Start: 2025-09-05 16:29:39 GMT [stable] Package: emboss Version: 6.6.0+dfsg-15 Installed-Size: 6088 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: emboss-lib (= 6.6.0+dfsg-15), libc6 (>= 2.34), libexpat1 (>= 2.0.1), libx11-6, zlib1g (>= 1:1.1.4), emboss-data (= 6.6.0+dfsg-15) Recommends: primer3, dialign Suggests: emboss-doc, emboss-test, embassy, clustalw Description: European molecular biology open software suite Homepage: https://emboss.sourceforge.net Description-md5: 631f0b40fa19ed8d24d0b67284b2cdaa Tag: field::biology, field::biology:bioinformatics, field::biology:molecular, implemented-in::c, interface::commandline, role::program, scope::suite, scope::utility, use::analysing, use::comparing, use::converting, use::editing, use::organizing, use::searching, use::text-formatting, use::typesetting, use::viewing, works-with-format::TODO, works-with-format::plaintext, works-with::TODO, works-with::db, works-with::text Section: science Priority: optional Filename: pool/main/e/emboss/emboss_6.6.0+dfsg-15_amd64.deb Size: 1072080 MD5sum: 40e3d017b404af0f3373e24306a98e4f SHA256: f2dd4ff8e8f0f5233d1d2be701e06692e6c6df02ccaaed7eef0ff2147d95a0f7 [testing] Package: emboss Version: 6.6.0+dfsg-15 Installed-Size: 6088 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: emboss-lib (= 6.6.0+dfsg-15), libc6 (>= 2.34), libexpat1 (>= 2.0.1), libx11-6, zlib1g (>= 1:1.1.4), emboss-data (= 6.6.0+dfsg-15) Recommends: primer3, dialign Suggests: emboss-doc, emboss-test, embassy, clustalw Description: European molecular biology open software suite Homepage: https://emboss.sourceforge.net Description-md5: 631f0b40fa19ed8d24d0b67284b2cdaa Tag: field::biology, field::biology:bioinformatics, field::biology:molecular, implemented-in::c, interface::commandline, role::program, scope::suite, scope::utility, use::analysing, use::comparing, use::converting, use::editing, use::organizing, use::searching, use::text-formatting, use::typesetting, use::viewing, works-with-format::TODO, works-with-format::plaintext, works-with::TODO, works-with::db, works-with::text Section: science Priority: optional Filename: pool/main/e/emboss/emboss_6.6.0+dfsg-15_amd64.deb Size: 1072080 MD5sum: 40e3d017b404af0f3373e24306a98e4f SHA256: f2dd4ff8e8f0f5233d1d2be701e06692e6c6df02ccaaed7eef0ff2147d95a0f7 [sid] Package: emboss Version: 6.6.0+dfsg-16 Installed-Size: 6116 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: emboss-lib (= 6.6.0+dfsg-16), libc6 (>= 2.34), libexpat1 (>= 2.0.1), libx11-6, zlib1g (>= 1:1.1.4), emboss-data (= 6.6.0+dfsg-16) Recommends: primer3, dialign Suggests: emboss-doc, emboss-test, embassy, clustalw Description: European molecular biology open software suite Homepage: https://emboss.sourceforge.net Description-md5: 631f0b40fa19ed8d24d0b67284b2cdaa Tag: field::biology, field::biology:bioinformatics, field::biology:molecular, implemented-in::c, interface::commandline, role::program, scope::suite, scope::utility, use::analysing, use::comparing, use::converting, use::editing, use::organizing, use::searching, use::text-formatting, use::typesetting, use::viewing, works-with-format::TODO, works-with-format::plaintext, works-with::TODO, works-with::db, works-with::text Section: science Priority: optional Filename: pool/main/e/emboss/emboss_6.6.0+dfsg-16_amd64.deb Size: 1087956 MD5sum: 30835ba9aeb74b32acda781b201779cc SHA256: 9d9c8b0765c251eb79492484d2ef59071b32e08c7fb3d9ad512db4066cebb6f4 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat --apt emboss=6.6.0+dfsg-16 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211856~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat --apt emboss=6.6.0+dfsg-16 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 6.1.0-38-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.147-1 (2025-08-02) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpnkn5ldfu 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpnkn5ldfu 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu/dev/ptmx'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu/dev/ptmx'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu/dev/console'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu/dev/console'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu/dev/shm'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu/dev/shm'] 0m0.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.2s DEBUG: Created policy-rc.d and chmodded it. 0m0.2s DEBUG: Created resolv.conf. 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpnkn5ldfu/tmp/scripts/ 0m0.2s INFO: Running scripts post_chroot_unpack 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-get', 'update'] 0m1.4s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [138 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9668 kB] Fetched 9805 kB in 1s (13.6 MB/s) Reading package lists... 0m1.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-get', 'update'] 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-get', '-yf', 'dist-upgrade'] 0m1.7s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-get', '-yf', 'dist-upgrade'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.8s DUMP: 8fc0def95551deb38dc214d6c9cce720 - 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.8s INFO: Running scripts post_setup 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_setup_dummy_users'] 0m2.3s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_setup_dummy_users'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_setup_forbid_home'] 0m2.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_setup_forbid_home'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_setup_minimize'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_setup_minimize'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_setup_zz_backports'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_setup_zz_backports'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m2.3s DUMP: install ok installed apt apt 3.0.3 install ok installed base-files base-files 13.8 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2+b5 install ok installed bsdutils bsdutils 1:2.41-5 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.68 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.3 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.41-5 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-5 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41-5 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.45-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41-5 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-7 install ok installed libssl3t64:amd64 libssl3t64 3.5.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.7-1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.7-1 install ok installed libuuid1:amd64 libuuid1 2.41-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.41-5 install ok installed login.defs login.defs 1:4.17.4-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41-5 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.1-1 install ok installed passwd passwd 1:4.17.4-2 install ok installed perl-base perl-base 5.40.1-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-4 install ok installed util-linux util-linux 2.41-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m2.3s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat 0m2.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu'] 0m2.