Start: 2025-10-01 16:06:58 GMT [stable] Package: gemmi-dev Source: gemmi Version: 0.6.5+ds-3 Installed-Size: 6001 Maintainer: Debichem Team Architecture: amd64 Depends: tao-pegtl-dev Description: library for structural biology Homepage: https://project-gemmi.github.io Description-md5: 483bc82fd12131306acb8c18ca7c71a4 Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/g/gemmi/gemmi-dev_0.6.5+ds-3_amd64.deb Size: 1137184 MD5sum: b0d45233aae908c17c884b1c397a679a SHA256: 783b93b3f5cd375c0ef9f77e614edf1e9f0816d3fc4d3f3c54ac8f2678e9f8bc [testing] Package: gemmi-dev Source: gemmi Version: 0.7.1+ds-1 Installed-Size: 6147 Maintainer: Debichem Team Architecture: amd64 Depends: tao-pegtl-dev Description: library for structural biology Homepage: https://project-gemmi.github.io Description-md5: 483bc82fd12131306acb8c18ca7c71a4 Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/g/gemmi/gemmi-dev_0.7.1+ds-1_amd64.deb Size: 1186312 MD5sum: befb3a90de1e204313b83338e9b8773a SHA256: e52de05dd14abde41a05a3a18a26315dfeaa2f8d5c4dbbf2085bc28cd301f614 [sid] Package: gemmi-dev Source: gemmi Version: 0.7.1+ds-2 Installed-Size: 6207 Maintainer: Debichem Team Architecture: amd64 Depends: tao-pegtl-dev Description: library for structural biology Homepage: https://project-gemmi.github.io Description-md5: 483bc82fd12131306acb8c18ca7c71a4 Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/g/gemmi/gemmi-dev_0.7.1+ds-2_amd64.deb Size: 1204812 MD5sum: 767d722cd0a2a6ab2d8944c442166ab3 SHA256: be9cde441210fbb45fa4278cac0adfa0deecf5cf13560ec3f085659aba88af09 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat --apt gemmi-dev=0.7.1+ds-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211856~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat --apt gemmi-dev=0.7.1+ds-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 6.1.0-40-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.153-1 (2025-09-20) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpmno3z2nh 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpmno3z2nh 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh/dev/ptmx'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh/dev/ptmx'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh/dev/console'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh/dev/console'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh/dev/shm'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh/dev/shm'] 0m0.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.2s DEBUG: Created policy-rc.d and chmodded it. 0m0.2s DEBUG: Created resolv.conf. 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpmno3z2nh/tmp/scripts/ 0m0.2s INFO: Running scripts post_chroot_unpack 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-get', 'update'] 0m0.7s DUMP: Hit:1 http://deb.debian.org/debian trixie InRelease Reading package lists... 0m0.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-get', 'update'] 0m0.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-get', '-yf', 'dist-upgrade'] 0m1.0s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m1.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-get', '-yf', 'dist-upgrade'] 0m1.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.2s DUMP: cc6be03135582e5dd4c9ee869186ad39 - 0m1.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.2s INFO: Running scripts post_setup 0m1.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_setup_dummy_users'] 0m1.6s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_setup_dummy_users'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_setup_forbid_home'] 0m1.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_setup_forbid_home'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_setup_force-unsafe-io'] 0m1.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_setup_force-unsafe-io'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_setup_minimize'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_setup_minimize'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_setup_squeeze-backports'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_setup_squeeze-backports'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_setup_zz_backports'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_setup_zz_backports'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m1.6s DUMP: install ok installed apt apt 3.0.3 install ok installed base-files base-files 13.8+deb13u1 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2+b5 install ok installed bsdutils bsdutils 1:2.41-5 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69~deb13u1 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.3 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.41-5 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-5 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41-5 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1~deb13u1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41-5 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-7 install ok installed libssl3t64:amd64 libssl3t64 3.5.