Start: 2026-10-22 22:07:48 GMT [stable] Package: qcumber Version: 2.3.0-2 Installed-Size: 236 Maintainer: Debian Med Packaging Team Architecture: all Replaces: qc-pipeline Provides: qc-pipeline Depends: python3:any, debconf (>= 0.5) | debconf-2.0, python3-jinja2, python3-matplotlib, python3-biopython, libjs-angularjs, libjs-bootstrap, libjs-d3, libjs-jquery, r-base-core, r-bioc-savr, r-cran-ggplot2, r-cran-quantreg, snakemake Conflicts: qc-pipeline Description: quality control of genomic sequences Homepage: https://gitlab.com/RKIBioinformaticsPipelines/QCumber Description-md5: 380ba80499911de0a248a18cb1009872 Section: science Priority: optional Filename: pool/main/q/qcumber/qcumber_2.3.0-2_all.deb Size: 50488 MD5sum: e8e75d1efdd4265bdbe9e121b7109314 SHA256: 033afeb7358c5e35109c648bbc275842755dc14c328f84007af5a389c06501cb [testing] [sid] Package: qcumber Version: 2.3.0-4 Installed-Size: 239 Maintainer: Debian Med Packaging Team Architecture: all Replaces: qc-pipeline Provides: qc-pipeline Depends: libjs-angularjs, libjs-bootstrap, libjs-d3, libjs-jquery, python3-biopython, python3-jinja2, python3-matplotlib, r-base-core, r-bioc-savr, r-cran-ggplot2, r-cran-quantreg, snakemake, debconf (>= 0.5) | debconf-2.0, python3:any Recommends: dwgsim, kraken Conflicts: qc-pipeline Description: quality control of genomic sequences Homepage: https://gitlab.com/RKIBioinformaticsPipelines/QCumber Commands: qcumber Description-md5: 380ba80499911de0a248a18cb1009872 Section: science Priority: optional Filename: pool/main/q/qcumber/qcumber_2.3.0-4_all.deb Size: 51644 MD5sum: 10516bff03b206a24d8b0770e479c18d SHA256: 7fa44c299a8c252a776fa27dd6be2494d052810d7317a383e96331d5f00af92e Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat --apt qcumber=2.3.0-4 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202608291513~1.6.0-23-g1172a6e5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat --apt qcumber=2.3.0-4 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.12.113+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.113-1 (2026-10-15) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpr5jbibwc 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpr5jbibwc 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m1.9s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc/proc'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc/proc'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc/dev/pts'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc/dev/pts'] 0m1.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc/dev/ptmx'] 0m1.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc/dev/ptmx'] 0m1.9s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/16', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc/dev/console'] 0m1.9s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/16', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc/dev/console'] 0m1.9s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc/dev/shm'] 0m1.9s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc/dev/shm'] 0m1.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m2.0s DEBUG: Created policy-rc.d and chmodded it. 0m2.0s DEBUG: Created resolv.conf. 0m2.0s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpr5jbibwc/tmp/scripts/ 0m2.0s INFO: Running scripts post_chroot_unpack 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-get', 'update'] 0m3.3s DUMP: Hit:1 http://deb.debian.org/debian trixie InRelease Reading package lists... 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-get', 'update'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-get', '-yf', 'dist-upgrade'] 0m4.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-get', '-yf', 'dist-upgrade'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.5s DUMP: 07cefd96e238a501209b5d81fcdf114c - 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.5s INFO: Running scripts post_setup 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_setup_dummy_users'] 0m5.1s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_setup_dummy_users'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_setup_forbid_home'] 0m5.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_setup_forbid_home'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_setup_minimize'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_setup_minimize'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_setup_zz_backports'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_setup_zz_backports'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.1s DUMP: install ok installed apt apt 3.0.3 install ok installed base-files base-files 13.8+deb13u7 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2+b10 install ok installed bsdutils bsdutils 1:2.41.5-0+deb13u1 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.22 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1+deb13u1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69~deb13u1 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.3 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2+deb13u1 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+deb13u1 install ok installed libblkid1:amd64 libblkid1 2.41.5-0+deb13u1 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12+deb13u4 install ok installed libc6:amd64 libc6 2.41-12+deb13u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+deb13u1+b3 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.5-0+deb13u1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1+deb13u1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.5-0+deb13u1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1~deb13u2 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.5-0+deb13u1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-7+deb13u2 install ok installed libssl3t64:amd64 libssl3t64 3.5.7-1~deb13u2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.13-1~deb13u1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.13-1~deb13u1 install ok installed libuuid1:amd64 libuuid1 2.41.5-0+deb13u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.41.5-0+deb13u1 install ok installed login.defs login.defs 1:4.17.4-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41.5-0+deb13u1 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.7-1~deb13u2 install ok installed passwd passwd 1:4.17.4-2 install ok installed perl-base perl-base 5.40.1-6+deb13u1 install ok installed sed sed 4.9-2+deb13u1 install ok installed sqv sqv 1.3.0-3+b2 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2026c-0+deb13u1 install ok installed util-linux util-linux 2.41.5-0+deb13u1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.1s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat 0m5.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc'] 0m5.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc'] 0m5.5s INFO: Running scripts is_testable 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/is_testable_uninstallable'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/is_testable_uninstallable'] 0m5.5s INFO: Running scripts pre_test 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_test_exceptions'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_test_exceptions'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_test_root_password'] 0m5.5s DUMP: New password: Retype new password: passwd: password updated successfully 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_test_root_password'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-cache', 'show', '--no-all-versions', 'qcumber'] 0m5.8s DUMP: Package: qcumber Version: 2.3.0-2 Installed-Size: 236 Maintainer: Debian Med Packaging Team Architecture: all Replaces: qc-pipeline Provides: qc-pipeline Depends: python3:any, debconf (>= 0.5) | debconf-2.0, python3-jinja2, python3-matplotlib, python3-biopython, libjs-angularjs, libjs-bootstrap, libjs-d3, libjs-jquery, r-base-core, r-bioc-savr, r-cran-ggplot2, r-cran-quantreg, snakemake Conflicts: qc-pipeline Description-en: quality control of genomic sequences QCPipeline is a tool for quality control. The workflow is as follows: . 1. Quality control with FastQC 2. Trim Reads with Trimmomatic 3. Quality control of trimmed reads with FastQC 4. Map reads against reference using bowtie2 5. Classify reads with Kraken Description-md5: 380ba80499911de0a248a18cb1009872 Homepage: https://gitlab.com/RKIBioinformaticsPipelines/QCumber Section: science Priority: optional Filename: pool/main/q/qcumber/qcumber_2.3.0-2_all.deb Size: 50488 MD5sum: e8e75d1efdd4265bdbe9e121b7109314 SHA256: 033afeb7358c5e35109c648bbc275842755dc14c328f84007af5a389c06501cb 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-cache', 'show', '--no-all-versions', 'qcumber'] 0m5.8s INFO: apt-cache knows about the following packages: qcumber 0m5.8s INFO: Running scripts pre_install 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_install_database-server'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_install_database-server'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_install_exceptions'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_install_exceptions'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_install_extras'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_install_extras'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-cache', 'policy'] 0m5.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release v=13.7,o=Debian,a=stable,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-cache', 'policy'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-cache', 'policy', 'qcumber'] 0m5.9s DUMP: qcumber: Installed: (none) Candidate: 2.3.0-2 Version table: 2.3.0-2 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-cache', 'policy', 'qcumber'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-get', '-y', 'install', 'qcumber'] 1m37.5s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: blt ca-certificates coinor-cbc coinor-libcbc3.1 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-glyphicons-halflings fonts-lyx fonts-urw-base35 git git-man libatomic1 libblas3 libbrotli1 libcairo2 libcom-err2 libcurl3t64-gnutls libcurl4t64 libdatrie1 libdeflate0 liberror-perl libexpat1 libffi8 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcrypt20 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libgnutls30t64 libgomp1 libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu76 libidn2-0 libimagequant0 libjbig0 libjpeg62-turbo libjs-angularjs libjs-bootstrap libjs-d3 libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap2 liblerc4 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libopenjp2-7 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libperl5.40 libpixman-1-0 libpng16-16t64 libproc2-0 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libssh2-1t64 libtasn1-6 libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libunistring5 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 libxt6t64 libyaml-0-2 libzopfli1 littler media-types netbase openssl perl perl-modules-5.40 procps python-matplotlib-data python3 python3-attr python3-autocommand python3-biopython python3-brotli python3-cairo python3-certifi python3-chardet python3-charset-normalizer python3-configargparse python3-connection-pool python3-contourpy python3-cycler python3-dateutil python3-datrie python3-decorator python3-docutils python3-dpath python3-fastjsonschema python3-fonttools python3-freetype python3-fs python3-git python3-gitdb python3-humanfriendly python3-idna python3-inflect python3-jaraco.context python3-jaraco.functools python3-jinja2 python3-jsonschema python3-jsonschema-specifications python3-jupyter-core python3-kiwisolver python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-mpmath python3-nbformat python3-numpy python3-numpy-dev python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-plac python3-platformdirs python3-psutil python3-pulp python3-py python3-pyparsing python3-ratelimiter python3-referencing python3-reportlab python3-requests python3-retry python3-rlpycairo python3-roman python3-rpds-py python3-scipy python3-smart-open python3-smmap python3-stopit python3-sympy python3-tabulate python3-throttler python3-tk python3-toposort python3-traitlets python3-typeguard python3-typing-extensions python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-wrapt python3-yaml python3-yte python3-zopfli python3.13 python3.13-minimal python3.13-tk r-base-core r-bioc-biocgenerics r-bioc-savr r-cran-caret r-cran-class r-cran-cli r-cran-clock r-cran-codetools r-cran-colorspace r-cran-conquer r-cran-cpp11 r-cran-data.table r-cran-diagram r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-fansi r-cran-farver r-cran-foreach r-cran-future r-cran-future.apply r-cran-generics r-cran-ggplot2 r-cran-globals r-cran-glue r-cran-gower r-cran-gridextra r-cran-gtable r-cran-hardhat r-cran-ipred r-cran-isoband r-cran-iterators r-cran-kernsmooth r-cran-labeling r-cran-lattice r-cran-lava r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lubridate r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixmodels r-cran-matrixstats r-cran-mgcv r-cran-modelmetrics r-cran-munsell r-cran-nlme r-cran-nnet r-cran-numderiv r-cran-parallelly r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-proc r-cran-prodlim r-cran-progressr r-cran-proxy r-cran-purrr r-cran-quantreg r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-recipes r-cran-reshape2 r-cran-rlang r-cran-rpart r-cran-scales r-cran-shape r-cran-sparsem r-cran-sparsevctrs r-cran-squarem r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-timechange r-cran-timedate r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xml readline-common sensible-utils sgml-base snakemake tk8.6-blt2.5 ucf unicode-data unzip w3c-sgml-lib x11-common xdg-utils xfonts-encodings xfonts-utils xml-core zip Suggested packages: blt-demo fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-base git-doc git-email git-gui gitk gitweb git-cvs git-mediawiki git-svn rng-tools gdbm-l10n low-memory-monitor gnutls-bin krb5-doc krb5-user libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-venv python-attr-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 python3-igraph raxml samtools t-coffee wise python-charset-normalizer-doc python-cycler-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-fastjsonschema-doc python-git-doc python-jinja2-doc python-jsonschema-doc python-jupyter-core-doc python3-pip python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 gir1.2-gtk-4.