreutils dash debconf debconf-i18n debian-archive-keyring debianutils diffutils dpkg e2fslibs e2fsprogs findutils gcc-4.4-base gnupg gpgv grep gzip hostname initscripts insserv libacl1 libatlas3gf-base libattr1 libblkid1 libbz2-1.0 libc-bin libc6 libcomerr2 libexpat1 libgcc1 libgfortran3 libglpk0 liblocale-gettext-perl libltdl7 liblzo2-2 libncurses5 libncursesw5 libpam-modules libpam-runtime libpam0g libpython2.6 libreadline6 libselinux1 libsepol1 libslang2 libsqlite3-0 libss2 libstdc++6 libtext-charwidth-perl libtext-iconv-perl libusb-0.1-4 libuuid1 login lsb-base mawk mime-support mount ncurses-base ncurses-bin passwd perl-base python python-minimal python-numpy python-support python2.6 python2.6-minimal readline-common sed sensible-utils sysv-rc sysvinit sysvinit-utils tar tzdata ucf util-linux xz-utils zlib1g 84 upgraded, 17 newly installed, 1 to remove and 0 not upgraded. Need to get 59.2 MB of archives. After this operation, 17.6 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main sensible-utils all 0.0.7 [8850 B] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main debianutils amd64 4.3.2 [78.9 kB] Get:3 http://mirror-ubc.debian.org/debian/ wheezy/main libc-bin amd64 2.13-38+deb7u10 [1274 kB] Get:4 http://mirror-ubc.debian.org/debian/ wheezy/main libc6 amd64 2.13-38+deb7u10 [4226 kB] Get:5 http://mirror-ubc.debian.org/debian/ wheezy/main gcc-4.7-base amd64 4.7.2-5 [144 kB] Get:6 http://mirror-ubc.debian.org/debian/ wheezy/main multiarch-support amd64 2.13-38+deb7u10 [152 kB] Get:7 http://mirror-ubc.debian.org/debian/ wheezy/main libgcc1 amd64 1:4.7.2-5 [43.1 kB] Get:8 http://mirror-ubc.debian.org/debian/ wheezy/main libsemanage-common all 2.1.6-6 [23.2 kB] Get:9 http://mirror-ubc.debian.org/debian/ wheezy/main libsepol1 amd64 2.1.4-3 [135 kB] Get:10 http://mirror-ubc.debian.org/debian/ wheezy/main libustr-1.0-1 amd64 1.0.4-3 [92.5 kB] Get:11 http://mirror-ubc.debian.org/debian/ wheezy/main libbz2-1.0 amd64 1.0.6-4 [46.5 kB] Get:12 http://mirror-ubc.debian.org/debian/ wheezy/main libselinux1 amd64 2.1.9-5 [90.6 kB] Get:13 http://mirror-ubc.debian.org/debian/ wheezy/main libsemanage1 amd64 2.1.6-6 [102 kB] Get:14 http://mirror-ubc.debian.org/debian/ wheezy/main debconf all 1.5.49 [171 kB] Get:15 http://mirror-ubc.debian.org/debian/ wheezy/main libpam0g amd64 1.1.3-7.1 [128 kB] Get:16 http://mirror-ubc.debian.org/debian/ wheezy/main libdb5.1 amd64 5.1.29-5 [723 kB] Get:17 http://mirror-ubc.debian.org/debian/ wheezy/main libpam-modules-bin amd64 1.1.3-7.1 [113 kB] Get:18 http://mirror-ubc.debian.org/debian/ wheezy/main libpam-modules amd64 1.1.3-7.1 [348 kB] Get:19 http://mirror-ubc.debian.org/debian/ wheezy/main passwd amd64 1:4.1.5.1-1 [1259 kB] Get:20 http://mirror-ubc.debian.org/debian/ wheezy/main libuuid1 amd64 2.20.1-5.3 [57.1 kB] Get:21 http://mirror-ubc.debian.org/debian/ wheezy/main libblkid1 amd64 2.20.1-5.3 [120 kB] Get:22 http://mirror-ubc.debian.org/debian/ wheezy/main libslang2 amd64 2.2.4-15 [551 kB] Get:23 http://mirror-ubc.debian.org/debian/ wheezy/main libtinfo5 amd64 5.9-10 [275 kB] Get:24 http://mirror-ubc.debian.org/debian/ wheezy/main lsb-base all 4.1+Debian8+deb7u1 [26.8 kB] Get:25 http://mirror-ubc.debian.org/debian/ wheezy/main tzdata all 2016d-0+deb7u1 [453 kB] Get:26 http://mirror-ubc.debian.org/debian/ wheezy/main liblzma5 amd64 5.1.1alpha+20120614-2 [202 kB] Get:27 http://mirror-ubc.debian.org/debian/ wheezy/main dpkg amd64 1.16.18 [2665 kB] Get:28 http://mirror-ubc.debian.org/debian/ wheezy/main util-linux amd64 2.20.1-5.3 [659 kB] Get:29 http://mirror-ubc.debian.org/debian/ wheezy/main insserv amd64 1.14.0-5 [64.8 kB] Get:30 http://mirror-ubc.debian.org/debian/ wheezy/main sysvinit-utils amd64 2.88dsf-41+deb7u1 [100 kB] Get:31 http://mirror-ubc.debian.org/debian/ wheezy/main sysv-rc all 2.88dsf-41+deb7u1 [81.8 kB] Get:32 http://mirror-ubc.debian.org/debian/ wheezy/main libmount1 amd64 2.20.1-5.3 [120 kB] Get:33 http://mirror-ubc.debian.org/debian/ wheezy/main mount amd64 2.20.1-5.3 [213 kB] Get:34 http://mirror-ubc.debian.org/debian/ wheezy/main libattr1 amd64 1:2.4.46-8 [19.8 kB] Get:35 http://mirror-ubc.debian.org/debian/ wheezy/main libacl1 amd64 2.2.51-8 [30.1 kB] Get:36 http://mirror-ubc.debian.org/debian/ wheezy/main coreutils amd64 8.13-3.5 [5628 kB] Get:37 http://mirror-ubc.debian.org/debian/ wheezy/main initscripts amd64 2.88dsf-41+deb7u1 [91.8 kB] Get:38 http://mirror-ubc.debian.org/debian/ wheezy/main base-files amd64 7.1wheezy11 [67.1 kB] Get:39 http://mirror-ubc.debian.org/debian/ wheezy/main bash amd64 4.2+dfsg-0.1+deb7u3 [1501 kB] Get:40 http://mirror-ubc.debian.org/debian/ wheezy/main dash amd64 0.5.7-3 [113 kB] Get:41 http://mirror-ubc.debian.org/debian/ wheezy/main diffutils amd64 1:3.2-6 [366 kB] Get:42 http://mirror-ubc.debian.org/debian/ wheezy/main libcomerr2 amd64 1.42.5-1.1+deb7u1 [56.1 kB] Get:43 http://mirror-ubc.debian.org/debian/ wheezy/main e2fslibs amd64 1.42.5-1.1+deb7u1 [197 kB] Get:44 http://mirror-ubc.debian.org/debian/ wheezy/main e2fsprogs amd64 1.42.5-1.1+deb7u1 [979 kB] Get:45 http://mirror-ubc.debian.org/debian/ wheezy/main findutils amd64 4.4.2-4 [694 kB] Get:46 http://mirror-ubc.debian.org/debian/ wheezy/main grep amd64 2.12-2 [454 kB] Get:47 http://mirror-ubc.debian.org/debian/ wheezy/main gzip amd64 1.5-1.1 [119 kB] Get:48 http://mirror-ubc.debian.org/debian/ wheezy/main hostname amd64 3.11 [15.0 kB] Get:49 http://mirror-ubc.debian.org/debian/ wheezy/main login amd64 1:4.1.5.1-1 [983 kB] Get:50 http://mirror-ubc.debian.org/debian/ wheezy/main ncurses-bin amd64 5.9-10 [335 kB] Get:51 http://mirror-ubc.debian.org/debian/ wheezy/main libtext-charwidth-perl amd64 0.04-7+b1 [11.2 kB] Get:52 http://mirror-ubc.debian.org/debian/ wheezy/main libtext-iconv-perl amd64 1.7-5 [17.6 kB] Get:53 http://mirror-ubc.debian.org/debian/ wheezy/main perl-base amd64 5.14.2-21+deb7u3 [1522 kB] Get:54 http://mirror-ubc.debian.org/debian/ wheezy/main liblocale-gettext-perl amd64 1.05-7+b1 [20.4 kB] Get:55 http://mirror-ubc.debian.org/debian/ wheezy/main sed amd64 4.2.1-10 [251 kB] Get:56 http://mirror-ubc.debian.org/debian/ wheezy/main sysvinit amd64 2.88dsf-41+deb7u1 [133 kB] Get:57 http://mirror-ubc.debian.org/debian/ wheezy/main tar amd64 1.26+dfsg-0.1 [985 kB] Get:58 http://mirror-ubc.debian.org/debian/ wheezy/main base-passwd amd64 3.5.26 [46.3 kB] Get:59 http://mirror-ubc.debian.org/debian/ wheezy/main bsdutils amd64 1:2.20.1-5.3 [85.5 kB] Get:60 http://mirror-ubc.debian.org/debian/ wheezy/main ncurses-base all 5.9-10 [198 kB] Get:61 http://mirror-ubc.debian.org/debian/ wheezy/main libstdc++6 amd64 4.7.2-5 [332 kB] Get:62 http://mirror-ubc.debian.org/debian/ wheezy/main zlib1g amd64 1:1.2.7.dfsg-13 [87.4 kB] Get:63 http://mirror-ubc.debian.org/debian/ wheezy/main gpgv amd64 1.4.12-7+deb7u7 [228 kB] Get:64 http://mirror-ubc.debian.org/debian/ wheezy/main debian-archive-keyring all 2014.3~deb7u1 [60.7 kB] Get:65 http://mirror-ubc.debian.org/debian/ wheezy/main readline-common all 6.2+dfsg-0.1 [31.9 kB] Get:66 http://mirror-ubc.debian.org/debian/ wheezy/main libreadline6 amd64 6.2+dfsg-0.1 [166 kB] Get:67 http://mirror-ubc.debian.org/debian/ wheezy/main libusb-0.1-4 amd64 2:0.1.12-20+nmu1 [23.1 kB] Get:68 http://mirror-ubc.debian.org/debian/ wheezy/main gnupg amd64 1.4.12-7+deb7u7 [1956 kB] Get:69 http://mirror-ubc.debian.org/debian/ wheezy/main libapt-pkg4.12 amd64 0.9.7.9+deb7u7 [891 kB] Get:70 http://mirror-ubc.debian.org/debian/ wheezy/main apt amd64 0.9.7.9+deb7u7 [1262 kB] Get:71 http://mirror-ubc.debian.org/debian/ wheezy/main libncurses5 amd64 5.9-10 [113 kB] Get:72 http://mirror-ubc.debian.org/debian/ wheezy/main libss2 amd64 1.42.5-1.1+deb7u1 [61.4 kB] Get:73 http://mirror-ubc.debian.org/debian/ wheezy/main libncursesw5 amd64 5.9-10 [141 kB] Get:74 http://mirror-ubc.debian.org/debian/ wheezy/main libssl1.0.0 amd64 1.0.1e-2+deb7u20 [1263 kB] Get:75 http://mirror-ubc.debian.org/debian/ wheezy/main mawk amd64 1.3.3-17 [90.8 kB] Get:76 http://mirror-ubc.debian.org/debian/ wheezy/main libsqlite3-0 amd64 3.7.13-1+deb7u2 [454 kB] Get:77 http://mirror-ubc.debian.org/debian/ wheezy/main libexpat1 amd64 2.1.0-1+deb7u2 [139 kB] Get:78 http://mirror-ubc.debian.org/debian/ wheezy/main libquadmath0 amd64 4.7.2-5 [125 kB] Get:79 http://mirror-ubc.debian.org/debian/ wheezy/main libgfortran3 amd64 4.7.2-5 [351 kB] Get:80 http://mirror-ubc.debian.org/debian/ wheezy/main libgmp10 amd64 2:5.0.5+dfsg-2 [250 kB] Get:81 http://mirror-ubc.debian.org/debian/ wheezy/main libltdl7 amd64 2.4.2-1.1 [352 kB] Get:82 http://mirror-ubc.debian.org/debian/ wheezy/main liblzo2-2 amd64 2.06-1+deb7u1 [59.0 kB] Get:83 http://mirror-ubc.debian.org/debian/ wheezy/main libpam-runtime all 1.1.3-7.1 [228 kB] Get:84 http://mirror-ubc.debian.org/debian/ wheezy/main xz-utils amd64 5.1.1alpha+20120614-2 [237 kB] Get:85 http://mirror-ubc.debian.org/debian/ wheezy/main adduser all 3.113+nmu3 [264 kB] Get:86 http://mirror-ubc.debian.org/debian/ wheezy/main debconf-i18n all 1.5.49 [237 kB] Get:87 http://mirror-ubc.debian.org/debian/ wheezy/main mime-support all 3.52-1+deb7u1 [35.5 kB] Get:88 http://mirror-ubc.debian.org/debian/ wheezy/main python2.7-minimal amd64 2.7.3-6+deb7u2 [1785 kB] Get:89 http://mirror-ubc.debian.org/debian/ wheezy/main python-numpy amd64 1:1.6.2-1.2 [2632 kB] Get:90 http://mirror-ubc.debian.org/debian/ wheezy/main python all 2.7.3-4+deb7u1 [181 kB] Get:91 http://mirror-ubc.debian.org/debian/ wheezy/main python-support all 1.0.15 [33.6 kB] Get:92 http://mirror-ubc.debian.org/debian/ wheezy/main python-minimal all 2.7.3-4+deb7u1 [42.8 kB] Get:93 http://mirror-ubc.debian.org/debian/ wheezy/main libatlas3gf-base all 3.8.4-9+deb7u1 [34.3 kB] Get:94 http://mirror-ubc.debian.org/debian/ wheezy/main libatlas3-base amd64 3.8.4-9+deb7u1 [6880 kB] Get:95 http://mirror-ubc.debian.org/debian/ wheezy/main python2.7 amd64 2.7.3-6+deb7u2 [2728 kB] Get:96 http://mirror-ubc.debian.org/debian/ wheezy/main libpython2.6 amd64 2.6.8-1.1 [1104 kB] Get:97 http://mirror-ubc.debian.org/debian/ wheezy/main python2.6 amd64 2.6.8-1.1 [2509 kB] Get:98 http://mirror-ubc.debian.org/debian/ wheezy/main python2.6-minimal amd64 2.6.8-1.1 [1547 kB] Get:99 http://mirror-ubc.debian.org/debian/ wheezy/main ucf all 3.0025+nmu3 [70.8 kB] Get:100 http://mirror-ubc.debian.org/debian/ wheezy/main gcc-4.4-base amd64 4.4.7-2 [127 kB] Get:101 http://mirror-ubc.debian.org/debian/ wheezy/main libglpk0 amd64 4.45-1 [446 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.2 MB in 1s (37.4 MB/s) (Reading database ... 7794 files and directories currently installed.) Removing shogun-python ... Processing triggers for python-support ... (Reading database ... 7714 files and directories currently installed.) Preparing to replace sensible-utils 0.0.4 (using .../sensible-utils_0.0.7_all.deb) ... Unpacking replacement sensible-utils ... Setting up sensible-utils (0.0.7) ... (Reading database ... 7726 files and directories currently installed.) Preparing to replace debianutils 3.4 (using .../debianutils_4.3.2_amd64.deb) ... Unpacking replacement debianutils ... Setting up debianutils (4.3.2) ... (Reading database ... 7752 files and directories currently installed.) Preparing to replace libc-bin 2.11.3-4 (using .../libc-bin_2.13-38+deb7u10_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-38+deb7u10) ... Installing new version of config file /etc/bindresvport.blacklist ... (Reading database ... 7769 files and directories currently installed.) Preparing to replace libc6 2.11.3-4 (using .../libc6_2.13-38+deb7u10_amd64.deb) ... Checking for services that may need to be restarted... Checking init scripts... Unpacking replacement libc6 ... Setting up libc6 (2.13-38+deb7u10) ... Checking for services that may need to be restarted... Checking init scripts... Nothing to restart. Selecting previously deselected package gcc-4.7-base. (Reading database ... 7774 files and directories currently installed.) Unpacking gcc-4.7-base (from .../gcc-4.7-base_4.7.2-5_amd64.deb) ... Setting up gcc-4.7-base (4.7.2-5) ... Selecting previously deselected package multiarch-support. (Reading database ... 7781 files and directories currently installed.) Unpacking multiarch-support (from .../multiarch-support_2.13-38+deb7u10_amd64.deb) ... Setting up multiarch-support (2.13-38+deb7u10) ... (Reading database ... 7785 files and directories currently installed.) Preparing to replace libgcc1 1:4.4.5-8 (using .../libgcc1_1%3a4.7.2-5_amd64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.7.2-5) ... 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Preparing to replace base-passwd 3.5.22 (using .../base-passwd_3.5.26_amd64.deb) ... Unpacking replacement base-passwd ... Setting up base-passwd (3.5.26) ... (Reading database ... 8281 files and directories currently installed.) Preparing to replace bsdutils 1:2.17.2-9 (using .../bsdutils_1%3a2.20.1-5.3_amd64.deb) ... Unpacking replacement bsdutils ... Setting up bsdutils (1:2.20.1-5.3) ... (Reading database ... 8281 files and directories currently installed.) Preparing to replace ncurses-base 5.7+20100313-5 (using .../ncurses-base_5.9-10_all.deb) ... Unpacking replacement ncurses-base ... Setting up ncurses-base (5.9-10) ... Installing new version of config file /etc/terminfo/README ... (Reading database ... 8283 files and directories currently installed.) Preparing to replace libstdc++6 4.4.5-8 (using .../libstdc++6_4.7.2-5_amd64.deb) ... Unpacking replacement libstdc++6:amd64 ... Setting up libstdc++6:amd64 (4.7.2-5) ... (Reading database ... 8283 files and directories currently installed.) Preparing to replace zlib1g 1:1.2.3.4.dfsg-3 (using .../zlib1g_1%3a1.2.7.dfsg-13_amd64.deb) ... Unpacking replacement zlib1g:amd64 ... Setting up zlib1g:amd64 (1:1.2.7.dfsg-13) ... (Reading database ... 8283 files and directories currently installed.) Preparing to replace gpgv 1.4.10-4+squeeze4 (using .../gpgv_1.4.12-7+deb7u7_amd64.deb) ... Unpacking replacement gpgv ... Setting up gpgv (1.4.12-7+deb7u7) ... (Reading database ... 8283 files and directories currently installed.) Preparing to replace debian-archive-keyring 2010.08.28+squeeze1 (using .../debian-archive-keyring_2014.3~deb7u1_all.deb) ... Unpacking replacement debian-archive-keyring ... Setting up debian-archive-keyring (2014.3~deb7u1) ... (Reading database ... 