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu'] 0m2.5s INFO: Running scripts is_testable 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/is_testable_uninstallable'] 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/is_testable_uninstallable'] 0m2.5s INFO: Running scripts pre_test 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_test_exceptions'] 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_test_exceptions'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_test_root_password'] 0m2.5s DUMP: New password: Retype new password: passwd: password updated successfully 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_test_root_password'] 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-cache', 'show', '--no-all-versions', 'emboss'] 0m2.7s DUMP: Package: emboss Version: 6.6.0+dfsg-15 Installed-Size: 6088 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: emboss-lib (= 6.6.0+dfsg-15), libc6 (>= 2.34), libexpat1 (>= 2.0.1), libx11-6, zlib1g (>= 1:1.1.4), emboss-data (= 6.6.0+dfsg-15) Recommends: primer3, dialign Suggests: emboss-doc, emboss-test, embassy, clustalw Description-en: European molecular biology open software suite EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community. The software automatically copes with data in a variety of formats and even allows transparent retrieval of sequence data from the web. Also, as extensive libraries are provided with the package, it is a platform to allow other scientists to develop and release software in true open source spirit. EMBOSS also integrates a range of currently available packages and tools for sequence analysis into a seamless whole. EMBOSS breaks the historical trend towards commercial software packages. Description-md5: 631f0b40fa19ed8d24d0b67284b2cdaa Homepage: https://emboss.sourceforge.net Tag: field::biology, field::biology:bioinformatics, field::biology:molecular, implemented-in::c, interface::commandline, role::program, scope::suite, scope::utility, use::analysing, use::comparing, use::converting, use::editing, use::organizing, use::searching, use::text-formatting, use::typesetting, use::viewing, works-with-format::TODO, works-with-format::plaintext, works-with::TODO, works-with::db, works-with::text Section: science Priority: optional Filename: pool/main/e/emboss/emboss_6.6.0+dfsg-15_amd64.deb Size: 1072080 MD5sum: 40e3d017b404af0f3373e24306a98e4f SHA256: f2dd4ff8e8f0f5233d1d2be701e06692e6c6df02ccaaed7eef0ff2147d95a0f7 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-cache', 'show', '--no-all-versions', 'emboss'] 0m2.7s INFO: apt-cache knows about the following packages: emboss 0m2.7s INFO: Running scripts pre_install 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_database-server'] 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_database-server'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_exceptions'] 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_exceptions'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_extras'] 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_extras'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_foreign_architecture'] 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_foreign_architecture'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-cache', 'policy'] 0m2.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release v=13.0,o=Debian,a=stable,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-cache', 'policy'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-cache', 'policy', 'emboss'] 0m2.7s DUMP: emboss: Installed: (none) Candidate: 6.6.0+dfsg-15 Version table: 6.6.0+dfsg-15 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-cache', 'policy', 'emboss'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-get', '-y', 'install', 'emboss'] 0m6.5s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: emboss-data emboss-lib fontconfig-config fonts-dejavu-core fonts-dejavu-mono libabsl20240722 libaom3 libavif16 libbrotli1 libcom-err2 libdav1d7 libde265-0 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libgav1-1 libgd3 libgomp1 libgssapi-krb5-2 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhpdf-2.3.0 libimagequant0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap2 liblerc4 libmariadb3 libpng16-16t64 libpq5 librav1e0.7 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsvtav1enc2 libtiff6 libwebp7 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxpm4 libyuv0 mariadb-common mysql-common Suggested packages: emboss-doc emboss-test embassy clustalw libgd-tools krb5-doc krb5-user libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc Recommended packages: primer3 dialign libheif-plugin-x265 libheif-plugin-aomenc krb5-locales libldap-common ca-certificates libsasl2-modules The following NEW packages will be installed: emboss emboss-data emboss-lib fontconfig-config fonts-dejavu-core fonts-dejavu-mono libabsl20240722 libaom3 libavif16 libbrotli1 libcom-err2 libdav1d7 libde265-0 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libgav1-1 libgd3 libgomp1 libgssapi-krb5-2 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhpdf-2.3.0 libimagequant0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap2 liblerc4 libmariadb3 libpng16-16t64 libpq5 librav1e0.7 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsvtav1enc2 libtiff6 libwebp7 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxpm4 libyuv0 mariadb-common mysql-common 0 upgraded, 53 newly installed, 0 to remove and 0 not upgraded. Need to get 80.6 MB of archives. After this operation, 545 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libaom3 amd64 3.12.1-1 [1871 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libdav1d7 amd64 1.5.1-1 [559 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libabsl20240722 amd64 20240722.0-4 [492 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libgav1-1 amd64 0.19.0-3+b1 [353 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 librav1e0.7 amd64 0.7.1-9+b2 [946 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 libyuv0 amd64 0.0.1904.20250204-1 [174 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libavif16 amd64 1.2.1-1.2 [133 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.48-1 [282 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 libheif-plugin-dav1d amd64 1.19.8-1 [11.7 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 libde265-0 amd64 1.0.15-1+b3 [189 kB] Get:21 http://deb.debian.org/debian trixie/main amd64 libheif-plugin-libde265 amd64 1.19.8-1 [15.3 kB] Get:22 http://deb.debian.org/debian trixie/main amd64 libheif1 amd64 1.19.8-1 [520 kB] Get:23 http://deb.debian.org/debian trixie/main amd64 libgomp1 amd64 14.2.0-19 [137 kB] Get:24 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get:25 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get:26 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:27 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:28 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get:29 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.7.0-3 [346 kB] Get:30 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:31 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:32 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:33 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:34 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get:35 http://deb.debian.org/debian trixie/main amd64 libxpm4 amd64 1:3.5.17-1+b3 [56.2 kB] Get:36 http://deb.debian.org/debian trixie/main amd64 libgd3 amd64 2.3.3-13 [126 kB] Get:37 http://deb.debian.org/debian trixie/main amd64 libhpdf-2.3.0 amd64 2.3.0+dfsg-1+b3 [343 kB] Get:38 http://deb.debian.org/debian trixie/main amd64 mysql-common all 5.8+1.1.1 [6784 B] Get:39 http://deb.debian.org/debian trixie/main amd64 mariadb-common all 1:11.8.2-1 [28.4 kB] Get:40 http://deb.debian.org/debian trixie/main amd64 libmariadb3 amd64 1:11.8.2-1 [187 kB] Get:41 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get:42 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get:43 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get:44 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get:45 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get:46 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get:47 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get:48 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get:49 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get:50 http://deb.debian.org/debian trixie/main amd64 libpq5 amd64 17.5-1 [226 kB] Get:51 http://deb.debian.org/debian trixie/main amd64 emboss-lib amd64 6.6.0+dfsg-15 [2874 kB] Get:52 http://deb.debian.org/debian trixie/main amd64 emboss-data all 6.6.0+dfsg-15 [61.1 MB] Get:53 http://deb.debian.org/debian trixie/main amd64 emboss amd64 6.6.0+dfsg-15 [1072 kB] Preconfiguring packages ... Fetched 80.6 MB in 1s (100 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4938 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libaom3:amd64. Preparing to unpack .../01-libaom3_3.12.1-1_amd64.deb ... Unpacking libaom3:amd64 (3.12.1-1) ... 