Start: 2025-09-12 03:45:37 GMT [stable] Package: libtfbs-perl Source: libtfbs-perl (0.7.1+ds-4) Version: 0.7.1+ds-4+b1 Installed-Size: 981 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.40.0-6), perlapi-5.40.0, pdl (>= 1:2.093-1+b1), pdlapi-20, libc6 (>= 2.38), bioperl, libwww-perl, libdbi-perl Recommends: libgd-gd2-perl | libgd-gd2-noxpm-perl Description: scanning DNA sequence with a position weight matrix Homepage: http://tfbs.genereg.net Description-md5: 329310953f967bb54344ec3b1c418600 Tag: devel::lang:perl, devel::library, field::biology, field::biology:bioinformatics, implemented-in::c, implemented-in::perl, interface::commandline, role::devel-lib, role::program Section: perl Priority: optional Filename: pool/main/libt/libtfbs-perl/libtfbs-perl_0.7.1+ds-4+b1_amd64.deb Size: 221608 MD5sum: 7292d9f83e62d69aa09181f7999d825b SHA256: c90035c3c6a0544a25c8b4eb19f344568c9b0379a36287c263038d4bbc5c473e [testing] Package: libtfbs-perl Source: libtfbs-perl (0.7.1+ds-4) Version: 0.7.1+ds-4+b1 Installed-Size: 981 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.40.0-6), perlapi-5.40.0, pdl (>= 1:2.093-1+b1), pdlapi-20, libc6 (>= 2.38), bioperl, libwww-perl, libdbi-perl Recommends: libgd-gd2-perl | libgd-gd2-noxpm-perl Description: scanning DNA sequence with a position weight matrix Homepage: http://tfbs.genereg.net Description-md5: 329310953f967bb54344ec3b1c418600 Tag: devel::lang:perl, devel::library, field::biology, field::biology:bioinformatics, implemented-in::c, implemented-in::perl, interface::commandline, role::devel-lib, role::program Section: perl Priority: optional Filename: pool/main/libt/libtfbs-perl/libtfbs-perl_0.7.1+ds-4+b1_amd64.deb Size: 221608 MD5sum: 7292d9f83e62d69aa09181f7999d825b SHA256: c90035c3c6a0544a25c8b4eb19f344568c9b0379a36287c263038d4bbc5c473e [sid] Package: libtfbs-perl Version: 0.7.1+ds-5 Installed-Size: 984 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.40.1-6), perlapi-5.40.1, pdl (>= 1:2.100-1), pdlapi-20, libc6 (>= 2.38), bioperl, libwww-perl, libdbi-perl Recommends: libgd-gd2-perl | libgd-gd2-noxpm-perl Description: scanning DNA sequence with a position weight matrix Homepage: http://tfbs.genereg.net Description-md5: 329310953f967bb54344ec3b1c418600 Tag: devel::lang:perl, devel::library, field::biology, field::biology:bioinformatics, implemented-in::c, implemented-in::perl, interface::commandline, role::devel-lib, role::program Section: perl Priority: optional Filename: pool/main/libt/libtfbs-perl/libtfbs-perl_0.7.1+ds-5_amd64.deb Size: 224412 MD5sum: 81cde2058eb5717d3567fccb5c4ea1a9 SHA256: 1f65105793f66bb3dfb6e336ce3d0e41a1b0ee46f776b4006af46ee47c51845a Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat --apt libtfbs-perl=0.7.1+ds-5 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211856~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat --apt libtfbs-perl=0.7.1+ds-5 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 6.1.0-39-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.148-1 (2025-08-26) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpj9hhod_s 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpj9hhod_s 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s/dev/ptmx'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s/dev/ptmx'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s/dev/console'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s/dev/console'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s/dev/shm'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s/dev/shm'] 0m0.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.2s DEBUG: Created policy-rc.d and chmodded it. 0m0.2s DEBUG: Created resolv.conf. 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpj9hhod_s/tmp/scripts/ 0m0.2s INFO: Running scripts post_chroot_unpack 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-get', 'update'] 0m0.7s DUMP: Hit:1 http://deb.debian.org/debian trixie InRelease Reading package lists... 0m0.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-get', 'update'] 0m0.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-get', '-yf', 'dist-upgrade'] 0m1.0s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m1.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-get', '-yf', 'dist-upgrade'] 0m1.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.2s DUMP: cc6be03135582e5dd4c9ee869186ad39 - 0m1.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.2s INFO: Running scripts post_setup 0m1.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_setup_dummy_users'] 0m1.6s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_setup_dummy_users'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_setup_forbid_home'] 0m1.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_setup_forbid_home'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_setup_force-unsafe-io'] 0m1.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_setup_force-unsafe-io'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_setup_minimize'] 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_setup_minimize'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_setup_squeeze-backports'] 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_setup_squeeze-backports'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_setup_zz_backports'] 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_setup_zz_backports'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m1.7s DUMP: install ok installed apt apt 3.0.3 install ok installed base-files base-files 13.8+deb13u1 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2+b5 install ok installed bsdutils bsdutils 1:2.41-5 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69~deb13u1 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.3 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.41-5 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-5 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41-5 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1~deb13u1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41-5 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-7 install ok installed libssl3t64:amd64 libssl3t64 3.5.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.8-1~deb13u1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.8-1~deb13u1 install ok installed libuuid1:amd64 libuuid1 2.41-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.41-5 install ok installed login.defs login.defs 1:4.17.4-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41-5 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.1-1 install ok installed passwd passwd 1:4.17.4-2 install ok installed perl-base perl-base 5.40.1-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-4+deb13u1 install ok installed util-linux util-linux 2.41-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m1.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat 0m1.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s'] 0m1.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s'] 0m1.9s INFO: Running scripts is_testable 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/is_testable_uninstallable'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/is_testable_uninstallable'] 0m1.9s INFO: Running scripts pre_test 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_test_exceptions'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_test_exceptions'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_test_root_password'] 0m1.9s DUMP: New password: Retype new password: passwd: password updated successfully 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_test_root_password'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-cache', 'show', '--no-all-versions', 'libtfbs-perl'] 0m2.1s DUMP: Package: libtfbs-perl Source: libtfbs-perl (0.7.1+ds-4) Version: 0.7.1+ds-4+b1 Installed-Size: 981 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.40.0-6), perlapi-5.40.0, pdl (>= 1:2.093-1+b1), pdlapi-20, libc6 (>= 2.38), bioperl, libwww-perl, libdbi-perl Recommends: libgd-gd2-perl | libgd-gd2-noxpm-perl Description-en: scanning DNA sequence with a position weight matrix The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences. . If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136". . Note: the TFBS perl module is no longer under active development. All the functionality can be found