8290 files and directories currently installed.) Preparing to replace readline-common 6.1-3 (using .../readline-common_6.2+dfsg-0.1_all.deb) ... Unpacking replacement readline-common ... Setting up readline-common (6.2+dfsg-0.1) ... (Reading database ... 8289 files and directories currently installed.) Preparing to replace libreadline6 6.1-3 (using .../libreadline6_6.2+dfsg-0.1_amd64.deb) ... Unpacking replacement libreadline6:amd64 ... Setting up libreadline6:amd64 (6.2+dfsg-0.1) ... (Reading database ... 8289 files and directories currently installed.) Preparing to replace libusb-0.1-4 2:0.1.12-16 (using .../libusb-0.1-4_2%3a0.1.12-20+nmu1_amd64.deb) ... Unpacking replacement libusb-0.1-4:amd64 ... Setting up libusb-0.1-4:amd64 (2:0.1.12-20+nmu1) ... (Reading database ... 8288 files and directories currently installed.) Preparing to replace gnupg 1.4.10-4+squeeze4 (using .../gnupg_1.4.12-7+deb7u7_amd64.deb) ... Unpacking replacement gnupg ... Setting up gnupg (1.4.12-7+deb7u7) ... Selecting previously unselected package libapt-pkg4.12:amd64. dpkg: considering deconfiguration of apt, which would be broken by installation of libapt-pkg4.12:amd64 ... dpkg: yes, will deconfigure apt (broken by libapt-pkg4.12:amd64) (Reading database ... 8277 files and directories currently installed.) Unpacking libapt-pkg4.12:amd64 (from .../libapt-pkg4.12_0.9.7.9+deb7u7_amd64.deb) ... De-configuring apt ... Setting up libapt-pkg4.12:amd64 (0.9.7.9+deb7u7) ... (Reading database ... 8325 files and directories currently installed.) Preparing to replace apt 0.8.10.3+squeeze1 (using .../apt_0.9.7.9+deb7u7_amd64.deb) ... Unpacking replacement apt ... Setting up apt (0.9.7.9+deb7u7) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt ... gpg: key B98321F9: "Squeeze Stable Release Key " not changed gpg: key 473041FA: "Debian Archive Automatic Signing Key (6.0/squeeze) " not changed gpg: key 65FFB764: "Wheezy Stable Release Key " not changed gpg: key 46925553: "Debian Archive Automatic Signing Key (7.0/wheezy) " not changed gpg: key 518E17E1: "Jessie Stable Release Key " not changed gpg: key 2B90D010: "Debian Archive Automatic Signing Key (8/jessie) " not changed gpg: key C857C906: "Debian Security Archive Automatic Signing Key (8/jessie) " not changed gpg: Total number processed: 7 gpg: unchanged: 7 gpg: checking the trustdb gpg: WARNING: digest algorithm MD5 is deprecated gpg: please see http://www.gnupg.org/faq/weak-digest-algos.html for more information gpg: no ultimately trusted keys found (Reading database ... 8236 files and directories currently installed.) Preparing to replace libncurses5 5.7+20100313-5 (using .../libncurses5_5.9-10_amd64.deb) ... Unpacking replacement libncurses5:amd64 ... Setting up libncurses5:amd64 (5.9-10) ... (Reading database ... 8228 files and directories currently installed.) Preparing to replace libss2 1.41.12-4stable1 (using .../libss2_1.42.5-1.1+deb7u1_amd64.deb) ... Unpacking replacement libss2:amd64 ... Setting up libss2:amd64 (1.42.5-1.1+deb7u1) ... (Reading database ... 8228 files and directories currently installed.) Preparing to replace libncursesw5 5.7+20100313-5 (using .../libncursesw5_5.9-10_amd64.deb) ... Unpacking replacement libncursesw5:amd64 ... Selecting previously unselected package libssl1.0.0:amd64. Unpacking libssl1.0.0:amd64 (from .../libssl1.0.0_1.0.1e-2+deb7u20_amd64.deb) ... Preparing to replace mawk 1.3.3-15 (using .../mawk_1.3.3-17_amd64.deb) ... Unpacking replacement mawk ... Preparing to replace libsqlite3-0 3.7.3-1 (using .../libsqlite3-0_3.7.13-1+deb7u2_amd64.deb) ... Unpacking replacement libsqlite3-0:amd64 ... Preparing to replace libexpat1 2.0.1-7+squeeze1 (using .../libexpat1_2.1.0-1+deb7u2_amd64.deb) ... Unpacking replacement libexpat1:amd64 ... Selecting previously unselected package libquadmath0:amd64. Unpacking libquadmath0:amd64 (from .../libquadmath0_4.7.2-5_amd64.deb) ... Preparing to replace libgfortran3 4.4.5-8 (using .../libgfortran3_4.7.2-5_amd64.deb) ... Unpacking replacement libgfortran3:amd64 ... Selecting previously unselected package libgmp10:amd64. Unpacking libgmp10:amd64 (from .../libgmp10_2%3a5.0.5+dfsg-2_amd64.deb) ... Preparing to replace libltdl7 2.2.6b-2 (using .../libltdl7_2.4.2-1.1_amd64.deb) ... Unpacking replacement libltdl7:amd64 ... Preparing to replace liblzo2-2 2.03-2 (using .../liblzo2-2_2.06-1+deb7u1_amd64.deb) ... Unpacking replacement liblzo2-2:amd64 ... Preparing to replace libpam-runtime 1.1.1-6.1+squeeze1 (using .../libpam-runtime_1.1.3-7.1_all.deb) ... Unpacking replacement libpam-runtime ... Setting up libpam-runtime (1.1.3-7.1) ... (Reading database ... 8256 files and directories currently installed.) Preparing to replace xz-utils 5.0.0-2 (using .../xz-utils_5.1.1alpha+20120614-2_amd64.deb) ... Unpacking replacement xz-utils ... Setting up xz-utils (5.1.1alpha+20120614-2) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode (Reading database ... 