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Selecting previously unselected package mysql-common. Preparing to unpack .../37-mysql-common_5.8+1.1.1_all.deb ... Unpacking mysql-common (5.8+1.1.1) ... Selecting previously unselected package mariadb-common. Preparing to unpack .../38-mariadb-common_1%3a11.8.2-1_all.deb ... Unpacking mariadb-common (1:11.8.2-1) ... Selecting previously unselected package libmariadb3:amd64. Preparing to unpack .../39-libmariadb3_1%3a11.8.2-1_amd64.deb ... Unpacking libmariadb3:amd64 (1:11.8.2-1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../40-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../41-libcom-err2_1.47.2-3+b3_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../42-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../43-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../44-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../45-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../46-libsasl2-modules-db_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../47-libsasl2-2_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../48-libldap2_2.6.10+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.10+dfsg-1) ... Selecting previously unselected package libpq5:amd64. Preparing to unpack .../49-libpq5_17.5-1_amd64.deb ... Unpacking libpq5:amd64 (17.5-1) ... Selecting previously unselected package emboss-lib. Preparing to unpack .../50-emboss-lib_6.6.0+dfsg-15_amd64.deb ... Unpacking emboss-lib (6.6.0+dfsg-15) ... Selecting previously unselected package emboss-data. Preparing to unpack .../51-emboss-data_6.6.0+dfsg-15_all.deb ... Unpacking emboss-data (6.6.0+dfsg-15) ... Selecting previously unselected package emboss. Preparing to unpack .../52-emboss_6.6.0+dfsg-15_amd64.deb ... Unpacking emboss (6.6.0+dfsg-15) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... Setting up libaom3:amd64 (3.12.1-1) ... Setting up mysql-common (5.8+1.1.1) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-5) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libdeflate0:amd64 (1.23-2) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up libgomp1:amd64 (14.2.0-19) ... Setting up libabsl20240722:amd64 (20240722.0-4) ... Setting up emboss-data (6.6.0+dfsg-15) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up mariadb-common (1:11.8.2-1) ... update-alternatives: using /etc/mysql/mariadb.cnf to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Setting up libimagequant0:amd64 (2.18.0-1+b2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.48-1) ... Setting up libmariadb3:amd64 (1:11.8.2-1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libgav1-1:amd64 (0.19.0-3+b1) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up libwebp7:amd64 (1.5.0-0.1) ... Setting up libdav1d7:amd64 (1.5.1-1) ... Setting up libtiff6:amd64 (4.7.0-3) ... Setting up librav1e0.7:amd64 (0.7.1-9+b2) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libde265-0:amd64 (1.0.15-1+b3) ... Setting up libyuv0:amd64 (0.0.1904.20250204-1) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up libavif16:amd64 (1.2.1-1.2) ... Setting up libhpdf-2.3.0:amd64 (2.3.0+dfsg-1+b3) ... Setting up libxpm4:amd64 (1:3.5.17-1+b3) ... Setting up fontconfig-config (2.15.0-2.3) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libfontconfig1:amd64 (2.15.0-2.3) ... Setting up libpq5:amd64 (17.5-1) ... Setting up libheif-plugin-dav1d:amd64 (1.19.8-1) ... Setting up libheif1:amd64 (1.19.8-1) ... Setting up libgd3:amd64 (2.3.3-13) ... Setting up emboss-lib (6.6.0+dfsg-15) ... Setting up libheif-plugin-libde265:amd64 (1.19.8-1) ... Setting up emboss (6.6.0+dfsg-15) ... Processing triggers for libc-bin (2.41-12) ... 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-get', '-y', 'install', 'emboss'] 0m6.5s INFO: Running scripts post_install 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_install_exceptions'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_install_exceptions'] 0m6.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu'] 0m6.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu'] 0m6.7s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpnkn5ldfu to testing 0m6.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m6.7s INFO: Running scripts pre_distupgrade 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_distupgrade_exceptions'] 0m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_distupgrade_exceptions'] 0m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-get', 'update'] 0m8.2s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [146 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [9806 kB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6545 kB] Fetched 16.5 MB in 1s (15.6 MB/s) Reading package lists... 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-get', 'update'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-get', '-yf', 'dist-upgrade'] 0m10.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libgomp1 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: gcc-15-base The following packages will be upgraded: apt base-files bsdutils gcc-14-base init-system-helpers libapt-pkg7.0 libaudit-common libaudit1 libavif16 libblkid1 libde265-0 libgcc-s1 libgmp10 libgomp1 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libimagequant0 liblastlog2-2 libmariadb3 libmount1 libpcre2-8-0 libpng16-16t64 libpq5 libsmartcols1 libssl3t64 libstdc++6 libsystemd0 libtiff6 libudev1 libuuid1 libyuv0 login login.defs mariadb-common mount openssl-provider-legacy passwd tzdata util-linux 40 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 14.6 MB of archives. After this operation, 1613 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 base-files amd64 14 [72.9 kB] Get:2 http://deb.debian.org/debian forky/main amd64 bsdutils amd64 1:2.41.1-1 [110 kB] Get:3 http://deb.debian.org/debian forky/main amd64 liblastlog2-2 amd64 2.41.1-1 [28.6 kB] Get:4 http://deb.debian.org/debian forky/main amd64 libuuid1 amd64 2.41.1-1 [37.7 kB] Get:5 http://deb.debian.org/debian forky/main amd64 libblkid1 amd64 2.41.1-1 [171 kB] Get:6 http://deb.debian.org/debian forky/main amd64 libmount1 amd64 2.41.1-1 [209 kB] Get:7 http://deb.debian.org/debian forky/main amd64 libsmartcols1 amd64 2.41.1-1 [143 kB] Get:8 http://deb.debian.org/debian forky/main amd64 util-linux amd64 2.41.1-1 [1236 kB] Get:9 http://deb.debian.org/debian forky/main amd64 mount amd64 2.41.1-1 [162 kB] Get:10 http://deb.debian.org/debian forky/main amd64 gcc-15-base amd64 15.2.0-2 [52.3 kB] Get:11 http://deb.debian.org/debian forky/main amd64 libgcc-s1 amd64 15.2.0-2 [75.4 kB] Get:12 http://deb.debian.org/debian forky/main amd64 openssl-provider-legacy amd64 3.5.2-1 [307 kB] Get:13 http://deb.debian.org/debian forky/main amd64 libssl3t64 amd64 3.5.2-1 [2438 kB] Get:14 http://deb.debian.org/debian forky/main amd64 libstdc++6 amd64 15.2.0-2 [736 kB] Get:15 http://deb.debian.org/debian forky/main amd64 libsystemd0 amd64 258~rc3-1 [465 kB] Get:16 http://deb.debian.org/debian forky/main amd64 libudev1 amd64 258~rc3-1 [156 kB] Get:17 http://deb.debian.org/debian forky/main amd64 libapt-pkg7.0 amd64 3.1.5 [1182 kB] Get:18 http://deb.debian.org/debian forky/main amd64 apt amd64 3.1.5 [1479 kB] Get:19 http://deb.debian.org/debian forky/main amd64 init-system-helpers all 1.69 [39.3 kB] Get:20 http://deb.debian.org/debian forky/main amd64 libaudit-common all 1:4.0.5-1 [13.5 kB] Get:21 http://deb.debian.org/debian forky/main amd64 libaudit1 amd64 1:4.0.5-1 [59.4 kB] Get:22 http://deb.debian.org/debian forky/main amd64 login amd64 1:4.16.0-2+really2.41.1-1 [115 kB] Get:23 http://deb.debian.org/debian forky/main amd64 libgmp10 amd64 2:6.3.0+dfsg-4 [560 kB] Get:24 http://deb.debian.org/debian forky/main amd64 libpcre2-8-0 amd64 10.46-1 [298 kB] Get:25 http://deb.debian.org/debian forky/main amd64 login.defs all 1:4.18.0-1 [211 kB] Get:26 http://deb.debian.org/debian forky/main amd64 passwd amd64 1:4.18.0-1 [1284 kB] Get:27 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get:28 http://deb.debian.org/debian forky/main amd64 libgomp1 amd64 15.2.0-2 [152 kB] Get:29 http://deb.debian.org/debian forky/main amd64 gcc-14-base amd64 14.3.0-5 [51.5 kB] Get:30 http://deb.debian.org/debian forky/main amd64 libyuv0 amd64 0.0.1916.20250814-1 [172 kB] Get:31 http://deb.debian.org/debian forky/main amd64 libavif16 amd64 1.3.0-1 [135 kB] Get:32 http://deb.debian.org/debian forky/main amd64 libde265-0 amd64 1.0.16-1 [189 kB] Get:33 http://deb.debian.org/debian forky/main amd64 libheif-plugin-dav1d amd64 1.20.2-2 [19.2 kB] Get:34 http://deb.debian.org/debian forky/main amd64 libheif1 amd64 1.20.2-2 [627 kB] Get:35 http://deb.debian.org/debian forky/main amd64 libheif-plugin-libde265 amd64 1.20.2-2 [17.6 kB] Get:36 http://deb.debian.org/debian forky/main amd64 libimagequant0 amd64 4.4.0-3 [251 kB] Get:37 http://deb.debian.org/debian forky/main amd64 mariadb-common all 1:11.8.3-1 [28.8 kB] Get:38 http://deb.debian.org/debian forky/main amd64 libmariadb3 amd64 1:11.8.3-1+b1 [188 kB] Get:39 http://deb.debian.org/debian forky/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get:40 http://deb.debian.org/debian forky/main amd64 libpq5 amd64 17.6-1 [227 kB] Get:41 http://deb.debian.org/debian forky/main amd64 libtiff6 amd64 4.7.0-4 [346 kB] Preconfiguring packages ... Fetched 14.6 MB in 0s (56.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7876 files and directories currently installed.) Preparing to unpack .../base-files_14_amd64.deb ... Unpacking base-files (14) over (13.8) ... Setting up base-files (14) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7881 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.5.2-1_amd64.deb ... Unpacking libssl3t64:amd64 (3.5.2-1) over (3.5.1-1) ... Setting up libssl3t64:amd64 (3.5.2-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7881 files and directories currently installed.) Preparing to unpack .../libsystemd0_258~rc3-1_amd64.deb ... Unpacking libsystemd0:amd64 (258~rc3-1) over (257.7-1) ... Setting up libsystemd0:amd64 (258~rc3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7881 files and directories currently installed.) Preparing to unpack .../libudev1_258~rc3-1_amd64.deb ... Unpacking libudev1:amd64 (258~rc3-1) over (257.7-1) ... Setting up libudev1:amd64 (258~rc3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7881 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_3.1.5_amd64.deb ... Unpacking libapt-pkg7.0:amd64 (3.1.5) over (3.0.3) ... Setting up libapt-pkg7.0:amd64 (3.1.5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7881 files and directories currently installed.) Preparing to unpack .../archives/apt_3.1.5_amd64.deb ... Unpacking apt (3.1.5) over (3.0.3) ... Setting up apt (3.1.5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7879 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.69_all.deb ... Unpacking init-system-helpers (1.69) over (1.68) ... Setting up init-system-helpers (1.69) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7880 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a4.0.5-1_all.deb ... Unpacking libaudit-common (1:4.0.5-1) over (1:4.0.2-2) ... Setting up libaudit-common (1:4.0.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7880 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.0.5-1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.0.5-1) over (1:4.0.2-2+b2) ... Setting up libaudit1:amd64 (1:4.0.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7879 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.41.1-1_amd64.deb ... Unpacking login (1:4.16.0-2+really2.41.1-1) over (1:4.16.0-2+really2.41-5) ... Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-4_amd64.deb ... Unpacking libgmp10:amd64 (2:6.3.0+dfsg-4) over (2:6.3.0+dfsg-3) ... Setting up libgmp10:amd64 (2:6.3.0+dfsg-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7881 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.46-1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.46-1) over (10.45-1) ... Setting up libpcre2-8-0:amd64 (10.46-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7881 files and directories currently installed.) Preparing to unpack .../00-login.defs_1%3a4.18.0-1_all.deb ... Unpacking login.defs (1:4.18.0-1) over (1:4.17.4-2) ... Preparing to unpack .../01-passwd_1%3a4.18.0-1_amd64.deb ... Unpacking passwd (1:4.18.0-1) over (1:4.17.4-2) ... Preparing to unpack .../02-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) over (2025b-4) ... Preparing to unpack .../03-libgomp1_15.2.0-2_amd64.deb ... Unpacking libgomp1:amd64 (15.2.0-2) over (14.2.0-19) ... Preparing to unpack .../04-gcc-14-base_14.3.0-5_amd64.deb ... Unpacking gcc-14-base:amd64 (14.3.0-5) over (14.2.0-19) ... Preparing to unpack .../05-libyuv0_0.0.1916.20250814-1_amd64.deb ... Unpacking libyuv0:amd64 (0.0.1916.20250814-1) over (0.0.1904.20250204-1) ... Preparing to unpack .../06-libavif16_1.3.0-1_amd64.deb ... Unpacking libavif16:amd64 (1.3.0-1) over (1.2.1-1.2) ... Preparing to unpack .../07-libde265-0_1.0.16-1_amd64.deb ... Unpacking libde265-0:amd64 (1.0.16-1) over (1.0.15-1+b3) ... Preparing to unpack .../08-libheif-plugin-dav1d_1.20.2-2_amd64.deb ... Unpacking libheif-plugin-dav1d:amd64 (1.20.2-2) over (1.19.8-1) ... Preparing to unpack .../09-libheif1_1.20.2-2_amd64.deb ... Unpacking libheif1:amd64 (1.20.2-2) over (1.19.8-1) ... Preparing to unpack .../10-libheif-plugin-libde265_1.20.2-2_amd64.deb ... Unpacking libheif-plugin-libde265:amd64 (1.20.2-2) over (1.19.8-1) ... Preparing to unpack .../11-libimagequant0_4.4.0-3_amd64.deb ... Unpacking libimagequant0:amd64 (4.4.0-3) over (2.18.0-1+b2) ... Preparing to unpack .../12-mariadb-common_1%3a11.8.3-1_all.deb ... Unpacking mariadb-common (1:11.8.3-1) over (1:11.8.2-1) ... Preparing to unpack .../13-libmariadb3_1%3a11.8.3-1+b1_amd64.deb ... Unpacking libmariadb3:amd64 (1:11.8.3-1+b1) over (1:11.8.2-1) ... Preparing to unpack .../14-libpng16-16t64_1.6.50-1_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.50-1) over (1.6.48-1) ... Preparing to unpack .../15-libpq5_17.6-1_amd64.deb ... Unpacking libpq5:amd64 (17.6-1) over (17.5-1) ... Preparing to unpack .../16-libtiff6_4.7.0-4_amd64.deb ... Unpacking libtiff6:amd64 (4.7.0-4) over (4.7.0-3) ... Setting up gcc-14-base:amd64 (14.3.0-5) ... Setting up login.defs (1:4.18.0-1) ... Setting up libpq5:amd64 (17.6-1) ... Setting up libgomp1:amd64 (15.2.0-2) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Sep 5 16:29:49 UTC 2025. Universal Time is now: Fri Sep 5 16:29:49 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up mariadb-common (1:11.8.3-1) ... Setting up libimagequant0:amd64 (4.4.0-3) ... Setting up libpng16-16t64:amd64 (1.6.50-1) ... Setting up libmariadb3:amd64 (1:11.8.3-1+b1) ... Setting up passwd (1:4.18.0-1) ... Setting up mount (2.41.1-1) ... Setting up libtiff6:amd64 (4.7.0-4) ... Setting up libde265-0:amd64 (1.0.16-1) ... Setting up libyuv0:amd64 (0.0.1916.20250814-1) ... Setting up login (1:4.16.0-2+really2.41.1-1) ... Setting up libavif16:amd64 (1.3.0-1) ... Setting up libheif1:amd64 (1.20.2-2) ... Setting up libheif-plugin-dav1d:amd64 (1.20.2-2) ... Setting up libheif-plugin-libde265:amd64 (1.20.2-2) ... Processing triggers for libc-bin (2.41-12) ... 