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc gfortran python-numpy-doc python3-dev python3-pytest python-pil-doc python3-setuptools subversion python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python3-azure python3-azure-storage texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python-traitlets-doc python3.13-venv python3.13-doc binutils binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-bioc-biobase r-bioc-s4vectors r-bioc-iranges r-bioc-s4arrays r-bioc-sparsearray r-bioc-delayedarray r-bioc-hdf5array r-bioc-genomicranges r-bioc-pwalign r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-runit r-cran-cairo r-cran-testthat r-cran-covr r-cran-knitr r-cran-magick r-cran-rmarkdown r-cran-sf r-cran-getopt r-cran-inline readline-doc sgml-base-doc slurm-client snakemake-doc debhelper Recommended packages: patch less ssh-client libglib2.0-data shared-mime-info xdg-user-dirs libgpg-error-l10n javascript-common krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules psmisc linux-sysctl-defaults python-biopython-doc ncbi-blast+ python3-pygments python3-babel python3-fqdn python3-isoduration python3-json-pointer python3-rfc3339-validator python3-rfc3986-validator python3-rfc3987 python3-uritemplate python3-webcolors python3-bs4 python3-cssselect python3-html5lib python3-olefile fonts-dejavu-extra g++ | c++-compiler python3-pooch python3-boto3 python3-paramiko python3-zstandard isympy-common r-recommended r-base-dev r-doc-html r-cran-bradleyterry2 r-cran-covr r-cran-earth r-cran-ellipse r-cran-fastica r-cran-gam r-cran-kernlab r-cran-knitr r-cran-mda r-cran-mlbench r-cran-mlmetrics r-cran-party r-cran-pls r-cran-randomforest r-cran-rann r-cran-rmarkdown r-cran-testthat r-cran-themis r-cran-callr r-cran-crayon r-cran-htmltools r-cran-htmlwidgets r-cran-processx r-cran-ps r-cran-rprojroot r-cran-rstudioapi r-cran-whoami r-cran-slider r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs r-cran-png r-cran-jpeg r-cran-viridis r-cran-bench r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr r-cran-mockery r-cran-progress r-cran-bit64 r-cran-bit r-cran-r.utils r-cran-xts r-cran-zoo r-cran-yaml r-cran-markdown r-cran-broom r-cran-dbi r-cran-dbplyr r-cran-microbenchmark r-cran-rmysql r-cran-rpostgresql r-cran-rsqlite r-cran-unitizer r-cran-rhpcblasctl r-cran-r.rsp r-cran-pkgload r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp r-cran-profvis r-cran-ragg r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-xml2 r-cran-waldo r-cran-tinytest r-cran-devtools r-cran-modeldata r-cran-roxygen2 r-cran-usethis r-cran-th.data r-cran-fields r-cran-geepack r-bioc-graph r-cran-igraph r-cran-lavasearch2 r-cran-lme4 r-cran-mets r-cran-optimx r-cran-polycor r-cran-rgl r-cran-visnetwork r-cran-lintr r-cran-tidyverse r-cran-base64enc r-cran-r.devices r-cran-commonmark r-cran-diagrammer r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-units r-cran-abind r-cran-doparallel r-cran-itertools r-cran-logcondens r-cran-pbmcapply r-cran-furrr r-cran-cba r-cran-httr r-cran-ddalpha r-cran-dials r-cran-rcpproll r-cran-rsample r-cran-rspectra r-cran-splines2 r-cran-rcppml r-cran-dimred r-cran-fs r-cran-dichromat r-cran-hms r-cran-setrng r-cran-blob r-cran-evaluate r-cran-here r-cran-pkgbuild r-cran-readr r-cran-pkgdown r-cran-zeallot cwltool imagemagick python3-tz python3-yappi python3-azure-storage python3-botocore python3-dropbox python3-flask python3-ftputil python3-irodsclient python3-kubernetes libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: blt ca-certificates coinor-cbc coinor-libcbc3.1 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-glyphicons-halflings fonts-lyx fonts-urw-base35 git git-man libatomic1 libblas3 libbrotli1 libcairo2 libcom-err2 libcurl3t64-gnutls libcurl4t64 libdatrie1 libdeflate0 liberror-perl libexpat1 libffi8 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcrypt20 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libgnutls30t64 libgomp1 libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu76 libidn2-0 libimagequant0 libjbig0 libjpeg62-turbo libjs-angularjs libjs-bootstrap libjs-d3 libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap2 liblerc4 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libopenjp2-7 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libperl5.40 libpixman-1-0 libpng16-16t64 libproc2-0 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libssh2-1t64 libtasn1-6 libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libunistring5 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 libxt6t64 libyaml-0-2 libzopfli1 littler media-types netbase openssl perl perl-modules-5.40 procps python-matplotlib-data python3 python3-attr python3-autocommand python3-biopython python3-brotli python3-cairo python3-certifi python3-chardet python3-charset-normalizer python3-configargparse python3-connection-pool python3-contourpy python3-cycler python3-dateutil python3-datrie python3-decorator python3-docutils python3-dpath python3-fastjsonschema python3-fonttools python3-freetype python3-fs python3-git python3-gitdb python3-humanfriendly python3-idna python3-inflect python3-jaraco.context python3-jaraco.functools python3-jinja2 python3-jsonschema python3-jsonschema-specifications python3-jupyter-core python3-kiwisolver python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-mpmath python3-nbformat python3-numpy python3-numpy-dev python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-plac python3-platformdirs python3-psutil python3-pulp python3-py python3-pyparsing python3-ratelimiter python3-referencing python3-reportlab python3-requests python3-retry python3-rlpycairo python3-roman python3-rpds-py python3-scipy python3-smart-open python3-smmap python3-stopit python3-sympy python3-tabulate python3-throttler python3-tk python3-toposort python3-traitlets python3-typeguard python3-typing-extensions python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-wrapt python3-yaml python3-yte python3-zopfli python3.13 python3.13-minimal python3.13-tk qcumber r-base-core r-bioc-biocgenerics r-bioc-savr r-cran-caret r-cran-class r-cran-cli r-cran-clock r-cran-codetools r-cran-colorspace r-cran-conquer r-cran-cpp11 r-cran-data.table r-cran-diagram r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-fansi r-cran-farver r-cran-foreach r-cran-future r-cran-future.apply r-cran-generics r-cran-ggplot2 r-cran-globals r-cran-glue r-cran-gower r-cran-gridextra r-cran-gtable r-cran-hardhat r-cran-ipred r-cran-isoband r-cran-iterators r-cran-kernsmooth r-cran-labeling r-cran-lattice r-cran-lava r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lubridate r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixmodels r-cran-matrixstats r-cran-mgcv r-cran-modelmetrics r-cran-munsell r-cran-nlme r-cran-nnet r-cran-numderiv r-cran-parallelly r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-proc r-cran-prodlim r-cran-progressr r-cran-proxy r-cran-purrr r-cran-quantreg r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-recipes r-cran-reshape2 r-cran-rlang r-cran-rpart r-cran-scales r-cran-shape r-cran-sparsem r-cran-sparsevctrs r-cran-squarem r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-timechange r-cran-timedate r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xml readline-common sensible-utils sgml-base snakemake tk8.6-blt2.5 ucf unicode-data unzip w3c-sgml-lib x11-common xdg-utils xfonts-encodings xfonts-utils xml-core zip 0 upgraded, 320 newly installed, 0 to remove and 0 not upgraded. Need to get 260 MB of archives. After this operation, 765 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.8.3-1~deb13u1 [123 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.5-2+deb13u5 [863 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.5-2+deb13u5 [2225 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 media-types all 13.0.0 [29.3 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.5 [12.4 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.5-2+deb13u5 [1959 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.5-2+deb13u5 [757 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1 [139 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.1-6 [160 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.1-6 [2447 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:2.2.4+ds-1 [5096 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get:21 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get:22 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get:23 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.5.7-1~deb13u2 [1507 kB] Get:24 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20250419 [162 kB] Get:25 http://deb.debian.org/debian trixie/main amd64 perl-modules-5.40 all 5.40.1-6+deb13u1 [3014 kB] Get:26 http://deb.debian.org/debian trixie/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB] Get:27 http://deb.debian.org/debian trixie/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB] Get:28 http://deb.debian.org/debian trixie/main amd64 libperl5.40 amd64 5.40.1-6+deb13u1 [4326 kB] Get:29 http://deb.debian.org/debian trixie/main amd64 perl amd64 5.40.1-6+deb13u1 [268 kB] Get:30 http://deb.debian.org/debian trixie/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get:31 http://deb.debian.org/debian trixie/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:32 http://deb.debian.org/debian trixie/main amd64 ucf all 3.0052 [43.3 kB] Get:33 http://deb.debian.org/debian trixie/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB] Get:34 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:35 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.48-1+deb13u5 [283 kB] Get:36 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1+deb13u1 [452 kB] Get:37 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:38 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:39 http://deb.debian.org/debian trixie/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get:40 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+24+deb13u1 [217 kB] Get:41 http://deb.debian.org/debian trixie/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:42 http://deb.debian.org/debian trixie/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get:43 http://deb.debian.org/debian trixie/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get:44 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB] Get:45 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB] Get:46 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:47 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:48 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:49 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:50 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get:51 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get:52 http://deb.debian.org/debian trixie/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get:53 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:54 http://deb.debian.org/debian trixie/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get:55 http://deb.debian.org/debian trixie/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB] Get:56 http://deb.debian.org/debian trixie/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [591 kB] Get:57 http://deb.debian.org/debian trixie/main amd64 blt amd64 2.5.3+dfsg-8 [5984 B] Get:58 http://deb.debian.org/debian trixie/main amd64 coinor-libcoinutils3v5 amd64 2.11.11+ds-5 [460 kB] Get:59 http://deb.debian.org/debian trixie/main amd64 coinor-libosi1v5 amd64 0.108.10+ds-2 [293 kB] Get:60 http://deb.debian.org/debian trixie/main amd64 coinor-libclp1 amd64 1.17.10+ds-1 [883 kB] Get:61 http://deb.debian.org/debian trixie/main amd64 coinor-libcgl1 amd64 0.60.9+ds-1 [426 kB] Get:62 http://deb.debian.org/debian trixie/main amd64 coinor-libcbc3.1 amd64 2.10.12+ds-1 [714 kB] Get:63 http://deb.debian.org/debian trixie/main amd64 coinor-cbc amd64 2.10.12+ds-1 [16.2 kB] Get:64 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get:65 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get:66 http://deb.debian.org/debian trixie/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get:67 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.15.0-2.3 [463 kB] Get:68 http://deb.debian.org/debian trixie/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [163 kB] Get:69 http://deb.debian.org/debian trixie/main amd64 fonts-lyx all 2.4.3-1 [190 kB] Get:70 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:71 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get:72 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:73 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2+deb13u1 [50.1 kB] Get:74 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-3+deb13u4 [1469 kB] Get:75 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5+deb13u1 [33.1 kB] Get:76 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-3+b12 [25.0 kB] Get:77 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5+deb13u1 [81.2 kB] Get:78 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get:79 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5+deb13u1 [326 kB] Get:80 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5+deb13u1 [138 kB] Get:81 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get:82 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get:83 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get:84 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1.1+deb13u1 [76.2 kB] Get:85 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get:86 http://deb.debian.org/debian trixie/main amd64 libngtcp2-16 amd64 1.11.0-1+deb13u1 [132 kB] Get:87 http://deb.debian.org/debian trixie/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1+deb13u1 [29.5 kB] Get:88 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:89 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:90 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1+deb13u2 [245 kB] Get:91 http://deb.debian.org/debian trixie/main amd64 libcurl3t64-gnutls amd64 8.14.1-2+deb13u5 [384 kB] Get:92 http://deb.debian.org/debian trixie/main amd64 liberror-perl all 0.17030-1 [26.9 kB] Get:93 http://deb.debian.org/debian trixie/main amd64 git-man all 1:2.47.3-0+deb13u1 [2205 kB] Get:94 http://deb.debian.org/debian trixie/main amd64 git amd64 1:2.47.3-0+deb13u1 [8862 kB] Get:95 http://deb.debian.org/debian trixie/main amd64 libatomic1 amd64 14.2.0-19 [9308 B] Get:96 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get:97 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:98 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:99 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get:100 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.14.1-2+deb13u5 [391 kB] Get:101 http://deb.debian.org/debian trixie/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Get:102 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get:103 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get:104 http://deb.debian.org/debian trixie/main amd64 libgpg-error0 amd64 1.51-4 [82.1 kB] Get:105 http://deb.debian.org/debian trixie/main amd64 libgcrypt20 amd64 1.11.0-7+deb13u1 [843 kB] Get:106 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.84.4-3~deb13u5 [1521 kB] Get:107 http://deb.debian.org/debian trixie/main amd64 libgomp1 amd64 14.2.0-19 [137 kB] Get:108 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+deb13u1 [75.2 kB] Get:109 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.2.0-1+deb13u1 [479 kB] Get:110 http://deb.debian.org/debian trixie/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get:111 http://deb.debian.org/debian trixie/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get:112 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get:113 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:114 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get:115 http://deb.debian.org/debian trixie/main amd64 libjs-angularjs all 1.8.3-3 [818 kB] Get:116 http://deb.debian.org/debian trixie/main amd64 libjs-bootstrap all 3.4.1+dfsg-6 [173 kB] Get:117 http://deb.debian.org/debian trixie/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Get:118 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:119 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:120 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2+deb13u2 [160 kB] Get:121 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:122 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.3-2.1~deb13u2 [205 kB] Get:123 http://deb.debian.org/debian trixie/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:124 http://deb.debian.org/debian trixie/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get:125 http://deb.debian.org/debian trixie/main amd64 libpango-1.0-0 amd64 1.56.3-1 [226 kB] Get:126 http://deb.debian.org/debian trixie/main amd64 libpangoft2-1.0-0 amd64 1.56.3-1 [55.6 kB] Get:127 http://deb.debian.org/debian trixie/main amd64 libpangocairo-1.0-0 amd64 1.56.3-1 [35.7 kB] Get:128 http://deb.debian.org/debian trixie/main amd64 libpaper2 amd64 2.2.5-0.3+b2 [16.7 kB] Get:129 http://deb.debian.org/debian trixie/main amd64 libpaper-utils amd64 2.2.5-0.3+b2 [16.5 kB] Get:130 http://deb.debian.org/debian trixie/main