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.8-1~deb13u1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.8-1~deb13u1 install ok installed libuuid1:amd64 libuuid1 2.41-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.41-5 install ok installed login.defs login.defs 1:4.17.4-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41-5 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.1-1 install ok installed passwd passwd 1:4.17.4-2 install ok installed perl-base perl-base 5.40.1-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-4+deb13u1 install ok installed util-linux util-linux 2.41-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m1.6s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat 0m1.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh'] 0m1.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh'] 0m1.9s INFO: Running scripts is_testable 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/is_testable_uninstallable'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/is_testable_uninstallable'] 0m1.9s INFO: Running scripts pre_test 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_test_exceptions'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_test_exceptions'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_test_root_password'] 0m1.9s DUMP: New password: Retype new password: passwd: password updated successfully 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_test_root_password'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-cache', 'show', '--no-all-versions', 'gemmi-dev'] 0m2.0s DUMP: Package: gemmi-dev Source: gemmi Version: 0.6.5+ds-3 Installed-Size: 6001 Maintainer: Debichem Team Architecture: amd64 Depends: tao-pegtl-dev Description-en: library for structural biology Library for macromolecular crystallography and structural bioinformatics. For working with coordinate files (mmCIF, PDB, mmJSON), refinement restraints (monomer library), electron density maps (CCP4), and crystallographic reflection data (MTZ, SF-mmCIF). It understands crystallographic symmetries, it knows how to switch between the real and reciprocal space and it can do a few other things. . This package contains header-only C++ library. Description-md5: 483bc82fd12131306acb8c18ca7c71a4 Homepage: https://project-gemmi.github.io Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/g/gemmi/gemmi-dev_0.6.5+ds-3_amd64.deb Size: 1137184 MD5sum: b0d45233aae908c17c884b1c397a679a SHA256: 783b93b3f5cd375c0ef9f77e614edf1e9f0816d3fc4d3f3c54ac8f2678e9f8bc 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-cache', 'show', '--no-all-versions', 'gemmi-dev'] 0m2.0s INFO: apt-cache knows about the following packages: gemmi-dev 0m2.0s INFO: Running scripts pre_install 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_database-server'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_database-server'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_exceptions'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_exceptions'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_extras'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_extras'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_foreign_architecture'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_foreign_architecture'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-cache', 'policy'] 0m2.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release v=13.1,o=Debian,a=stable,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-cache', 'policy'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-cache', 'policy', 'gemmi-dev'] 0m2.1s DUMP: gemmi-dev: Installed: (none) Candidate: 0.6.5+ds-3 Version table: 0.6.5+ds-3 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-cache', 'policy', 'gemmi-dev'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-get', '-y', 'install', 'gemmi-dev'] 0m3.0s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: tao-pegtl-dev The following NEW packages will be installed: gemmi-dev tao-pegtl-dev 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 1207 kB of archives. After this operation, 6739 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 tao-pegtl-dev all 3.2.7-1 [69.4 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 gemmi-dev amd64 0.6.5+ds-3 [1137 kB] Fetched 1207 kB in 0s (2850 kB/s) Selecting previously unselected package tao-pegtl-dev. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4939 files and directories currently installed.) Preparing to unpack .../tao-pegtl-dev_3.2.7-1_all.deb ... Unpacking tao-pegtl-dev (3.2.7-1) ... Selecting previously unselected package gemmi-dev. Preparing to unpack .../gemmi-dev_0.6.5+ds-3_amd64.deb ... Unpacking gemmi-dev (0.6.5+ds-3) ... Setting up tao-pegtl-dev (3.2.7-1) ... Setting up gemmi-dev (0.6.5+ds-3) ... 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-get', '-y', 'install', 'gemmi-dev'] 0m3.0s INFO: Running scripts post_install 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_install_exceptions'] 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_install_exceptions'] 0m3.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh'] 0m3.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh'] 0m3.2s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpmno3z2nh to testing 0m3.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m3.2s INFO: Running scripts pre_distupgrade 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_distupgrade_exceptions'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_distupgrade_exceptions'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-get', 'update'] 0m4.5s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [147 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [9748 kB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6488 kB] Fetched 16.4 MB in 1s (17.8 MB/s) Reading package lists... 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-get', 'update'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-get', '-yf', 'dist-upgrade'] 0m7.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: gcc-15-base The following packages will be upgraded: apt base-files bash bsdutils gcc-14-base gemmi-dev grep init-system-helpers libapt-pkg7.0 libaudit-common libaudit1 libblkid1 libgcc-s1 libgmp10 libhogweed6t64 liblastlog2-2 liblzma5 libmount1 libnettle8t64 libpcre2-8-0 libsmartcols1 libsqlite3-0 libssl3t64 libstdc++6 libsystemd0 libudev1 libuuid1 libzstd1 login login.defs mount openssl-provider-legacy passwd tzdata util-linux 35 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 17.4 MB of archives. After this operation, 930 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 base-files amd64 14 [72.9 kB] Get:2 http://deb.debian.org/debian forky/main amd64 bash amd64 5.3-1 [1556 kB] Get:3 http://deb.debian.org/debian forky/main amd64 grep amd64 3.12-1 [443 kB] Get:4 http://deb.debian.org/debian forky/main amd64 liblastlog2-2 amd64 2.41.2-1 [28.9 kB] Get:5 http://deb.debian.org/debian forky/main amd64 libuuid1 amd64 2.41.2-1 [38.1 kB] Get:6 http://deb.debian.org/debian forky/main amd64 bsdutils amd64 1:2.41.2-1 [93.4 kB] Get:7 http://deb.debian.org/debian forky/main amd64 libblkid1 amd64 2.41.2-1 [173 kB] Get:8 http://deb.debian.org/debian forky/main amd64 libmount1 amd64 2.41.2-1 [211 kB] Get:9 http://deb.debian.org/debian forky/main amd64 libsmartcols1 amd64 2.41.2-1 [144 kB] Get:10 http://deb.debian.org/debian forky/main amd64 util-linux amd64 2.41.2-1 [1257 kB] Get:11 http://deb.debian.org/debian forky/main amd64 mount amd64 2.41.2-1 [162 kB] Get:12 http://deb.debian.org/debian forky/main amd64 libsqlite3-0 amd64 3.46.1-8 [968 kB] Get:13 http://deb.debian.org/debian forky/main amd64 libsystemd0 amd64 258-1 [466 kB] Get:14 http://deb.debian.org/debian forky/main amd64 gcc-15-base amd64 15.2.0-4 [52.8 kB] Get:15 http://deb.debian.org/debian forky/main amd64 libgcc-s1 amd64 15.2.0-4 [71.7 kB] Get:16 http://deb.debian.org/debian forky/main amd64 liblzma5 amd64 5.8.1-1.1 [316 kB] Get:17 http://deb.debian.org/debian forky/main amd64 openssl-provider-legacy amd64 3.5.3-1 [308 kB] Get:18 http://deb.debian.org/debian forky/main amd64 libzstd1 amd64 1.5.7+dfsg-1.1 [320 kB] Get:19 http://deb.debian.org/debian forky/main amd64 libssl3t64 amd64 3.5.3-1 [2445 kB] Get:20 http://deb.debian.org/debian forky/main amd64 libstdc++6 amd64 15.2.0-4 [738 kB] Get:21 http://deb.debian.org/debian forky/main amd64 libudev1 amd64 258-1 [156 kB] Get:22 http://deb.debian.org/debian forky/main amd64 libapt-pkg7.0 amd64 3.1.5 [1182 kB] Get:23 http://deb.debian.org/debian forky/main amd64 apt amd64 3.1.5 [1479 kB] Get:24 http://deb.debian.org/debian forky/main amd64 init-system-helpers all 1.69 [39.3 kB] Get:25 http://deb.debian.org/debian forky/main amd64 libaudit-common all 1:4.1.2-1 [14.3 kB] Get:26 http://deb.debian.org/debian forky/main amd64 libaudit1 amd64 1:4.1.2-1 [60.4 kB] Get:27 http://deb.debian.org/debian forky/main amd64 login amd64 1:4.16.0-2+really2.41.2-1 [105 kB] Get:28 http://deb.debian.org/debian forky/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5 [574 kB] Get:29 http://deb.debian.org/debian forky/main