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-get', '-yf', 'dist-upgrade'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m11.2s DUMP: 299beaac712d23986b2be896142240ab - 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-cache', 'show', '--no-all-versions', 'emboss'] 0m11.3s DUMP: Package: emboss Version: 6.6.0+dfsg-15 Installed-Size: 6088 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: emboss-lib (= 6.6.0+dfsg-15), libc6 (>= 2.34), libexpat1 (>= 2.0.1), libx11-6, zlib1g (>= 1:1.1.4), emboss-data (= 6.6.0+dfsg-15) Recommends: primer3, dialign Suggests: emboss-doc, emboss-test, embassy, clustalw Description-en: European molecular biology open software suite EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community. The software automatically copes with data in a variety of formats and even allows transparent retrieval of sequence data from the web. Also, as extensive libraries are provided with the package, it is a platform to allow other scientists to develop and release software in true open source spirit. EMBOSS also integrates a range of currently available packages and tools for sequence analysis into a seamless whole. EMBOSS breaks the historical trend towards commercial software packages. Description-md5: 631f0b40fa19ed8d24d0b67284b2cdaa Homepage: https://emboss.sourceforge.net Tag: field::biology, field::biology:bioinformatics, field::biology:molecular, implemented-in::c, interface::commandline, role::program, scope::suite, scope::utility, use::analysing, use::comparing, use::converting, use::editing, use::organizing, use::searching, use::text-formatting, use::typesetting, use::viewing, works-with-format::TODO, works-with-format::plaintext, works-with::TODO, works-with::db, works-with::text Section: science Priority: optional Filename: pool/main/e/emboss/emboss_6.6.0+dfsg-15_amd64.deb Size: 1072080 MD5sum: 40e3d017b404af0f3373e24306a98e4f SHA256: f2dd4ff8e8f0f5233d1d2be701e06692e6c6df02ccaaed7eef0ff2147d95a0f7 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-cache', 'show', '--no-all-versions', 'emboss'] 0m11.3s INFO: apt-cache knows about the following packages: emboss 0m11.3s INFO: Running scripts pre_install 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_database-server'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_database-server'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_exceptions'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_exceptions'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_extras'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_extras'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-cache', 'policy'] 0m11.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-cache', 'policy'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-cache', 'policy', 'emboss'] 0m11.4s DUMP: emboss: Installed: 6.6.0+dfsg-15 Candidate: 6.6.0+dfsg-15 Version table: *** 6.6.0+dfsg-15 500 500 http://deb.debian.org/debian forky/main amd64 Packages 100 /var/lib/dpkg/status 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-cache', 'policy', 'emboss'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-get', '-y', 'install', 'emboss'] 0m11.6s DUMP: Reading package lists... Building dependency tree... Reading state information... emboss is already the newest version (6.6.0+dfsg-15). The following package was automatically installed and is no longer required: libgomp1 Use 'sudo apt autoremove' to remove it. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-get', '-y', 'install', 'emboss'] 0m11.6s INFO: Running scripts post_install 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_install_exceptions'] 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_install_exceptions'] 0m11.6s INFO: Running scripts post_distupgrade 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_distupgrade_exceptions'] 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_distupgrade_exceptions'] 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_distupgrade_zz_backports'] 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_distupgrade_zz_backports'] 0m11.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu'] 0m12.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu'] 0m12.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpnkn5ldfu to sid 0m12.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m12.0s INFO: Running scripts pre_distupgrade 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_distupgrade_exceptions'] 0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_distupgrade_exceptions'] 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-get', 'update'] 0m14.0s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [216 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.2 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7431 kB] Fetched 17.8 MB in 2s (11.5 MB/s) Reading package lists... 0m14.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-get', 'update'] 0m14.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-get', '-yf', 'dist-upgrade'] 0m18.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libgomp1 Use 'sudo apt autoremove' to remove it. The following packages will be upgraded: bash bsdutils emboss emboss-data emboss-lib fontconfig-config gcc-14-base gcc-15-base libblkid1 libfontconfig1 libgcc-s1 libgmp10 libgomp1 liblastlog2-2 liblzma5 libmount1 libsmartcols1 libstdc++6 libsystemd0 libudev1 libuuid1 libzstd1 login mount util-linux 25 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 72.7 MB of archives. After this operation, 1635 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bash amd64 5.3-1 [1556 kB] Get:2 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.41.1-2 [110 kB] Get:3 http://deb.debian.org/debian sid/main amd64 liblastlog2-2 amd64 2.41.1-2 [28.6 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.41.1-2 [37.8 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.41.1-2 [171 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.41.1-2 [209 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.41.1-2 [143 kB] Get:8 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.41.1-2 [1236 kB] Get:9 http://deb.debian.org/debian sid/main amd64 mount amd64 2.41.1-2 [162 kB] Get:10 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.41.1-2 [115 kB] Get:11 http://deb.debian.org/debian sid/main amd64 gcc-15-base amd64 15.2.0-3 [52.5 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 15.2.0-3 [737 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 15.2.0-3 [152 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 15.2.0-3 [75.4 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5 [574 kB] Get:16 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.8.1-1.1 [316 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 258~rc4-1 [465 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 258~rc4-1 [156 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.7+dfsg-1.1 [320 kB] Get:20 http://deb.debian.org/debian sid/main amd64 emboss amd64 6.6.0+dfsg-16 [1088 kB] Get:21 http://deb.debian.org/debian sid/main amd64 emboss-lib amd64 6.6.0+dfsg-16 [3088 kB] Get:22 http://deb.debian.org/debian sid/main amd64 emboss-data all 6.6.0+dfsg-16 [61.1 MB] Get:23 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get:24 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.3.0-6 [51.9 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Preconfiguring packages ... Fetched 72.7 MB in 1s (88.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7879 files and directories currently installed.) Preparing to unpack .../archives/bash_5.3-1_amd64.deb ... Unpacking bash (5.3-1) over (5.2.37-2+b5) ... Setting up bash (5.3-1) ... Installing new version of config file /etc/bash.bashrc ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7880 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.41.1-2_amd64.deb ... Unpacking bsdutils (1:2.41.1-2) over (1:2.41.1-1) ... Setting up bsdutils (1:2.41.1-2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7880 files and directories currently installed.) Preparing to unpack .../libuuid1_2.41.1-2_amd64.deb ... Unpacking libuuid1:amd64 (2.41.1-2) over (2.41.1-1) ... Setting up libuuid1:amd64 (2.41.1-2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7880 files and directories currently installed.) Preparing to unpack .../libmount1_2.41.1-2_amd64.deb ... Unpacking libmount1:amd64 (2.41.1-2) over (2.41.1-1) ... Setting up libmount1:amd64 (2.41.1-2) ... (Reading database ... 