Start: 2025-10-22 04:51:57 GMT [stable] Package: python-mdanalysis-doc Source: mdanalysis Version: 2.9.0-12 Installed-Size: 23571 Maintainer: Debichem Team Architecture: all Depends: libjs-mathjax, libjs-sphinxdoc (>= 8.1) Description: analyse molecular dynamics files and trajectories ( documentation) Multi-Arch: foreign Homepage: https://www.mdanalysis.org/ Description-md5: 5afe353b3749292e390f4d109f4a2920 Section: doc Priority: optional Filename: pool/main/m/mdanalysis/python-mdanalysis-doc_2.9.0-12_all.deb Size: 3504296 MD5sum: 8cbe3f1778e71d85e1eaa332f34fa599 SHA256: 767eabd05ace7fc18bf8cc322fab3728368e95f3644add4c19073b2f35ed2b31 [testing] Package: python-mdanalysis-doc Source: mdanalysis Version: 2.9.0-12 Installed-Size: 23571 Maintainer: Debichem Team Architecture: all Depends: libjs-mathjax, libjs-sphinxdoc (>= 8.1) Description: analyse molecular dynamics files and trajectories ( documentation) Multi-Arch: foreign Homepage: https://www.mdanalysis.org/ Description-md5: 5afe353b3749292e390f4d109f4a2920 Section: doc Priority: optional Filename: pool/main/m/mdanalysis/python-mdanalysis-doc_2.9.0-12_all.deb Size: 3504296 MD5sum: 8cbe3f1778e71d85e1eaa332f34fa599 SHA256: 767eabd05ace7fc18bf8cc322fab3728368e95f3644add4c19073b2f35ed2b31 [sid] Package: python-mdanalysis-doc Source: mdanalysis Version: 2.10.0-1 Installed-Size: 24715 Maintainer: Debichem Team Architecture: all Depends: libjs-mathjax, libjs-sphinxdoc (>= 8.2) Description: analyse molecular dynamics files and trajectories ( documentation) Multi-Arch: foreign Homepage: https://www.mdanalysis.org/ Description-md5: 5afe353b3749292e390f4d109f4a2920 Section: doc Priority: optional Filename: pool/main/m/mdanalysis/python-mdanalysis-doc_2.10.0-1_all.deb Size: 3549068 MD5sum: 888e54ea0cf913624c371be94366e268 SHA256: a63bd34804c09de559028398c87f6072478fff564cec4e040b443137dd792193 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat --apt python-mdanalysis-doc=2.10.0-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211944~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat --apt python-mdanalysis-doc=2.10.0-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.1.0-40-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.153-1 (2025-09-20) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpqerc8os1 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpqerc8os1 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpqerc8os1/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpqerc8os1/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpqerc8os1/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpqerc8os1/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpqerc8os1/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpqerc8os1/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpqerc8os1/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpqerc8os1/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/6', '/srv/piuparts.debian.org/tmp/tmpqerc8os1/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/6', '/srv/piuparts.debian.org/tmp/tmpqerc8os1/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpqerc8os1/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpqerc8os1/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpqerc8os1/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-get', 'update'] 0m1.0s DUMP: Hit:1 http://deb.debian.org/debian trixie InRelease Reading package lists... 0m1.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-get', 'update'] 0m1.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-get', '-yf', 'dist-upgrade'] 0m1.6s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-get', '-yf', 'dist-upgrade'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.9s DUMP: cc6be03135582e5dd4c9ee869186ad39 - 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.9s INFO: Running scripts post_setup 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_setup_dummy_users'] 0m2.8s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_setup_dummy_users'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_setup_forbid_home'] 0m2.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_setup_forbid_home'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_setup_force-unsafe-io'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_setup_minimize'] 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_setup_minimize'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_setup_squeeze-backports'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_setup_zz_backports'] 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_setup_zz_backports'] 0m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m2.8s DUMP: install ok installed apt apt 3.0.3 install ok installed base-files base-files 13.8+deb13u1 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2+b5 install ok installed bsdutils bsdutils 1:2.41-5 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69~deb13u1 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.3 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.41-5 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-5 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41-5 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1~deb13u1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41-5 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-7 install ok installed libssl3t64:amd64 libssl3t64 3.5.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.8-1~deb13u1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.8-1~deb13u1 install ok installed libuuid1:amd64 libuuid1 2.41-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.41-5 install ok installed login.defs login.defs 1:4.17.4-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41-5 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.1-1 install ok installed passwd passwd 1:4.17.4-2 install ok installed perl-base perl-base 5.40.1-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-4+deb13u1 install ok installed util-linux util-linux 2.41-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m2.8s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat 0m2.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqerc8os1'] 0m3.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqerc8os1'] 0m3.2s INFO: Running scripts is_testable 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/is_testable_uninstallable'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/is_testable_uninstallable'] 0m3.2s INFO: Running scripts pre_test 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_test_exceptions'] 0m3.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_test_exceptions'] 0m3.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_test_root_password'] 0m3.