in the TFBSTools Bioconductor package; users are highly encouraged to switch. Description-md5: 329310953f967bb54344ec3b1c418600 Homepage: http://tfbs.genereg.net Tag: devel::lang:perl, devel::library, field::biology, field::biology:bioinformatics, implemented-in::c, implemented-in::perl, interface::commandline, role::devel-lib, role::program Section: perl Priority: optional Filename: pool/main/libt/libtfbs-perl/libtfbs-perl_0.7.1+ds-4+b1_amd64.deb Size: 221608 MD5sum: 7292d9f83e62d69aa09181f7999d825b SHA256: c90035c3c6a0544a25c8b4eb19f344568c9b0379a36287c263038d4bbc5c473e 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-cache', 'show', '--no-all-versions', 'libtfbs-perl'] 0m2.1s INFO: apt-cache knows about the following packages: libtfbs-perl 0m2.1s INFO: Running scripts pre_install 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_database-server'] 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_database-server'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_exceptions'] 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_exceptions'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_extras'] 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_extras'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_foreign_architecture'] 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_foreign_architecture'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-cache', 'policy'] 0m2.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release v=13.1,o=Debian,a=stable,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-cache', 'policy'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-cache', 'policy', 'libtfbs-perl'] 0m2.1s DUMP: libtfbs-perl: Installed: (none) Candidate: 0.7.1+ds-4+b1 Version table: 0.7.1+ds-4+b1 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-cache', 'policy', 'libtfbs-perl'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-get', '-y', 'install', 'libtfbs-perl'] 0m7.3s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: bioperl ca-certificates libalgorithm-diff-perl libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl libclone-perl libdata-stag-perl libdbi-perl libdebhelper-perl libdevel-stacktrace-perl libencode-locale-perl libexception-class-perl libfile-listing-perl libfile-map-perl libfile-which-perl libgdbm-compat4t64 libgdbm6t64 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libperl5.40 libpod-parser-perl libsub-exporter-progressive-perl libsub-uplevel-perl libterm-readkey-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtimedate-perl libtry-tiny-perl liburi-perl libwww-perl libwww-robotrules-perl netbase openssl pdl perl perl-modules-5.40 perl-openssl-defaults sensible-utils Suggested packages: groff-base libxml-sax-expatxs-perl libmldbm-perl libnet-daemon-perl libsql-statement-perl gdbm-l10n libdata-dump-perl libcrypt-ssleay-perl libsub-name-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl doc-base libastro-fits-header-perl libinline-perl libinline-c-perl libmodule-compile-perl perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl debhelper Recommended packages: bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl libgd-gd2-perl libapache-dbi-perl libxml-simple-perl libyaml-perl libace-perl liblist-moreutils-perl libxml-twig-perl libset-scalar-perl libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl libpostscript-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-writer-perl libxml-libxml-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libhtml-format-perl libio-compress-brotli-perl libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libpdl-filter-perl libpdl-fit-perl libpdl-io-dicom-perl libpdl-io-envi-perl libpdl-io-gd-perl libpdl-io-hdf-perl libpdl-io-idl-perl libpdl-graphics-trid-perl libpdl-gsl-perl libpdl-opt-simplex-perl libpdl-transform-proj4-perl libterm-readline-gnu-perl | libterm-readline-perl-perl The following NEW packages will be installed: bioperl ca-certificates libalgorithm-diff-perl libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl libclone-perl libdata-stag-perl libdbi-perl libdebhelper-perl libdevel-stacktrace-perl libencode-locale-perl libexception-class-perl libfile-listing-perl libfile-map-perl libfile-which-perl libgdbm-compat4t64 libgdbm6t64 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libperl5.40 libpod-parser-perl libsub-exporter-progressive-perl libsub-uplevel-perl libterm-readkey-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtfbs-perl libtimedate-perl libtry-tiny-perl liburi-perl libwww-perl libwww-robotrules-perl netbase openssl pdl perl perl-modules-5.40 perl-openssl-defaults sensible-utils 0 upgraded, 56 newly installed, 0 to remove and 0 not upgraded. Need to get 19.0 MB of archives. After this operation, 87.3 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 netbase all 6.5 [12.4 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.5.1-1 [1494 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20250419 [162 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 perl-modules-5.40 all 5.40.1-6 [3019 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libperl5.40 amd64 5.40.1-6 [4341 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 perl amd64 5.40.1-6 [267 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:14 http://deb.debian.org/debian trixie/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 libtest-deep-perl all 1.205-1 [52.3 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 libtest-differences-perl all 0.71-1 [17.9 kB] Get:21 http://deb.debian.org/debian trixie/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get:22 http://deb.debian.org/debian trixie/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get:23 http://deb.debian.org/debian trixie/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB] Get:24 http://deb.debian.org/debian trixie/main amd64 libtest-most-perl all 0.38-1 [25.1 kB] Get:25 http://deb.debian.org/debian trixie/main amd64 bioperl all 1.7.8-1 [246 kB] Get:26 http://deb.debian.org/debian trixie/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB] Get:27 http://deb.debian.org/debian trixie/main amd64 libdbi-perl amd64 1.647-1 [861 kB] Get:28 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get:29 http://deb.debian.org/debian trixie/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:30 http://deb.debian.org/debian trixie/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:31 http://deb.debian.org/debian trixie/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:32 http://deb.debian.org/debian trixie/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:33 http://deb.debian.org/debian trixie/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:34 http://deb.debian.org/debian trixie/main amd64 libfile-map-perl amd64 0.71-2 [29.4 kB] Get:35 http://deb.debian.org/debian trixie/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:36 http://deb.debian.org/debian trixie/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:37 http://deb.debian.org/debian trixie/main amd64 liburi-perl all 5.30-1 [105 kB] Get:38 http://deb.debian.org/debian trixie/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB] Get:39 http://deb.debian.org/debian trixie/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:40 http://deb.debian.org/debian trixie/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:41 http://deb.debian.org/debian trixie/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:42 http://deb.debian.org/debian trixie/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get:43 http://deb.debian.org/debian trixie/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:44 http://deb.debian.org/debian trixie/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:45 http://deb.debian.org/debian trixie/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:46 http://deb.debian.org/debian trixie/main amd64 libnet-ssleay-perl amd64 1.94-3 [339 kB] Get:47 http://deb.debian.org/debian trixie/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get:48 http://deb.debian.org/debian trixie/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:49 http://deb.debian.org/debian trixie/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:50 http://deb.debian.org/debian trixie/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:51 http://deb.debian.org/debian trixie/main amd64 libwww-perl all 