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Setting up gcc-15-base:amd64 (15.2.0-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7881 files and directories currently installed.) Preparing to unpack .../libstdc++6_15.2.0-3_amd64.deb ... Unpacking libstdc++6:amd64 (15.2.0-3) over (15.2.0-2) ... Setting up libstdc++6:amd64 (15.2.0-3) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7881 files and directories currently installed.) Preparing to unpack .../liblzma5_5.8.1-1.1_amd64.deb ... Unpacking liblzma5:amd64 (5.8.1-1.1) over (5.8.1-1) ... Setting up liblzma5:amd64 (5.8.1-1.1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7881 files and directories currently installed.) Preparing to unpack .../0-emboss_6.6.0+dfsg-16_amd64.deb ... Unpacking emboss (6.6.0+dfsg-16) over (6.6.0+dfsg-15) ... Preparing to unpack .../1-emboss-lib_6.6.0+dfsg-16_amd64.deb ... Unpacking emboss-lib (6.6.0+dfsg-16) over (6.6.0+dfsg-15) ... Preparing to unpack .../2-emboss-data_6.6.0+dfsg-16_all.deb ... Unpacking emboss-data (6.6.0+dfsg-16) over (6.6.0+dfsg-15) ... Preparing to unpack .../3-fontconfig-config_2.15.0-2.4_amd64.deb ... Unpacking fontconfig-config (2.15.0-2.4) over (2.15.0-2.3) ... Preparing to unpack .../4-gcc-14-base_14.3.0-6_amd64.deb ... Unpacking gcc-14-base:amd64 (14.3.0-6) over (14.3.0-5) ... Preparing to unpack .../5-libfontconfig1_2.15.0-2.4_amd64.deb ... Unpacking libfontconfig1:amd64 (2.15.0-2.4) over (2.15.0-2.3) ... Setting up gcc-14-base:amd64 (14.3.0-6) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up libgomp1:amd64 (15.2.0-3) ... Setting up emboss-data (6.6.0+dfsg-16) ... Setting up mount (2.41.1-2) ... Setting up emboss-lib (6.6.0+dfsg-16) ... Setting up libfontconfig1:amd64 (2.15.0-2.4) ... Setting up login (1:4.16.0-2+really2.41.1-2) ... Setting up emboss (6.6.0+dfsg-16) ... Processing triggers for debianutils (5.23.2) ... Processing triggers for libc-bin (2.41-12) ... 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-get', '-yf', 'dist-upgrade'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m18.8s DUMP: e07ec5c0c2d1aa0d867fde3fff453e93 - 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-cache', 'show', '--no-all-versions', 'emboss'] 0m19.0s DUMP: Package: emboss Version: 6.6.0+dfsg-16 Installed-Size: 6116 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: emboss-lib (= 6.6.0+dfsg-16), libc6 (>= 2.34), libexpat1 (>= 2.0.1), libx11-6, zlib1g (>= 1:1.1.4), emboss-data (= 6.6.0+dfsg-16) Recommends: primer3, dialign Suggests: emboss-doc, emboss-test, embassy, clustalw Description-en: European molecular biology open software suite EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community. The software automatically copes with data in a variety of formats and even allows transparent retrieval of sequence data from the web. Also, as extensive libraries are provided with the package, it is a platform to allow other scientists to develop and release software in true open source spirit. EMBOSS also integrates a range of currently available packages and tools for sequence analysis into a seamless whole. EMBOSS breaks the historical trend towards commercial software packages. Description-md5: 631f0b40fa19ed8d24d0b67284b2cdaa Homepage: https://emboss.sourceforge.net Tag: field::biology, field::biology:bioinformatics, field::biology:molecular, implemented-in::c, interface::commandline, role::program, scope::suite, scope::utility, use::analysing, use::comparing, use::converting, use::editing, use::organizing, use::searching, use::text-formatting, use::typesetting, use::viewing, works-with-format::TODO, works-with-format::plaintext, works-with::TODO, works-with::db, works-with::text Section: science Priority: optional Filename: pool/main/e/emboss/emboss_6.6.0+dfsg-16_amd64.deb Size: 1087956 MD5sum: 30835ba9aeb74b32acda781b201779cc SHA256: 9d9c8b0765c251eb79492484d2ef59071b32e08c7fb3d9ad512db4066cebb6f4 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-cache', 'show', '--no-all-versions', 'emboss'] 0m19.0s INFO: apt-cache knows about the following packages: emboss 0m19.0s INFO: Running scripts pre_install 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_database-server'] 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_database-server'] 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_exceptions'] 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_exceptions'] 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_extras'] 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_extras'] 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_foreign_architecture'] 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-cache', 'policy'] 0m19.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-cache', 'policy'] 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-cache', 'policy', 'emboss'] 0m19.0s DUMP: emboss: Installed: 6.6.0+dfsg-16 Candidate: 6.6.0+dfsg-16 Version table: *** 6.6.0+dfsg-16 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m19.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-cache', 'policy', 'emboss'] 0m19.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-get', '-y', 'install', 'emboss'] 0m19.3s DUMP: Reading package lists... Building dependency tree... Reading state information... emboss is already the newest version (6.6.0+dfsg-16). The following package was automatically installed and is no longer required: libgomp1 Use 'sudo apt autoremove' to remove it. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-get', '-y', 'install', 'emboss'] 0m19.3s INFO: Running scripts post_install 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_install_exceptions'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_install_exceptions'] 0m19.3s INFO: Running scripts post_distupgrade 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_distupgrade_exceptions'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_distupgrade_exceptions'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_distupgrade_zz_backports'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_distupgrade_zz_backports'] 0m19.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu'] 0m19.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu'] 0m19.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu'] 0m20.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu'] 0m20.0s INFO: Running scripts pre_install 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_database-server'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_database-server'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_exceptions'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_exceptions'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_extras'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_extras'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_foreign_architecture'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_foreign_architecture'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-cache', 'policy'] 0m20.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m20.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-cache', 'policy'] 0m20.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-cache', 'policy', 'emboss'] 0m20.2s DUMP: emboss: Installed: 6.6.0+dfsg-16 Candidate: 6.6.0+dfsg-16 Version table: *** 6.6.0+dfsg-16 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m20.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-cache', 'policy', 'emboss'] 0m20.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-get', '-y', 'install', 'emboss=6.6.0+dfsg-16'] 0m20.4s DUMP: Reading package lists... Building dependency tree... Reading state information... emboss is already the newest version (6.6.0+dfsg-16). The following package was automatically installed and is no longer required: libgomp1 Use 'sudo apt autoremove' to remove it. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-get', '-y', 'install', 'emboss=6.6.0+dfsg-16'] 0m20.4s INFO: Running scripts post_install 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_install_exceptions'] 0m20.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_install_exceptions'] 0m20.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu'] 0m20.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu'] 0m21.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', '-ac', '--ignore-obsolete'] 0m22.