amd64 libnettle8t64 amd64 3.10.2-1 [307 kB] Get:30 http://deb.debian.org/debian forky/main amd64 libhogweed6t64 amd64 3.10.2-1 [336 kB] Get:31 http://deb.debian.org/debian forky/main amd64 libpcre2-8-0 amd64 10.46-1 [298 kB] Get:32 http://deb.debian.org/debian forky/main amd64 login.defs all 1:4.18.0-1 [211 kB] Get:33 http://deb.debian.org/debian forky/main amd64 passwd amd64 1:4.18.0-1 [1284 kB] Get:34 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get:35 http://deb.debian.org/debian forky/main amd64 gcc-14-base amd64 14.3.0-8 [52.1 kB] Get:36 http://deb.debian.org/debian forky/main amd64 gemmi-dev amd64 0.7.1+ds-1 [1186 kB] Preconfiguring packages ... Fetched 17.4 MB in 0s (37.2 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5258 files and directories currently installed.) Preparing to unpack .../base-files_14_amd64.deb ... Unpacking base-files (14) over (13.8+deb13u1) ... Setting up base-files (14) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5264 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a4.1.2-1_all.deb ... Unpacking libaudit-common (1:4.1.2-1) over (1:4.0.2-2) ... Setting up libaudit-common (1:4.1.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5264 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.1.2-1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.1.2-1) over (1:4.0.2-2+b2) ... Setting up libaudit1:amd64 (1:4.1.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5263 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.41.2-1_amd64.deb ... Unpacking login (1:4.16.0-2+really2.41.2-1) over (1:4.16.0-2+really2.41-5) ... Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-5_amd64.deb ... Unpacking libgmp10:amd64 (2:6.3.0+dfsg-5) over (2:6.3.0+dfsg-3) ... Setting up libgmp10:amd64 (2:6.3.0+dfsg-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5255 files and directories currently installed.) Preparing to unpack .../libnettle8t64_3.10.2-1_amd64.deb ... Unpacking libnettle8t64:amd64 (3.10.2-1) over (3.10.1-1) ... Setting up libnettle8t64:amd64 (3.10.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5255 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.10.2-1_amd64.deb ... Unpacking libhogweed6t64:amd64 (3.10.2-1) over (3.10.1-1) ... Setting up libhogweed6t64:amd64 (3.10.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5255 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.46-1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.46-1) over (10.46-1~deb13u1) ... Setting up libpcre2-8-0:amd64 (10.46-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5255 files and directories currently installed.) Preparing to unpack .../login.defs_1%3a4.18.0-1_all.deb ... Unpacking login.defs (1:4.18.0-1) over (1:4.17.4-2) ... Preparing to unpack .../passwd_1%3a4.18.0-1_amd64.deb ... Unpacking passwd (1:4.18.0-1) over (1:4.17.4-2) ... Preparing to unpack .../tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) over (2025b-4+deb13u1) ... Preparing to unpack .../gcc-14-base_14.3.0-8_amd64.deb ... Unpacking gcc-14-base:amd64 (14.3.0-8) over (14.2.0-19) ... Preparing to unpack .../gemmi-dev_0.7.1+ds-1_amd64.deb ... Unpacking gemmi-dev (0.7.1+ds-1) over (0.6.5+ds-3) ... Setting up gcc-14-base:amd64 (14.3.0-8) ... Setting up login.defs (1:4.18.0-1) ... Setting up gemmi-dev (0.7.1+ds-1) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Oct 1 16:07:05 UTC 2025. Universal Time is now: Wed Oct 1 16:07:05 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up passwd (1:4.18.0-1) ... Setting up mount (2.41.2-1) ... Setting up login (1:4.16.0-2+really2.41.2-1) ... Processing triggers for debianutils (5.23.2) ... Processing triggers for libc-bin (2.41-12) ... 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-get', '-yf', 'dist-upgrade'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.8s DUMP: d56562971a3cdbe09a66a9cc84d2deab - 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-cache', 'show', '--no-all-versions', 'gemmi-dev'] 0m7.9s DUMP: Package: gemmi-dev Source: gemmi Version: 0.7.1+ds-1 Installed-Size: 6147 Maintainer: Debichem Team Architecture: amd64 Depends: tao-pegtl-dev Description-en: library for structural biology Library for macromolecular crystallography and structural bioinformatics. For working with coordinate files (mmCIF, PDB, mmJSON), refinement restraints (monomer library), electron density maps (CCP4), and crystallographic reflection data (MTZ, SF-mmCIF). It understands crystallographic symmetries, it knows how to switch between the real and reciprocal space and it can do a few other things. . This package contains header-only C++ library. Description-md5: 483bc82fd12131306acb8c18ca7c71a4 Homepage: https://project-gemmi.github.io Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/g/gemmi/gemmi-dev_0.7.1+ds-1_amd64.deb Size: 1186312 MD5sum: befb3a90de1e204313b83338e9b8773a SHA256: e52de05dd14abde41a05a3a18a26315dfeaa2f8d5c4dbbf2085bc28cd301f614 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-cache', 'show', '--no-all-versions', 'gemmi-dev'] 0m7.9s INFO: apt-cache knows about the following packages: gemmi-dev 0m7.9s INFO: Running scripts pre_install 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_database-server'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_database-server'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_exceptions'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_exceptions'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_extras'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_extras'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-cache', 'policy'] 0m8.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-cache', 'policy'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-cache', 'policy', 'gemmi-dev'] 0m8.0s DUMP: gemmi-dev: Installed: 0.7.1+ds-1 Candidate: 0.7.1+ds-1 Version table: *** 0.7.1+ds-1 500 500 http://deb.debian.org/debian forky/main amd64 Packages 100 /var/lib/dpkg/status 0m8.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-cache', 'policy', 'gemmi-dev'] 0m8.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-get', '-y', 'install', 'gemmi-dev'] 0m8.2s DUMP: Reading package lists... Building dependency tree... Reading state information... gemmi-dev is already the newest version (0.7.1+ds-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-get', '-y', 'install', 'gemmi-dev'] 0m8.2s INFO: Running scripts post_install 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_install_exceptions'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_install_exceptions'] 0m8.2s INFO: Running scripts post_distupgrade 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_distupgrade_exceptions'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_distupgrade_exceptions'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_distupgrade_zz_backports'] 0m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_distupgrade_zz_backports'] 0m8.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh'] 0m8.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh'] 0m8.4s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpmno3z2nh to sid 0m8.4s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m8.4s INFO: Running scripts pre_distupgrade 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-get', 'update'] 0m10.5s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [207 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.2 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7439 kB] Fetched 17.8 MB in 2s (11.4 MB/s) Reading package lists... 0m10.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-get', 'update'] 0m10.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-get', '-yf', 'dist-upgrade'] 0m12.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt bsdutils gemmi-dev libapt-pkg7.0 libblkid1 liblastlog2-2 libmount1 libsmartcols1 libssl3t64 libuuid1 login mount openssl-provider-legacy util-linux 14 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 8765 kB of archives. After this operation, 583 kB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.41.2-3 [38.4 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.41.2-3 [174 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.41.2-3 [211 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.41.2-3 [145 kB] Get:5 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.41.2-3 [1164 kB] Get:6 http://deb.debian.org/debian sid/main amd64 mount amd64 2.41.2-3 [163 kB] Get:7 http://deb.debian.org/debian sid/main amd64 openssl-provider-legacy amd64 3.5.4-1 [308 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.5.4-1 [2446 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libapt-pkg7.0 amd64 3.1.6 [1205 kB] Get:10 http://deb.debian.org/debian sid/main amd64 apt amd64 3.1.6 [1478 kB] Get:11 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.41.2-3 [105 kB] Get:12 http://deb.debian.org/debian sid/main amd64 liblastlog2-2 amd64 2.41.2-3 [29.3 kB] Get:13 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.41.2-3 [93.5 kB] Get:14 http://deb.debian.org/debian sid/main amd64 gemmi-dev amd64 0.7.1+ds-2 [1205 kB] Fetched 8765 kB in 0s (27.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5254 files and directories currently installed.) Preparing to unpack .../libuuid1_2.41.2-3_amd64.deb ... Unpacking libuuid1:amd64 (2.41.2-3) over (2.41.2-1) ... Setting up libuuid1:amd64 (2.41.