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_test_root_password'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-cache', 'show', '--no-all-versions', 'python-mdanalysis-doc'] 0m3.6s DUMP: Package: python-mdanalysis-doc Source: mdanalysis Version: 2.9.0-12 Installed-Size: 23571 Maintainer: Debichem Team Architecture: all Depends: libjs-mathjax, libjs-sphinxdoc (>= 8.1) Description-en: analyse molecular dynamics files and trajectories ( documentation) MDAnalysis is a Python library for the analysis of computer simulations of many-body systems at the molecular scale, spanning use cases from interactions of drugs with proteins to novel materials. It is widely used in the scientific community and is written by scientists for scientists. . MDAnalysis allows one to read particle-based trajectories (including individual coordinate frames such as biomolecules in the PDB format) and access the atomic coordinates through NumPy arrays. This provides a flexible and relatively fast framework for complex analysis tasks. In addition, powerful atom selection commands are implemented. Trajectories can also be manipulated (for instance, fit to a reference structure) and written out. . It works with a wide range of popular simulation packages including Gromacs, Amber, NAMD, CHARMM, DL_Poly, HooMD, LAMMPS and many others ?? see the lists of supported trajectory formats and topology formats. MDAnalysis also includes widely used analysis algorithms in the MDAnalysis.analysis module. . The MDAnalysis project uses an open governance model and is fiscally sponsored by NumFOCUS. . This is the documentation package for MDAnalysis. Description-md5: 5afe353b3749292e390f4d109f4a2920 Multi-Arch: foreign Homepage: https://www.mdanalysis.org/ Section: doc Priority: optional Filename: pool/main/m/mdanalysis/python-mdanalysis-doc_2.9.0-12_all.deb Size: 3504296 MD5sum: 8cbe3f1778e71d85e1eaa332f34fa599 SHA256: 767eabd05ace7fc18bf8cc322fab3728368e95f3644add4c19073b2f35ed2b31 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-cache', 'show', '--no-all-versions', 'python-mdanalysis-doc'] 0m3.6s INFO: apt-cache knows about the following packages: python-mdanalysis-doc 0m3.6s INFO: Running scripts pre_install 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_database-server'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_database-server'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_exceptions'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_exceptions'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_extras'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_extras'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-cache', 'policy'] 0m3.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release v=13.1,o=Debian,a=stable,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-cache', 'policy'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-cache', 'policy', 'python-mdanalysis-doc'] 0m3.7s DUMP: python-mdanalysis-doc: Installed: (none) Candidate: 2.9.0-12 Version table: 2.9.0-12 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-cache', 'policy', 'python-mdanalysis-doc'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-get', '-y', 'install', 'python-mdanalysis-doc'] 0m6.1s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: fonts-mathjax libjs-jquery libjs-mathjax libjs-sphinxdoc libjs-underscore Suggested packages: fonts-mathjax-extras fonts-stix libjs-mathjax-doc Recommended packages: javascript-common The following NEW packages will be installed: fonts-mathjax libjs-jquery libjs-mathjax libjs-sphinxdoc libjs-underscore python-mdanalysis-doc 0 upgraded, 6 newly installed, 0 to remove and 0 not upgraded. Need to get 11.9 MB of archives. After this operation, 72.3 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 python-mdanalysis-doc all 2.9.0-12 [3504 kB] Fetched 11.9 MB in 0s (89.1 MB/s) Selecting previously unselected package fonts-mathjax. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4939 files and directories currently installed.) Preparing to unpack .../0-fonts-mathjax_2.7.9+dfsg-1_all.deb ... Unpacking fonts-mathjax (2.7.9+dfsg-1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../1-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-mathjax. Preparing to unpack .../2-libjs-mathjax_2.7.9+dfsg-1_all.deb ... Unpacking libjs-mathjax (2.7.9+dfsg-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../3-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../4-libjs-sphinxdoc_8.1.3-5_all.deb ... Unpacking libjs-sphinxdoc (8.1.3-5) ... Selecting previously unselected package python-mdanalysis-doc. Preparing to unpack .../5-python-mdanalysis-doc_2.9.0-12_all.deb ... Unpacking python-mdanalysis-doc (2.9.0-12) ... Setting up fonts-mathjax (2.7.9+dfsg-1) ... Setting up libjs-mathjax (2.7.9+dfsg-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libjs-sphinxdoc (8.1.3-5) ... Setting up python-mdanalysis-doc (2.9.0-12) ... 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-get', '-y', 'install', 'python-mdanalysis-doc'] 0m6.1s INFO: Running scripts post_install 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_install_exceptions'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_install_exceptions'] 0m6.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqerc8os1'] 0m6.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqerc8os1'] 0m6.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpqerc8os1 to testing 0m6.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m6.8s INFO: Running scripts pre_distupgrade 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_distupgrade_exceptions'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_distupgrade_exceptions'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-get', 'update'] 0m9.6s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [147 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [9682 kB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6449 kB] Fetched 16.3 MB in 2s (10.0 MB/s) Reading package lists... 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-get', 'update'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-get', '-yf', 'dist-upgrade'] 0m15.