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', '-ac', '--ignore-obsolete'] 0m22.5s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m22.5s DUMP: 0.15.9~deb12u1 0m22.5s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m22.5s INFO: Running adequate version 0.15.9~deb12u1 now. 0m22.5s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'emboss'] 0m27.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'emboss'] 0m27.3s INFO: Running scripts pre_remove 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_remove_exceptions'] 0m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/pre_remove_exceptions'] 0m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m28.6s DUMP: install ok installed apt apt 3.1.5 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.3-1 install ok installed bsdutils bsdutils 1:2.41.1-2 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed emboss emboss 6.6.0+dfsg-16 install ok installed emboss-data emboss-data 6.6.0+dfsg-16 install ok installed emboss-lib emboss-lib 6.6.0+dfsg-16 install ok installed findutils findutils 4.10.0-3 install ok installed fontconfig-config fontconfig-config 2.15.0-2.4 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed gcc-14-base:amd64 gcc-14-base 14.3.0-6 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libabsl20240722:amd64 libabsl20240722 20240722.0-4 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libaom3:amd64 libaom3 3.12.1-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.5 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.5-1 install ok installed libaudit1:amd64 libaudit1 1:4.0.5-1 install ok installed libavif16:amd64 libavif16 1.3.0-1 install ok installed libblkid1:amd64 libblkid1 2.41.1-2 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b7 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcom-err2:amd64 libcom-err2 1.47.2-3+b3 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdav1d7:amd64 libdav1d7 1.5.1-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libde265-0:amd64 libde265-0 1.0.16-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libdeflate0:amd64 libdeflate0 1.23-2 install ok installed libexpat1:amd64 libexpat1 2.7.1-2 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-2.4 install ok installed libfreetype6:amd64 libfreetype6 2.13.3+dfsg-1 install ok installed libgav1-1:amd64 libgav1-1 0.19.0-3+b1 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-3 install ok installed libgd3:amd64 libgd3 2.3.3-13 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5 install ok installed libgomp1:amd64 libgomp1 15.2.0-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-5 install ok installed libheif-plugin-dav1d:amd64 libheif-plugin-dav1d 1.20.2-2 install ok installed libheif-plugin-libde265:amd64 libheif-plugin-libde265 1.20.2-2 install ok installed libheif1:amd64 libheif1 1.20.2-2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed libhpdf-2.3.0:amd64 libhpdf-2.3.0 2.3.0+dfsg-1+b3 install ok installed libimagequant0:amd64 libimagequant0 4.4.0-3 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b2 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-4 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-5 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-5 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.1-2 install ok installed libldap2:amd64 libldap2 2.6.10+dfsg-1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-5 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1.1 install ok installed libmariadb3:amd64 libmariadb3 1:11.8.3-1+b1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.1-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.50-1 install ok installed libpq5:amd64 libpq5 17.6-1 install ok installed librav1e0.7:amd64 librav1e0.7 0.7.1-9+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-9 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-9 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.5.0-0.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.1-2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-7 install ok installed libssl3t64:amd64 libssl3t64 3.5.2-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-3 install ok installed libsvtav1enc2:amd64 libsvtav1enc2 2.3.0+dfsg-1 install ok installed libsystemd0:amd64 libsystemd0 258~rc4-1 install ok installed libtiff6:amd64 libtiff6 4.7.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 258~rc4-1 install ok installed libuuid1:amd64 libuuid1 2.41.1-2 install ok installed libwebp7:amd64 libwebp7 1.5.0-0.1 install ok installed libx11-6:amd64 libx11-6 2:1.8.12-1 install ok installed libx11-data libx11-data 2:1.8.12-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-1 install ok installed libxpm4:amd64 libxpm4 1:3.5.17-1+b3 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libyuv0:amd64 libyuv0 0.0.1916.20250814-1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1.1 install ok installed login login 1:4.16.0-2+really2.41.1-2 install ok installed login.defs login.defs 1:4.18.0-1 install ok installed mariadb-common mariadb-common 1:11.8.3-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41.1-2 install ok installed mysql-common mysql-common 5.8+1.1.1 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.2-1 install ok installed passwd passwd 1:4.18.0-1 install ok installed perl-base perl-base 5.40.1-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-5 install ok installed util-linux util-linux 2.41.1-2 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-get', 'remove', '--allow-remove-essential', 'emboss-data', 'emboss-lib', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'libabsl20240722:amd64', 'libaom3:amd64', 'libavif16:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgav1-1:amd64', 'libgd3:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhpdf-2.3.0:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'libmariadb3:amd64', 'libpng16-16t64:amd64', 'libpq5:amd64', 'librav1e0.7:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsvtav1enc2:amd64', 'libtiff6:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxpm4:amd64', 'libyuv0:amd64', 'mariadb-common', 'mysql-common', 'emboss'] 0m29.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: emboss emboss-data emboss-lib fontconfig-config fonts-dejavu-core fonts-dejavu-mono libabsl20240722 libaom3 libavif16 libbrotli1 libcom-err2 libdav1d7 libde265-0 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libgav1-1 libgd3 libgomp1 libgssapi-krb5-2 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhpdf-2.3.0 libimagequant0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap2 liblerc4 libmariadb3 libpng16-16t64 libpq5 librav1e0.7 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsvtav1enc2 libtiff6 libwebp7 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxpm4 libyuv0 mariadb-common mysql-common 0 upgraded, 0 newly installed, 53 to remove and 0 not upgraded. After this operation, 547 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7881 files and directories currently installed.) Removing emboss (6.6.0+dfsg-16) ... Removing emboss-data (6.6.0+dfsg-16) ... Removing emboss-lib (6.6.0+dfsg-16) ... Removing libgd3:amd64 (2.3.3-13) ... Removing libfontconfig1:amd64 (2.15.0-2.4) ... Removing fontconfig-config (2.15.0-2.4) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing libavif16:amd64 (1.3.0-1) ... Removing libgav1-1:amd64 (0.19.0-3+b1) ... Removing libabsl20240722:amd64 (20240722.0-4) ... Removing libaom3:amd64 (3.12.1-1) ... Removing libfreetype6:amd64 (2.13.3+dfsg-1) ... Removing libbrotli1:amd64 (1.1.0-2+b7) ... Removing libpq5:amd64 (17.6-1) ... Removing libgssapi-krb5-2:amd64 (1.21.3-5) ... Removing libkrb5-3:amd64 (1.21.3-5) ... Removing libcom-err2:amd64 (1.47.2-3+b3) ... Removing libtiff6:amd64 (4.7.0-4) ... Removing libdeflate0:amd64 (1.23-2) ... Removing libexpat1:amd64 (2.7.1-2) ... Removing libgomp1:amd64 (15.2.0-3) ... Removing libhpdf-2.3.0:amd64 (2.3.0+dfsg-1+b3) ... Removing libimagequant0:amd64 (4.4.0-3) ... Removing libjbig0:amd64 (2.1-6.1+b2) ... Removing libyuv0:amd64 (0.0.1916.20250814-1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-4) ... Removing libk5crypto3:amd64 (1.21.3-5) ... Removing libkeyutils1:amd64 (1.6.3-6) ... Removing libkrb5support0:amd64 (1.21.3-5) ... Removing libldap2:amd64 (2.6.10+dfsg-1) ... Removing liblerc4:amd64 (4.0.0+ds-5) ... Removing libmariadb3:amd64 (1:11.8.3-1+b1) ... Removing libpng16-16t64:amd64 (1.6.50-1) ... Removing librav1e0.7:amd64 (0.7.1-9+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Removing libwebp7:amd64 (1.5.0-0.1) ... Removing libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Removing libxpm4:amd64 (1:3.5.17-1+b3) ... Removing libx11-6:amd64 (2:1.8.12-1) ... Removing libx11-data (2:1.8.12-1) ... Removing libxcb1:amd64 (1.17.0-2+b1) ... Removing libxau6:amd64 (1:1.0.11-1) ... Removing libxdmcp6:amd64 (1:1.1.5-1) ... Removing mariadb-common (1:11.8.3-1) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Removing mysql-common (5.8+1.1.1) ... Removing libheif1:amd64 (1.20.2-2) ... Removing libheif-plugin-libde265:amd64 (1.20.2-2) ... Removing libde265-0:amd64 (1.0.16-1) ... Removing libsharpyuv0:amd64 (1.5.0-0.1) ... Removing libheif-plugin-dav1d:amd64 (1.20.2-2) ... Removing libdav1d7:amd64 (1.5.1-1) ... Processing triggers for libc-bin (2.41-12) ... 0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-get', 'remove', '--allow-remove-essential', 'emboss-data', 'emboss-lib', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'libabsl20240722:amd64', 'libaom3:amd64', 'libavif16:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgav1-1:amd64', 'libgd3:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhpdf-2.3.0:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'libmariadb3:amd64', 'libpng16-16t64:amd64', 'libpq5:amd64', 'librav1e0.7:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsvtav1enc2:amd64', 'libtiff6:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxpm4:amd64', 'libyuv0:amd64', 'mariadb-common', 'mysql-common', 'emboss'] 0m29.2s INFO: Running scripts post_remove 0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_remove_exceptions'] 0m29.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_remove_exceptions'] 0m29.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'dpkg', '--purge', 'emboss-data', 'emboss-lib', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'libabsl20240722:amd64', 'libaom3:amd64', 'libavif16:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgav1-1:amd64', 'libgd3:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhpdf-2.3.0:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'libmariadb3:amd64', 'libpng16-16t64:amd64', 'libpq5:amd64', 'librav1e0.7:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsvtav1enc2:amd64', 'libtiff6:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxpm4:amd64', 'libyuv0:amd64', 'mariadb-common', 'mysql-common'] 0m29.3s DUMP: dpkg: warning: ignoring request to remove emboss-data which isn't installed dpkg: warning: ignoring request to remove emboss-lib which isn't installed (Reading database ... 4968 files and directories currently installed.) Purging configuration files for fontconfig-config (2.15.0-2.4) ... Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... dpkg: warning: ignoring request to remove libabsl20240722 which isn't installed dpkg: warning: ignoring request to remove libaom3 which isn't installed dpkg: warning: ignoring request to remove libavif16 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcom-err2 which isn't installed dpkg: warning: ignoring request to remove libdav1d7 which isn't installed dpkg: warning: ignoring request to remove libde265-0 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libgav1-1 which isn't installed dpkg: warning: ignoring request to remove libgd3 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-5) ... dpkg: warning: ignoring request to remove libheif-plugin-dav1d which isn't installed dpkg: warning: ignoring request to remove libheif-plugin-libde265 which isn't installed dpkg: warning: ignoring request to remove libheif1 which isn't installed dpkg: warning: ignoring request to remove libhpdf-2.3.0 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove libldap2 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove libmariadb3 which isn't installed dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed dpkg: warning: ignoring request to remove libpq5 which isn't installed dpkg: warning: ignoring request to remove librav1e0.7 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libsvtav1enc2 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxpm4 which isn't installed dpkg: warning: ignoring request to remove libyuv0 which isn't installed Purging configuration files for mariadb-common (1:11.8.3-1) ... Purging configuration files for mysql-common (5.8+1.1.1) ... 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'dpkg', '--purge', 'emboss-data', 'emboss-lib', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'libabsl20240722:amd64', 'libaom3:amd64', 'libavif16:amd64', 'libbrotli1:amd64', 'libcom-err2:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libgav1-1:amd64', 'libgd3:amd64', 'libgomp1:amd64', 'libgssapi-krb5-2:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhpdf-2.3.0:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'libmariadb3:amd64', 'libpng16-16t64:amd64', 'libpq5:amd64', 'librav1e0.7:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsvtav1enc2:amd64', 'libtiff6:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxpm4:amd64', 'libyuv0:amd64', 'mariadb-common', 'mysql-common'] 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'dpkg', '--purge', 'emboss'] 0m29.3s DUMP: dpkg: warning: ignoring request to remove emboss which isn't installed 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'dpkg', '--purge', 'emboss'] 0m29.3s INFO: Running scripts post_purge 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_purge_exceptions'] 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_purge_exceptions'] 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'dpkg', '--purge', '--pending'] 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'dpkg', '--purge', '--pending'] 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'dpkg', '--remove', '--pending'] 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'dpkg', '--remove', '--pending'] 0m29.3s INFO: Running scripts post_test 0m29.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_test_exceptions'] 0m29.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'tmp/scripts/post_test_exceptions'] 0m29.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu'] 0m29.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu'] 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'dpkg-divert', '--list'] 0m29.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'dpkg-divert', '--list'] 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-get', 'clean'] 0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu', 'apt-get', 'clean'] 0m29.6s DEBUG: Recording chroot state 0m30.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu/dev/shm'] 0m30.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu/dev/shm'] 0m30.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu/dev/console'] 0m30.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu/dev/console'] 0m30.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu/dev/ptmx'] 0m30.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu/dev/ptmx'] 0m30.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu/dev/pts'] 0m30.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu/dev/pts'] 0m30.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu/proc'] 0m30.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu/proc'] 0m30.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu'] 0m30.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpnkn5ldfu'] 0m30.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpnkn5ldfu 0m30.3s INFO: PASS: Upgrading between Debian distributions. 0m30.3s INFO: PASS: All tests. 0m30.3s INFO: piuparts run ends. ret=0 End: 2025-09-05 16:30:09 GMT