8258 files and directories currently installed.) Preparing to replace adduser 3.112+nmu2 (using .../adduser_3.113+nmu3_all.deb) ... Unpacking replacement adduser ... Preparing to replace debconf-i18n 1.5.36.1 (using .../debconf-i18n_1.5.49_all.deb) ... Unpacking replacement debconf-i18n ... Preparing to replace mime-support 3.48-1 (using .../mime-support_3.52-1+deb7u1_all.deb) ... Unpacking replacement mime-support ... Selecting previously unselected package python2.7-minimal. Unpacking python2.7-minimal (from .../python2.7-minimal_2.7.3-6+deb7u2_amd64.deb) ... Preparing to replace python-numpy 1:1.4.1-5 (using .../python-numpy_1%3a1.6.2-1.2_amd64.deb) ... Unpacking replacement python-numpy ... Preparing to replace python 2.6.6-3+squeeze7 (using .../python_2.7.3-4+deb7u1_all.deb) ... Unpacking replacement python ... Preparing to replace python-support 1.0.10 (using .../python-support_1.0.15_all.deb) ... Unpacking replacement python-support ... Preparing to replace python-minimal 2.6.6-3+squeeze7 (using .../python-minimal_2.7.3-4+deb7u1_all.deb) ... Unpacking replacement python-minimal ... Preparing to replace libatlas3gf-base 3.8.3-27 (using .../libatlas3gf-base_3.8.4-9+deb7u1_all.deb) ... Unpacking replacement libatlas3gf-base ... Selecting previously unselected package libatlas3-base. Unpacking libatlas3-base (from .../libatlas3-base_3.8.4-9+deb7u1_amd64.deb) ... update-alternatives: warning: alternative /usr/lib/atlas-base/atlas/libblas.so.3gf (part of link group libblas.so.3gf) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libblas.so.3gf is dangling; it will be updated with best choice update-alternatives: warning: alternative /usr/lib/atlas-base/atlas/liblapack.so.3gf (part of link group liblapack.so.3gf) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/liblapack.so.3gf is dangling; it will be updated with best choice Selecting previously unselected package python2.7. Unpacking python2.7 (from .../python2.7_2.7.3-6+deb7u2_amd64.deb) ... Preparing to replace libpython2.6 2.6.6-8+b1 (using .../libpython2.6_2.6.8-1.1_amd64.deb) ... Unpacking replacement libpython2.6 ... Preparing to replace python2.6 2.6.6-8+b1 (using .../python2.6_2.6.8-1.1_amd64.deb) ... Unpacking replacement python2.6 ... Preparing to replace python2.6-minimal 2.6.6-8+b1 (using .../python2.6-minimal_2.6.8-1.1_amd64.deb) ... Unpacking replacement python2.6-minimal ... Preparing to replace ucf 3.0025+nmu1 (using .../ucf_3.0025+nmu3_all.deb) ... Unpacking replacement ucf ... Preparing to replace gcc-4.4-base 4.4.5-8 (using .../gcc-4.4-base_4.4.7-2_amd64.deb) ... Unpacking replacement gcc-4.4-base:amd64 ... Preparing to replace libglpk0 4.43-1 (using .../libglpk0_4.45-1_amd64.deb) ... Unpacking replacement libglpk0 ... Setting up libtext-charwidth-perl (0.04-7+b1) ... Setting up libtext-iconv-perl (1.7-5) ... Setting up liblocale-gettext-perl (1.05-7+b1) ... Setting up libncursesw5:amd64 (5.9-10) ... Setting up libssl1.0.0:amd64 (1.0.1e-2+deb7u20) ... Setting up mawk (1.3.3-17) ... Setting up libsqlite3-0:amd64 (3.7.13-1+deb7u2) ... Setting up libexpat1:amd64 (2.1.0-1+deb7u2) ... Setting up libquadmath0:amd64 (4.7.2-5) ... Setting up libgfortran3:amd64 (4.7.2-5) ... Setting up libgmp10:amd64 (2:5.0.5+dfsg-2) ... Setting up libltdl7:amd64 (2.4.2-1.1) ... Setting up liblzo2-2:amd64 (2.06-1+deb7u1) ... Setting up adduser (3.113+nmu3) ... Installing new version of config file /etc/deluser.conf ... Setting up debconf-i18n (1.5.49) ... Setting up mime-support (3.52-1+deb7u1) ... Installing new version of config file /etc/mime.types ... Setting up python2.7-minimal (2.7.3-6+deb7u2) ... Setting up python2.7 (2.7.3-6+deb7u2) ... Setting up python-minimal (2.7.3-4+deb7u1) ... Setting up python (2.7.3-4+deb7u1) ... Setting up python-support (1.0.15) ... Setting up libatlas3-base (3.8.4-9+deb7u1) ... update-alternatives: using /usr/lib/atlas-base/atlas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode update-alternatives: using /usr/lib/atlas-base/atlas/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up python-numpy (1:1.6.2-1.2) ... Setting up libatlas3gf-base (3.8.4-9+deb7u1) ... Setting up python2.6-minimal (2.6.8-1.1) ... Setting up python2.6 (2.6.8-1.1) ... Setting up libpython2.6 (2.6.8-1.1) ... Setting up ucf (3.0025+nmu3) ... Setting up gcc-4.4-base:amd64 (4.4.7-2) ... Setting up libglpk0 (4.45-1) ... Processing triggers for python-support ... 0m35.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'apt-get', '-yf', 'dist-upgrade'] 0m35.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m36.6s DUMP: 0c96df6df725ee7ec7aebd2b6a77fb72 - 0m36.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m36.