amd64 libqhull-r8.0 amd64 2020.2-6+b2 [248 kB] Get:131 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB] Get:132 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get:133 http://deb.debian.org/debian trixie/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get:134 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get:135 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.7.0-3+deb13u3 [345 kB] Get:136 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.6+ds-1 [11.0 kB] Get:137 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.6+ds-1 [83.3 kB] Get:138 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get:139 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get:140 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1+deb13u3 [700 kB] Get:141 http://deb.debian.org/debian trixie/main amd64 libxslt1.1 amd64 1.1.35-1.2+deb13u3 [233 kB] Get:142 http://deb.debian.org/debian trixie/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b2 [188 kB] Get:143 http://deb.debian.org/debian trixie/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get:144 http://deb.debian.org/debian trixie/main amd64 libzopfli1 amd64 1.0.3-3 [106 kB] Get:145 http://deb.debian.org/debian trixie/main amd64 zip amd64 3.0-15+deb13u1 [235 kB] Get:146 http://deb.debian.org/debian trixie/main amd64 unzip amd64 6.0-29+deb13u1 [173 kB] Get:147 http://deb.debian.org/debian trixie/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:148 http://deb.debian.org/debian trixie/main amd64 r-base-core amd64 4.5.0-3 [28.6 MB] Get:149 http://deb.debian.org/debian trixie/main amd64 r-cran-littler amd64 0.3.21-1 [107 kB] Get:150 http://deb.debian.org/debian trixie/main amd64 littler all 0.3.21-1 [16.9 kB] Get:151 http://deb.debian.org/debian trixie/main amd64 python-matplotlib-data all 3.10.1+dfsg1-4 [2737 kB] Get:152 http://deb.debian.org/debian trixie/main amd64 python3-attr all 25.3.0-1 [69.5 kB] Get:153 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get:154 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:155 http://deb.debian.org/debian trixie/main amd64 python3.13-tk amd64 3.13.5-2+deb13u5 [108 kB] Get:156 http://deb.debian.org/debian trixie/main amd64 python3-tk amd64 3.13.5-1 [9604 B] Get:157 http://deb.debian.org/debian trixie/main amd64 python3-pil.imagetk amd64 11.1.0-5+deb13u4 [81.5 kB] Get:158 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 11.1.0-5+deb13u4 [513 kB] Get:159 http://deb.debian.org/debian trixie/main amd64 python3-cairo amd64 1.27.0-2 [114 kB] Get:160 http://deb.debian.org/debian trixie/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get:161 http://deb.debian.org/debian trixie/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get:162 http://deb.debian.org/debian trixie/main amd64 python3-reportlab all 4.3.1-1 [1158 kB] Get:163 http://deb.debian.org/debian trixie/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:164 http://deb.debian.org/debian trixie/main amd64 python3-biopython amd64 1.85+dfsg-4 [1672 kB] Get:165 http://deb.debian.org/debian trixie/main amd64 python3-brotli amd64 1.1.0-2+b7 [320 kB] Get:166 http://deb.debian.org/debian trixie/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get:167 http://deb.debian.org/debian trixie/main amd64 python3-charset-normalizer amd64 3.4.2-1 [128 kB] Get:168 http://deb.debian.org/debian trixie/main amd64 python3-configargparse all 1.7-2 [31.4 kB] Get:169 http://deb.debian.org/debian trixie/main amd64 python3-connection-pool all 0.0.3-2 [5584 B] Get:170 http://deb.debian.org/debian trixie/main amd64 python3-contourpy amd64 1.3.1-1+b1 [216 kB] Get:171 http://deb.debian.org/debian trixie/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get:172 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get:173 http://deb.debian.org/debian trixie/main amd64 python3-datrie amd64 0.8.2-5+b2 [129 kB] Get:174 http://deb.debian.org/debian trixie/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get:175 http://deb.debian.org/debian trixie/main amd64 python3-roman all 5.0-1 [10.6 kB] Get:176 http://deb.debian.org/debian trixie/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get:177 http://deb.debian.org/debian trixie/main amd64 python3-dpath all 2.2.0-1 [19.9 kB] Get:178 http://deb.debian.org/debian trixie/main amd64 python3-fastjsonschema all 2.21.1-1 [22.4 kB] Get:179 http://deb.debian.org/debian trixie/main amd64 python3-platformdirs all 4.3.7-1 [16.6 kB] Get:180 http://deb.debian.org/debian trixie/main amd64 python3-fs all 2.4.16-7 [95.2 kB] Get:181 http://deb.debian.org/debian trixie/main amd64 python3-lxml amd64 5.4.0-1 [1297 kB] Get:182 http://deb.debian.org/debian trixie/main amd64 python3-lz4 amd64 4.4.0+dfsg-2 [25.3 kB] Get:183 http://deb.debian.org/debian trixie/main amd64 python3-scipy amd64 1.15.3-1 [16.3 MB] Get:184 http://deb.debian.org/debian trixie/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get:185 http://deb.debian.org/debian trixie/main amd64 python3-sympy all 1.13.3-5 [4148 kB] Get:186 http://deb.debian.org/debian trixie/main amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.0 kB] Get:187 http://deb.debian.org/debian trixie/main amd64 python3-unicodedata2 amd64 15.1.0+ds-1+b4 [299 kB] Get:188 http://deb.debian.org/debian trixie/main amd64 python3-zopfli amd64 0.2.3.post1-1+b1 [10.5 kB] Get:189 http://deb.debian.org/debian trixie/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get:190 http://deb.debian.org/debian trixie/main amd64 python3-fonttools amd64 4.57.0-1+deb13u1 [1438 kB] Get:191 http://deb.debian.org/debian trixie/main amd64 python3-smmap all 6.0.0-1 [20.1 kB] Get:192 http://deb.debian.org/debian trixie/main amd64 python3-gitdb all 4.0.12-1 [45.8 kB] Get:193 http://deb.debian.org/debian trixie/main amd64 python3-git all 3.1.44-1 [147 kB] Get:194 http://deb.debian.org/debian trixie/main amd64 python3-humanfriendly all 10.0-6 [85.6 kB] Get:195 http://deb.debian.org/debian trixie/main amd64 python3-idna all 3.10-1+deb13u1 [43.0 kB] Get:196 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.7.0-1 [67.4 kB] Get:197 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get:198 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.2-1 [37.3 kB] Get:199 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get:200 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.1-1+deb13u1 [8492 B] Get:201 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:202 http://deb.debian.org/debian trixie/main amd64 python3-markupsafe amd64 2.1.5-1+b3 [14.0 kB] Get:203 http://deb.debian.org/debian trixie/main amd64 python3-jinja2 all 3.1.6-1 [107 kB] Get:204 http://deb.debian.org/debian trixie/main amd64 python3-rpds-py amd64 0.21.0-2+b1 [257 kB] Get:205 http://deb.debian.org/debian trixie/main amd64 python3-referencing all 0.36.2-1 [23.7 kB] Get:206 http://deb.debian.org/debian trixie/main amd64 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Get:207 http://deb.debian.org/debian trixie/main amd64 python3-jsonschema all 4.19.2-6 [71.4 kB] Get:208 http://deb.debian.org/debian trixie/main amd64 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Get:209 http://deb.debian.org/debian trixie/main amd64 python3-jupyter-core all 5.7.2-5 [35.3 kB] Get:210 http://deb.debian.org/debian trixie/main amd64 python3-kiwisolver amd64 1.4.7-3+b1 [62.0 kB] Get:211 http://deb.debian.org/debian trixie/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get:212 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get:213 http://deb.debian.org/debian trixie/main amd64 python3-matplotlib amd64 3.10.1+dfsg1-4 [23.8 MB] Get:214 http://deb.debian.org/debian trixie/main amd64 python3-nbformat all 5.9.1-1 [45.1 kB] Get:215 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get:216 http://deb.debian.org/debian trixie/main amd64 python3-plac all 1.4.3-2 [65.7 kB] Get:217 http://deb.debian.org/debian trixie/main amd64 python3-psutil amd64 7.0.0-2 [220 kB] Get:218 http://deb.debian.org/debian trixie/main amd64 python3-pulp all 2.7.0+dfsg-4 [72.4 kB] Get:219 http://deb.debian.org/debian trixie/main amd64 python3-py all 1.11.0-4 [88.8 kB] Get:220 http://deb.debian.org/debian trixie/main amd64 python3-ratelimiter amd64 1.2.0.post0-4 [5740 B] Get:221 http://deb.debian.org/debian trixie/main amd64 python3-urllib3 all 2.3.0-3+deb13u2 [115 kB] Get:222 http://deb.debian.org/debian trixie/main amd64 python3-requests all 2.32.3+dfsg-5+deb13u1 [72.2 kB] Get:223 http://deb.debian.org/debian trixie/main amd64 python3-retry all 0.9.2-3 [7088 B] Get:224 http://deb.debian.org/debian trixie/main amd64 python3-wrapt amd64 1.15.0-4+b1 [43.6 kB] Get:225 http://deb.debian.org/debian trixie/main amd64 python3-smart-open all 7.1.0-1 [98.7 kB] Get:226 http://deb.debian.org/debian trixie/main amd64 python3-stopit all 1.1.2-3 [12.8 kB] Get:227 http://deb.debian.org/debian trixie/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] Get:228 http://deb.debian.org/debian trixie/main amd64 python3-throttler all 1.2.2-2 [7072 B] Get:229 http://deb.debian.org/debian trixie/main amd64 python3-toposort all 1.10-2 [7336 B] Get:230 http://deb.debian.org/debian trixie/main amd64 python3-yaml amd64 6.0.2-1+b2 [136 kB] Get:231 http://deb.debian.org/debian trixie/main amd64 python3-yte all 1.5.4-1 [13.6 kB] Get:232 http://deb.debian.org/debian trixie/main amd64 r-bioc-biocgenerics all 0.52.0-2 [627 kB] Get:233 http://deb.debian.org/debian trixie/main amd64 r-cran-cli amd64 3.6.4-1 [1370 kB] Get:234 http://deb.debian.org/debian trixie/main amd64 r-cran-glue amd64 1.8.0-1 [165 kB] Get:235 http://deb.debian.org/debian trixie/main amd64 r-cran-rlang amd64 1.1.5-3 [1709 kB] Get:236 http://deb.debian.org/debian trixie/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get:237 http://deb.debian.org/debian trixie/main amd64 r-cran-gtable all 0.3.6+dfsg-1 [228 kB] Get:238 http://deb.debian.org/debian trixie/main amd64 r-cran-isoband amd64 0.2.7-1 [1614 kB] Get:239 http://deb.debian.org/debian trixie/main amd64 r-cran-mass amd64 7.3-65-1 [1113 kB] Get:240 http://deb.debian.org/debian trixie/main amd64 r-cran-lattice amd64 0.22-7-1 [1418 kB] Get:241 http://deb.debian.org/debian trixie/main amd64 r-cran-nlme amd64 3.1.168-1 [2329 kB] Get:242 http://deb.debian.org/debian trixie/main amd64 r-cran-matrix amd64 1.7-3-1 [4048 kB] Get:243 http://deb.debian.org/debian trixie/main amd64 r-cran-mgcv amd64 1.9-3-1 [3378 kB] Get:244 http://deb.debian.org/debian trixie/main amd64 r-cran-farver amd64 2.1.2-1 [1411 kB] Get:245 http://deb.debian.org/debian trixie/main amd64 r-cran-labeling all 0.4.3-1 [62.4 kB] Get:246 http://deb.debian.org/debian trixie/main amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1716 kB] Get:247 http://deb.debian.org/debian trixie/main amd64 r-cran-munsell all 0.5.1-1 [237 kB] Get:248 http://deb.debian.org/debian trixie/main amd64 r-cran-r6 all 2.6.1-1 [106 kB] Get:249 http://deb.debian.org/debian trixie/main amd64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get:250 http://deb.debian.org/debian trixie/main amd64 r-cran-viridislite all 0.4.2-2 [1299 kB] Get:251 http://deb.debian.org/debian trixie/main amd64 r-cran-scales all 1.3.0-1 [677 kB] Get:252 http://deb.debian.org/debian trixie/main amd64 r-cran-fansi amd64 1.0.6-2 [629 kB] Get:253 http://deb.debian.org/debian trixie/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB] Get:254 http://deb.debian.org/debian trixie/main amd64 r-cran-utf8 amd64 1.2.4-1 [133 kB] Get:255 http://deb.debian.org/debian trixie/main amd64 r-cran-vctrs amd64 0.6.5-1 [1375 kB] Get:256 http://deb.debian.org/debian trixie/main amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] Get:257 http://deb.debian.org/debian trixie/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get:258 http://deb.debian.org/debian trixie/main amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [425 kB] Get:259 http://deb.debian.org/debian trixie/main amd64 r-cran-withr all 3.0.2+dfsg-1 [226 kB] Get:260 http://deb.debian.org/debian trixie/main amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3933 kB] Get:261 http://deb.debian.org/debian trixie/main amd64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get:262 http://deb.debian.org/debian trixie/main amd64 r-cran-rcpp amd64 1.0.14-1 [2080 kB] Get:263 http://deb.debian.org/debian trixie/main amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] Get:264 http://deb.debian.org/debian trixie/main amd64 r-cran-stringi amd64 1.8.4-1+b1 [896 kB] Get:265 http://deb.debian.org/debian trixie/main amd64 r-cran-stringr all 1.5.1-1 [296 kB] Get:266 http://deb.debian.org/debian trixie/main amd64 r-cran-reshape2 amd64 1.4.4-2 [114 kB] Get:267 http://deb.debian.org/debian trixie/main amd64 r-cran-gridextra all 2.3-3 [1024 kB] Get:268 http://deb.debian.org/debian trixie/main amd64 r-cran-xml amd64 3.99-0.18-1 [1762 kB] Get:269 http://deb.debian.org/debian trixie/main amd64 r-bioc-savr all 1.37.0-6 [632 kB] Get:270 http://deb.debian.org/debian trixie/main amd64 r-cran-sparsem amd64 1.84-2-1+b1 [794 kB] Get:271 http://deb.debian.org/debian trixie/main amd64 r-cran-matrixmodels all 0.5-4-1 [354 kB] Get:272 http://deb.debian.org/debian trixie/main amd64 r-cran-survival amd64 3.8-3-1 [8265 kB] Get:273 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trixie/main amd64 r-cran-proc amd64 1.18.5-1 [987 kB] Get:284 http://deb.debian.org/debian trixie/main amd64 r-cran-generics all 0.1.3-1 [81.4 kB] Get:285 http://deb.debian.org/debian trixie/main amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [223 kB] Get:286 http://deb.debian.org/debian trixie/main amd64 r-cran-dplyr amd64 1.1.4-4 [1543 kB] Get:287 http://deb.debian.org/debian trixie/main amd64 r-cran-cpp11 all 0.5.2-1 [226 kB] Get:288 http://deb.debian.org/debian trixie/main amd64 r-cran-tzdb amd64 0.5.0-1 [515 kB] Get:289 http://deb.debian.org/debian trixie/main amd64 r-cran-clock amd64 0.7.2-1 [1823 kB] Get:290 http://deb.debian.org/debian trixie/main amd64 r-cran-gower amd64 1.0.2-1 [209 kB] Get:291 http://deb.debian.org/debian trixie/main amd64 r-cran-sparsevctrs amd64 0.2.0-2 [177 kB] Get:292 http://deb.debian.org/debian trixie/main amd64 r-cran-hardhat all 1.4.1+dfsg-1 [697 kB] Get:293 http://deb.debian.org/debian trixie/main amd64 r-cran-rpart amd64 4.1.24-1 [689 kB] Get:294 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r-cran-numderiv all 2016.8-1.1-3 [115 kB] Get:305 http://deb.debian.org/debian trixie/main amd64 r-cran-progressr all 0.15.1-1 [352 kB] Get:306 http://deb.debian.org/debian trixie/main amd64 r-cran-squarem all 2021.1-1 [179 kB] Get:307 http://deb.debian.org/debian trixie/main amd64 r-cran-lava all 1.8.1+dfsg-1 [2230 kB] Get:308 http://deb.debian.org/debian trixie/main amd64 r-cran-prodlim amd64 2024.06.25-1 [416 kB] Get:309 http://deb.debian.org/debian trixie/main amd64 r-cran-ipred amd64 0.9-15-1 [387 kB] Get:310 http://deb.debian.org/debian trixie/main amd64 r-cran-timechange amd64 0.3.0-2 [174 kB] Get:311 http://deb.debian.org/debian trixie/main amd64 r-cran-lubridate amd64 1.9.4+dfsg-1 [1013 kB] Get:312 http://deb.debian.org/debian trixie/main amd64 r-cran-purrr amd64 1.0.4-1 [556 kB] Get:313 http://deb.debian.org/debian trixie/main amd64 r-cran-tidyr amd64 1.3.1-1 [1163 kB] Get:314 http://deb.debian.org/debian trixie/main amd64 r-cran-timedate amd64 4041.110-1 [1211 kB] Get:315 http://deb.debian.org/debian trixie/main amd64 r-cran-recipes all 1.1.0+dfsg-1 [2047 kB] Get:316 http://deb.debian.org/debian trixie/main amd64 r-cran-caret amd64 7.0-1+dfsg-1 [3471 kB] Get:317 http://deb.debian.org/debian trixie/main amd64 r-cran-conquer amd64 1.3.3-1 [471 kB] Get:318 http://deb.debian.org/debian trixie/main amd64 r-cran-quantreg amd64 6.1-1 [1442 kB] Get:319 http://deb.debian.org/debian trixie/main amd64 snakemake all 7.32.4-7 [318 kB] Get:320 http://deb.debian.org/debian trixie/main amd64 qcumber all 2.3.0-2 [50.5 kB] Preconfiguring packages ... Fetched 260 MB in 5s (57.6 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4955 files and directories currently installed.) Preparing to unpack .../libexpat1_2.8.3-1~deb13u1_amd64.deb ... Unpacking libexpat1:amd64 (2.8.3-1~deb13u1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.5-2+deb13u5_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.5-2+deb13u5) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.5-2+deb13u5_amd64.deb ... Unpacking python3.13-minimal (3.13.5-2+deb13u5) ... Setting up libpython3.13-minimal:amd64 (3.13.5-2+deb13u5) ... Setting up libexpat1:amd64 (2.8.3-1~deb13u1) ... Setting up python3.13-minimal (3.13.5-2+deb13u5) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.5-2+deb13u5_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.5-2+deb13u5) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.5-2+deb13u5_amd64.deb ... Unpacking python3.13 (3.13.5-2+deb13u5) ... 