6.78-1 [183 kB] Get:52 http://deb.debian.org/debian trixie/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:53 http://deb.debian.org/debian trixie/main amd64 libpod-parser-perl all 1.67-1 [94.1 kB] Get:54 http://deb.debian.org/debian trixie/main amd64 libterm-readkey-perl amd64 2.38-2+b4 [24.6 kB] Get:55 http://deb.debian.org/debian trixie/main amd64 pdl amd64 1:2.100-1 [3128 kB] Get:56 http://deb.debian.org/debian trixie/main amd64 libtfbs-perl amd64 0.7.1+ds-4+b1 [222 kB] Preconfiguring packages ... Fetched 19.0 MB in 2s (11.1 MB/s) Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4939 files and directories currently installed.) Preparing to unpack .../00-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.5.1-1_amd64.deb ... Unpacking openssl (3.5.1-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package perl-modules-5.40. Preparing to unpack .../04-perl-modules-5.40_5.40.1-6_all.deb ... Unpacking perl-modules-5.40 (5.40.1-6) ... Selecting previously unselected package libgdbm6t64:amd64. Preparing to unpack .../05-libgdbm6t64_1.24-2_amd64.deb ... Unpacking libgdbm6t64:amd64 (1.24-2) ... Selecting previously unselected package libgdbm-compat4t64:amd64. Preparing to unpack .../06-libgdbm-compat4t64_1.24-2_amd64.deb ... Unpacking libgdbm-compat4t64:amd64 (1.24-2) ... Selecting previously unselected package libperl5.40:amd64. Preparing to unpack .../07-libperl5.40_5.40.1-6_amd64.deb ... Unpacking libperl5.40:amd64 (5.40.1-6) ... Selecting previously unselected package perl. 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Preparing to unpack .../36-liburi-perl_5.30-1_all.deb ... Unpacking liburi-perl (5.30-1) ... Selecting previously unselected package libhtml-parser-perl:amd64. Preparing to unpack .../37-libhtml-parser-perl_3.83-1+b2_amd64.deb ... Unpacking libhtml-parser-perl:amd64 (3.83-1+b2) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../38-libhtml-tree-perl_5.07-3_all.deb ... Unpacking libhtml-tree-perl (5.07-3) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../39-libio-html-perl_1.004-3_all.deb ... Unpacking libio-html-perl (1.004-3) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../40-liblwp-mediatypes-perl_6.04-2_all.deb ... Unpacking liblwp-mediatypes-perl (6.04-2) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../41-libhttp-message-perl_7.00-2_all.deb ... Unpacking libhttp-message-perl (7.00-2) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../42-libhttp-cookies-perl_6.11-1_all.deb ... Unpacking libhttp-cookies-perl (6.11-1) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../43-libhttp-negotiate-perl_6.01-2_all.deb ... Unpacking libhttp-negotiate-perl (6.01-2) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../44-perl-openssl-defaults_7+b2_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (7+b2) ... Selecting previously unselected package libnet-ssleay-perl:amd64. Preparing to unpack .../45-libnet-ssleay-perl_1.94-3_amd64.deb ... Unpacking libnet-ssleay-perl:amd64 (1.94-3) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../46-libio-socket-ssl-perl_2.089-1_all.deb ... Unpacking libio-socket-ssl-perl (2.089-1) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../47-libnet-http-perl_6.23-1_all.deb ... Unpacking libnet-http-perl (6.23-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../48-libtry-tiny-perl_0.32-1_all.deb ... Unpacking libtry-tiny-perl (0.32-1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../49-libwww-robotrules-perl_6.02-1_all.deb ... Unpacking libwww-robotrules-perl (6.02-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../50-libwww-perl_6.78-1_all.deb ... Unpacking libwww-perl (6.78-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../51-liblwp-protocol-https-perl_6.14-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.14-1) ... Selecting previously unselected package libpod-parser-perl. Preparing to unpack .../52-libpod-parser-perl_1.67-1_all.deb ... Adding 'diversion of /usr/bin/podselect to /usr/bin/podselect.bundled by libpod-parser-perl' Adding 'diversion of /usr/share/man/man1/podselect.1.gz to /usr/share/man/man1/podselect.bundled.1.gz by libpod-parser-perl' Unpacking libpod-parser-perl (1.67-1) ... Selecting previously unselected package libterm-readkey-perl. Preparing to unpack .../53-libterm-readkey-perl_2.38-2+b4_amd64.deb ... Unpacking libterm-readkey-perl (2.38-2+b4) ... Selecting previously unselected package pdl. Preparing to unpack .../54-pdl_1%3a2.100-1_amd64.deb ... Unpacking pdl (1:2.100-1) ... Selecting previously unselected package libtfbs-perl. Preparing to unpack .../55-libtfbs-perl_0.7.1+ds-4+b1_amd64.deb ... Unpacking libtfbs-perl (0.7.1+ds-4+b1) ... Setting up libgdbm6t64:amd64 (1.24-2) ... Setting up libgdbm-compat4t64:amd64 (1.24-2) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up perl-modules-5.40 (5.40.1-6) ... Setting up sensible-utils (0.0.25) ... Setting up netbase (6.5) ... Setting up openssl (3.5.1-1) ... Setting up libperl5.40:amd64 (5.40.1-6) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up perl (5.40.1-6) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libpod-parser-perl (1.67-1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.50-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libterm-readkey-perl (2.38-2+b4) ... Setting up liburi-perl (5.30-1) ... Setting up libdbi-perl:amd64 (1.647-1) ... Setting up libnet-ssleay-perl:amd64 (1.94-3) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-which-perl (1.27-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtest-deep-perl (1.205-1) ... Setting up libclone-perl:amd64 (0.47-1+b1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libexception-class-perl (1.45-1) ... Setting up libio-string-perl (1.08-4) ... Setting up libtest-exception-perl (0.43-3) ... Setting up libtext-diff-perl (1.45-2) ... Setting up libfile-map-perl (0.71-2) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libtest-differences-perl (0.71-1) ... Setting up pdl (1:2.100-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up bioperl (1.7.8-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.78-1) ... Setting up libtfbs-perl (0.7.1+ds-4+b1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-get', '-y', 'install', 'libtfbs-perl'] 0m7.3s INFO: Running scripts post_install 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_install_exceptions'] 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_install_exceptions'] 0m7.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s'] 0m7.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s'] 0m7.7s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpj9hhod_s to testing 0m7.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m7.7s INFO: Running scripts pre_distupgrade 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_distupgrade_exceptions'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_distupgrade_exceptions'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-get', 'update'] 0m9.2s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [146 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [9800 kB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6540 kB] Fetched 16.5 MB in 1s (16.1 MB/s) Reading package lists... 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-get', 'update'] 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-get', '-yf', 'dist-upgrade'] 0m12.