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'apt-cache', 'show', 'shogun-python'] 0m36.6s DUMP: E: No packages found 0m36.6s DEBUG: Command failed (status=100), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'apt-cache', 'show', 'shogun-python'] 0m36.6s INFO: apt-cache does not know about any of the requested packages 0m36.6s INFO: Running scripts post_distupgrade 0m36.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m36.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m36.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_distupgrade_exceptions'] 0m36.6s DUMP: FIXING /usr/share/keyrings/debian-archive-removed-keys.gpg~ `/usr/share/keyrings/debian-archive-removed-keys.gpg~' -> `/usr/share/keyrings/debian-archive-removed-keys.gpg' 0m36.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_distupgrade_exceptions'] 0m36.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m36.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m36.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m36.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m36.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_distupgrade_zz_backports'] 0m36.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_distupgrade_zz_backports'] 0m36.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpTss_bF'] 0m37.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpTss_bF'] 0m37.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpTss_bF'] 0m37.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpTss_bF'] 0m37.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpTss_bF'] 0m37.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpTss_bF'] 0m37.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m37.8s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u3 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.4-base:amd64 gcc-4.4-base 4.4.7-2 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u7 install ok installed gpgv gpgv 1.4.12-7+deb7u7 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libatlas3-base libatlas3-base 3.8.4-9+deb7u1 install ok installed libatlas3gf-base libatlas3gf-base 3.8.4-9+deb7u1 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u10 install ok installed libc6:amd64 libc6 2.13-38+deb7u10 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb4.8 libdb4.8 4.8.30-2 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libexpat1:amd64 libexpat1 2.1.0-1+deb7u2 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed libgfortran3:amd64 libgfortran3 4.7.2-5 install ok installed libglpk0 libglpk0 4.45-1 install ok installed libgmp10:amd64 libgmp10 2:5.0.5+dfsg-2 install ok installed libgmp3c2 libgmp3c2 2:4.3.2+dfsg-1 install ok installed libhdf5-serial-1.8.4 libhdf5-serial-1.8.4 1.8.4-patch1-2 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed libltdl7:amd64 libltdl7 2.4.2-1.1 install ok installed liblzma2 liblzma2 5.0.0-2 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed liblzo2-2:amd64 liblzo2-2 2.06-1+deb7u1 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libncursesw5:amd64 libncursesw5 5.9-10 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libpython2.6 libpython2.6 2.6.8-1.1 install ok installed libquadmath0:amd64 libquadmath0 4.7.2-5 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libshogun8 libshogun8 0.9.3-4 install ok installed libshogunui5 libshogunui5 0.9.3-4 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.7.13-1+deb7u2 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libssl0.9.8 libssl0.9.8 0.9.8o-4squeeze14 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1e-2+deb7u20 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed login login 1:4.1.5.1-1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mime-support mime-support 3.52-1+deb7u1 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u10 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1 install ok installed perl-base perl-base 5.14.2-21+deb7u3 install ok installed python python 2.7.3-4+deb7u1 install ok installed python-minimal python-minimal 2.7.3-4+deb7u1 install ok installed python-numpy python-numpy 1:1.6.2-1.2 install ok installed python-support python-support 1.0.15 install ok installed python2.6 python2.6 2.6.8-1.1 install ok installed python2.6-minimal python2.6-minimal 2.6.8-1.1 install ok installed python2.7 python2.7 2.7.3-6+deb7u2 install ok installed python2.7-minimal python2.7-minimal 2.7.3-6+deb7u2 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1 install ok installed tzdata tzdata 2016d-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m37.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m38.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpTss_bF', '-ac', '--ignore-obsolete'] 0m39.