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Setting up python-matplotlib-data (3.10.1+dfsg1-4) ... Setting up openssl (3.5.7-1~deb13u2) ... Setting up libwebpmux3:amd64 (1.5.0-0.1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.1+deb13u3) ... Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up libjs-bootstrap (3.4.1+dfsg-6) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up liblapack3:amd64 (3.12.1-6) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up fontconfig-config (2.15.0-2.3) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up libpaper-utils (2.2.5-0.3+b2) ... Setting up coinor-libcoinutils3v5:amd64 (2.11.11+ds-5) ... Setting up libperl5.40:amd64 (5.40.1-6+deb13u1) ... Setting up libthai0:amd64 (0.1.29-2+b1) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up perl (5.40.1-6+deb13u1) ... Setting up libglib2.0-0t64:amd64 (2.84.4-3~deb13u5) ... No schema files found: doing nothing. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1+deb13u1) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5+deb13u1) ... Setting up ucf (3.0052) ... Setting up coinor-libosi1v5:amd64 (0.108.10+ds-2) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:amd64 (1.1.35-1.2+deb13u3) ... Setting up libharfbuzz0b:amd64 (10.2.0-1+deb13u1) ... Setting up libxss1:amd64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:amd64 (2.15.0-2.3) ... Setting up libsm6:amd64 (2:1.2.6-1) ... Setting up libpython3.13-stdlib:amd64 (3.13.5-2+deb13u5) ... Setting up libpython3-stdlib:amd64 (3.13.5-1) ... Setting up libgnutls30t64:amd64 (3.8.9-3+deb13u4) ... Setting up fontconfig (2.15.0-2.3) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1+b4) ... Setting up libtirpc3t64:amd64 (1.3.6+ds-1) ... Setting up python3.13 (3.13.5-2+deb13u5) ... Setting up libtk8.6:amd64 (8.6.16-1) ... Setting up libpango-1.0-0:amd64 (1.56.3-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.5-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-markupsafe (2.1.5-1+b3) ... Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up python3.13-tk (3.13.5-2+deb13u5) ... Setting up python3-plac (1.4.3-2) ... Setting up python3-platformdirs (4.3.7-1) ... Setting up python3-psutil (7.0.0-2) ... Setting up python3-zopfli (0.2.3.post1-1+b1) ... Setting up python3-ratelimiter (1.2.0.post0-4) ... Setting up python3-fs (2.4.16-7) ... Setting up liberror-perl (0.17030-1) ... Setting up python3-roman (5.0-1) ... Setting up python3-decorator (5.2.1-2) ... Setting up python3-jinja2 (3.1.6-1) ... Setting up python3-packaging (25.0-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-humanfriendly (10.0-6) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up coinor-libclp1:amd64 (1.17.10+ds-1) ... Setting up python3-brotli (1.1.0-2+b7) ... Setting up libraqm0:amd64 (0.10.2-1) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-dpath (2.2.0-1) ... Setting up python3-connection-pool (0.0.3-2) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2+b2) ... Setting up python3-kiwisolver (1.4.7-3+b1) ... Setting up python3-idna (3.10-1+deb13u1) ... Setting up python3-wrapt (1.15.0-4+b1) ... Setting up python3-throttler (1.2.2-2) ... Setting up python3-typing-extensions (4.13.2-1) ... Setting up python3-numpy (1:2.2.4+ds-1) ... Setting up python3-urllib3 (2.3.0-3+deb13u2) ... Setting up python3-rpds-py (0.21.0-2+b1) ... Setting up python3-fastjsonschema (2.21.1-1) ... Setting up python3-lxml:amd64 (5.4.0-1) ... Setting up python3-traitlets (5.14.3+really5.14.3-1) ... Setting up python3-dateutil (2.9.0-4) ... Setting up python3-contourpy (1.3.1-1+b1) ... Setting up coinor-libcgl1:amd64 (0.60.9+ds-1) ... Setting up python3-datrie:amd64 (0.8.2-5+b2) ... Setting up libpangoft2-1.0-0:amd64 (1.56.3-1) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-smmap (6.0.0-1) ... Setting up python3-jupyter-core (5.7.2-5) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.11.0-1+deb13u1) ... Setting up libpangocairo-1.0-0:amd64 (1.56.3-1) ... Setting up python3-toposort (1.10-2) ... Setting up python3-more-itertools (10.7.0-1) ... Setting up python3-configargparse (1.7-2) ... Setting up python3-sympy (1.13.3-5) ... Setting up python3-attr (25.3.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... Setting up python3-scipy (1.15.3-1) ... Setting up python3-cairo (1.27.0-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-smart-open (7.1.0-1) ... Setting up python3-py (1.11.0-4) ... Setting up python3-jaraco.context (6.0.1-1+deb13u1) ... Setting up libcurl4t64:amd64 (8.14.1-2+deb13u5) ... Setting up python3-lz4 (4.4.0+dfsg-2) ... Setting up python3-charset-normalizer (3.4.2-1) ... Setting up python3-unicodedata2 (15.1.0+ds-1+b4) ... Setting up blt (2.5.3+dfsg-8) ... Setting up python3-typeguard (4.4.2-1) ... Setting up libcurl3t64-gnutls:amd64 (8.14.1-2+deb13u5) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-yaml (6.0.2-1+b2) ... Setting up python3-tk:amd64 (3.13.5-1) ... Setting up python3-gitdb (4.0.12-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-yte (1.5.4-1) ... Setting up python3-pil:amd64 (11.1.0-5+deb13u4) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pil.imagetk:amd64 (11.1.0-5+deb13u4) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-requests (2.32.3+dfsg-5+deb13u1) ... Setting up r-base-core (4.5.0-3) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-squarem (2021.1-1) ... Setting up r-cran-labeling (0.4.3-1) ... Setting up coinor-libcbc3.1:amd64 (2.10.12+ds-1) ... Setting up python3-retry (0.9.2-3) ... Setting up git (1:2.47.3-0+deb13u1) ... Setting up r-cran-lattice (0.22-7-1) ... Setting up r-cran-nlme (3.1.168-1) ... Setting up r-cran-farver (2.1.2-1) ... Setting up python3-reportlab (4.3.1-1) ... Setting up r-cran-xml (3.99-0.18-1) ... Setting up r-cran-viridislite (0.4.2-2) ... Setting up r-cran-sparsem (1.84-2-1+b1) ... Setting up r-cran-nnet (7.3-20-1) ... Setting up r-cran-proxy (0.4-27-1) ... Setting up r-cran-r6 (2.6.1-1) ... Setting up r-cran-pkgkitten (0.2.4-1) ... Setting up r-cran-numderiv (2016.8-1.1-3) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up python3-referencing (0.36.2-1) ... Setting up r-cran-littler (0.3.21-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up r-cran-rcpp (1.0.14-1) ... Setting up r-cran-codetools (0.2-20-1) ... Setting up r-bioc-biocgenerics (0.52.0-2) ... Setting up r-cran-rlang (1.1.5-3) ... Setting up r-cran-matrixstats (1.5.0-1) ... Setting up r-cran-listenv (0.9.1+dfsg-1) ... Setting up littler (0.3.21-1) ... Setting up r-cran-withr (3.0.2+dfsg-1) ... Setting up r-cran-generics (0.1.3-1) ... Setting up r-cran-iterators (1.0.14-1) ... Setting up r-cran-digest (0.6.37-1) ... Setting up r-cran-gower (1.0.2-1) ... Setting up r-cran-timedate (4041.110-1) ... Setting up r-cran-foreach (1.5.2-1) ... Setting up r-cran-fansi (1.0.6-2) ... Setting up r-cran-mass (7.3-65-1) ... Setting up r-cran-data.table (1.17.0+dfsg-1) ... Setting up r-cran-glue (1.8.0-1) ... Setting up r-cran-cli (3.6.4-1) ... Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... Setting up r-cran-progressr (0.15.1-1) ... Setting up r-cran-shape (1.4.6.1-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-utf8 (1.2.4-1) ... Setting up r-cran-colorspace (2.1-1+dfsg-1) ... Setting up r-cran-parallelly (1.42.0-1) ... Setting up coinor-cbc (2.10.12+ds-1) ... Setting up r-cran-stringi (1.8.4-1+b1) ... Setting up r-cran-cpp11 (0.5.2-1) ... Setting up r-cran-plyr (1.8.9-1) ... Setting up r-cran-rcolorbrewer (1.1-3-1) ... Setting up r-cran-isoband (0.2.7-1) ... Setting up python3-git (3.1.44-1) ... Setting up r-cran-diagram (1.6.5-2) ... Setting up r-cran-gtable (0.3.6+dfsg-1) ... Setting up r-cran-matrix (1.7-3-1) ... Setting up r-cran-kernsmooth (2.23-26-1) ... Setting up r-cran-mgcv (1.9-3-1) ... Setting up python3-stopit (1.1.2-3) ... Setting up r-cran-rcpparmadillo (14.4.2-1-1) ... Setting up r-cran-tzdb (0.5.0-1) ... Setting up r-cran-globals (0.16.3-1) ... Setting up python3-jsonschema-specifications (2023.12.1-2) ... Setting up r-cran-vctrs (0.6.5-1) ... Setting up r-cran-pillar (1.10.1+dfsg-1) ... Setting up r-cran-stringr (1.5.1-1) ... Setting up r-cran-class (7.3-23-1) ... Setting up r-cran-modelmetrics (1.2.2.2-1+b1) ... Setting up python3-pulp (2.7.0+dfsg-4) ... /usr/lib/python3/dist-packages/pulp/apis/xpress_api.py:325: SyntaxWarning: invalid escape sequence '\ ' otherwise be interpreted by the Tcl shell: \ $ " [ Setting up r-cran-matrixmodels (0.5-4-1) ... Setting up r-cran-sparsevctrs (0.2.0-2) ... Setting up r-cran-munsell (0.5.1-1) ... Setting up r-cran-tibble (3.2.1+dfsg-3) ... Setting up r-cran-clock (0.7.2-1) ... Setting up r-cran-proc (1.18.5-1) ... Setting up r-cran-survival (3.8-3-1) ... Setting up r-cran-future (1.34.0+dfsg-1) ... Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... Setting up r-cran-reshape2 (1.4.4-2) ... Setting up r-cran-future.apply (1.11.3+dfsg-1) ... Setting up r-cran-timechange (0.3.0-2) ... Setting up python3-jsonschema (4.19.2-6) ... Setting up r-cran-gridextra (2.3-3) ... Setting up r-cran-scales (1.3.0-1) ... Setting up r-cran-lava (1.8.1+dfsg-1) ... Setting up r-cran-purrr (1.0.4-1) ... Setting up r-cran-e1071 (1.7-16-1) ... Setting up r-cran-hardhat (1.4.1+dfsg-1) ... Setting up r-cran-dplyr (1.1.4-4) ... Setting up r-cran-lubridate (1.9.4+dfsg-1) ... Setting up r-cran-prodlim (2024.06.25-1) ... Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... Setting up r-cran-rpart (4.1.24-1) ... Setting up python3-nbformat (5.9.1-1) ... Setting up r-bioc-savr (1.37.0-6) ... Setting up r-cran-ipred (0.9-15-1) ... Setting up r-cran-tidyr (1.3.1-1) ... Setting up r-cran-recipes (1.1.0+dfsg-1) ... Setting up r-cran-caret (7.0-1+dfsg-1) ... Setting up r-cran-conquer (1.3.3-1) ... Setting up r-cran-quantreg (6.1-1) ... Setting up python3-fonttools (4.57.0-1+deb13u1) ... Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... Setting up python3-matplotlib (3.10.1+dfsg1-4) ... Processing triggers for libc-bin (2.41-12+deb13u4) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up docutils-common (0.21.2+dfsg-2) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.85+dfsg-4) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up snakemake (7.32.4-7) ... Setting up qcumber (2.3.0-2) ... ************************************************************************* * Minikraken DB is missing. Either move the according files to * * /var/lib/kraken/minikraken_20141208 * or call the script /usr/share/doc/qcumber/get-minikrakendb as root. * ************************************************************************* Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m37.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-get', '-y', 'install', 'qcumber'] 1m37.5s INFO: Running scripts post_install 1m37.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_install_exceptions'] 1m37.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_install_exceptions'] 1m37.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc'] 1m39.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc'] 1m39.5s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpr5jbibwc to testing 1m39.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 1m39.5s INFO: Running scripts pre_distupgrade 1m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_distupgrade_exceptions'] 1m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_distupgrade_exceptions'] 1m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m39.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m39.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-get', 'update'] 1m42.1s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [151 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [10.1 MB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6657 kB] Fetched 16.9 MB in 2s (10.4 MB/s) Reading package lists... 1m42.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-get', 'update'] 1m42.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-get', '-yf', 'dist-upgrade'] 3m5.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: blt coinor-cbc coinor-libcbc3.1 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-glyphicons-halflings fonts-lyx fonts-urw-base35 git git-man libabsl20260526 libaom3 libatomic1 libavif16 libblas3 libbrotli1 libcairo2 libcom-err2 libcurl3t64-gnutls libcurl4-gnutls libcurl4t64 libdatrie1 libdav1d7 libdeflate0 liberror-perl libexpat1 libffi8 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgav1-2 libgcrypt20 libgfortran5 libglib2.0-0t64 libgnutls30t64 libgomp1 libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz-subset0 libharfbuzz0b libice6 libicu76 libicu78 libimagequant0 libjbig0 libjpeg62-turbo libjs-angularjs libjs-bootstrap libjs-d3 libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap2 liblerc4 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libopenjp2-7 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libperl5.40 libpixman-1-0 libpng16-16t64 libproc2-0 libproc2-1 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 libraqm0 librav1e0.8 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libssh2-1t64 libsvtav1enc4 libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxml2-16 libxrender1 libxslt1.1 libxss1 libxt6t64 libyaml-0-2 libyuv0 libzopfli1 littler media-types perl-modules-5.40 procps python-matplotlib-data python3 python3-attr python3-autocommand python3-biopython python3-brotli python3-cairo python3-certifi python3-chardet python3-charset-normalizer python3-configargparse python3-connection-pool python3-contourpy python3-cycler python3-dateutil python3-datrie python3-decorator python3-docutils python3-dpath python3-fastjsonschema python3-fonttools python3-freetype python3-git python3-gitdb python3-humanfriendly python3-idna python3-inflect python3-jaraco.context python3-jaraco.functools python3-jinja2 python3-jsonschema python3-jsonschema-specifications python3-jupyter-core python3-kiwisolver python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-mpmath python3-nbformat python3-numpy python3-numpy-dev python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-plac python3-platformdirs python3-psutil python3-pulp python3-py python3-pyparsing python3-ratelimiter python3-referencing python3-reportlab python3-requests python3-retry python3-rlpycairo python3-roman python3-roman-numerals python3-rpds-py python3-scipy python3-smart-open python3-smmap python3-stopit python3-sympy python3-tabulate python3-throttler python3-tk python3-toposort python3-traitlets python3-typeguard python3-typing-extensions python3-ufolib2 python3-uharfbuzz python3-unicodedata2 python3-urllib3 python3-wrapt python3-yaml python3-yte python3-zopfli python3.13 python3.13-minimal python3.13-tk python3.14 python3.14-minimal python3.14-tk r-base-core r-bioc-biocgenerics r-cran-caret r-cran-class r-cran-cli r-cran-clock r-cran-codetools r-cran-colorspace r-cran-conquer r-cran-cpp11 r-cran-data.table r-cran-diagram