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libjs-jquery libjs-underscore Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: gcc-15-base The following packages will be upgraded: apt base-files bash bsdutils diffutils gcc-14-base grep init-system-helpers libapt-pkg7.0 libaudit-common libaudit1 libblkid1 libdb5.3t64 libgcc-s1 libgmp10 libhogweed6t64 libjs-jquery libjs-sphinxdoc liblastlog2-2 liblzma5 libmount1 libnettle8t64 libpcre2-8-0 libsepol2 libsmartcols1 libsqlite3-0 libssl3t64 libstdc++6 libsystemd0 libudev1 libuuid1 libzstd1 login login.defs mount openssl-provider-legacy passwd tzdata util-linux 39 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 18.0 MB of archives. After this operation, 744 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 base-files amd64 14 [72.9 kB] Get:2 http://deb.debian.org/debian forky/main amd64 bash amd64 5.3-1 [1556 kB] Get:3 http://deb.debian.org/debian forky/main amd64 diffutils amd64 1:3.12-1 [405 kB] Get:4 http://deb.debian.org/debian forky/main amd64 grep amd64 3.12-1 [443 kB] Get:5 http://deb.debian.org/debian forky/main amd64 liblastlog2-2 amd64 2.41.2-1 [28.9 kB] Get:6 http://deb.debian.org/debian forky/main amd64 libuuid1 amd64 2.41.2-1 [38.1 kB] Get:7 http://deb.debian.org/debian forky/main amd64 bsdutils amd64 1:2.41.2-1 [93.4 kB] Get:8 http://deb.debian.org/debian forky/main amd64 libblkid1 amd64 2.41.2-1 [173 kB] Get:9 http://deb.debian.org/debian forky/main amd64 libmount1 amd64 2.41.2-1 [211 kB] Get:10 http://deb.debian.org/debian forky/main amd64 libsmartcols1 amd64 2.41.2-1 [144 kB] Get:11 http://deb.debian.org/debian forky/main amd64 util-linux amd64 2.41.2-1 [1257 kB] Get:12 http://deb.debian.org/debian forky/main amd64 mount amd64 2.41.2-1 [162 kB] Get:13 http://deb.debian.org/debian forky/main amd64 libsqlite3-0 amd64 3.46.1-8 [968 kB] Get:14 http://deb.debian.org/debian forky/main amd64 libsystemd0 amd64 258.1-1 [467 kB] Get:15 http://deb.debian.org/debian forky/main amd64 gcc-15-base amd64 15.2.0-4 [52.8 kB] Get:16 http://deb.debian.org/debian forky/main amd64 libgcc-s1 amd64 15.2.0-4 [71.7 kB] Get:17 http://deb.debian.org/debian forky/main amd64 liblzma5 amd64 5.8.1-2 [310 kB] Get:18 http://deb.debian.org/debian forky/main amd64 openssl-provider-legacy amd64 3.5.4-1 [308 kB] Get:19 http://deb.debian.org/debian forky/main amd64 libzstd1 amd64 1.5.7+dfsg-2 [308 kB] Get:20 http://deb.debian.org/debian forky/main amd64 libssl3t64 amd64 3.5.4-1 [2446 kB] Get:21 http://deb.debian.org/debian forky/main amd64 libstdc++6 amd64 15.2.0-4 [738 kB] Get:22 http://deb.debian.org/debian forky/main amd64 libudev1 amd64 258.1-1 [156 kB] Get:23 http://deb.debian.org/debian forky/main amd64 libapt-pkg7.0 amd64 3.1.8 [1206 kB] Get:24 http://deb.debian.org/debian forky/main amd64 apt amd64 3.1.8 [1483 kB] Get:25 http://deb.debian.org/debian forky/main amd64 init-system-helpers all 1.69 [39.3 kB] Get:26 http://deb.debian.org/debian forky/main amd64 libaudit-common all 1:4.1.2-1 [14.3 kB] Get:27 http://deb.debian.org/debian forky/main amd64 libaudit1 amd64 1:4.1.2-1 [60.4 kB] Get:28 http://deb.debian.org/debian forky/main amd64 login amd64 1:4.16.0-2+really2.41.2-1 [105 kB] Get:29 http://deb.debian.org/debian forky/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-10 [709 kB] Get:30 http://deb.debian.org/debian forky/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5 [574 kB] Get:31 http://deb.debian.org/debian forky/main amd64 libnettle8t64 amd64 3.10.2-1 [307 kB] Get:32 http://deb.debian.org/debian forky/main amd64 libhogweed6t64 amd64 3.10.2-1 [336 kB] Get:33 http://deb.debian.org/debian forky/main amd64 libpcre2-8-0 amd64 10.46-1 [298 kB] Get:34 http://deb.debian.org/debian forky/main amd64 login.defs all 1:4.18.0-1 [211 kB] Get:35 http://deb.debian.org/debian forky/main amd64 passwd amd64 1:4.18.0-1 [1284 kB] Get:36 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get:37 http://deb.debian.org/debian forky/main amd64 gcc-14-base amd64 14.3.0-8 [52.1 kB] Get:38 http://deb.debian.org/debian forky/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get:39 http://deb.debian.org/debian forky/main amd64 libjs-sphinxdoc all 8.2.3-7 [27.6 kB] Get:40 http://deb.debian.org/debian forky/main amd64 libsepol2 amd64 3.9-2 [300 kB] Preconfiguring packages ... Fetched 18.0 MB in 0s (119 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9898 files and directories currently installed.) Preparing to unpack .../base-files_14_amd64.deb ... Unpacking base-files (14) over (13.8+deb13u1) ... Setting up base-files (14) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9897 files and directories currently installed.) Preparing to unpack .../archives/bash_5.3-1_amd64.deb ... Unpacking bash (5.3-1) over (5.2.37-2+b5) ... Setting up bash (5.3-1) ... Installing new version of config file /etc/bash.bashrc ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9898 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.12-1_amd64.deb ... Unpacking diffutils (1:3.12-1) over (1:3.10-4) ... Setting up diffutils (1:3.12-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9898 files and directories currently installed.) Preparing to unpack .../archives/grep_3.12-1_amd64.deb ... Unpacking grep (3.12-1) over (3.11-4) ... Setting up grep (3.12-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9898 files and directories currently installed.) Preparing to unpack .../liblastlog2-2_2.41.2-1_amd64.deb ... Unpacking liblastlog2-2:amd64 (2.41.2-1) over (2.41-5) ... Setting up liblastlog2-2:amd64 (2.41.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9898 files and directories currently installed.) Preparing to unpack .../libuuid1_2.41.2-1_amd64.deb ... Unpacking libuuid1:amd64 (2.41.2-1) over (2.41-5) ... Setting up libuuid1:amd64 (2.41.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9898 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.41.2-1_amd64.deb ... Unpacking bsdutils (1:2.41.2-1) over (1:2.41-5) ... Setting up bsdutils (1:2.41.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9895 files and directories currently installed.) Preparing to unpack .../libblkid1_2.41.2-1_amd64.deb ... Unpacking libblkid1:amd64 (2.41.2-1) over (2.41-5) ... Setting up libblkid1:amd64 (2.41.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9895 files and directories currently installed.) Preparing to unpack .../libmount1_2.41.2-1_amd64.deb ... Unpacking libmount1:amd64 (2.41.2-1) over (2.41-5) ... Setting up libmount1:amd64 (2.41.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9895 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.41.2-1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.41.2-1) over (2.41-5) ... Setting up libsmartcols1:amd64 (2.41.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9895 files and directories currently installed.) Preparing to unpack .../util-linux_2.41.2-1_amd64.deb ... Unpacking util-linux (2.41.2-1) over (2.41-5) ... Setting up util-linux (2.41.