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5254 files and directories currently installed.) Preparing to unpack .../libblkid1_2.41.2-3_amd64.deb ... Unpacking libblkid1:amd64 (2.41.2-3) over (2.41.2-1) ... Setting up libblkid1:amd64 (2.41.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5254 files and directories currently installed.) Preparing to unpack .../libmount1_2.41.2-3_amd64.deb ... Unpacking libmount1:amd64 (2.41.2-3) over (2.41.2-1) ... Setting up libmount1:amd64 (2.41.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5254 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.41.2-3_amd64.deb ... Unpacking libsmartcols1:amd64 (2.41.2-3) over (2.41.2-1) ... Setting up libsmartcols1:amd64 (2.41.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5254 files and directories currently installed.) Preparing to unpack .../util-linux_2.41.2-3_amd64.deb ... Unpacking util-linux (2.41.2-3) over (2.41.2-1) ... Setting up util-linux (2.41.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5219 files and directories currently installed.) Preparing to unpack .../mount_2.41.2-3_amd64.deb ... Unpacking mount (2.41.2-3) over (2.41.2-1) ... Preparing to unpack .../openssl-provider-legacy_3.5.4-1_amd64.deb ... Unpacking openssl-provider-legacy (3.5.4-1) over (3.5.3-1) ... Setting up openssl-provider-legacy (3.5.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5219 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.5.4-1_amd64.deb ... Unpacking libssl3t64:amd64 (3.5.4-1) over (3.5.3-1) ... Setting up libssl3t64:amd64 (3.5.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5219 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_3.1.6_amd64.deb ... Unpacking libapt-pkg7.0:amd64 (3.1.6) over (3.1.5) ... Setting up libapt-pkg7.0:amd64 (3.1.6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5219 files and directories currently installed.) Preparing to unpack .../archives/apt_3.1.6_amd64.deb ... Unpacking apt (3.1.6) over (3.1.5) ... Setting up apt (3.1.6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5219 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.41.2-3_amd64.deb ... Unpacking login (1:4.16.0-2+really2.41.2-3) over (1:4.16.0-2+really2.41.2-1) ... Preparing to unpack .../liblastlog2-2_2.41.2-3_amd64.deb ... Unpacking liblastlog2-2:amd64 (2.41.2-3) over (2.41.2-1) ... Setting up liblastlog2-2:amd64 (2.41.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5219 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.41.2-3_amd64.deb ... Unpacking bsdutils (1:2.41.2-3) over (1:2.41.2-1) ... Preparing to unpack .../gemmi-dev_0.7.1+ds-2_amd64.deb ... Unpacking gemmi-dev (0.7.1+ds-2) over (0.7.1+ds-1) ... Setting up bsdutils (1:2.41.2-3) ... Setting up gemmi-dev (0.7.1+ds-2) ... Setting up mount (2.41.2-3) ... Setting up login (1:4.16.0-2+really2.41.2-3) ... Processing triggers for libc-bin (2.41-12) ... 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-get', '-yf', 'dist-upgrade'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m12.7s DUMP: 5654153d0aca26d929c92da4fed816fe - 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-cache', 'show', '--no-all-versions', 'gemmi-dev'] 0m12.9s DUMP: Package: gemmi-dev Source: gemmi Version: 0.7.1+ds-2 Installed-Size: 6207 Maintainer: Debichem Team Architecture: amd64 Depends: tao-pegtl-dev Description-en: library for structural biology Library for macromolecular crystallography and structural bioinformatics. For working with coordinate files (mmCIF, PDB, mmJSON), refinement restraints (monomer library), electron density maps (CCP4), and crystallographic reflection data (MTZ, SF-mmCIF). It understands crystallographic symmetries, it knows how to switch between the real and reciprocal space and it can do a few other things. . This package contains header-only C++ library. Description-md5: 483bc82fd12131306acb8c18ca7c71a4 Homepage: https://project-gemmi.github.io Tag: devel::library, role::devel-lib Section: libdevel Priority: optional Filename: pool/main/g/gemmi/gemmi-dev_0.7.1+ds-2_amd64.deb Size: 1204812 MD5sum: 767d722cd0a2a6ab2d8944c442166ab3 SHA256: be9cde441210fbb45fa4278cac0adfa0deecf5cf13560ec3f085659aba88af09 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-cache', 'show', '--no-all-versions', 'gemmi-dev'] 0m12.9s INFO: apt-cache knows about the following packages: gemmi-dev 0m12.9s INFO: Running scripts pre_install 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_database-server'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_database-server'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_exceptions'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_exceptions'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_extras'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_extras'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-cache', 'policy'] 0m12.