r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-fansi r-cran-farver r-cran-foreach r-cran-future r-cran-future.apply r-cran-generics r-cran-ggplot2 r-cran-globals r-cran-glue r-cran-gower r-cran-gridextra r-cran-gtable r-cran-hardhat r-cran-ipred r-cran-isoband r-cran-iterators r-cran-kernsmooth r-cran-labeling r-cran-lattice r-cran-lava r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lubridate r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixmodels r-cran-matrixstats r-cran-mgcv r-cran-modelmetrics r-cran-munsell r-cran-nlme r-cran-nnet r-cran-numderiv r-cran-parallelly r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-proc r-cran-prodlim r-cran-progressr r-cran-proxy r-cran-purrr r-cran-quantreg r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-recipes r-cran-reshape2 r-cran-rlang r-cran-rpart r-cran-s7 r-cran-scales r-cran-shape r-cran-sparsem r-cran-sparsevctrs r-cran-squarem r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-timechange r-cran-timedate r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xml r-pkg-team-core-architecture readline-common sgml-base snakemake tk8.6-blt2.5 ucf unicode-data unzip w3c-sgml-lib x11-common xdg-utils xfonts-encodings xfonts-utils xml-core zip Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: python3-fs qcumber r-bioc-savr The following NEW packages will be installed: fonts-dejavu-extra gcc-16-base libabsl20260526 libaom3 libavif16 libc-gconv-modules-extra libcurl4-gnutls libdav1d7 libgav1-2 libharfbuzz-subset0 libicu78 libngtcp2-crypto-ossl0 libperl5.42 libproc2-1 libpython3.14-minimal libpython3.14-stdlib librav1e0.8 libsvtav1enc4 libxml2-16 libyuv0 perl-modules-5.42 python3-roman-numerals python3-uharfbuzz python3.14 python3.14-minimal python3.14-tk r-cran-s7 r-pkg-team-core-architecture The following packages will be upgraded: apt base-files base-passwd bash blt bsdutils ca-certificates coinor-cbc coinor-libcbc3.1 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 coreutils debconf debianutils diffutils docutils-common dpkg findutils fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-glyphicons-halflings fonts-lyx fonts-urw-base35 gcc-14-base git git-man grep gzip init-system-helpers libacl1 libapt-pkg7.0 libatomic1 libattr1 libaudit-common libaudit1 libblas3 libblkid1 libbrotli1 libbsd0 libbz2-1.0 libc-bin libc6 libcairo2 libcap-ng0 libcap2 libcom-err2 libcrypt1 libcurl3t64-gnutls libcurl4t64 libdatrie1 libdb5.3t64 libdebconfclient0 libdeflate0 libexpat1 libffi8 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-s1 libgcrypt20 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libgmp10 libgnutls30t64 libgomp1 libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed6t64 libice6 libidn2-0 libimagequant0 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblastlog2-2 liblcms2-2 libldap2 liblerc4 liblz4-1 liblzma5 libmd0 libmount1 libncursesw6 libnettle8t64 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libopenjp2-7 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-8-0 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsharpyuv0 libsm6 libsmartcols1 libsqlite3-0 libssh2-1t64 libssl3t64 libstdc++6 libsystemd0 libtasn1-6 libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtinfo6 libtirpc-common libtirpc3t64 libtk8.6 libudev1 libunistring5 libuuid1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxslt1.1 libxss1 libxt6t64 libxxhash0 libyaml-0-2 libzstd1 littler login login.defs mawk media-types mount ncurses-base ncurses-bin netbase openssl openssl-provider-legacy passwd perl perl-base procps python-matplotlib-data python3 python3-attr python3-autocommand python3-biopython python3-brotli python3-cairo python3-certifi python3-charset-normalizer python3-configargparse python3-contourpy python3-cycler python3-dateutil python3-datrie python3-decorator python3-docutils python3-dpath python3-fastjsonschema python3-fonttools python3-freetype python3-git python3-gitdb python3-humanfriendly python3-idna python3-inflect python3-jaraco.context python3-jinja2 python3-jsonschema python3-jsonschema-specifications python3-jupyter-core python3-kiwisolver python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-mpmath python3-nbformat python3-numpy python3-numpy-dev python3-packaging python3-pil python3-pil.imagetk python3-plac python3-platformdirs python3-psutil python3-pulp python3-pyparsing python3-referencing python3-reportlab python3-requests python3-retry python3-rlpycairo python3-roman python3-rpds-py python3-scipy python3-smart-open python3-smmap python3-stopit python3-sympy python3-tabulate python3-throttler python3-tk python3-traitlets python3-typeguard python3-typing-extensions python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-wrapt python3-yaml python3-zopfli python3.13 python3.13-minimal python3.13-tk r-base-core r-bioc-biocgenerics r-cran-caret r-cran-class r-cran-cli r-cran-clock r-cran-colorspace r-cran-cpp11 r-cran-data.table r-cran-diagram r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-fansi r-cran-farver r-cran-future r-cran-future.apply r-cran-generics r-cran-ggplot2 r-cran-globals r-cran-glue r-cran-gower r-cran-gridextra r-cran-gtable r-cran-hardhat r-cran-ipred r-cran-isoband r-cran-kernsmooth r-cran-labeling r-cran-lattice r-cran-lava r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lubridate r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixmodels r-cran-matrixstats r-cran-mgcv r-cran-modelmetrics r-cran-munsell r-cran-nlme r-cran-nnet r-cran-parallelly r-cran-pillar r-cran-pkgconfig r-cran-plyr r-cran-proc r-cran-prodlim r-cran-progressr r-cran-proxy r-cran-purrr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-recipes r-cran-reshape2 r-cran-rlang r-cran-rpart r-cran-scales r-cran-shape r-cran-sparsevctrs r-cran-squarem r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-timechange r-cran-timedate r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xml readline-common sed sensible-utils snakemake sqv sysvinit-utils tar tk8.6-blt2.5 tzdata ucf unicode-data unzip util-linux x11-common xml-core zip zlib1g 361 upgraded, 28 newly installed, 3 to remove and 0 not upgraded. Need to get 309 MB of archives. After this operation, 160 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 libc-gconv-modules-extra amd64 2.43-7 [1103 kB] Get:2 http://deb.debian.org/debian forky/main amd64 libc6 amd64 2.43-7 [1866 kB] Get:3 http://deb.debian.org/debian forky/main amd64 libc-bin amd64 2.43-7 [621 kB] Get:4 http://deb.debian.org/debian forky/main amd64 gcc-16-base amd64 16.2.0-3 [38.7 kB] Get:5 http://deb.debian.org/debian forky/main amd64 libgcc-s1 amd64 16.2.0-3 [74.0 kB] Get:6 http://deb.debian.org/debian forky/main amd64 base-files amd64 14.2 [88.0 kB] Get:7 http://deb.debian.org/debian forky/main amd64 debianutils amd64 5.24 [93.3 kB] Get:8 http://deb.debian.org/debian forky/main amd64 bash amd64 5.3-4 [1582 kB] Get:9 http://deb.debian.org/debian forky/main amd64 coreutils amd64 9.10-1 [3142 kB] Get:10 http://deb.debian.org/debian forky/main amd64 diffutils amd64 1:3.12-1 [405 kB] Get:11 http://deb.debian.org/debian forky/main amd64 libbz2-1.0 amd64 1.0.8-6+b2 [39.9 kB] Get:12 http://deb.debian.org/debian forky/main amd64 libxxhash0 amd64 0.8.3-2+b2 [27.1 kB] Get:13 http://deb.debian.org/debian forky/main amd64 liblz4-1 amd64 1.10.0-10 [70.3 kB] Get:14 http://deb.debian.org/debian forky/main amd64 liblzma5 amd64 5.8.4-1 [354 kB] Get:15 http://deb.debian.org/debian forky/main amd64 libssl3t64 amd64 3.6.5-1 [2621 kB] Get:16 http://deb.debian.org/debian forky/main amd64 openssl-provider-legacy amd64 3.6.5-1 [329 kB] Get:17 http://deb.debian.org/debian forky/main amd64 libzstd1 amd64 1.5.7+dfsg-4 [304 kB] Get:18 http://deb.debian.org/debian forky/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.2-3 [90.9 kB] Get:19 http://deb.debian.org/debian forky/main amd64 libstdc++6 amd64 16.2.0-3 [823 kB] Get:20 http://deb.debian.org/debian forky/main amd64 libsystemd0 amd64 262-1 [512 kB] Get:21 http://deb.debian.org/debian forky/main amd64 libudev1 amd64 262-1 [148 kB] Get:22 http://deb.debian.org/debian forky/main amd64 libapt-pkg7.0 amd64 3.3.3 [1284 kB] Get:23 http://deb.debian.org/debian forky/main amd64 dpkg amd64 1.23.11 [1214 kB] Get:24 http://deb.debian.org/debian forky/main amd64 findutils amd64 4.11.0-3 [788 kB] Get:25 http://deb.debian.org/debian forky/main amd64 grep amd64 3.12-1 [443 kB] Get:26 http://deb.debian.org/debian forky/main amd64 gzip amd64 1.14-1 [149 kB] Get:27 http://deb.debian.org/debian forky/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:28 http://deb.debian.org/debian forky/main amd64 libtinfo6 amd64 6.6+20260608-2 [353 kB] Get:29 http://deb.debian.org/debian forky/main amd64 ncurses-bin amd64 6.6+20260608-2 [445 kB] Get:30 http://deb.debian.org/debian forky/main amd64 libtext-charwidth-perl amd64 0.04-12+b1 [9344 B] Get:31 http://deb.debian.org/debian forky/main amd64 perl-modules-5.42 all 5.42.3-1 [3213 kB] Get:32 http://deb.debian.org/debian forky/main amd64 libperl5.42 amd64 5.42.3-1 [4272 kB] Get:33 http://deb.debian.org/debian forky/main amd64 perl amd64 5.42.3-1 [266 kB] Get:34 http://deb.debian.org/debian forky/main amd64 perl-base amd64 5.42.3-1 [1878 kB] Get:35 http://deb.debian.org/debian forky/main amd64 libcrypt1 amd64 1:4.5.2+20251210-1 [100 kB] Get:36 http://deb.debian.org/debian forky/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-11+b1 [709 kB] Get:37 http://deb.debian.org/debian forky/main amd64 libgdbm6t64 amd64 1.26-1+b2 [77.7 kB] Get:38 http://deb.debian.org/debian forky/main amd64 libgdbm-compat4t64 amd64 1.26-1+b2 [52.0 kB] Get:39 http://deb.debian.org/debian forky/main amd64 sed amd64 4.9-3 [331 kB] Get:40 http://deb.debian.org/debian forky/main amd64 tar amd64 1.35+dfsg-6 [825 kB] Get:41 http://deb.debian.org/debian forky/main amd64 libuuid1 amd64 2.42.4-1 [34.5 kB] Get:42 http://deb.debian.org/debian forky/main amd64 bsdutils amd64 1:2.42.4-1 [92.9 kB] Get:43 http://deb.debian.org/debian forky/main amd64 libblkid1 amd64 2.42.4-1 [185 kB] Get:44 http://deb.debian.org/debian forky/main amd64 libmount1 amd64 2.42.4-1 [232 kB] Get:45 http://deb.debian.org/debian forky/main amd64 libsmartcols1 amd64 2.42.4-1 [153 kB] Get:46 http://deb.debian.org/debian forky/main amd64 util-linux amd64 2.42.4-1 [1254 kB] Get:47 http://deb.debian.org/debian forky/main amd64 mount amd64 2.42.4-1 [172 kB] Get:48 http://deb.debian.org/debian forky/main amd64 libpcre2-8-0 amd64 10.48-3.1 [312 kB] Get:49 http://deb.debian.org/debian forky/main amd64 libselinux1 amd64 3.11-2.1 [92.2 kB] Get:50 http://deb.debian.org/debian forky/main amd64 libdebconfclient0 amd64 0.283 [7572 B] Get:51 http://deb.debian.org/debian forky/main amd64 base-passwd amd64 3.6.8 [54.6 kB] Get:52 http://deb.debian.org/debian forky/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5+b2 [560 kB] Get:53 http://deb.debian.org/debian forky/main amd64 libnettle8t64 amd64 3.10.2-1+b1 [305 kB] Get:54 http://deb.debian.org/debian forky/main amd64 libhogweed6t64 amd64 3.10.2-1+b1 [335 kB] Get:55 http://deb.debian.org/debian forky/main amd64 sqv amd64 1.5.0-1 [704 kB] Get:56 http://deb.debian.org/debian forky/main amd64 libseccomp2 amd64 2.6.1-1+b1 [51.7 kB] Get:57 http://deb.debian.org/debian forky/main amd64 apt amd64 3.3.3 [1568 kB] Get:58 http://deb.debian.org/debian forky/main amd64 init-system-helpers all 1.69+nmu3 [37.3 kB] Get:59 http://deb.debian.org/debian forky/main amd64 ncurses-base all 6.6+20260608-2 [276 kB] Get:60 http://deb.debian.org/debian forky/main amd64 sysvinit-utils amd64 3.18-1 [29.7 kB] Get:61 http://deb.debian.org/debian forky/main amd64 libpython3.14-minimal amd64 3.14.8-1 [902 kB] Get:62 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.9.0-1 [133 kB] Get:63 http://deb.debian.org/debian forky/main amd64 python3.14-minimal amd64 3.14.8-1 [2715 kB] Get:64 http://deb.debian.org/debian forky/main amd64 python3-zopfli amd64 0.4.3-2 [10.8 kB] Get:65 http://deb.debian.org/debian forky/main amd64 python3-yaml amd64 6.0.3-1+b1 [138 kB] Get:66 http://deb.debian.org/debian forky/main amd64 python3-wrapt amd64 2.3.0-1 [94.3 kB] Get:67 http://deb.debian.org/debian forky/main amd64 python3-unicodedata2 amd64 17.0.1+ds-1+b1 [325 kB] Get:68 http://deb.debian.org/debian forky/main amd64 python3.13-tk amd64 3.13.15-1 [106 kB] Get:69 http://deb.debian.org/debian forky/main amd64 blt amd64 2.5.3+dfsg-10 [6096 B] Get:70 http://deb.debian.org/debian forky/main amd64 python3-tk amd64 3.14.7-3 [8472 B] Get:71 http://deb.debian.org/debian forky/main amd64 python3-scipy amd64 1.17.1-5+b1 [16.0 MB] Get:72 http://deb.debian.org/debian forky/main amd64 python3-rpds-py amd64 0.30.0-2+b1 [249 kB] Get:73 http://deb.debian.org/debian forky/main amd64 python3-pil.imagetk amd64 12.3.0-1+b1 [83.6 kB] Get:74 http://deb.debian.org/debian forky/main amd64 python3-pil amd64 12.3.0-1+b1 [555 kB] Get:75 http://deb.debian.org/debian forky/main amd64 python3-numpy-dev amd64 1:2.4.6+ds-4+b1 [138 kB] Get:76 http://deb.debian.org/debian forky/main amd64 python3-numpy amd64 1:2.4.6+ds-4+b1 [5140 kB] Get:77 http://deb.debian.org/debian forky/main amd64 python3-matplotlib amd64 3.10.9+dfsg1-2 [22.7 MB] Get:78 http://deb.debian.org/debian forky/main amd64 python3-markupsafe amd64 3.0.3-2+b1 [13.7 kB] Get:79 http://deb.debian.org/debian forky/main amd64 python3-lz4 amd64 4.4.5+dfsg-1+b1 [26.1 kB] Get:80 http://deb.debian.org/debian forky/main amd64 python3-lxml amd64 6.1.3-1 [1527 kB] Get:81 http://deb.debian.org/debian forky/main amd64 python3-kiwisolver amd64 1.5.1-1 [65.4 kB] Get:82 http://deb.debian.org/debian forky/main amd64 python3-fonttools amd64 4.65.0-1 [1513 kB] Get:83 http://deb.debian.org/debian forky/main amd64 python3-datrie amd64 0.8.3-2+b2 [131 kB] Get:84 http://deb.debian.org/debian forky/main amd64 python3-contourpy amd64 1.3.3-2+b1 [228 kB] Get:85 http://deb.debian.org/debian forky/main amd64 python3-charset-normalizer amd64 3.4.7-2+b1 [190 kB] Get:86 http://deb.debian.org/debian forky/main amd64 python3-cairo amd64 1.29.1-1 [111 kB] Get:87 http://deb.debian.org/debian forky/main amd64 python3-brotli amd64 1.2.0-4+b1 [317 kB] Get:88 http://deb.debian.org/debian forky/main amd64 python3-biopython amd64 1.88+dfsg-2+b1 [1619 kB] Get:89 http://deb.debian.org/debian forky/main amd64 python3-humanfriendly all 10.0-7 [84.9 kB] Get:90 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.14.7-3 [25.3 kB] Get:91 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.14.7-3 [26.0 kB] Get:92 http://deb.debian.org/debian forky/main amd64 libyaml-0-2 amd64 0.2.5-2+b1 [53.8 kB] Get:93 http://deb.debian.org/debian forky/main amd64 debconf all 1.5.92 [123 kB] Get:94 http://deb.debian.org/debian forky/main amd64 tzdata all 2026e-1 [262 kB] Get:95 http://deb.debian.org/debian forky/main amd64 libtcl8.6 amd64 8.6.18+dfsg-1 [1053 kB] Get:96 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-mono all 2.37-9 [488 kB] Get:97 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-core all 2.37-9 [840 kB] Get:98 http://deb.debian.org/debian forky/main amd64 fonts-urw-base35 all 20200910-9 [10.8 MB] Get:99 http://deb.debian.org/debian forky/main amd64 fontconfig-config amd64 2.17.1-5 [56.1 kB] Get:100 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.2.0-4+b1 [312 kB] Get:101 http://deb.debian.org/debian forky/main amd64 libpng16-16t64 amd64 1.6.59-1 [293 kB] Get:102 http://deb.debian.org/debian forky/main amd64 libfreetype6 amd64 2.14.3+dfsg-3 [510 kB] Get:103 http://deb.debian.org/debian forky/main amd64 libfontconfig1 amd64 2.17.1-5 [132 kB] Get:104 http://deb.debian.org/debian forky/main amd64 libxau6 amd64 1:1.0.11-1+b2 [20.7 kB] Get:105 http://deb.debian.org/debian forky/main amd64 libxdmcp6 amd64 1:1.1.5-2+b1 [28.2 kB] Get:106 http://deb.debian.org/debian forky/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB] Get:107 