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9901 files and directories currently installed.) Preparing to unpack .../mount_2.41.2-1_amd64.deb ... Unpacking mount (2.41.2-1) over (2.41-5) ... Preparing to unpack .../libsqlite3-0_3.46.1-8_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-8) over (3.46.1-7) ... Setting up libsqlite3-0:amd64 (3.46.1-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9901 files and directories currently installed.) Preparing to unpack .../libsystemd0_258.1-1_amd64.deb ... Unpacking libsystemd0:amd64 (258.1-1) over (257.8-1~deb13u1) ... Setting up libsystemd0:amd64 (258.1-1) ... Selecting previously unselected package gcc-15-base:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9901 files and directories currently installed.) Preparing to unpack .../gcc-15-base_15.2.0-4_amd64.deb ... Unpacking gcc-15-base:amd64 (15.2.0-4) ... Setting up gcc-15-base:amd64 (15.2.0-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9906 files and directories currently installed.) Preparing to unpack .../libgcc-s1_15.2.0-4_amd64.deb ... Unpacking libgcc-s1:amd64 (15.2.0-4) over (14.2.0-19) ... Setting up libgcc-s1:amd64 (15.2.0-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9906 files and directories currently installed.) Preparing to unpack .../liblzma5_5.8.1-2_amd64.deb ... Unpacking liblzma5:amd64 (5.8.1-2) over (5.8.1-1) ... Setting up liblzma5:amd64 (5.8.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9906 files and directories currently installed.) Preparing to unpack .../openssl-provider-legacy_3.5.4-1_amd64.deb ... Unpacking openssl-provider-legacy (3.5.4-1) over (3.5.1-1) ... Setting up openssl-provider-legacy (3.5.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9906 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.7+dfsg-2_amd64.deb ... Unpacking libzstd1:amd64 (1.5.7+dfsg-2) over (1.5.7+dfsg-1) ... Setting up libzstd1:amd64 (1.5.7+dfsg-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9906 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.5.4-1_amd64.deb ... Unpacking libssl3t64:amd64 (3.5.4-1) over (3.5.1-1) ... Setting up libssl3t64:amd64 (3.5.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9906 files and directories currently installed.) Preparing to unpack .../libstdc++6_15.2.0-4_amd64.deb ... Unpacking libstdc++6:amd64 (15.2.0-4) over (14.2.0-19) ... Setting up libstdc++6:amd64 (15.2.0-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9906 files and directories currently installed.) Preparing to unpack .../libudev1_258.1-1_amd64.deb ... Unpacking libudev1:amd64 (258.1-1) over (257.8-1~deb13u1) ... Setting up libudev1:amd64 (258.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9906 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_3.1.8_amd64.deb ... Unpacking libapt-pkg7.0:amd64 (3.1.8) over (3.0.3) ... Setting up libapt-pkg7.0:amd64 (3.1.8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9906 files and directories currently installed.) Preparing to unpack .../archives/apt_3.1.8_amd64.deb ... Unpacking apt (3.1.8) over (3.0.3) ... Setting up apt (3.1.8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9904 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.69_all.deb ... Unpacking init-system-helpers (1.69) over (1.69~deb13u1) ... Setting up init-system-helpers (1.69) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9904 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a4.1.2-1_all.deb ... Unpacking libaudit-common (1:4.1.2-1) over (1:4.0.2-2) ... Setting up libaudit-common (1:4.1.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9904 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.1.2-1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.1.2-1) over (1:4.0.2-2+b2) ... Setting up libaudit1:amd64 (1:4.1.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9903 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.41.2-1_amd64.deb ... Unpacking login (1:4.16.0-2+really2.41.2-1) over (1:4.16.0-2+really2.41-5) ... Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-10_amd64.deb ... Unpacking libdb5.3t64:amd64 (5.3.28+dfsg2-10) over (5.3.28+dfsg2-9) ... Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9895 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-5_amd64.deb ... Unpacking libgmp10:amd64 (2:6.3.0+dfsg-5) over (2:6.3.0+dfsg-3) ... Setting up libgmp10:amd64 (2:6.3.0+dfsg-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9895 files and directories currently installed.) Preparing to unpack .../libnettle8t64_3.10.2-1_amd64.deb ... Unpacking libnettle8t64:amd64 (3.10.2-1) over (3.10.1-1) ... Setting up libnettle8t64:amd64 (3.10.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9895 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.10.2-1_amd64.deb ... Unpacking libhogweed6t64:amd64 (3.10.2-1) over (3.10.1-1) ... Setting up libhogweed6t64:amd64 (3.10.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9895 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.46-1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.46-1) over (10.46-1~deb13u1) ... Setting up libpcre2-8-0:amd64 (10.46-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9895 files and directories currently installed.) Preparing to unpack .../0-login.defs_1%3a4.18.0-1_all.deb ... Unpacking login.defs (1:4.18.0-1) over (1:4.17.4-2) ... Preparing to unpack .../1-passwd_1%3a4.18.0-1_amd64.deb ... Unpacking passwd (1:4.18.0-1) over (1:4.17.4-2) ... Preparing to unpack .../2-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) over (2025b-4+deb13u1) ... Preparing to unpack .../3-gcc-14-base_14.3.0-8_amd64.deb ... Unpacking gcc-14-base:amd64 (14.3.0-8) over (14.2.0-19) ... Preparing to unpack .../4-libjs-jquery_3.7.1+dfsg+~3.5.33-1_all.deb ... Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1) over (3.6.1+dfsg+~3.5.14-1) ... Preparing to unpack .../5-libjs-sphinxdoc_8.2.3-7_all.deb ... Unpacking libjs-sphinxdoc (8.2.3-7) over (8.1.3-5) ... Preparing to unpack .../6-libsepol2_3.9-2_amd64.deb ... Unpacking libsepol2:amd64 (3.9-2) over (3.8.1-1) ... Setting up gcc-14-base:amd64 (14.3.0-8) ... Setting up login.defs (1:4.18.0-1) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Oct 22 04:52:12 UTC 2025. Universal Time is now: Wed Oct 22 04:52:12 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libsepol2:amd64 (3.9-2) ... Setting up libjs-sphinxdoc (8.2.3-7) ... Setting up passwd (1:4.18.0-1) ... Setting up mount (2.41.2-1) ... Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Setting up login (1:4.16.0-2+really2.41.2-1) ... Processing triggers for debianutils (5.23.2) ... Processing triggers for libc-bin (2.41-12) ... 0m15.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-get', '-yf', 'dist-upgrade'] 0m15.