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: gcc-15-base The following packages will be upgraded: apt base-files bash bioperl bsdutils gcc-14-base init-system-helpers libapt-pkg7.0 libaudit-common libaudit1 libbio-perl-perl libblkid1 libdebhelper-perl libgcc-s1 libgdbm-compat4t64 libgdbm6t64 libgmp10 libio-socket-ssl-perl liblastlog2-2 liblzma5 libmount1 libpcre2-8-0 libsmartcols1 libssl3t64 libstdc++6 libsystemd0 libudev1 libuuid1 libzstd1 login login.defs mount openssl openssl-provider-legacy passwd sensible-utils tzdata util-linux 38 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 18.9 MB of archives. After this operation, 611 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 base-files amd64 14 [72.9 kB] Get:2 http://deb.debian.org/debian forky/main amd64 bash amd64 5.3-1 [1556 kB] Get:3 http://deb.debian.org/debian forky/main amd64 bsdutils amd64 1:2.41.1-2 [110 kB] Get:4 http://deb.debian.org/debian forky/main amd64 liblastlog2-2 amd64 2.41.1-2 [28.6 kB] Get:5 http://deb.debian.org/debian forky/main amd64 libuuid1 amd64 2.41.1-2 [37.8 kB] Get:6 http://deb.debian.org/debian forky/main amd64 libblkid1 amd64 2.41.1-2 [171 kB] Get:7 http://deb.debian.org/debian forky/main amd64 libmount1 amd64 2.41.1-2 [209 kB] Get:8 http://deb.debian.org/debian forky/main amd64 libsmartcols1 amd64 2.41.1-2 [143 kB] Get:9 http://deb.debian.org/debian forky/main amd64 util-linux amd64 2.41.1-2 [1236 kB] Get:10 http://deb.debian.org/debian forky/main amd64 mount amd64 2.41.1-2 [162 kB] Get:11 http://deb.debian.org/debian forky/main amd64 gcc-15-base amd64 15.2.0-3 [52.5 kB] Get:12 http://deb.debian.org/debian forky/main amd64 libgcc-s1 amd64 15.2.0-3 [75.4 kB] Get:13 http://deb.debian.org/debian forky/main amd64 liblzma5 amd64 5.8.1-1.1 [316 kB] Get:14 http://deb.debian.org/debian forky/main amd64 openssl-provider-legacy amd64 3.5.2-1 [307 kB] Get:15 http://deb.debian.org/debian forky/main amd64 libzstd1 amd64 1.5.7+dfsg-1.1 [320 kB] Get:16 http://deb.debian.org/debian forky/main amd64 libssl3t64 amd64 3.5.2-1 [2438 kB] Get:17 http://deb.debian.org/debian forky/main amd64 libstdc++6 amd64 15.2.0-3 [737 kB] Get:18 http://deb.debian.org/debian forky/main amd64 libsystemd0 amd64 258~rc4-1 [465 kB] Get:19 http://deb.debian.org/debian forky/main amd64 libudev1 amd64 258~rc4-1 [156 kB] Get:20 http://deb.debian.org/debian forky/main amd64 libapt-pkg7.0 amd64 3.1.5 [1182 kB] Get:21 http://deb.debian.org/debian forky/main amd64 apt amd64 3.1.5 [1479 kB] Get:22 http://deb.debian.org/debian forky/main amd64 init-system-helpers all 1.69 [39.3 kB] Get:23 http://deb.debian.org/debian forky/main amd64 libaudit-common all 1:4.1.1-1 [14.0 kB] Get:24 http://deb.debian.org/debian forky/main amd64 libaudit1 amd64 1:4.1.1-1 [61.6 kB] Get:25 http://deb.debian.org/debian forky/main amd64 login amd64 1:4.16.0-2+really2.41.1-2 [115 kB] Get:26 http://deb.debian.org/debian forky/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5 [574 kB] Get:27 http://deb.debian.org/debian forky/main amd64 libpcre2-8-0 amd64 10.46-1 [298 kB] Get:28 http://deb.debian.org/debian forky/main amd64 login.defs all 1:4.18.0-1 [211 kB] Get:29 http://deb.debian.org/debian forky/main amd64 passwd amd64 1:4.18.0-1 [1284 kB] Get:30 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get:31 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:32 http://deb.debian.org/debian forky/main amd64 bioperl all 1.7.8-2 [231 kB] Get:33 http://deb.debian.org/debian forky/main amd64 libbio-perl-perl all 1.7.8-2 [2498 kB] Get:34 http://deb.debian.org/debian forky/main amd64 gcc-14-base amd64 14.3.0-7 [52.0 kB] Get:35 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get:36 http://deb.debian.org/debian forky/main amd64 libgdbm6t64 amd64 1.26-1 [78.5 kB] Get:37 http://deb.debian.org/debian forky/main amd64 libgdbm-compat4t64 amd64 1.26-1 [52.8 kB] Get:38 http://deb.debian.org/debian forky/main amd64 libio-socket-ssl-perl all 2.095-1 [226 kB] Get:39 http://deb.debian.org/debian forky/main amd64 openssl amd64 3.5.2-1 [1493 kB] Preconfiguring packages ... Fetched 18.9 MB in 1s (36.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10451 files and directories currently installed.) Preparing to unpack .../base-files_14_amd64.deb ... Unpacking base-files (14) over (13.8+deb13u1) ... Setting up base-files (14) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10457 files and directories currently installed.) Preparing to unpack .../libstdc++6_15.2.0-3_amd64.deb ... Unpacking libstdc++6:amd64 (15.2.0-3) over (14.2.0-19) ... Setting up libstdc++6:amd64 (15.2.0-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10457 files and directories currently installed.) Preparing to unpack .../libsystemd0_258~rc4-1_amd64.deb ... Unpacking libsystemd0:amd64 (258~rc4-1) over (257.8-1~deb13u1) ... Setting up libsystemd0:amd64 (258~rc4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10457 files and directories currently installed.) Preparing to unpack .../libudev1_258~rc4-1_amd64.deb ... Unpacking libudev1:amd64 (258~rc4-1) over (257.8-1~deb13u1) ... Setting up libudev1:amd64 (258~rc4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10457 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_3.1.5_amd64.deb ... Unpacking libapt-pkg7.0:amd64 (3.1.5) over (3.0.3) ... Setting up libapt-pkg7.0:amd64 (3.1.5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10457 files and directories currently installed.) Preparing to unpack .../archives/apt_3.1.5_amd64.deb ... Unpacking apt (3.1.5) over (3.0.3) ... Setting up apt (3.1.5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10455 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.69_all.deb ... Unpacking init-system-helpers (1.69) over (1.69~deb13u1) ... Setting up init-system-helpers (1.69) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10455 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a4.1.1-1_all.deb ... Unpacking libaudit-common (1:4.1.1-1) over (1:4.0.2-2) ... Setting up libaudit-common (1:4.1.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10455 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.1.1-1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.1.1-1) over (1:4.0.2-2+b2) ... Setting up libaudit1:amd64 (1:4.1.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10454 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.41.1-2_amd64.deb ... Unpacking login (1:4.16.0-2+really2.41.1-2) over (1:4.16.0-2+really2.41-5) ... Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-5_amd64.deb ... Unpacking libgmp10:amd64 (2:6.3.0+dfsg-5) over (2:6.3.0+dfsg-3) ... Setting up libgmp10:amd64 (2:6.3.0+dfsg-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10457 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.46-1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.46-1) over (10.46-1~deb13u1) ... Setting up libpcre2-8-0:amd64 (10.46-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10457 files and directories currently installed.) Preparing to unpack .../00-login.defs_1%3a4.18.0-1_all.deb ... Unpacking login.defs (1:4.18.0-1) over (1:4.17.4-2) ... Preparing to unpack .../01-passwd_1%3a4.18.0-1_amd64.deb ... Unpacking passwd (1:4.18.0-1) over (1:4.17.4-2) ... Preparing to unpack .../02-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) over (2025b-4+deb13u1) ... Preparing to unpack .../03-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) over (0.0.25) ... Preparing to unpack .../04-bioperl_1.7.8-2_all.deb ... Unpacking bioperl (1.7.8-2) over (1.7.8-1) ... Preparing to unpack .../05-libbio-perl-perl_1.7.8-2_all.deb ... Unpacking libbio-perl-perl (1.7.8-2) over (1.7.8-1) ... Preparing to unpack .../06-gcc-14-base_14.3.0-7_amd64.deb ... Unpacking gcc-14-base:amd64 (14.3.0-7) over (14.2.0-19) ... Preparing to unpack .../07-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) over (13.24.2) ... Preparing to unpack .../08-libgdbm6t64_1.26-1_amd64.deb ... Unpacking libgdbm6t64:amd64 (1.26-1) over (1.24-2) ... Preparing to unpack .../09-libgdbm-compat4t64_1.26-1_amd64.deb ... Unpacking libgdbm-compat4t64:amd64 (1.26-1) over (1.24-2) ... Preparing to unpack .../10-libio-socket-ssl-perl_2.095-1_all.deb ... Unpacking libio-socket-ssl-perl (2.095-1) over (2.089-1) ... Preparing to unpack .../11-openssl_3.5.2-1_amd64.deb ... Unpacking openssl (3.5.2-1) over (3.5.1-1) ... Setting up libgdbm6t64:amd64 (1.26-1) ... Setting up libgdbm-compat4t64:amd64 (1.26-1) ... Setting up gcc-14-base:amd64 (14.3.0-7) ... Setting up login.defs (1:4.18.0-1) ... Setting up libdebhelper-perl (13.26) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Sep 12 03:45:49 UTC 2025. Universal Time is now: Fri Sep 12 03:45:49 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up passwd (1:4.18.0-1) ... Setting up mount (2.41.1-2) ... Setting up sensible-utils (0.0.26) ... Setting up libbio-perl-perl (1.7.8-2) ... Setting up openssl (3.5.2-1) ... Setting up libio-socket-ssl-perl (2.095-1) ... Setting up login (1:4.16.0-2+really2.41.1-2) ... Setting up bioperl (1.7.8-2) ... Processing triggers for debianutils (5.23.2) ... Processing triggers for libc-bin (2.41-12) ... 