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpTss_bF', '-ac', '--ignore-obsolete'] 0m39.7s INFO: Running scripts pre_remove 0m39.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m39.8s DUMP: dpkg-query: no packages found matching shogun-python 0m39.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m39.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m40.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m40.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m40.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m40.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m40.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m40.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_remove_exceptions'] 0m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/pre_remove_exceptions'] 0m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'apt-get', 'remove', 'libhdf5-serial-1.8.4', 'gcc-4.4-base:amd64', 'python-support', 'libgfortran3:amd64', 'libatlas3-base', 'libgmp10:amd64', 'libpython2.6', 'libssl1.0.0:amd64', 'libgmp3c2', 'libquadmath0:amd64', 'libshogun8', 'libltdl7:amd64', 'libssl0.9.8', 'libsqlite3-0:amd64', 'python', 'python2.7', 'libexpat1:amd64', 'python-numpy', 'python2.6', 'mime-support', 'libatlas3gf-base', 'python-minimal', 'python2.6-minimal', 'liblzo2-2:amd64', 'libshogunui5', 'libncursesw5:amd64', 'python2.7-minimal', 'libglpk0', 'libdb4.8'] 0m40.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: gcc-4.4-base libatlas3-base libatlas3gf-base libdb4.8 libexpat1 libgfortran3 libglpk0 libgmp10 libgmp3c2 libhdf5-serial-1.8.4 libltdl7 liblzo2-2 libncursesw5 libpython2.6 libquadmath0 libshogun8 libshogunui5 libsqlite3-0 libssl0.9.8 libssl1.0.0 mime-support python python-minimal python-numpy python-support python2.6 python2.6-minimal python2.7 python2.7-minimal 0 upgraded, 0 newly installed, 29 to remove and 0 not upgraded. After this operation, 82.8 MB disk space will be freed. (Reading database ... 9030 files and directories currently installed.) Removing gcc-4.4-base:amd64 ... Removing python-numpy ... Removing libshogunui5 ... Removing libshogun8 ... Removing libatlas3gf-base ... Removing libatlas3-base ... Removing libdb4.8 ... Removing python-support ... Removing python ... Removing python2.7 ... Removing libpython2.6 ... Removing python2.6 ... Removing libexpat1:amd64 ... Removing libhdf5-serial-1.8.4 ... Removing libgfortran3:amd64 ... Removing libglpk0 ... Removing libgmp10:amd64 ... Removing libgmp3c2 ... Removing libltdl7:amd64 ... Removing liblzo2-2:amd64 ... Removing libncursesw5:amd64 ... Removing libquadmath0:amd64 ... Removing libsqlite3-0:amd64 ... Removing libssl0.9.8 ... Removing python-minimal ... Removing python2.7-minimal ... Removing python2.6-minimal ... Removing libssl1.0.0:amd64 ... Removing mime-support ... 0m40.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'apt-get', 'remove', 'libhdf5-serial-1.8.4', 'gcc-4.4-base:amd64', 'python-support', 'libgfortran3:amd64', 'libatlas3-base', 'libgmp10:amd64', 'libpython2.6', 'libssl1.0.0:amd64', 'libgmp3c2', 'libquadmath0:amd64', 'libshogun8', 'libltdl7:amd64', 'libssl0.9.8', 'libsqlite3-0:amd64', 'python', 'python2.7', 'libexpat1:amd64', 'python-numpy', 'python2.6', 'mime-support', 'libatlas3gf-base', 'python-minimal', 'python2.6-minimal', 'liblzo2-2:amd64', 'libshogunui5', 'libncursesw5:amd64', 'python2.7-minimal', 'libglpk0', 'libdb4.8'] 0m40.9s INFO: Running scripts post_remove 0m40.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_remove_exceptions'] 0m40.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_remove_exceptions'] 0m40.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'dpkg', '--purge', 'libhdf5-serial-1.8.4', 'gcc-4.4-base:amd64', 'python-support', 'libgfortran3:amd64', 'libatlas3-base', 'libgmp10:amd64', 'libpython2.6', 'libssl1.0.0:amd64', 'libgmp3c2', 'libquadmath0:amd64', 'libshogun8', 'libltdl7:amd64', 'libssl0.9.8', 'libsqlite3-0:amd64', 'python', 'python2.7', 'libexpat1:amd64', 'python-numpy', 'python2.6', 'mime-support', 'libatlas3gf-base', 'python-minimal', 'python2.6-minimal', 'liblzo2-2:amd64', 'libshogunui5', 'libncursesw5:amd64', 'python2.7-minimal', 'libglpk0', 'libdb4.8'] 0m41.1s DUMP: (Reading database ... 