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m17.0s DUMP: 218b1a7a1eecec76de6d9afe585a84f8 - 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-cache', 'show', '--no-all-versions', 'python-mdanalysis-doc'] 0m17.3s DUMP: Package: python-mdanalysis-doc Source: mdanalysis Version: 2.9.0-12 Installed-Size: 23571 Maintainer: Debichem Team Architecture: all Depends: libjs-mathjax, libjs-sphinxdoc (>= 8.1) Description-en: analyse molecular dynamics files and trajectories ( documentation) MDAnalysis is a Python library for the analysis of computer simulations of many-body systems at the molecular scale, spanning use cases from interactions of drugs with proteins to novel materials. It is widely used in the scientific community and is written by scientists for scientists. . MDAnalysis allows one to read particle-based trajectories (including individual coordinate frames such as biomolecules in the PDB format) and access the atomic coordinates through NumPy arrays. This provides a flexible and relatively fast framework for complex analysis tasks. In addition, powerful atom selection commands are implemented. Trajectories can also be manipulated (for instance, fit to a reference structure) and written out. . It works with a wide range of popular simulation packages including Gromacs, Amber, NAMD, CHARMM, DL_Poly, HooMD, LAMMPS and many others ?? see the lists of supported trajectory formats and topology formats. MDAnalysis also includes widely used analysis algorithms in the MDAnalysis.analysis module. . The MDAnalysis project uses an open governance model and is fiscally sponsored by NumFOCUS. . This is the documentation package for MDAnalysis. Description-md5: 5afe353b3749292e390f4d109f4a2920 Multi-Arch: foreign Homepage: https://www.mdanalysis.org/ Section: doc Priority: optional Filename: pool/main/m/mdanalysis/python-mdanalysis-doc_2.9.0-12_all.deb Size: 3504296 MD5sum: 8cbe3f1778e71d85e1eaa332f34fa599 SHA256: 767eabd05ace7fc18bf8cc322fab3728368e95f3644add4c19073b2f35ed2b31 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-cache', 'show', '--no-all-versions', 'python-mdanalysis-doc'] 0m17.3s INFO: apt-cache knows about the following packages: python-mdanalysis-doc 0m17.3s INFO: Running scripts pre_install 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_database-server'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_database-server'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_exceptions'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_exceptions'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_extras'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_extras'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-cache', 'policy'] 0m17.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-cache', 'policy'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-cache', 'policy', 'python-mdanalysis-doc'] 0m17.4s DUMP: python-mdanalysis-doc: Installed: 2.9.0-12 Candidate: 2.9.0-12 Version table: *** 2.9.0-12 500 500 http://deb.debian.org/debian forky/main amd64 Packages 100 /var/lib/dpkg/status 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-cache', 'policy', 'python-mdanalysis-doc'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-get', '-y', 'install', 'python-mdanalysis-doc'] 0m18.1s DUMP: Reading package lists... Building dependency tree... Reading state information... python-mdanalysis-doc is already the newest version (2.9.0-12). The following packages were automatically installed and are no longer required: libjs-jquery libjs-underscore Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m18.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-get', '-y', 'install', 'python-mdanalysis-doc'] 0m18.1s INFO: Running scripts post_install 0m18.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_install_exceptions'] 0m18.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_install_exceptions'] 0m18.1s INFO: Running scripts post_distupgrade 0m18.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m18.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m18.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_distupgrade_exceptions'] 0m18.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_distupgrade_exceptions'] 0m18.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m18.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m18.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m18.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m18.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_distupgrade_zz_backports'] 0m18.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_distupgrade_zz_backports'] 0m18.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqerc8os1'] 0m18.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqerc8os1'] 0m18.9s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpqerc8os1 to sid 0m18.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m18.9s INFO: Running scripts pre_distupgrade 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_distupgrade_exceptions'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_distupgrade_exceptions'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m18.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m18.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-get', 'update'] 0m22.0s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [207 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.2 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7455 kB] Fetched 17.9 MB in 2s (7630 kB/s) Reading package lists... 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-get', 'update'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-get', '-yf', 'dist-upgrade'] 0m26.2s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libjs-jquery libjs-underscore Use 'sudo apt autoremove' to remove them. The following packages will be upgraded: apt bsdutils gcc-15-base libapt-pkg7.0 libblkid1 libgcc-s1 libjs-sphinxdoc liblastlog2-2 libmount1 libselinux1 libsemanage-common libsemanage2 libsmartcols1 libstdc++6 libuuid1 login login.defs mount passwd python-mdanalysis-doc sysvinit-utils util-linux 22 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 11.0 MB of archives. After this operation, 515 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.41.2-4 [38.7 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.41.2-4 [174 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.41.2-4 [211 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.41.2-4 [145 kB] Get:5 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.41.2-4 [1163 kB] Get:6 http://deb.debian.org/debian sid/main amd64 mount amd64 2.41.2-4 [163 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.9-2 [85.4 kB] Get:8 http://deb.debian.org/debian sid/main amd64 gcc-15-base amd64 15.2.0-5 [53.1 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 15.2.0-5 [71.7 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 15.2.0-5 [736 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libapt-pkg7.0 amd64 3.1.9 [1207 kB] Get:12 http://deb.debian.org/debian sid/main amd64 apt amd64 3.1.9 [1485 kB] Get:13 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.15-5 [34.8 kB] Get:14 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.41.2-4 [105 kB] Get:15 http://deb.debian.org/debian sid/main amd64 liblastlog2-2 amd64 2.41.2-4 [29.5 kB] Get:16 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.41.2-4 [93.5 kB] Get:17 http://deb.debian.org/debian sid/main amd64 login.defs all 1:4.18.0-2 [211 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.9-1 [7888 B] Get:19 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.9-1 [96.8 kB] Get:20 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.18.0-2 [1286 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libjs-sphinxdoc all 8.2.3-8 [27.6 kB] Get:22 http://deb.debian.org/debian sid/main amd64 python-mdanalysis-doc all 2.10.0-1 [3549 kB] Fetched 11.0 MB in 0s (128 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9893 files and directories currently installed.) Preparing to unpack .../libuuid1_2.41.2-4_amd64.deb ... Unpacking libuuid1:amd64 (2.41.2-4) over (2.41.2-1) ... Setting up libuuid1:amd64 (2.41.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9893 files and directories currently installed.) Preparing to unpack .../libblkid1_2.41.2-4_amd64.deb ... Unpacking libblkid1:amd64 (2.41.2-4) over (2.41.2-1) ... Setting up libblkid1:amd64 (2.41.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9893 files and directories currently installed.) Preparing to unpack .../libmount1_2.41.2-4_amd64.deb ... Unpacking libmount1:amd64 (2.41.2-4) over (2.41.2-1) ... Setting up libmount1:amd64 (2.41.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9893 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.41.2-4_amd64.deb ... Unpacking libsmartcols1:amd64 (2.41.2-4) over (2.41.2-1) ... Setting up libsmartcols1:amd64 (2.41.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9893 files and directories currently installed.) Preparing to unpack .../util-linux_2.41.2-4_amd64.deb ... Unpacking util-linux (2.41.2-4) over (2.41.2-1) ... Setting up util-linux (2.41.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9858 files and directories currently installed.) Preparing to unpack .../mount_2.41.2-4_amd64.deb ... Unpacking mount (2.41.2-4) over (2.41.2-1) ... Preparing to unpack .../libselinux1_3.9-2_amd64.deb ... Unpacking libselinux1:amd64 (3.9-2) over (3.8.1-1) ... Setting up libselinux1:amd64 (3.9-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9860 files and directories currently installed.) Preparing to unpack .../gcc-15-base_15.2.0-5_amd64.deb ... Unpacking gcc-15-base:amd64 (15.2.0-5) over (15.2.0-4) ... Setting up gcc-15-base:amd64 (15.2.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9860 files and directories currently installed.) Preparing to unpack .../libgcc-s1_15.2.0-5_amd64.deb ... Unpacking libgcc-s1:amd64 (15.2.0-5) over (15.2.0-4) ... Setting up libgcc-s1:amd64 (15.2.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9860 files and directories currently installed.) Preparing to unpack .../libstdc++6_15.2.0-5_amd64.deb ... Unpacking libstdc++6:amd64 (15.2.0-5) over (15.2.0-4) ... Setting up libstdc++6:amd64 (15.2.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9860 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_3.1.9_amd64.deb ... Unpacking libapt-pkg7.0:amd64 (3.1.9) over (3.1.8) ... Setting up libapt-pkg7.0:amd64 (3.1.9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9860 files and directories currently installed.) Preparing to unpack .../archives/apt_3.1.9_amd64.deb ... Unpacking apt (3.1.9) over (3.1.8) ... Setting up apt (3.1.9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9860 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.15-5_amd64.deb ... Unpacking sysvinit-utils (3.15-5) over (3.14-4) ... Setting up sysvinit-utils (3.15-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9860 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.41.2-4_amd64.deb ... Unpacking login (1:4.16.0-2+really2.41.2-4) over (1:4.16.0-2+really2.41.2-1) ... Preparing to unpack .../liblastlog2-2_2.41.2-4_amd64.deb ... Unpacking liblastlog2-2:amd64 (2.41.2-4) over (2.41.2-1) ... Setting up liblastlog2-2:amd64 (2.41.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9860 files and directories currently installed.) Preparing to unpack .../0-bsdutils_1%3a2.41.2-4_amd64.deb ... Unpacking bsdutils (1:2.41.2-4) over (1:2.41.2-1) ... Preparing to unpack .../1-login.defs_1%3a4.18.0-2_all.deb ... Unpacking login.defs (1:4.18.0-2) over (1:4.18.0-1) ... Preparing to unpack .../2-libsemanage-common_3.9-1_all.deb ... Unpacking libsemanage-common (3.9-1) over (3.8.1-1) ... Preparing to unpack .../3-libsemanage2_3.9-1_amd64.deb ... Unpacking libsemanage2:amd64 (3.9-1) over (3.8.1-1) ... Preparing to unpack .../4-passwd_1%3a4.18.0-2_amd64.deb ... Unpacking passwd (1:4.18.0-2) over (1:4.18.0-1) ... Preparing to unpack .../5-libjs-sphinxdoc_8.2.3-8_all.deb ... Unpacking libjs-sphinxdoc (8.2.3-8) over (8.2.3-7) ... Preparing to unpack .../6-python-mdanalysis-doc_2.10.0-1_all.deb ... Unpacking python-mdanalysis-doc (2.10.0-1) over (2.9.0-12) ... Setting up bsdutils (1:2.41.2-4) ... Setting up login.defs (1:4.18.0-2) ... Setting up libsemanage-common (3.9-1) ... Setting up libjs-sphinxdoc (8.2.3-8) ... Setting up mount (2.41.2-4) ... Setting up libsemanage2:amd64 (3.9-1) ... Setting up login (1:4.16.0-2+really2.41.2-4) ... Setting up python-mdanalysis-doc (2.10.0-1) ... Setting up passwd (1:4.18.0-2) ... Processing triggers for libc-bin (2.41-12) ... 0m26.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-get', '-yf', 'dist-upgrade'] 0m26.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m28.2s DUMP: 8fbe0afc1911b17cb5caf95a8300652a - 0m28.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m28.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-cache', 'show', '--no-all-versions', 'python-mdanalysis-doc'] 0m28.5s DUMP: Package: python-mdanalysis-doc Source: mdanalysis Version: 2.10.0-1 Installed-Size: 24715 Maintainer: Debichem Team Architecture: all Depends: libjs-mathjax, libjs-sphinxdoc (>= 8.2) Description-en: analyse molecular dynamics files and trajectories ( documentation) MDAnalysis is a Python library for the analysis of computer simulations of many-body systems at the molecular scale, spanning use cases from interactions of drugs with proteins to novel materials. It is widely used in the scientific community and is written by scientists for scientists. . MDAnalysis allows one to read particle-based trajectories (including individual coordinate frames such as biomolecules in the PDB format) and access the atomic coordinates through NumPy arrays. This provides a flexible and relatively fast framework for complex analysis tasks. In addition, powerful atom selection commands are