0m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-get', '-yf', 'dist-upgrade'] 0m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m12.7s DUMP: ec91478736d000bd647d115dbcd44f87 - 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-cache', 'show', '--no-all-versions', 'libtfbs-perl'] 0m12.8s DUMP: Package: libtfbs-perl Source: libtfbs-perl (0.7.1+ds-4) Version: 0.7.1+ds-4+b1 Installed-Size: 981 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.40.0-6), perlapi-5.40.0, pdl (>= 1:2.093-1+b1), pdlapi-20, libc6 (>= 2.38), bioperl, libwww-perl, libdbi-perl Recommends: libgd-gd2-perl | libgd-gd2-noxpm-perl Description-en: scanning DNA sequence with a position weight matrix The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences. . If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136". . Note: the TFBS perl module is no longer under active development. All the functionality can be found in the TFBSTools Bioconductor package; users are highly encouraged to switch. Description-md5: 329310953f967bb54344ec3b1c418600 Homepage: http://tfbs.genereg.net Tag: devel::lang:perl, devel::library, field::biology, field::biology:bioinformatics, implemented-in::c, implemented-in::perl, interface::commandline, role::devel-lib, role::program Section: perl Priority: optional Filename: pool/main/libt/libtfbs-perl/libtfbs-perl_0.7.1+ds-4+b1_amd64.deb Size: 221608 MD5sum: 7292d9f83e62d69aa09181f7999d825b SHA256: c90035c3c6a0544a25c8b4eb19f344568c9b0379a36287c263038d4bbc5c473e 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-cache', 'show', '--no-all-versions', 'libtfbs-perl'] 0m12.8s INFO: apt-cache knows about the following packages: libtfbs-perl 0m12.8s INFO: Running scripts pre_install 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_database-server'] 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_database-server'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_exceptions'] 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_exceptions'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_extras'] 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_extras'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-cache', 'policy'] 0m12.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-cache', 'policy'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-cache', 'policy', 'libtfbs-perl'] 0m12.9s DUMP: libtfbs-perl: Installed: 0.7.1+ds-4+b1 Candidate: 0.7.1+ds-4+b1 Version table: *** 0.7.1+ds-4+b1 500 500 http://deb.debian.org/debian forky/main amd64 Packages 100 /var/lib/dpkg/status 0m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-cache', 'policy', 'libtfbs-perl'] 0m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-get', '-y', 'install', 'libtfbs-perl'] 0m13.2s DUMP: Reading package lists... Building dependency tree... Reading state information... libtfbs-perl is already the newest version (0.7.1+ds-4+b1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-get', '-y', 'install', 'libtfbs-perl'] 0m13.2s INFO: Running scripts post_install 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_install_exceptions'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_install_exceptions'] 0m13.2s INFO: Running scripts post_distupgrade 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_distupgrade_exceptions'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_distupgrade_exceptions'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m13.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_distupgrade_zz_backports'] 0m13.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_distupgrade_zz_backports'] 0m13.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s'] 0m13.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s'] 0m13.5s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpj9hhod_s to sid 0m13.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m13.5s INFO: Running scripts pre_distupgrade 0m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_distupgrade_exceptions'] 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_distupgrade_exceptions'] 0m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-get', 'update'] 0m15.7s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [216 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.2 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7427 kB] Fetched 17.8 MB in 2s (10.1 MB/s) Reading package lists... 0m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-get', 'update'] 0m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-get', '-yf', 'dist-upgrade'] 0m17.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bsdutils gcc-14-base gcc-15-base libblkid1 libgcc-s1 liblastlog2-2 libmount1 libsmartcols1 libsqlite3-0 libstdc++6 libtfbs-perl libuuid1 login mount util-linux 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 4463 kB of archives. After this operation, 879 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.41.1-3 [117 kB] Get:2 http://deb.debian.org/debian sid/main amd64 liblastlog2-2 amd64 2.41.1-3 [29.3 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.41.1-3 [38.9 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.41.1-3 [188 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.41.1-3 [229 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.41.1-3 [157 kB] Get:7 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.41.1-3 [1306 kB] Get:8 http://deb.debian.org/debian sid/main amd64 mount amd64 2.41.1-3 [172 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-8 [968 kB] Get:10 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.41.1-3 [119 kB] Get:11 http://deb.debian.org/debian sid/main amd64 gcc-15-base amd64 15.2.0-4 [52.8 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 15.2.0-4 [738 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 15.2.0-4 [71.7 kB] Get:14 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.3.0-8 [52.1 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libtfbs-perl amd64 0.7.1+ds-5 [224 kB] Fetched 4463 kB in 0s (24.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10459 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.41.1-3_amd64.deb ... Unpacking bsdutils (1:2.41.1-3) over (1:2.41.1-2) ... Setting up bsdutils (1:2.41.1-3) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10459 files and directories currently installed.) Preparing to unpack .../libstdc++6_15.2.0-4_amd64.deb ... Unpacking libstdc++6:amd64 (15.2.0-4) over (15.2.0-3) ... Setting up libstdc++6:amd64 (15.2.0-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10459 files and directories currently installed.) Preparing to unpack .../libgcc-s1_15.2.0-4_amd64.deb ... Unpacking libgcc-s1:amd64 (15.2.0-4) over (15.2.0-3) ... Setting up libgcc-s1:amd64 (15.2.0-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10459 files and directories currently installed.) Preparing to unpack .../gcc-14-base_14.3.0-8_amd64.deb ... Unpacking gcc-14-base:amd64 (14.3.0-8) over (14.3.0-7) ... Preparing to unpack .../libtfbs-perl_0.7.1+ds-5_amd64.deb ... Unpacking libtfbs-perl (0.7.1+ds-5) over (0.7.1+ds-4+b1) ... Setting up gcc-14-base:amd64 (14.3.0-8) ... Setting up libtfbs-perl (0.7.1+ds-5) ... Setting up mount (2.41.1-3) ... Setting up login (1:4.16.0-2+really2.41.1-3) ... Processing triggers for libc-bin (2.41-12) ... 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-get', '-yf', 'dist-upgrade'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m17.2s DUMP: 269e2478eec2ca6453605071888ca3ab - 0m17.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m17.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-cache', 'show', '--no-all-versions', 'libtfbs-perl'] 0m17.4s DUMP: Package: libtfbs-perl Version: 0.7.1+ds-5 Installed-Size: 984 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl (>= 5.40.1-6), perlapi-5.40.1, pdl (>= 1:2.100-1), pdlapi-20, libc6 (>= 2.38), bioperl, libwww-perl, libdbi-perl Recommends: libgd-gd2-perl | libgd-gd2-noxpm-perl Description-en: scanning DNA sequence with a position weight matrix The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences. . If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136". . Note: the TFBS perl module is no longer under active development. All the functionality can be found in the TFBSTools Bioconductor package; users are highly encouraged to switch. Description-md5: 329310953f967bb54344ec3b1c418600 Homepage: http://tfbs.genereg.net Tag: devel::lang:perl, devel::library, field::biology, field::biology:bioinformatics, implemented-in::c, implemented-in::perl, interface::commandline, role::devel-lib, role::program Section: perl Priority: optional Filename: pool/main/libt/libtfbs-perl/libtfbs-perl_0.7.1+ds-5_amd64.deb Size: 224412 MD5sum: 81cde2058eb5717d3567fccb5c4ea1a9 SHA256: 1f65105793f66bb3dfb6e336ce3d0e41a1b0ee46f776b4006af46ee47c51845a 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-cache', 'show', '--no-all-versions', 'libtfbs-perl'] 0m17.4s INFO: apt-cache knows about the following packages: libtfbs-perl 0m17.4s INFO: Running scripts pre_install 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_database-server'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_database-server'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_exceptions'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_exceptions'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_extras'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_extras'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-cache', 'policy'] 0m17.