6787 files and directories currently installed.) Removing libhdf5-serial-1.8.4 ... Purging configuration files for libhdf5-serial-1.8.4 ... dpkg: warning: ignoring request to remove gcc-4.4-base which isn't installed Removing python-support ... Purging configuration files for python-support ... Removing libgfortran3:amd64 ... Purging configuration files for libgfortran3:amd64 ... Removing libatlas3-base ... Purging configuration files for libatlas3-base ... Removing libgmp10:amd64 ... Purging configuration files for libgmp10:amd64 ... Removing libpython2.6 ... Purging configuration files for libpython2.6 ... Removing libssl1.0.0:amd64 ... Purging configuration files for libssl1.0.0:amd64 ... Removing libgmp3c2 ... Purging configuration files for libgmp3c2 ... Removing libquadmath0:amd64 ... Purging configuration files for libquadmath0:amd64 ... Removing libshogun8 ... Purging configuration files for libshogun8 ... Removing libltdl7:amd64 ... Purging configuration files for libltdl7:amd64 ... Removing libssl0.9.8 ... Purging configuration files for libssl0.9.8 ... Removing libsqlite3-0:amd64 ... Purging configuration files for libsqlite3-0:amd64 ... Removing python ... Purging configuration files for python ... Removing python2.7 ... Purging configuration files for python2.7 ... Removing libexpat1:amd64 ... Purging configuration files for libexpat1:amd64 ... dpkg: warning: ignoring request to remove python-numpy which isn't installed Removing python2.6 ... Purging configuration files for python2.6 ... Removing mime-support ... Purging configuration files for mime-support ... dpkg: warning: ignoring request to remove libatlas3gf-base which isn't installed dpkg: warning: ignoring request to remove python-minimal which isn't installed Removing python2.6-minimal ... Purging configuration files for python2.6-minimal ... Removing liblzo2-2:amd64 ... Purging configuration files for liblzo2-2:amd64 ... Removing libshogunui5 ... Purging configuration files for libshogunui5 ... Removing libncursesw5:amd64 ... Purging configuration files for libncursesw5:amd64 ... Removing python2.7-minimal ... Purging configuration files for python2.7-minimal ... Removing libglpk0 ... Purging configuration files for libglpk0 ... dpkg: warning: ignoring request to remove libdb4.8 which isn't installed 0m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'dpkg', '--purge', 'libhdf5-serial-1.8.4', 'gcc-4.4-base:amd64', 'python-support', 'libgfortran3:amd64', 'libatlas3-base', 'libgmp10:amd64', 'libpython2.6', 'libssl1.0.0:amd64', 'libgmp3c2', 'libquadmath0:amd64', 'libshogun8', 'libltdl7:amd64', 'libssl0.9.8', 'libsqlite3-0:amd64', 'python', 'python2.7', 'libexpat1:amd64', 'python-numpy', 'python2.6', 'mime-support', 'libatlas3gf-base', 'python-minimal', 'python2.6-minimal', 'liblzo2-2:amd64', 'libshogunui5', 'libncursesw5:amd64', 'python2.7-minimal', 'libglpk0', 'libdb4.8'] 0m41.1s INFO: Running scripts post_purge 0m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_purge_exceptions'] 0m41.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_purge_exceptions'] 0m41.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'dpkg', '--purge', '--pending'] 0m41.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'dpkg', '--purge', '--pending'] 0m41.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'dpkg', '--remove', '--pending'] 0m41.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'dpkg', '--remove', '--pending'] 0m41.2s INFO: Running scripts post_test 0m41.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_test_exceptions'] 0m41.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'tmp/scripts/post_test_exceptions'] 0m41.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpTss_bF'] 0m41.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpTss_bF'] 0m41.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'dpkg-divert', '--list'] 0m41.4s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m41.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'dpkg-divert', '--list'] 0m41.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'apt-get', 'clean'] 0m41.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpTss_bF', 'apt-get', 'clean'] 0m41.4s DEBUG: Recording chroot state 0m42.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpTss_bF/dev/shm'] 0m42.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpTss_bF/dev/shm'] 0m42.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpTss_bF/dev/console'] 0m42.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpTss_bF/dev/console'] 0m42.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpTss_bF/dev/ptmx'] 0m42.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpTss_bF/dev/ptmx'] 0m42.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpTss_bF/dev/pts'] 0m42.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpTss_bF/dev/pts'] 0m42.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpTss_bF/proc'] 0m42.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpTss_bF/proc'] 0m42.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpTss_bF'] 0m42.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpTss_bF'] 0m42.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpTss_bF 0m42.6s INFO: PASS: Upgrading between Debian distributions. 0m42.6s INFO: PASS: All tests. 0m42.6s INFO: piuparts run ends. ret=0 End: 2017-12-13 14:40:26 UTC