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-cache', 'policy'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-cache', 'policy', 'gemmi-dev'] 0m12.9s DUMP: gemmi-dev: Installed: 0.7.1+ds-2 Candidate: 0.7.1+ds-2 Version table: *** 0.7.1+ds-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-cache', 'policy', 'gemmi-dev'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-get', '-y', 'install', 'gemmi-dev'] 0m13.2s DUMP: Reading package lists... Building dependency tree... Reading state information... gemmi-dev is already the newest version (0.7.1+ds-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-get', '-y', 'install', 'gemmi-dev'] 0m13.2s INFO: Running scripts post_install 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_install_exceptions'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_install_exceptions'] 0m13.2s INFO: Running scripts post_distupgrade 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_distupgrade_exceptions'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_distupgrade_exceptions'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_distupgrade_zz_backports'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_distupgrade_zz_backports'] 0m13.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh'] 0m13.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh'] 0m13.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh'] 0m13.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh'] 0m13.6s INFO: Running scripts pre_install 0m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_database-server'] 0m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_database-server'] 0m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_exceptions'] 0m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_exceptions'] 0m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_extras'] 0m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_extras'] 0m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_foreign_architecture'] 0m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_foreign_architecture'] 0m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-cache', 'policy'] 0m13.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-cache', 'policy'] 0m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-cache', 'policy', 'gemmi-dev'] 0m13.6s DUMP: gemmi-dev: Installed: 0.7.1+ds-2 Candidate: 0.7.1+ds-2 Version table: *** 0.7.1+ds-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m13.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-cache', 'policy', 'gemmi-dev'] 0m13.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-get', '-y', 'install', 'gemmi-dev=0.7.1+ds-2'] 0m13.9s DUMP: Reading package lists... Building dependency tree... Reading state information... gemmi-dev is already the newest version (0.7.1+ds-2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-get', '-y', 'install', 'gemmi-dev=0.7.1+ds-2'] 0m13.9s INFO: Running scripts post_install 0m13.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_install_exceptions'] 0m13.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_install_exceptions'] 0m13.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh'] 0m14.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh'] 0m14.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', '-ac', '--ignore-obsolete'] 0m14.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', '-ac', '--ignore-obsolete'] 0m14.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m14.6s DUMP: 0.15.9~deb12u1 0m14.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m14.6s INFO: Running adequate version 0.15.9~deb12u1 now. 0m14.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'gemmi-dev'] 0m14.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'gemmi-dev'] 0m14.6s INFO: Running scripts pre_remove 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m14.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m14.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_remove_exceptions'] 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/pre_remove_exceptions'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m14.9s DUMP: install ok installed apt apt 3.1.6 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.3-1 install ok installed bsdutils bsdutils 1:2.41.2-3 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.3.0-8 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-4 install ok installed gemmi-dev gemmi-dev 0.7.1+ds-2 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.6 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1 install ok installed libblkid1:amd64 libblkid1 2.41.2-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-4 