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-cache', 'policy'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-cache', 'policy', 'libtfbs-perl'] 0m17.4s DUMP: libtfbs-perl: Installed: 0.7.1+ds-5 Candidate: 0.7.1+ds-5 Version table: *** 0.7.1+ds-5 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-cache', 'policy', 'libtfbs-perl'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-get', '-y', 'install', 'libtfbs-perl'] 0m17.7s DUMP: Reading package lists... Building dependency tree... Reading state information... libtfbs-perl is already the newest version (0.7.1+ds-5). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-get', '-y', 'install', 'libtfbs-perl'] 0m17.7s INFO: Running scripts post_install 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_install_exceptions'] 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_install_exceptions'] 0m17.7s INFO: Running scripts post_distupgrade 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s'] 0m18.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s'] 0m18.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s'] 0m18.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s'] 0m18.4s INFO: Running scripts pre_install 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_database-server'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_database-server'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_exceptions'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_exceptions'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_extras'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_extras'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_foreign_architecture'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m18.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-cache', 'policy'] 0m18.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m18.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-cache', 'policy'] 0m18.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-cache', 'policy', 'libtfbs-perl'] 0m18.5s DUMP: libtfbs-perl: Installed: 0.7.1+ds-5 Candidate: 0.7.1+ds-5 Version table: *** 0.7.1+ds-5 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m18.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-cache', 'policy', 'libtfbs-perl'] 0m18.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-get', '-y', 'install', 'libtfbs-perl=0.7.1+ds-5'] 0m18.8s DUMP: Reading package lists... Building dependency tree... Reading state information... libtfbs-perl is already the newest version (0.7.1+ds-5). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-get', '-y', 'install', 'libtfbs-perl=0.7.1+ds-5'] 0m18.8s INFO: Running scripts post_install 0m18.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_install_exceptions'] 0m18.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_install_exceptions'] 0m18.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s'] 0m19.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s'] 0m19.3s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', '-ac', '--ignore-obsolete'] 0m20.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', '-ac', '--ignore-obsolete'] 0m20.0s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m20.0s DUMP: 0.15.9~deb12u1 0m20.0s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m20.0s INFO: Running adequate version 0.15.9~deb12u1 now. 0m20.0s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'libtfbs-perl'] 0m20.0s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'libtfbs-perl'] 0m20.0s INFO: Running scripts pre_remove 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m20.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m20.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_remove_exceptions'] 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/pre_remove_exceptions'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m20.4s DUMP: install ok installed apt apt 3.1.5 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.3-1 install ok installed bioperl bioperl 1.7.8-2 install ok installed bsdutils bsdutils 1:2.41.1-3 install ok installed ca-certificates ca-certificates 20250419 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.3.0-8 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-4 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libalgorithm-diff-perl libalgorithm-diff-perl 1.201-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.5 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.1.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.1-1 install ok installed libbio-perl-perl libbio-perl-perl 1.7.8-2 install ok installed libblkid1:amd64 libblkid1 2.41.1-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcapture-tiny-perl libcapture-tiny-perl 0.50-1 install ok installed libclass-data-inheritable-perl libclass-data-inheritable-perl 0.10-1 install ok installed libclone-perl:amd64 libclone-perl 0.47-1+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdata-stag-perl libdata-stag-perl 0.14-3 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdbi-perl:amd64 libdbi-perl 1.647-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libdebhelper-perl libdebhelper-perl 13.26 install ok installed libdevel-stacktrace-perl libdevel-stacktrace-perl 2.0500-1 install ok installed libencode-locale-perl libencode-locale-perl 1.05-3 install ok installed libexception-class-perl libexception-class-perl 1.45-1 install ok installed libfile-listing-perl libfile-listing-perl 6.16-1 install ok installed libfile-map-perl libfile-map-perl 0.71-2 install ok installed libfile-which-perl libfile-which-perl 1.27-2 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-4 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed libhtml-parser-perl:amd64 libhtml-parser-perl 3.83-1+b2 install ok installed libhtml-tagset-perl libhtml-tagset-perl 3.24-1 install ok installed libhtml-tree-perl libhtml-tree-perl 5.07-3 install ok installed libhttp-cookies-perl libhttp-cookies-perl 6.11-1 install ok installed libhttp-date-perl libhttp-date-perl 6.06-1 install ok installed libhttp-message-perl libhttp-message-perl 7.00-2 install ok installed libhttp-negotiate-perl libhttp-negotiate-perl 6.01-2 install ok installed libio-html-perl libio-html-perl 1.004-3 install ok installed libio-socket-ssl-perl libio-socket-ssl-perl 2.095-1 install ok installed libio-string-perl libio-string-perl 1.08-4 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.1-3 install ok installed liblwp-mediatypes-perl liblwp-mediatypes-perl 6.04-2 install ok installed liblwp-protocol-https-perl liblwp-protocol-https-perl 6.14-1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1.1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.1-3 install ok installed libnet-http-perl libnet-http-perl 6.23-1 install ok installed libnet-ssleay-perl:amd64 libnet-ssleay-perl 1.94-3 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1 install ok installed libperl5.40:amd64 libperl5.40 5.40.1-6 install ok installed libpod-parser-perl libpod-parser-perl 1.67-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.1-3 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-8 install ok installed libssl3t64:amd64 libssl3t64 3.5.2-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-4 install ok installed libsub-exporter-progressive-perl libsub-exporter-progressive-perl 0.001013-3 install ok installed libsub-uplevel-perl libsub-uplevel-perl 0.2800-3 install ok installed