implemented. Trajectories can also be manipulated (for instance, fit to a reference structure) and written out. . It works with a wide range of popular simulation packages including Gromacs, Amber, NAMD, CHARMM, DL_Poly, HooMD, LAMMPS and many others ?? see the lists of supported trajectory formats and topology formats. MDAnalysis also includes widely used analysis algorithms in the MDAnalysis.analysis module. . The MDAnalysis project uses an open governance model and is fiscally sponsored by NumFOCUS. . This is the documentation package for MDAnalysis. Description-md5: 5afe353b3749292e390f4d109f4a2920 Multi-Arch: foreign Homepage: https://www.mdanalysis.org/ Section: doc Priority: optional Filename: pool/main/m/mdanalysis/python-mdanalysis-doc_2.10.0-1_all.deb Size: 3549068 MD5sum: 888e54ea0cf913624c371be94366e268 SHA256: a63bd34804c09de559028398c87f6072478fff564cec4e040b443137dd792193 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-cache', 'show', '--no-all-versions', 'python-mdanalysis-doc'] 0m28.5s INFO: apt-cache knows about the following packages: python-mdanalysis-doc 0m28.5s INFO: Running scripts pre_install 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_database-server'] 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_database-server'] 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_exceptions'] 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_exceptions'] 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_extras'] 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_extras'] 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_foreign_architecture'] 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_foreign_architecture'] 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-cache', 'policy'] 0m28.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-cache', 'policy'] 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-cache', 'policy', 'python-mdanalysis-doc'] 0m28.6s DUMP: python-mdanalysis-doc: Installed: 2.10.0-1 Candidate: 2.10.0-1 Version table: *** 2.10.0-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-cache', 'policy', 'python-mdanalysis-doc'] 0m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-get', '-y', 'install', 'python-mdanalysis-doc'] 0m29.1s DUMP: Reading package lists... Building dependency tree... Reading state information... python-mdanalysis-doc is already the newest version (2.10.0-1). The following packages were automatically installed and are no longer required: libjs-jquery libjs-underscore Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-get', '-y', 'install', 'python-mdanalysis-doc'] 0m29.1s INFO: Running scripts post_install 0m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_install_exceptions'] 0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_install_exceptions'] 0m29.1s INFO: Running scripts post_distupgrade 0m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_distupgrade_exceptions'] 0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_distupgrade_exceptions'] 0m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m29.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_distupgrade_zz_backports'] 0m29.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_distupgrade_zz_backports'] 0m29.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqerc8os1'] 0m29.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqerc8os1'] 0m29.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqerc8os1'] 0m30.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqerc8os1'] 0m30.3s INFO: Running scripts pre_install 0m30.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_database-server'] 0m30.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_database-server'] 0m30.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_exceptions'] 0m30.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_exceptions'] 0m30.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_extras'] 0m30.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_extras'] 0m30.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_foreign_architecture'] 0m30.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_foreign_architecture'] 0m30.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m30.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m30.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-cache', 'policy'] 0m30.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-cache', 'policy'] 0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-cache', 'policy', 'python-mdanalysis-doc'] 0m30.4s DUMP: python-mdanalysis-doc: Installed: 2.10.0-1 Candidate: 2.10.0-1 Version table: *** 2.10.0-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m30.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-cache', 'policy', 'python-mdanalysis-doc'] 0m30.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-get', '-y', 'install', 'python-mdanalysis-doc=2.10.0-1'] 0m31.2s DUMP: Reading package lists... Building dependency tree... Reading state information... python-mdanalysis-doc is already the newest version (2.10.0-1). The following packages were automatically installed and are no longer required: libjs-jquery libjs-underscore Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-get', '-y', 'install', 'python-mdanalysis-doc=2.10.0-1'] 0m31.2s INFO: Running scripts post_install 0m31.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_install_exceptions'] 0m31.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_install_exceptions'] 0m31.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqerc8os1'] 0m31.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqerc8os1'] 0m32.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', '-ac', '--ignore-obsolete'] 0m33.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', '-ac', '--ignore-obsolete'] 0m33.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m33.2s DUMP: 0.15.9~deb12u1 0m33.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m33.2s INFO: Running adequate version 0.15.9~deb12u1 now. 0m33.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'python-mdanalysis-doc'] 0m33.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'python-mdanalysis-doc'] 0m33.2s INFO: Running scripts pre_remove 0m33.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m33.