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.2-3 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1.1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.2-3 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.2-3 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-8 install ok installed libssl3t64:amd64 libssl3t64 3.5.4-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-4 install ok installed libsystemd0:amd64 libsystemd0 258-1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 258-1 install ok installed libuuid1:amd64 libuuid1 2.41.2-3 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1.1 install ok installed login login 1:4.16.0-2+really2.41.2-3 install ok installed login.defs login.defs 1:4.18.0-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41.2-3 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.4-1 install ok installed passwd passwd 1:4.18.0-1 install ok installed perl-base perl-base 5.40.1-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tao-pegtl-dev tao-pegtl-dev 3.2.7-1 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-5 install ok installed util-linux util-linux 2.41.2-3 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-get', 'remove', '--allow-remove-essential', 'tao-pegtl-dev', 'gemmi-dev'] 0m15.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: gemmi-dev tao-pegtl-dev 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. After this operation, 6950 kB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5219 files and directories currently installed.) Removing gemmi-dev (0.7.1+ds-2) ... Removing tao-pegtl-dev (3.2.7-1) ... 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-get', 'remove', '--allow-remove-essential', 'tao-pegtl-dev', 'gemmi-dev'] 0m15.3s INFO: Running scripts post_remove 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_remove_exceptions'] 0m15.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_remove_exceptions'] 0m15.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'dpkg', '--purge', 'tao-pegtl-dev'] 0m15.4s DUMP: dpkg: warning: ignoring request to remove tao-pegtl-dev which isn't installed 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'dpkg', '--purge', 'tao-pegtl-dev'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'dpkg', '--purge', 'gemmi-dev'] 0m15.4s DUMP: dpkg: warning: ignoring request to remove gemmi-dev which isn't installed 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'dpkg', '--purge', 'gemmi-dev'] 0m15.4s INFO: Running scripts post_purge 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_purge_exceptions'] 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_purge_exceptions'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'dpkg', '--purge', '--pending'] 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'dpkg', '--purge', '--pending'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'dpkg', '--remove', '--pending'] 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'dpkg', '--remove', '--pending'] 0m15.4s INFO: Running scripts post_test 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_test_exceptions'] 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'tmp/scripts/post_test_exceptions'] 0m15.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh'] 0m15.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh'] 0m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'dpkg-divert', '--list'] 0m15.6s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'dpkg-divert', '--list'] 0m15.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-get', 'clean'] 0m15.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh', 'apt-get', 'clean'] 0m15.6s DEBUG: Recording chroot state 0m16.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh/dev/shm'] 0m16.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh/dev/shm'] 0m16.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh/dev/console'] 0m16.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh/dev/console'] 0m16.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh/dev/ptmx'] 0m16.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh/dev/ptmx'] 0m16.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh/dev/pts'] 0m16.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh/dev/pts'] 0m16.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh/proc'] 0m16.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh/proc'] 0m16.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh'] 0m16.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpmno3z2nh'] 0m16.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpmno3z2nh 0m16.3s INFO: PASS: Upgrading between Debian distributions. 0m16.3s INFO: PASS: All tests. 0m16.3s INFO: piuparts run ends. ret=0 End: 2025-10-01 16:07:14 GMT