libsystemd0:amd64 libsystemd0 258~rc4-1 install ok installed libterm-readkey-perl libterm-readkey-perl 2.38-2+b4 install ok installed libtest-deep-perl libtest-deep-perl 1.205-1 install ok installed libtest-differences-perl libtest-differences-perl 0.71-1 install ok installed libtest-exception-perl libtest-exception-perl 0.43-3 install ok installed libtest-most-perl libtest-most-perl 0.38-1 install ok installed libtest-warn-perl libtest-warn-perl 0.37-2 install ok installed libtext-diff-perl libtext-diff-perl 1.45-2 install ok installed libtfbs-perl libtfbs-perl 0.7.1+ds-5 install ok installed libtimedate-perl libtimedate-perl 2.3300-2 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libtry-tiny-perl libtry-tiny-perl 0.32-1 install ok installed libudev1:amd64 libudev1 258~rc4-1 install ok installed liburi-perl liburi-perl 5.30-1 install ok installed libuuid1:amd64 libuuid1 2.41.1-3 install ok installed libwww-perl libwww-perl 6.78-1 install ok installed libwww-robotrules-perl libwww-robotrules-perl 6.02-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1.1 install ok installed login login 1:4.16.0-2+really2.41.1-3 install ok installed login.defs login.defs 1:4.18.0-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41.1-3 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed netbase netbase 6.5 install ok installed openssl openssl 3.5.2-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.2-1 install ok installed passwd passwd 1:4.18.0-1 install ok installed pdl pdl 1:2.100-1 install ok installed perl perl 5.40.1-6 install ok installed perl-base perl-base 5.40.1-6 install ok installed perl-modules-5.40 perl-modules-5.40 5.40.1-6 install ok installed perl-openssl-defaults:amd64 perl-openssl-defaults 7+b2 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-5 install ok installed util-linux util-linux 2.41.1-3 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m20.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m20.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-get', 'remove', '--allow-remove-essential', 'bioperl', 'ca-certificates', 'libalgorithm-diff-perl', 'libbio-perl-perl', 'libcapture-tiny-perl', 'libclass-data-inheritable-perl', 'libclone-perl:amd64', 'libdata-stag-perl', 'libdbi-perl:amd64', 'libdebhelper-perl', 'libdevel-stacktrace-perl', 'libencode-locale-perl', 'libexception-class-perl', 'libfile-listing-perl', 'libfile-map-perl', 'libfile-which-perl', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libnet-http-perl', 'libnet-ssleay-perl:amd64', 'libperl5.40:amd64', 'libpod-parser-perl', 'libsub-exporter-progressive-perl', 'libsub-uplevel-perl', 'libterm-readkey-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-warn-perl', 'libtext-diff-perl', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'netbase', 'openssl', 'pdl', 'perl', 'perl-modules-5.40', 'perl-openssl-defaults:amd64', 'sensible-utils', 'libtfbs-perl'] 0m21.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: bioperl ca-certificates libalgorithm-diff-perl libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl libclone-perl libdata-stag-perl libdbi-perl libdebhelper-perl libdevel-stacktrace-perl libencode-locale-perl libexception-class-perl libfile-listing-perl libfile-map-perl libfile-which-perl libgdbm-compat4t64 libgdbm6t64 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libperl5.40 libpod-parser-perl libsub-exporter-progressive-perl libsub-uplevel-perl libterm-readkey-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtfbs-perl libtimedate-perl libtry-tiny-perl liburi-perl libwww-perl libwww-robotrules-perl netbase openssl pdl perl perl-modules-5.40 perl-openssl-defaults sensible-utils 0 upgraded, 0 newly installed, 56 to remove and 0 not upgraded. After this operation, 87.2 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10458 files and directories currently installed.) Removing libtfbs-perl (0.7.1+ds-5) ... Removing bioperl (1.7.8-2) ... Removing libtest-most-perl (0.38-1) ... Removing libtest-differences-perl (0.71-1) ... Removing libtext-diff-perl (1.45-2) ... Removing libalgorithm-diff-perl (1.201-1) ... Removing libbio-perl-perl (1.7.8-2) ... Removing libcapture-tiny-perl (0.50-1) ... Removing libexception-class-perl (1.45-1) ... Removing libclass-data-inheritable-perl (0.10-1) ... Removing libdata-stag-perl (0.14-3) ... Removing libdbi-perl:amd64 (1.647-1) ... Removing pdl (1:2.100-1) ... Removing libdebhelper-perl (13.26) ... Removing libdevel-stacktrace-perl (2.0500-1) ... Removing libfile-map-perl (0.71-2) ... Removing libfile-which-perl (1.27-2) ... Removing libtest-deep-perl (1.205-1) ... Removing libterm-readkey-perl (2.38-2+b4) ... Removing libio-string-perl (1.08-4) ... Removing libpod-parser-perl (1.67-1) ... Removing 'diversion of /usr/bin/podselect to /usr/bin/podselect.bundled by libpod-parser-perl' Removing 'diversion of /usr/share/man/man1/podselect.1.gz to /usr/share/man/man1/podselect.bundled.1.gz by libpod-parser-perl' Removing libsub-exporter-progressive-perl (0.001013-3) ... Removing libtest-warn-perl (0.37-2) ... Removing libtest-exception-perl (0.43-3) ... Removing libsub-uplevel-perl (0.2800-3) ... Removing sensible-utils (0.0.26) ... Removing libwww-perl (6.78-1) ... Removing liblwp-protocol-https-perl (6.14-1) ... Removing ca-certificates (20250419) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libhttp-negotiate-perl (6.01-2) ... Removing libhttp-cookies-perl (6.11-1) ... Removing libhttp-message-perl (7.00-2) ... Removing libclone-perl:amd64 (0.47-1+b1) ... Removing libencode-locale-perl (1.05-3) ... Removing libfile-listing-perl (6.16-1) ... Removing libwww-robotrules-perl (6.02-1) ... Removing libnet-http-perl (6.23-1) ... Removing libhtml-tree-perl (5.07-3) ... Removing libhtml-parser-perl:amd64 (3.83-1+b2) ... Removing liburi-perl (5.30-1) ... Removing libhttp-date-perl (6.06-1) ... Removing libtry-tiny-perl (0.32-1) ... Removing libhtml-tagset-perl (3.24-1) ... Removing libio-html-perl (1.004-3) ... Removing libio-socket-ssl-perl (2.095-1) ... Removing liblwp-mediatypes-perl (6.04-2) ... Removing libnet-ssleay-perl:amd64 (1.94-3) ... Removing libtimedate-perl (2.3300-2) ... Removing netbase (6.5) ... Removing openssl (3.5.2-1) ... Removing perl-openssl-defaults:amd64 (7+b2) ... Removing perl (5.40.1-6) ... Removing libperl5.40:amd64 (5.40.1-6) ... Removing libgdbm-compat4t64:amd64 (1.26-1) ... Removing libgdbm6t64:amd64 (1.26-1) ... Removing perl-modules-5.40 (5.40.1-6) ... Processing triggers for libc-bin (2.41-12) ... 0m21.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-get', 'remove', '--allow-remove-essential', 'bioperl', 'ca-certificates', 'libalgorithm-diff-perl', 'libbio-perl-perl', 'libcapture-tiny-perl', 'libclass-data-inheritable-perl', 'libclone-perl:amd64', 'libdata-stag-perl', 'libdbi-perl:amd64', 'libdebhelper-perl', 'libdevel-stacktrace-perl', 'libencode-locale-perl', 'libexception-class-perl', 'libfile-listing-perl', 'libfile-map-perl', 'libfile-which-perl', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libnet-http-perl', 'libnet-ssleay-perl:amd64', 'libperl5.40:amd64', 'libpod-parser-perl', 'libsub-exporter-progressive-perl', 'libsub-uplevel-perl', 'libterm-readkey-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-warn-perl', 'libtext-diff-perl', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'netbase', 'openssl', 'pdl', 'perl', 'perl-modules-5.40', 'perl-openssl-defaults:amd64', 'sensible-utils', 'libtfbs-perl'] 0m21.2s INFO: Running scripts post_remove 0m21.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_remove_exceptions'] 0m21.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_remove_exceptions'] 0m21.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'dpkg', '--purge', 'bioperl', 'ca-certificates', 'libalgorithm-diff-perl', 'libbio-perl-perl', 'libcapture-tiny-perl', 'libclass-data-inheritable-perl', 'libclone-perl:amd64', 'libdata-stag-perl', 'libdbi-perl:amd64', 'libdebhelper-perl', 'libdevel-stacktrace-perl', 'libencode-locale-perl', 'libexception-class-perl', 'libfile-listing-perl', 'libfile-map-perl', 'libfile-which-perl', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libnet-http-perl', 'libnet-ssleay-perl:amd64', 'libperl5.40:amd64', 'libpod-parser-perl', 'libsub-exporter-progressive-perl', 'libsub-uplevel-perl', 'libterm-readkey-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-warn-perl', 'libtext-diff-perl', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'netbase', 'openssl', 'pdl', 'perl', 'perl-modules-5.40', 'perl-openssl-defaults:amd64', 'sensible-utils'] 0m21.2s DUMP: dpkg: warning: ignoring request to remove bioperl which isn't installed (Reading database ... 