http://deb.debian.org/debian forky/main amd64 libx11-data all 2:1.8.13-1 [346 kB] Get:108 http://deb.debian.org/debian forky/main amd64 libx11-6 amd64 2:1.8.13-1 [829 kB] Get:109 http://deb.debian.org/debian forky/main amd64 libxrender1 amd64 1:0.9.12-1+b2 [27.7 kB] Get:110 http://deb.debian.org/debian forky/main amd64 libxft2 amd64 2.3.6-1+b5 [54.8 kB] Get:111 http://deb.debian.org/debian forky/main amd64 libxext6 amd64 2:1.3.4-1+b4 [50.7 kB] Get:112 http://deb.debian.org/debian forky/main amd64 x11-common all 1:7.7+26 [217 kB] Get:113 http://deb.debian.org/debian forky/main amd64 libxss1 amd64 1:1.2.3-1+b4 [17.0 kB] Get:114 http://deb.debian.org/debian forky/main amd64 libtk8.6 amd64 8.6.18-1 [801 kB] Get:115 http://deb.debian.org/debian forky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-10 [625 kB] Get:116 http://deb.debian.org/debian forky/main amd64 media-types all 14.0.0 [30.8 kB] Get:117 http://deb.debian.org/debian forky/main amd64 netbase all 6.6 [10.3 kB] Get:118 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.8.0-2 [32.5 kB] Get:119 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-4 [74.8 kB] Get:120 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:121 http://deb.debian.org/debian forky/main amd64 libsqlite3-0 amd64 3.53.4-2 [974 kB] Get:122 http://deb.debian.org/debian forky/main amd64 libpython3.14-stdlib amd64 3.14.8-1 [2367 kB] Get:123 http://deb.debian.org/debian forky/main amd64 python3.14 amd64 3.14.8-1 [874 kB] Get:124 http://deb.debian.org/debian forky/main amd64 python3.14-tk amd64 3.14.8-1 [108 kB] Get:125 http://deb.debian.org/debian forky/main amd64 python3-decorator all 5.3.1-1 [33.3 kB] Get:126 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-8 [206 kB] Get:127 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 16.2.0-3 [879 kB] Get:128 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-8 [2548 kB] Get:129 http://deb.debian.org/debian forky/main amd64 libqhull-r8.0 amd64 2020.2-9 [248 kB] Get:130 http://deb.debian.org/debian forky/main amd64 libaom3 amd64 3.14.1-1 [1923 kB] Get:131 http://deb.debian.org/debian forky/main amd64 libdav1d7 amd64 1.5.4-1 [583 kB] Get:132 http://deb.debian.org/debian forky/main amd64 libabsl20260526 amd64 20260526.0-2+b1 [584 kB] Get:133 http://deb.debian.org/debian forky/main amd64 libgav1-2 amd64 0.20.0-2+b2 [372 kB] Get:134 http://deb.debian.org/debian forky/main amd64 librav1e0.8 amd64 0.8.1-12 [970 kB] Get:135 http://deb.debian.org/debian forky/main amd64 libsvtav1enc4 amd64 4.2.0+dfsg-1 [2492 kB] Get:136 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo amd64 1:3.1.3-4 [213 kB] Get:137 http://deb.debian.org/debian forky/main amd64 libyuv0 amd64 0.0.1974.20261008-1 [195 kB] Get:138 http://deb.debian.org/debian forky/main amd64 libavif16 amd64 1.4.2-1 [147 kB] Get:139 http://deb.debian.org/debian forky/main amd64 libimagequant0 amd64 4.4.1-1+b2 [255 kB] Get:140 http://deb.debian.org/debian forky/main amd64 liblcms2-2 amd64 2.19.1-1 [164 kB] Get:141 http://deb.debian.org/debian forky/main amd64 libopenjp2-7 amd64 2.5.4-1.1 [205 kB] Get:142 http://deb.debian.org/debian forky/main amd64 libfribidi0 amd64 1.0.16-5+b1 [26.2 kB] Get:143 http://deb.debian.org/debian forky/main amd64 libatomic1 amd64 16.2.0-3 [10.4 kB] Get:144 http://deb.debian.org/debian forky/main amd64 libglib2.0-0t64 amd64 2.90.1-2 [1620 kB] Get:145 http://deb.debian.org/debian forky/main amd64 libgraphite2-3 amd64 1.3.15-2 [75.8 kB] Get:146 http://deb.debian.org/debian forky/main amd64 libharfbuzz0b amd64 12.3.2-2+b2 [513 kB] Get:147 http://deb.debian.org/debian forky/main amd64 libraqm0 amd64 0.10.5-1 [13.6 kB] Get:148 http://deb.debian.org/debian forky/main amd64 libdeflate0 amd64 1.25-1 [48.0 kB] Get:149 http://deb.debian.org/debian forky/main amd64 libjbig0 amd64 2.1-6.1+b3 [32.2 kB] Get:150 http://deb.debian.org/debian forky/main amd64 liblerc4 amd64 4.2.0+ds-1 [203 kB] Get:151 http://deb.debian.org/debian forky/main amd64 libsharpyuv0 amd64 1.6.0-0.1 [116 kB] Get:152 http://deb.debian.org/debian forky/main amd64 libwebp7 amd64 1.6.0-0.1 [349 kB] Get:153 http://deb.debian.org/debian forky/main amd64 libtiff6 amd64 4.7.2-1 [383 kB] Get:154 http://deb.debian.org/debian forky/main amd64 libwebpdemux2 amd64 1.6.0-0.1 [114 kB] Get:155 http://deb.debian.org/debian forky/main amd64 libwebpmux3 amd64 1.6.0-0.1 [127 kB] Get:156 http://deb.debian.org/debian forky/main amd64 fonts-lyx all 2.5.3-2 [190 kB] Get:157 http://deb.debian.org/debian forky/main amd64 python-matplotlib-data all 3.10.9+dfsg1-2 [2734 kB] Get:158 http://deb.debian.org/debian forky/main amd64 python3-dateutil all 2.9.0-5 [78.7 kB] Get:159 http://deb.debian.org/debian forky/main amd64 python3-pyparsing all 3.3.2-2 [165 kB] Get:160 http://deb.debian.org/debian forky/main amd64 python3-cycler all 0.12.1-3 [9112 B] Get:161 http://deb.debian.org/debian forky/main amd64 python3-packaging all 26.2-3 [84.3 kB] Get:162 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.15.4+dfsg-1 [683 kB] Get:163 http://deb.debian.org/debian forky/main amd64 libgpg-error0 amd64 1.61-5 [93.1 kB] Get:164 http://deb.debian.org/debian forky/main amd64 libgcrypt20 amd64 1.12.4-2 [936 kB] Get:165 http://deb.debian.org/debian forky/main amd64 libxslt1.1 amd64 1.1.45-0.1 [158 kB] Get:166 http://deb.debian.org/debian forky/main amd64 libdatrie1 amd64 0.2.14-2 [39.1 kB] Get:167 http://deb.debian.org/debian forky/main amd64 libpixman-1-0 amd64 0.46.4-1+b2 [259 kB] Get:168 http://deb.debian.org/debian forky/main amd64 libxcb-render0 amd64 1.17.0-2+b2 [115 kB] Get:169 http://deb.debian.org/debian forky/main amd64 libxcb-shm0 amd64 1.17.0-2+b2 [105 kB] Get:170 http://deb.debian.org/debian forky/main amd64 libcairo2 amd64 1.18.4-3+b1 [543 kB] Get:171 http://deb.debian.org/debian forky/main amd64 python3-freetype all 2.5.1-3 [88.9 kB] Get:172 http://deb.debian.org/debian forky/main amd64 python3-rlpycairo all 0.3.0-4 [10.1 kB] Get:173 http://deb.debian.org/debian forky/main amd64 libharfbuzz-subset0 amd64 12.3.2-2+b2 [574 kB] Get:174 http://deb.debian.org/debian forky/main amd64 python3-uharfbuzz amd64 0.53.3-1+b1 [219 kB] Get:175 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-extra all 2.37-9 [1791 kB] Get:176 http://deb.debian.org/debian forky/main amd64 python3-reportlab all 5.0.0-4 [823 kB] Get:177 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.14.7-3 [8252 B] Get:178 http://deb.debian.org/debian forky/main amd64 python3-mpmath all 1.4.1-4 [448 kB] Get:179 http://deb.debian.org/debian forky/main amd64 python3-sympy all 1.14.0-6 [4226 kB] Get:180 http://deb.debian.org/debian forky/main amd64 python3-attr all 26.1.0-1 [72.2 kB] Get:181 http://deb.debian.org/debian forky/main amd64 python3-ufolib2 all 0.18.1+dfsg1-2 [32.3 kB] Get:182 http://deb.debian.org/debian forky/main amd64 unicode-data all 17.0.0-2 [9354 kB] Get:183 http://deb.debian.org/debian forky/main amd64 libpam-runtime all 1.7.0-8 [246 kB] Get:184 http://deb.debian.org/debian forky/main amd64 libaudit-common all 1:4.1.2-1 [14.3 kB] Get:185 http://deb.debian.org/debian forky/main amd64 libcap-ng0 amd64 0.9.6-1 [19.0 kB] Get:186 http://deb.debian.org/debian forky/main amd64 libaudit1 amd64 1:4.1.2-1+b2 [59.1 kB] Get:187 http://deb.debian.org/debian forky/main amd64 libpam0g amd64 1.7.0-8 [66.9 kB] Get:188 http://deb.debian.org/debian forky/main amd64 libpam-modules-bin amd64 1.7.0-8 [46.3 kB] Get:189 http://deb.debian.org/debian forky/main amd64 libpam-modules amd64 1.7.0-8 [168 kB] Get:190 http://deb.debian.org/debian forky/main amd64 login amd64 1:4.16.0-2+really2.42.4-1 [124 kB] Get:191 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.15-1 [793 kB] Get:192 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.15-1 [2037 kB] Get:193 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.15-1 [2550 kB] Get:194 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.15-1 [868 kB] Get:195 http://deb.debian.org/debian forky/main amd64 libacl1 amd64 2.4.0-1 [37.1 kB] Get:196 http://deb.debian.org/debian forky/main amd64 libattr1 amd64 1:2.6.0-1 [24.7 kB] Get:197 http://deb.debian.org/debian forky/main amd64 libcap2 amd64 1:2.78-1+b1 [28.8 kB] Get:198 http://deb.debian.org/debian forky/main amd64 liblastlog2-2 amd64 2.42.4-1 [25.0 kB] Get:199 http://deb.debian.org/debian forky/main amd64 libmd0 amd64 1.3.0-1 [45.4 kB] Get:200 http://deb.debian.org/debian forky/main amd64 login.defs all 1:4.20.3-1 [224 kB] Get:201 http://deb.debian.org/debian forky/main amd64 mawk amd64 1.3.4.20260302-2 [145 kB] Get:202 http://deb.debian.org/debian forky/main amd64 libbsd0 amd64 0.12.2-3 [132 kB] Get:203 http://deb.debian.org/debian forky/main amd64 libsemanage-common all 3.11-1 [7148 B] Get:204 http://deb.debian.org/debian forky/main amd64 libsepol2 amd64 3.11-1 [307 kB] Get:205 http://deb.debian.org/debian forky/main amd64 libsemanage2 amd64 3.11-1+b1 [97.0 kB] Get:206 http://deb.debian.org/debian forky/main amd64 passwd amd64 1:4.20.3-1 [1298 kB] Get:207 http://deb.debian.org/debian forky/main amd64 libproc2-1 amd64 2:4.0.7-1 [73.0 kB] Get:208 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.7-1 [989 kB] Get:209 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:210 http://deb.debian.org/debian forky/main amd64 openssl amd64 3.6.5-1 [1554 kB] Get:211 http://deb.debian.org/debian forky/main amd64 ca-certificates all 20260816+nmu1 [134 kB] Get:212 http://deb.debian.org/debian forky/main amd64 libtext-wrapi18n-perl all 0.06-11 [7788 B] Get:213 http://deb.debian.org/debian forky/main amd64 ucf all 3.0056 [47.1 kB] Get:214 http://deb.debian.org/debian forky/main amd64 coinor-libcoinutils3v5 amd64 2.11.12+ds-1+b2 [474 kB] Get:215 http://deb.debian.org/debian forky/main amd64 coinor-libosi1v5 amd64 0.108.11+ds-1+b2 [298 kB] Get:216 http://deb.debian.org/debian forky/main amd64 coinor-libclp1 amd64 1.17.10+ds-1+b2 [904 kB] Get:217 http://deb.debian.org/debian forky/main amd64 coinor-libcgl1 amd64 0.60.10+ds-1 [453 kB] Get:218 http://deb.debian.org/debian forky/main amd64 coinor-libcbc3.1 amd64 2.10.13+ds-1 [724 kB] Get:219 http://deb.debian.org/debian forky/main amd64 coinor-cbc amd64 2.10.13+ds-1 [15.3 kB] Get:220 http://deb.debian.org/debian forky/main amd64 python3-roman-numerals all 4.1.0-1 [9196 B] Get:221 http://deb.debian.org/debian forky/main amd64 python3-docutils all 0.23+dfsg-2 [433 kB] Get:222 http://deb.debian.org/debian forky/main amd64 xml-core all 0.21 [19.0 kB] Get:223 http://deb.debian.org/debian forky/main amd64 docutils-common all 0.23+dfsg-2 [124 kB] Get:224 http://deb.debian.org/debian forky/main amd64 fontconfig amd64 2.17.1-5 [191 kB] Get:225 http://deb.debian.org/debian forky/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-7 [163 kB] Get:226 http://deb.debian.org/debian forky/main amd64 libgomp1 amd64 16.2.0-3 [151 kB] Get:227 http://deb.debian.org/debian forky/main amd64 gcc-14-base amd64 14.4.0-3 [35.5 kB] Get:228 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.17.0-1 [68.1 kB] Get:229 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.24.0-1 [145 kB] Get:230 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:231 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-5 [109 kB] Get:232 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.26.5-1 [482 kB] Get:233 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.21.0-2+b1 [49.3 kB] Get:234 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.13-1 [1546 kB] Get:235 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.22.1-3 [137 kB] Get:236 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.22.1-3 [335 kB] Get:237 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.22.1-3 [31.1 kB] Get:238 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.22.1-3 [79.0 kB] Get:239 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.4-1+b2 [19.5 kB] Get:240 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:241 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-12 [18.4 kB] Get:242 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-12 [59.4 kB] Get:243 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.14+dfsg-2 [200 kB] Get:244 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.70.0-1 [92.7 kB] Get:245 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-gnutls8 amd64 1.24.0-1 [23.9 kB] Get:246 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.23.3-1 [61.7 kB] Get:247 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-6 [253 kB] Get:248 http://deb.debian.org/debian forky/main amd64 libcurl3t64-gnutls amd64 8.22.0-1 [17.8 kB] Get:249 http://deb.debian.org/debian forky/main amd64 libcurl4-gnutls amd64 8.22.0-1 [457 kB] Get:250 http://deb.debian.org/debian forky/main amd64 git amd64 1:2.53.0-1 [9410 kB] Get:251 http://deb.debian.org/debian forky/main amd64 git-man all 1:2.53.0-1 [2326 kB] Get:252 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl0 amd64 1.24.0-1 [26.5 kB] Get:253 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.22.0-1 [462 kB] Get:254 http://deb.debian.org/debian forky/main amd64 libfontenc1 amd64 1:1.1.8-1+b3 [23.4 kB] Get:255 http://deb.debian.org/debian forky/main amd64 libice6 amd64 2:1.1.1-1+b2 [66.8 kB] Get:256 http://deb.debian.org/debian forky/main amd64 libicu78 amd64 78.3-2 [10.0 MB] Get:257 http://deb.debian.org/debian forky/main amd64 libjs-bootstrap all 3.4.1+dfsg-7 [173 kB] Get:258 http://deb.debian.org/debian forky/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get:259 http://deb.debian.org/debian forky/main amd64 libjs-jquery-ui all 1.14.2+dfsg-1 [245 kB] Get:260 http://deb.debian.org/debian forky/main amd64 libpangocairo-1.0-0 amd64 1.58.2-1 [35.3 kB] Get:261 http://deb.debian.org/debian forky/main amd64 libpangoft2-1.0-0 amd64 1.58.2-1 [56.0 kB] Get:262 http://deb.debian.org/debian forky/main amd64 libthai-data all 0.1.30-3 [172 kB] Get:263 http://deb.debian.org/debian forky/main amd64 libthai0 amd64 0.1.30-3 [51.7 kB] Get:264 http://deb.debian.org/debian forky/main amd64 libpango-1.0-0 amd64 1.58.2-1 [233 kB] Get:265 http://deb.debian.org/debian forky/main amd64 libpaper2 amd64 2.2.5-0.4 [16.6 kB] Get:266 http://deb.debian.org/debian forky/main amd64 libpaper-utils amd64 2.2.5-0.4 [15.8 kB] Get:267 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.6-1 [60.3 kB] Get:268 http://deb.debian.org/debian forky/main amd64 libsm6 amd64 2:1.2.6-1+b2 [37.9 kB] Get:269 http://deb.debian.org/debian forky/main amd64 libtirpc-common all 1.3.7+ds-1 [10.0 kB] Get:270 http://deb.debian.org/debian forky/main amd64 libtirpc3t64 amd64 1.3.7+ds-1 [82.9 kB] Get:271 http://deb.debian.org/debian forky/main amd64 libxt6t64 amd64 1:1.2.1-1.3+b2 [191 kB] Get:272 http://deb.debian.org/debian forky/main amd64 r-cran-data.table amd64 1.18.6.1+dfsg-1 [2351 kB] Get:273 http://deb.debian.org/debian forky/main amd64 r-cran-cli amd64 3.6.6-1 [1391 kB] Get:274 http://deb.debian.org/debian forky/main amd64 r-cran-glue amd64 1.8.1-2 [172 kB] Get:275 http://deb.debian.org/debian forky/main amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] Get:276 http://deb.debian.org/debian forky/main amd64 r-cran-vctrs amd64 0.7.3-2 [1983 kB] Get:277 http://deb.debian.org/debian forky/main amd64 r-cran-rlang amd64 1.3.0-1 [1742 kB] Get:278 http://deb.debian.org/debian forky/main amd64 r-base-core amd64 4.6.1-9 [28.4 MB] Get:279 http://deb.debian.org/debian forky/main amd64 zip amd64 3.0-16 [239 kB] Get:280 http://deb.debian.org/debian forky/main amd64 unzip amd64 6.0-31 [176 kB] Get:281 http://deb.debian.org/debian forky/main amd64 r-cran-littler amd64 0.3.23-1 [96.5 kB] Get:282 http://deb.debian.org/debian forky/main amd64 littler all 0.3.23-1 [17.2 kB] Get:283 http://deb.debian.org/debian forky/main amd64 python3-autocommand all 2.2.2-4 [13.7 kB] Get:284 http://deb.debian.org/debian forky/main amd64 python3-certifi all 2026.7.22+ds-1 [9928 B] Get:285 http://deb.debian.org/debian forky/main amd64 python3-configargparse all 1.7-4 [31.3 kB] Get:286 http://deb.debian.org/debian forky/main amd64 python3-dpath all 2.2.0-2 [20.1 kB] Get:287 http://deb.debian.org/debian forky/main amd64 python3-fastjsonschema all 2.22.1-1 [24.0 kB] Get:288 http://deb.debian.org/debian forky/main amd64 python3-smmap all 6.0.0-2 [20.1 kB] Get:289 http://deb.debian.org/debian forky/main amd64 python3-gitdb all 4.0.12-2 [45.5 kB] Get:290 http://deb.debian.org/debian forky/main amd64 python3-git all 3.1.62-3 [157 kB] Get:291 http://deb.debian.org/debian forky/main amd64 python3-idna all 3.20-1 [45.8 kB] Get:292 http://deb.debian.org/debian forky/main amd64 python3-more-itertools all 11.1.0-3 [74.7 kB] Get:293 http://deb.debian.org/debian forky/main amd64 python3-typing-extensions all 4.16.0-5 [95.2 kB] Get:294 http://deb.debian.org/debian forky/main amd64 python3-typeguard all 4.4.4-3 [37.1 kB] Get:295 http://deb.debian.org/debian forky/main amd64 python3-inflect all 7.5.0-2 [32.8 kB] Get:296 http://deb.debian.org/debian forky/main amd64 python3-jaraco.context all 6.0.1-2 [8184 B] Get:297 http://deb.debian.org/debian forky/main amd64 python3-jinja2 all 3.1.6-4 [106 kB] Get:298 http://deb.debian.org/debian forky/main amd64 python3-referencing all 0.37.0+~2025.1.1-3 [24.1 kB] Get:299 http://deb.debian.org/debian forky/main amd64 python3-jsonschema-specifications all 2025.9.1-1 [9112 B] Get:300 http://deb.debian.org/debian forky/main amd64 python3-jsonschema all 4.26.0-3 [74.6 kB] Get:301 http://deb.debian.org/debian forky/main amd64 python3-platformdirs all 4.10.0-1 [18.3 kB] Get:302 http://deb.debian.org/debian forky/main amd64 python3-traitlets all 5.16.1-1 [71.4 kB] Get:303 http://deb.debian.org/debian forky/main amd64 python3-jupyter-core all 5.9.1-1 [36.5 kB] Get:304 http://deb.debian.org/debian forky/main amd64 python3-nbformat all 5.10.4-3 [43.0 kB] Get:305 http://deb.debian.org/debian forky/main amd64 python3-plac all 1.4.5-3 [87.0 kB] Get:306 http://deb.debian.org/debian forky/main amd64 python3-psutil amd64 7.1.0-1 [224 kB] Get:307 http://deb.debian.org/debian forky/main amd64 python3-pulp all 2.7.0+dfsg-5 [71.7 kB] Get:308 http://deb.debian.org/debian forky/main amd64 python3-urllib3 all 2.8.0-2 [125 kB] Get:309 http://deb.debian.org/debian forky/main amd64 python3-requests all 2.34.2-1 [77.6 kB] Get:310 http://deb.debian.org/debian forky/main amd64 python3-retry all 0.9.2-5 [7256 B] Get:311 http://deb.debian.org/debian forky/main amd64 python3-roman all 5.2-1 [11.2 kB] Get:312 http://deb.debian.org/debian forky/main amd64 python3-smart-open all 7.5.1-2 [67.8 kB] Get:313 http://deb.debian.org/debian forky/main amd64 python3-stopit all 1.1.2-4 [13.0 kB] Get:314 http://deb.debian.org/debian forky/main amd64 python3-tabulate all 0.10.0-1 [51.2 kB] Get:315 http://deb.debian.org/debian forky/main amd64 python3-throttler all 1.2.3-1 [8600 B] Get:316 http://deb.debian.org/debian forky/main amd64 r-cran-generics all 0.1.4-1 [84.2 kB] Get:317 http://deb.debian.org/debian forky/main amd64 r-pkg-team-core-architecture amd64 20260707 [4764 B] Get:318 http://deb.debian.org/debian forky/main amd64 r-bioc-biocgenerics all 0.58.1-2 [649 kB] Get:319 http://deb.debian.org/debian forky/main amd64 r-cran-gtable all 0.3.6+dfsg-2 [228 kB] Get:320 http://deb.debian.org/debian forky/main amd64 r-cran-cpp11 all 0.5.5-1 [236 kB] Get:321 http://deb.debian.org/debian forky/main amd64 r-cran-isoband amd64 0.3.0-1 [1644 kB] Get:322 http://deb.debian.org/debian forky/main amd64 r-cran-s7 amd64 0.2.2-1 [331 kB] Get:323 http://deb.debian.org/debian forky/main amd64 r-cran-farver amd64 2.1.2-3 [1414 kB] Get:324 http://deb.debian.org/debian forky/main amd64 r-cran-labeling all 0.4.3-2 [63.2 kB] Get:325 http://deb.debian.org/debian forky/main amd64 r-cran-r6 all 2.6.1-2 [106 kB] Get:326 http://deb.debian.org/debian forky/main amd64 r-cran-rcolorbrewer all 1.1-3-2 [54.0 kB] Get:327 http://deb.debian.org/debian forky/main amd64 r-cran-viridislite all 0.4.3-1 [1299 kB] Get:328 http://deb.debian.org/debian forky/main amd64 r-cran-scales all 1.4.0-1 [800 kB] Get:329 http://deb.debian.org/debian forky/main amd64 r-cran-withr all 3.0.3+dfsg-1 [229 kB] Get:330 http://deb.debian.org/debian forky/main amd64 r-cran-ggplot2 all 4.0.3+dfsg-1 [4923 kB] Get:331 http://deb.debian.org/debian forky/main amd64 r-cran-lattice amd64 0.23-1-1 [1457 kB] Get:332 http://deb.debian.org/debian forky/main amd64 r-cran-mass amd64 7.3-66-1 [1113 kB] Get:333 http://deb.debian.org/debian forky/main amd64 r-cran-class amd64 7.3-24-1 [89.1 kB] Get:334 http://deb.debian.org/debian forky/main amd64 r-cran-proxy amd64 0.4-29-1 [181 kB] Get:335 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[452 kB] Get:346 http://deb.debian.org/debian forky/main amd64 r-cran-tidyselect amd64 1.2.1+dfsg-3 [224 kB] Get:347 http://deb.debian.org/debian forky/main amd64 r-cran-dplyr amd64 1.2.1-2 [1574 kB] Get:348 http://deb.debian.org/debian forky/main amd64 r-cran-clock amd64 0.7.4-2 [1835 kB] Get:349 http://deb.debian.org/debian forky/main amd64 r-cran-gower amd64 1.0.2-2 [208 kB] Get:350 http://deb.debian.org/debian forky/main amd64 r-cran-sparsevctrs amd64 0.3.6-2 [214 kB] Get:351 http://deb.debian.org/debian forky/main amd64 r-cran-hardhat all 1.4.3+dfsg-1 [724 kB] Get:352 http://deb.debian.org/debian forky/main amd64 r-cran-matrix amd64 1.7-6-1 [4192 kB] Get:353 http://deb.debian.org/debian forky/main amd64 r-cran-survival amd64 3.8-12-1 [7862 kB] Get:354 http://deb.debian.org/debian forky/main amd64 r-cran-rpart amd64 4.1.27-1 [689 kB] Get:355 http://deb.debian.org/debian forky/main amd64 r-cran-nnet amd64 7.3-21-1 [113 kB] Get:356 http://deb.debian.org/debian forky/main amd64 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Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-11+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 38423 files and directories currently installed.) Preparing to unpack .../libgdbm6t64_1.26-1+b2_amd64.deb ... Unpacking libgdbm6t64:amd64 (1.26-1+b2) over (1.24-2) ... Preparing to unpack .../libgdbm-compat4t64_1.26-1+b2_amd64.deb ... Unpacking libgdbm-compat4t64:amd64 (1.26-1+b2) over (1.24-2) ... Preparing to unpack .../archives/sed_4.9-3_amd64.deb ... 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Setting up libavif16:amd64 (1.4.2-1) ... Setting up liblapack3:amd64 (3.12.1-8) ... Setting up libxrender1:amd64 (1:0.9.12-1+b2) ... Setting up fontconfig-config (2.17.1-5) ... Setting up libwebpdemux2:amd64 (1.6.0-0.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b4) ... Setting up libidn2-0:amd64 (2.3.8-5) ... Setting up libperl5.42:amd64 (5.42.3-1) ... Setting up libpaper-utils (2.2.5-0.4) ... Setting up coinor-libcoinutils3v5:amd64 (2.11.12+ds-1+b2) ... Setting up libthai0:amd64 (0.1.30-3) ... Setting up ca-certificates (20260816+nmu1) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt, it does not contain exactly one certificate or CRL 10 added, 40 removed; done. Setting up perl (5.42.3-1) ... Setting up libglib2.0-0t64:amd64 (2.90.1-2) ... No schema files found: doing nothing. Setting up libjs-jquery-ui (1.14.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.14.3+dfsg-3) ... Setting up libp11-kit0:amd64 (0.26.5-1) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-3) ... Setting up ucf (3.0056) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Setting up coinor-libosi1v5:amd64 (0.108.11+ds-1+b2) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up passwd (1:4.20.3-1) ... Setting up libharfbuzz0b:amd64 (12.3.2-2+b2) ... Setting up libxss1:amd64 (1:1.2.3-1+b4) ... Setting up libsm6:amd64 (2:1.2.6-1+b2) ... Setting up libpython3.13-stdlib:amd64 (3.13.15-1) ... Setting up libgnutls30t64:amd64 (3.8.13-1) ... Setting up libtirpc3t64:amd64 (1.3.7+ds-1) ... Setting up python3.13 (3.13.15-1) ... Setting up libpython3.14-stdlib:amd64 (3.14.8-1) ... Setting up libpsl5t64:amd64 (0.23.3-1) ... Setting up librtmp1:amd64 (2.6-1) ... Setting up coinor-libclp1:amd64 (1.17.10+ds-1+b2) ... Setting up libraqm0:amd64 (0.10.5-1) ... Setting up libxt6t64:amd64 (1:1.2.1-1.3+b2) ... Setting up libharfbuzz-subset0:amd64 (12.3.2-2+b2) ... Setting up coinor-libcgl1:amd64 (0.60.10+ds-1) ... Setting up python3.14 (3.14.8-1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.24.0-1) ... Setting up libpython3-stdlib:amd64 (3.14.7-3) ... Setting up libcurl4-gnutls:amd64 (8.22.0-1) ... Setting up libcurl4t64:amd64 (8.22.0-1) ... Setting up libcurl3t64-gnutls:amd64 (8.22.0-1) ... Setting up python3 (3.14.7-3) ... Setting up python3-freetype (2.5.1-3) ... Setting up python3-autocommand (2.2.2-4) ... Setting up python3-markupsafe (3.0.3-2+b1) ... Setting up python3-plac (1.4.5-3) ... Setting up python3-platformdirs (4.10.0-1) ... Setting up python3-psutil (7.1.0-1) ... Setting up python3-zopfli (0.4.3-2) ... Setting up python3-pil:amd64 (12.3.0-1+b1) ... Setting up python3-roman (5.2-1) ... Setting up python3-decorator (5.3.1-1) ... Setting up python3-jinja2 (3.1.6-4) ... Setting up python3-packaging (26.2-3) ... Setting up python3-pyparsing (3.3.2-2) ... Setting up python3-humanfriendly (10.0-7) ... /usr/lib/python3/dist-packages/humanfriendly/testing.py:546: SyntaxWarning: 'return' in a 'finally' block return super(MockedProgram, self).__exit__(*args, **kw) Setting up python3-certifi (2026.7.22+ds-1) ... Setting up python3-brotli (1.2.0-4+b1) ... Setting up python3-cycler (0.12.1-3) ... Setting up python3-dpath (2.2.0-2) ... Setting up python3-kiwisolver (1.5.1-1) ... Setting up python3-idna (3.20-1) ... Setting up python3-wrapt (2.3.0-1) ... Setting up python3-throttler (1.2.3-1) ... Setting up coinor-libcbc3.1:amd64 (2.10.13+ds-1) ... Setting up python3-uharfbuzz (0.53.3-1+b1) ... Setting up python3-typing-extensions (4.16.0-5) ... Setting up python3-retry (0.9.2-5) ... Setting up git (1:2.53.0-1) ... Setting up python3-numpy (1:2.4.6+ds-4+b1) ... Setting up python3-urllib3 (2.8.0-2) ... Setting up python3-rpds-py (0.30.0-2+b1) ... Setting up python3-fastjsonschema (2.22.1-1) ... Setting up python3-stopit (1.1.2-4) ... Setting up python3-lxml:amd64 (6.1.3-1) ... Setting up python3-traitlets (5.16.1-1) ... Setting up python3-roman-numerals (4.1.0-1) ... Setting up python3-dateutil (2.9.0-5) ... Setting up python3-contourpy (1.3.3-2+b1) ... Setting up python3-datrie (0.8.3-2+b2) ... Setting up python3-mpmath (1.4.1-4) ... Setting up python3-smmap (6.0.0-2) ... Setting up python3-jupyter-core (5.9.1-1) ... Setting up python3-more-itertools (11.1.0-3) ... Setting up python3-configargparse (1.7-4) ... Setting up python3-sympy (1.14.0-6) ... Setting up python3-attr (26.1.0-1) ... Setting up python3-scipy (1.17.1-5+b1) ... Setting up python3-smart-open (7.5.1-2) ... Setting up python3-jaraco.context (6.0.1-2) ... Setting up python3-lz4 (4.4.5+dfsg-1+b1) ... Setting up python3-charset-normalizer (3.4.7-2+b1) ... Setting up python3-unicodedata2 (17.0.1+ds-1+b1) ... Setting up python3-typeguard (4.4.4-3) ... Setting up python3-tabulate (0.10.0-1) ... Setting up python3-yaml (6.0.3-1+b1) ... Setting up python3-gitdb (4.0.12-2) ... Setting up python3-inflect (7.5.0-2) ... Setting up coinor-cbc (2.10.13+ds-1) ... Setting up python3-git (3.1.62-3) ... Setting up python3-requests (2.34.2-1) ... Setting up python3-referencing (0.37.0+~2025.1.1-3) ... Setting up python3-pulp (2.7.0+dfsg-5) ... Setting up python3-jsonschema-specifications (2025.9.1-1) ... Setting up python3-jsonschema (4.26.0-3) ... Setting up python3-nbformat (5.10.4-3) ... Setting up python3-fonttools (4.65.0-1) ... Setting up python3-ufolib2 (0.18.1+dfsg1-2) ... Processing triggers for sgml-base (1.31+nmu1) ... Processing triggers for debianutils (5.24) ... Setting up libfontconfig1:amd64 (2.17.1-5) ... Setting up fontconfig (2.17.1-5) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1+b5) ... Setting up libtk8.6:amd64 (8.6.18-1) ... Processing triggers for libc-bin (2.43-7) ... Setting up libpango-1.0-0:amd64 (1.58.2-1) ... Setting up libcairo2:amd64 (1.18.4-3+b1) ... Setting up python3.13-tk (3.13.15-1) ... Setting up docutils-common (0.23+dfsg-2) ... Setting up libpangoft2-1.0-0:amd64 (1.58.2-1) ... Setting up libpangocairo-1.0-0:amd64 (1.58.2-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-10) ... Setting up python3.14-tk (3.14.8-1) ... Setting up python3-cairo (1.29.1-1) ... Setting up blt (2.5.3+dfsg-10) ... Setting up python3-tk (3.14.7-3) ... Setting up python3-pil.imagetk:amd64 (12.3.0-1+b1) ... Setting up python3-rlpycairo (0.3.0-4) ... Setting up r-base-core (4.6.1-9) ... Installing new version of config file /etc/R/Makeconf ... Installing new version of config file /etc/R/Renviron.site ... Replacing config file /etc/R/Renviron with new version Setting up r-cran-squarem (2026.1-1) ... Setting up r-cran-labeling (0.4.3-2) ... Setting up r-cran-lattice (0.23-1-1) ... Setting up r-cran-nlme (3.1.171-1) ... Setting up r-cran-farver (2.1.2-3) ... Setting up python3-reportlab (5.0.0-4) ... Setting up r-cran-xml (3.99-0.25-1) ... Setting up r-cran-viridislite (0.4.3-1) ... Setting up r-cran-nnet (7.3-21-1) ... Setting up r-cran-proxy (0.4-29-1) ... Setting up r-cran-r6 (2.6.1-2) ... Setting up python3-biopython (1.88+dfsg-2+b1) ... Setting up r-cran-globals (0.19.1-2) ... Setting up r-cran-magrittr (2.0.5-1) ... Setting up r-cran-littler (0.3.23-1) ... Setting up r-cran-rcpp (1.1.2-1) ... Setting up python3-matplotlib (3.10.9+dfsg1-2) ... Setting up r-cran-rlang (1.3.0-1) ... Setting up r-cran-matrixstats (1.5.0-3) ... Setting up r-cran-listenv (1.0.0+dfsg-1) ... Setting up littler (0.3.23-1) ... Setting up r-cran-withr (3.0.3+dfsg-1) ... Setting up r-cran-generics (0.1.4-1) ... Setting up r-cran-digest (0.6.39-1) ... Setting up r-cran-gower (1.0.2-2) ... Setting up r-cran-timedate (4052.112-2) ... Setting up r-cran-fansi (1.0.7-2) ... Setting up r-cran-mass (7.3-66-1) ... Setting up r-cran-proc (1.19.1-1) ... Setting up r-cran-data.table (1.18.6.1+dfsg-1) ... Setting up r-cran-glue (1.8.1-2) ... Setting up r-cran-cli (3.6.6-1) ... Setting up r-cran-lifecycle (1.0.5+dfsg-1) ... Setting up r-cran-progressr (1.0.0-1) ... Setting up r-cran-shape (1.4.6.1-2) ... Setting up r-cran-pkgconfig (2.0.3-3) ... Setting up r-cran-utf8 (1.2.6-2) ... Setting up r-cran-colorspace (2.1-4+dfsg-1) ... Setting up r-cran-parallelly (1.47.0-1) ... Setting up r-cran-stringi (1.8.9-1) ... Setting up r-cran-s7 (0.2.2-1) ... Setting up r-cran-cpp11 (0.5.5-1) ... Setting up r-cran-plyr (1.8.9-2) ... Setting up r-cran-rcolorbrewer (1.1-3-2) ... Setting up r-cran-isoband (0.3.0-1) ... Setting up r-cran-diagram (1.6.5-3) ... Setting up r-cran-scales (1.4.0-1) ... Setting up r-cran-gtable (0.3.6+dfsg-2) ... Setting up r-cran-matrix (1.7-6-1) ... Setting up r-cran-kernsmooth (2.23-27-1) ... Setting up r-cran-mgcv (1.9-4-1) ... Setting up r-cran-rcpparmadillo (15.6.0-1-1) ... Setting up r-cran-vctrs (0.7.3-2) ... Setting up r-cran-pillar (1.11.1+dfsg-1) ... Setting up r-bioc-biocgenerics (0.58.1-2) ... Setting up r-cran-stringr (1.6.0-1) ... Setting up r-cran-class (7.3-24-1) ... Setting up r-cran-modelmetrics (1.2.2.2-2) ... Setting up r-cran-matrixmodels (0.5-4-2) ... Setting up r-cran-ggplot2 (4.0.3+dfsg-1) ... Setting up r-cran-sparsevctrs (0.3.6-2) ... Setting up r-cran-munsell (0.5.1-2) ... Setting up r-cran-tibble (3.3.1+dfsg-2) ... Setting up r-cran-clock (0.7.4-2) ... Setting up r-cran-survival (3.8-12-1) ... Setting up r-cran-future (1.75.0+dfsg-1) ... Setting up r-cran-tidyselect (1.2.1+dfsg-3) ... Setting up r-cran-reshape2 (1.4.5-1) ... Setting up r-cran-future.apply (1.20.2+dfsg-1) ... Setting up r-cran-timechange (0.4.0-1) ... Setting up r-cran-gridextra (2.3.1-1) ... Setting up r-cran-lava (1.9.3+dfsg-1) ... Setting up r-cran-purrr (1.2.2-1) ... Setting up r-cran-e1071 (1.7-17-1) ... Setting up r-cran-hardhat (1.4.3+dfsg-1) ... Setting up r-cran-dplyr (1.2.1-2) ... Setting up r-cran-lubridate (1.9.5+dfsg-2) ... Setting up r-cran-prodlim (2026.03.11-1) ... Setting up r-cran-rpart (4.1.27-1) ... Setting up r-cran-ipred (0.9-16-1) ... Setting up r-cran-tidyr (1.3.2-3) ... Setting up r-cran-recipes (1.3.3+dfsg-2) ... Setting up r-cran-caret (7.0-1+dfsg-2) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up python3-docutils (0.23+dfsg-2) ... Setting up snakemake (7.32.4-12) ... Processing triggers for ca-certificates (20260816+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for libc-bin (2.43-7) ... 