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_remove_exceptions'] 0m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/pre_remove_exceptions'] 0m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m34.0s DUMP: install ok installed apt apt 3.1.9 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.3-1 install ok installed bsdutils bsdutils 1:2.41.2-4 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed fonts-mathjax fonts-mathjax 2.7.9+dfsg-1 install ok installed gcc-14-base:amd64 gcc-14-base 14.3.0-8 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-5 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.9 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1 install ok installed libblkid1:amd64 libblkid1 2.41.2-4 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-5 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1 install ok installed libjs-jquery libjs-jquery 3.7.1+dfsg+~3.5.33-1 install ok installed libjs-mathjax libjs-mathjax 2.7.9+dfsg-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 8.2.3-8 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.2-4 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-2 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.2-4 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.9-2 install ok installed libsemanage-common libsemanage-common 3.9-1 install ok installed libsemanage2:amd64 libsemanage2 3.9-1 install ok installed libsepol2:amd64 libsepol2 3.9-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.2-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-8 install ok installed libssl3t64:amd64 libssl3t64 3.5.4-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-5 install ok installed libsystemd0:amd64 libsystemd0 258.1-1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 258.1-1 install ok installed libuuid1:amd64 libuuid1 2.41.2-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-2 install ok installed login login 1:4.16.0-2+really2.41.2-4 install ok installed login.defs login.defs 1:4.18.0-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41.2-4 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.4-1 install ok installed passwd passwd 1:4.18.0-2 install ok installed perl-base perl-base 5.40.1-6 install ok installed python-mdanalysis-doc python-mdanalysis-doc 2.10.0-1 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.15-5 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-5 install ok installed util-linux util-linux 2.41.2-4 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-get', 'remove', '--allow-remove-essential', 'fonts-mathjax', 'libjs-jquery', 'libjs-mathjax', 'libjs-sphinxdoc', 'libjs-underscore', 'python-mdanalysis-doc'] 0m34.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: fonts-mathjax libjs-jquery libjs-mathjax libjs-sphinxdoc libjs-underscore python-mdanalysis-doc 0 upgraded, 0 newly installed, 6 to remove and 0 not upgraded. After this operation, 73.4 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9867 files and directories currently installed.) Removing python-mdanalysis-doc (2.10.0-1) ... Removing libjs-mathjax (2.7.9+dfsg-1) ... Removing fonts-mathjax (2.7.9+dfsg-1) ... Removing libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Removing libjs-sphinxdoc (8.2.3-8) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 0m34.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-get', 'remove', '--allow-remove-essential', 'fonts-mathjax', 'libjs-jquery', 'libjs-mathjax', 'libjs-sphinxdoc', 'libjs-underscore', 'python-mdanalysis-doc'] 0m34.9s INFO: Running scripts post_remove 0m34.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_remove_exceptions'] 0m34.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_remove_exceptions'] 0m34.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'dpkg', '--purge', 'fonts-mathjax', 'libjs-jquery', 'libjs-mathjax', 'libjs-sphinxdoc', 'libjs-underscore'] 0m34.9s DUMP: dpkg: warning: ignoring request to remove fonts-mathjax which isn't installed (Reading database ... 4903 files and directories currently installed.) Purging configuration files for libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... dpkg: warning: ignoring request to remove libjs-mathjax which isn't installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed 0m34.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'dpkg', '--purge', 'fonts-mathjax', 'libjs-jquery', 'libjs-mathjax', 'libjs-sphinxdoc', 'libjs-underscore'] 0m34.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'dpkg', '--purge', 'python-mdanalysis-doc'] 0m34.9s DUMP: dpkg: warning: ignoring request to remove python-mdanalysis-doc which isn't installed 0m34.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'dpkg', '--purge', 'python-mdanalysis-doc'] 0m34.9s INFO: Running scripts post_purge 0m34.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_purge_exceptions'] 0m34.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_purge_exceptions'] 0m34.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'dpkg', '--purge', '--pending'] 0m35.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'dpkg', '--purge', '--pending'] 0m35.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'dpkg', '--remove', '--pending'] 0m35.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'dpkg', '--remove', '--pending'] 0m35.0s INFO: Running scripts post_test 0m35.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_test_exceptions'] 0m35.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'tmp/scripts/post_test_exceptions'] 0m35.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqerc8os1'] 0m35.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpqerc8os1'] 0m35.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'dpkg-divert', '--list'] 0m35.3s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m35.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'dpkg-divert', '--list'] 0m35.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-get', 'clean'] 0m35.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpqerc8os1', 'apt-get', 'clean'] 0m35.3s DEBUG: Recording chroot state 0m36.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqerc8os1/dev/shm'] 0m36.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqerc8os1/dev/shm'] 0m36.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqerc8os1/dev/console'] 0m36.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqerc8os1/dev/console'] 0m36.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqerc8os1/dev/ptmx'] 0m36.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqerc8os1/dev/ptmx'] 0m36.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqerc8os1/dev/pts'] 0m36.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqerc8os1/dev/pts'] 0m36.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpqerc8os1/proc'] 0m36.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpqerc8os1/proc'] 0m36.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpqerc8os1'] 0m36.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpqerc8os1'] 0m36.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpqerc8os1 0m36.3s INFO: PASS: Upgrading between Debian distributions. 0m36.3s INFO: PASS: All tests. 0m36.3s INFO: piuparts run ends. ret=0 End: 2025-10-22 04:52:34 GMT