4955 files and directories currently installed.) Purging configuration files for ca-certificates (20250419) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove libalgorithm-diff-perl which isn't installed dpkg: warning: ignoring request to remove libbio-perl-perl which isn't installed dpkg: warning: ignoring request to remove libcapture-tiny-perl which isn't installed dpkg: warning: ignoring request to remove libclass-data-inheritable-perl which isn't installed dpkg: warning: ignoring request to remove libclone-perl which isn't installed dpkg: warning: ignoring request to remove libdata-stag-perl which isn't installed dpkg: warning: ignoring request to remove libdbi-perl which isn't installed dpkg: warning: ignoring request to remove libdebhelper-perl which isn't installed dpkg: warning: ignoring request to remove libdevel-stacktrace-perl which isn't installed dpkg: warning: ignoring request to remove libencode-locale-perl which isn't installed dpkg: warning: ignoring request to remove libexception-class-perl which isn't installed dpkg: warning: ignoring request to remove libfile-listing-perl which isn't installed dpkg: warning: ignoring request to remove libfile-map-perl which isn't installed dpkg: warning: ignoring request to remove libfile-which-perl which isn't installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which isn't installed dpkg: warning: ignoring request to remove libgdbm6t64 which isn't installed dpkg: warning: ignoring request to remove libhtml-parser-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tagset-perl which isn't installed dpkg: warning: ignoring request to remove libhtml-tree-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-cookies-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-date-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-message-perl which isn't installed dpkg: warning: ignoring request to remove libhttp-negotiate-perl which isn't installed dpkg: warning: ignoring request to remove libio-html-perl which isn't installed dpkg: warning: ignoring request to remove libio-socket-ssl-perl which isn't installed dpkg: warning: ignoring request to remove libio-string-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-mediatypes-perl which isn't installed dpkg: warning: ignoring request to remove liblwp-protocol-https-perl which isn't installed dpkg: warning: ignoring request to remove libnet-http-perl which isn't installed dpkg: warning: ignoring request to remove libnet-ssleay-perl which isn't installed dpkg: warning: ignoring request to remove libperl5.40 which isn't installed Purging configuration files for libpod-parser-perl (1.67-1) ... dpkg: warning: ignoring request to remove libsub-exporter-progressive-perl which isn't installed dpkg: warning: ignoring request to remove libsub-uplevel-perl which isn't installed dpkg: warning: ignoring request to remove libterm-readkey-perl which isn't installed dpkg: warning: ignoring request to remove libtest-deep-perl which isn't installed dpkg: warning: ignoring request to remove libtest-differences-perl which isn't installed dpkg: warning: ignoring request to remove libtest-exception-perl which isn't installed dpkg: warning: ignoring request to remove libtest-most-perl which isn't installed dpkg: warning: ignoring request to remove libtest-warn-perl which isn't installed dpkg: warning: ignoring request to remove libtext-diff-perl which isn't installed dpkg: warning: ignoring request to remove libtimedate-perl which isn't installed dpkg: warning: ignoring request to remove libtry-tiny-perl which isn't installed dpkg: warning: ignoring request to remove liburi-perl which isn't installed dpkg: warning: ignoring request to remove libwww-perl which isn't installed dpkg: warning: ignoring request to remove libwww-robotrules-perl which isn't installed Purging configuration files for netbase (6.5) ... Purging configuration files for openssl (3.5.2-1) ... Purging configuration files for pdl (1:2.100-1) ... Purging configuration files for perl (5.40.1-6) ... dpkg: warning: ignoring request to remove perl-modules-5.40 which isn't installed dpkg: warning: ignoring request to remove perl-openssl-defaults which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed 0m21.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'dpkg', '--purge', 'bioperl', 'ca-certificates', 'libalgorithm-diff-perl', 'libbio-perl-perl', 'libcapture-tiny-perl', 'libclass-data-inheritable-perl', 'libclone-perl:amd64', 'libdata-stag-perl', 'libdbi-perl:amd64', 'libdebhelper-perl', 'libdevel-stacktrace-perl', 'libencode-locale-perl', 'libexception-class-perl', 'libfile-listing-perl', 'libfile-map-perl', 'libfile-which-perl', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libhtml-parser-perl:amd64', 'libhtml-tagset-perl', 'libhtml-tree-perl', 'libhttp-cookies-perl', 'libhttp-date-perl', 'libhttp-message-perl', 'libhttp-negotiate-perl', 'libio-html-perl', 'libio-socket-ssl-perl', 'libio-string-perl', 'liblwp-mediatypes-perl', 'liblwp-protocol-https-perl', 'libnet-http-perl', 'libnet-ssleay-perl:amd64', 'libperl5.40:amd64', 'libpod-parser-perl', 'libsub-exporter-progressive-perl', 'libsub-uplevel-perl', 'libterm-readkey-perl', 'libtest-deep-perl', 'libtest-differences-perl', 'libtest-exception-perl', 'libtest-most-perl', 'libtest-warn-perl', 'libtext-diff-perl', 'libtimedate-perl', 'libtry-tiny-perl', 'liburi-perl', 'libwww-perl', 'libwww-robotrules-perl', 'netbase', 'openssl', 'pdl', 'perl', 'perl-modules-5.40', 'perl-openssl-defaults:amd64', 'sensible-utils'] 0m21.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'dpkg', '--purge', 'libtfbs-perl'] 0m21.3s DUMP: dpkg: warning: ignoring request to remove libtfbs-perl which isn't installed 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'dpkg', '--purge', 'libtfbs-perl'] 0m21.3s INFO: Running scripts post_purge 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_purge_exceptions'] 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_purge_exceptions'] 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'dpkg', '--purge', '--pending'] 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'dpkg', '--purge', '--pending'] 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'dpkg', '--remove', '--pending'] 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'dpkg', '--remove', '--pending'] 0m21.3s INFO: Running scripts post_test 0m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_test_exceptions'] 0m21.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'tmp/scripts/post_test_exceptions'] 0m21.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s'] 0m21.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'dpkg-divert', '--list'] 0m21.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'dpkg-divert', '--list'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-get', 'clean'] 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s', 'apt-get', 'clean'] 0m21.5s DEBUG: Recording chroot state 0m22.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s/dev/shm'] 0m22.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s/dev/shm'] 0m22.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s/dev/console'] 0m22.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s/dev/console'] 0m22.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s/dev/ptmx'] 0m22.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s/dev/ptmx'] 0m22.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s/dev/pts'] 0m22.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s/dev/pts'] 0m22.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s/proc'] 0m22.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s/proc'] 0m22.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s'] 0m22.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpj9hhod_s'] 0m22.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpj9hhod_s 0m22.3s INFO: PASS: Upgrading between Debian distributions. 0m22.3s INFO: PASS: All tests. 0m22.3s INFO: piuparts run ends. ret=0 End: 2025-09-12 03:45:59 GMT