3m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-get', '-yf', 'dist-upgrade'] 3m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 3m6.8s DUMP: 4a359b87f9b9fb2d5f4d6c3c9c5b83a4 - 3m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 3m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-cache', 'show', '--no-all-versions', 'qcumber'] 3m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-cache', 'show', '--no-all-versions', 'qcumber'] 3m7.1s INFO: apt-cache does not know about any of the requested packages 3m7.1s INFO: Running scripts post_distupgrade 3m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_distupgrade_base_cleanup'] 3m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_distupgrade_base_cleanup'] 3m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_distupgrade_exceptions'] 3m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_distupgrade_exceptions'] 3m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 3m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 3m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_distupgrade_squeeze-backports'] 3m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_distupgrade_squeeze-backports'] 3m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_distupgrade_zz_backports'] 3m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/post_distupgrade_zz_backports'] 3m7.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc'] 3m9.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc'] 3m9.2s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpr5jbibwc to sid 3m9.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 3m9.2s INFO: Running scripts pre_distupgrade 3m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 3m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 3m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_distupgrade_exceptions'] 3m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_distupgrade_exceptions'] 3m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 3m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 3m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_distupgrade_zz_database-server'] 3m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_distupgrade_zz_database-server'] 3m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 3m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 3m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-get', 'update'] 3m16.3s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.8 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7747 kB] Fetched 18.7 MB in 4s (4378 kB/s) Reading package lists... 3m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-get', 'update'] 3m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-get', '-yf', 'dist-upgrade'] 3m28.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: blt coinor-cbc coinor-libcbc3.1 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-glyphicons-halflings fonts-lyx fonts-urw-base35 git git-man libabsl20260526 libaom3 libatomic1 libavif16 libblas3 libbrotli1 libcairo2 libcom-err2 libcurl3t64-gnutls libcurl4-gnutls libcurl4t64 libdatrie1 libdav1d7 libdeflate0 liberror-perl libexpat1 libffi8 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgav1-2 libgcrypt20 libgfortran5 libglib2.0-0t64 libgnutls30t64 libgomp1 libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz-subset0 libharfbuzz0b libice6 libicu76 libicu78 libimagequant0 libjbig0 libjpeg62-turbo libjs-angularjs libjs-bootstrap libjs-d3 libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap2 liblerc4 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libopenjp2-7 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libperl5.40 libpixman-1-0 libpng16-16t64 libproc2-0 libproc2-1 libpsl5t64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 libraqm0 librav1e0.8 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libssh2-1t64 libsvtav1enc4 libtasn1-6 libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxml2-16 libxrender1 libxslt1.1 libxss1 libxt6t64 libyaml-0-2 libyuv0 libzopfli1 littler media-types perl-modules-5.40 procps python-matplotlib-data python3 python3-attr python3-autocommand python3-biopython python3-brotli python3-cairo python3-certifi python3-chardet python3-charset-normalizer python3-configargparse python3-connection-pool python3-contourpy python3-cycler python3-dateutil python3-datrie python3-decorator python3-docutils python3-dpath python3-fastjsonschema python3-fonttools python3-freetype python3-git python3-gitdb python3-humanfriendly python3-idna python3-inflect python3-jaraco.context python3-jaraco.functools python3-jinja2 python3-jsonschema python3-jsonschema-specifications python3-jupyter-core python3-kiwisolver python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-mpmath python3-nbformat python3-numpy python3-numpy-dev python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-plac python3-platformdirs python3-psutil python3-pulp python3-py python3-pyparsing python3-ratelimiter python3-referencing python3-reportlab python3-requests python3-retry python3-rlpycairo python3-roman python3-roman-numerals python3-rpds-py python3-scipy python3-smart-open python3-smmap python3-stopit python3-sympy python3-tabulate python3-throttler python3-tk python3-toposort python3-traitlets python3-typeguard python3-typing-extensions python3-ufolib2 python3-uharfbuzz python3-unicodedata2 python3-urllib3 python3-wrapt python3-yaml python3-yte python3-zopfli python3.13 python3.13-minimal python3.13-tk python3.14 python3.14-minimal python3.14-tk r-base-core r-bioc-biocgenerics r-cran-caret r-cran-class r-cran-cli r-cran-clock r-cran-codetools r-cran-colorspace r-cran-conquer r-cran-cpp11 r-cran-data.table r-cran-diagram r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-fansi r-cran-farver r-cran-foreach r-cran-future r-cran-future.apply r-cran-generics r-cran-ggplot2 r-cran-globals r-cran-glue r-cran-gower r-cran-gridextra r-cran-gtable r-cran-hardhat r-cran-ipred r-cran-isoband r-cran-iterators r-cran-kernsmooth r-cran-labeling r-cran-lattice r-cran-lava r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lubridate r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixmodels r-cran-matrixstats r-cran-mgcv r-cran-modelmetrics r-cran-munsell r-cran-nlme r-cran-nnet r-cran-numderiv r-cran-parallelly r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-proc r-cran-prodlim r-cran-progressr r-cran-proxy r-cran-purrr r-cran-quantreg r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-recipes r-cran-reshape2 r-cran-rlang r-cran-rpart r-cran-s7 r-cran-scales r-cran-shape r-cran-sparsem r-cran-sparsevctrs r-cran-squarem r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-timechange r-cran-timedate r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xml r-pkg-team-core-architecture readline-common sgml-base snakemake tk8.6-blt2.5 ucf unicode-data unzip w3c-sgml-lib x11-common xdg-utils xfonts-encodings xfonts-utils xml-core zip Use 'sudo apt autoremove' to remove them. The following packages will be upgraded: apt git git-man libapt-pkg7.0 libaudit-common libaudit1 libcurl3t64-gnutls libcurl4-gnutls libcurl4t64 libicu76 libperl5.40 libsvtav1enc4 libsystemd0 libudev1 libxml2 perl-modules-5.40 python3-certifi python3-git python3-more-itertools python3-numpy python3-numpy-dev python3-pil python3-pil.imagetk python3-pkg-resources python3-platformdirs python3-psutil python3-pyparsing python3-rpds-py r-cran-listenv r-cran-rcpparmadillo 30 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 44.9 MB of archives. After this operation, 1349 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 262.1-1 [512 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 262.1-1 [149 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libapt-pkg7.0 amd64 3.3.4 [1286 kB] Get:4 http://deb.debian.org/debian sid/main amd64 apt amd64 3.3.4 [1574 kB] Get:5 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:2.4.6+ds-5 [5139 kB] Get:6 http://deb.debian.org/debian sid/main amd64 python3-numpy-dev amd64 1:2.4.6+ds-5 [137 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:4.2.1-1 [13.3 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.2.1-1 [59.6 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libcurl4-gnutls amd64 8.23.0-1 [463 kB] Get:10 http://deb.debian.org/debian sid/main amd64 git amd64 1:2.55.0-1 [9658 kB] Get:11 http://deb.debian.org/debian sid/main amd64 git-man all 1:2.55.0-1 [2381 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libcurl3t64-gnutls amd64 8.23.0-1 [18.0 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.23.0-1 [469 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libicu76 amd64 76.1-4+b1 [9752 kB] Get:15 http://deb.debian.org/debian sid/main amd64 perl-modules-5.40 all 5.40.1-8 [3019 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libperl5.40 amd64 5.40.1-8 [4344 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libsvtav1enc4 amd64 4.2.0+dfsg-3 [2492 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.4 [709 kB] Get:19 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2026.10.19+ds-1 [9948 B] Get:20 http://deb.debian.org/debian sid/main amd64 python3-git all 3.2.1-1 [164 kB] Get:21 http://deb.debian.org/debian sid/main amd64 python3-more-itertools all 11.2.1-1 [77.9 kB] Get:22 http://deb.debian.org/debian sid/main amd64 python3-pil.imagetk amd64 13.0.0-1 [83.5 kB] Get:23 http://deb.debian.org/debian sid/main amd64 python3-pil amd64 13.0.0-1 [559 kB] Get:24 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 80.9.0-2 [224 kB] Get:25 http://deb.debian.org/debian sid/main amd64 python3-platformdirs all 4.11.9-1 [19.7 kB] Get:26 http://deb.debian.org/debian sid/main amd64 python3-psutil amd64 7.2.2-2 [154 kB] Get:27 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.3.3-2 [168 kB] Get:28 http://deb.debian.org/debian sid/main amd64 python3-rpds-py amd64 0.30.0-3 [248 kB] Get:29 http://deb.debian.org/debian sid/main amd64 r-cran-listenv all 1.1.0+dfsg-1 [128 kB] Get:30 http://deb.debian.org/debian sid/main amd64 r-cran-rcpparmadillo amd64 15.6.2-1-1 [848 kB] Fetched 44.9 MB in 1s (32.1 MB/s) (Reading database ... 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Processing triggers for libc-bin (2.43-7) ... 3m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-get', '-yf', 'dist-upgrade'] 3m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 3m30.2s DUMP: 84d78465909d0b7c15d6e72d9a7aa0b8 - 3m30.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 3m30.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-cache', 'show', '--no-all-versions', 'qcumber'] 3m30.5s DUMP: Package: qcumber Version: 2.3.0-4 Installed-Size: 239 Maintainer: Debian Med Packaging Team Architecture: all Replaces: qc-pipeline Provides: qc-pipeline Depends: libjs-angularjs, libjs-bootstrap, libjs-d3, libjs-jquery, python3-biopython, python3-jinja2, python3-matplotlib, r-base-core, r-bioc-savr, r-cran-ggplot2, r-cran-quantreg, snakemake, debconf (>= 0.5) | debconf-2.0, python3:any Recommends: dwgsim, kraken Conflicts: qc-pipeline Description-en: quality control of genomic sequences QCPipeline is a tool for quality control. The workflow is as follows: . 1. Quality control with FastQC 2. Trim Reads with Trimmomatic 3. Quality control of trimmed reads with FastQC 4. Map reads against reference using bowtie2 5. Classify reads with Kraken Description-md5: 380ba80499911de0a248a18cb1009872 Homepage: https://gitlab.com/RKIBioinformaticsPipelines/QCumber Commands: qcumber Section: science Priority: optional Filename: pool/main/q/qcumber/qcumber_2.3.0-4_all.deb Size: 51644 MD5sum: 10516bff03b206a24d8b0770e479c18d SHA256: 7fa44c299a8c252a776fa27dd6be2494d052810d7317a383e96331d5f00af92e 3m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-cache', 'show', '--no-all-versions', 'qcumber'] 3m30.5s INFO: apt-cache knows about the following packages: qcumber 3m30.5s INFO: Running scripts pre_install 3m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_install_database-server'] 3m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_install_database-server'] 3m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_install_exceptions'] 3m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_install_exceptions'] 3m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_install_extras'] 3m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_install_extras'] 3m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_install_foreign_architecture'] 3m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_install_foreign_architecture'] 3m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m30.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m30.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-cache', 'policy'] 3m30.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 3m30.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-cache', 'policy'] 3m30.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-cache', 'policy', 'qcumber'] 3m30.7s DUMP: qcumber: Installed: (none) Candidate: 2.3.0-4 Version table: 2.3.0-4 500 500 http://deb.debian.org/debian sid/main amd64 Packages 2.3.0-2 -1 100 /var/lib/dpkg/status 3m30.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-cache', 'policy', 'qcumber'] 3m30.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-get', '-y', 'install', 'qcumber'] 3m31.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: qcumber : Depends: r-bioc-savr but it is not installable E: Unable to satisfy dependencies. Reached two conflicting assignments: 1. qcumber:amd64=2.3.0-4 is selected for install 2. qcumber:amd64 Depends r-bioc-savr but none of the choices are installable: [no choices] 3m31.5s ERROR: Command failed (status=100): ['chroot', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc', 'apt-get', '-y', 'install', 'qcumber'] Reading package lists... Building dependency tree... Reading state information... Solving dependencies... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: qcumber : Depends: r-bioc-savr but it is not installable E: Unable to satisfy dependencies. Reached two conflicting assignments: 1. qcumber:amd64=2.3.0-4 is selected for install 2. qcumber:amd64 Depends r-bioc-savr but none of the choices are installable: [no choices] 3m33.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc/dev/shm'] 3m33.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc/dev/shm'] 3m33.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc/dev/console'] 3m33.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc/dev/console'] 3m33.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc/dev/ptmx'] 3m33.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc/dev/ptmx'] 3m33.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc/dev/pts'] 3m33.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc/dev/pts'] 3m33.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc/proc'] 3m33.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc/proc'] 3m33.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc'] 3m34.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpr5jbibwc'] 3m34.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpr5jbibwc 3m34.2s ERROR: piuparts run ends. ret=1 End: 2026-10-22 22:11:23 GMT