Start: 2024-07-31 22:54:24 GMT [stable] Package: python3-pychopper Source: pychopper Version: 2.5.0-1 Installed-Size: 345 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-edlib, python3-matplotlib, python3-pandas, python3-parasail, python3-pytest, python3-seaborn, python3-six, python3-sphinx, python3-sphinx-rtd-theme, python3-tqdm, python3:any Description: identify, orient and trim full-length Nanopore cDNA reads Homepage: https://github.com/nanoporetech/pychopper Description-md5: c82f4d6ea954d4a2adb49d0cbebcb404 Section: python Priority: optional Filename: pool/main/p/pychopper/python3-pychopper_2.5.0-1_all.deb Size: 120876 MD5sum: 0e56710534a50d13dff6f4e54123dc86 SHA256: a5c2928acdae982625e6020d04f1cfae9bc1a7359ca43efb0b763cbd297f51c4 [testing] Package: python3-pychopper Source: pychopper Version: 2.7.2-1 Installed-Size: 407 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-biopython, python3-matplotlib, python3-numpy, python3-pandas, python3-parasail, python3-pytest, python3-six, python3-tqdm, python3:any Description: identify, orient and trim full-length Nanopore cDNA reads Homepage: https://github.com/epi2me-labs/pychopper Description-md5: c82f4d6ea954d4a2adb49d0cbebcb404 Section: python Priority: optional Filename: pool/main/p/pychopper/python3-pychopper_2.7.2-1_all.deb Size: 136472 MD5sum: a2872c13535cb005fc89782c27007558 SHA256: ed6c2d1838529fd4af9a863753b50575ee0ea8a70c20fc3c7a1315a3ecad49b0 [sid] Package: python3-pychopper Source: pychopper Version: 2.7.10-1 Installed-Size: 405 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-biopython, python3-matplotlib, python3-numpy, python3-pandas, python3-parasail, python3-pysam, python3-pytest, python3-tqdm, python3:any Description: identify, orient and trim full-length Nanopore cDNA reads Homepage: https://github.com/epi2me-labs/pychopper Description-md5: c2116885230163a610c0268475202885 Section: python Priority: optional Filename: pool/main/p/pychopper/python3-pychopper_2.7.10-1_all.deb Size: 136960 MD5sum: 450b7263b78508570f01cde695312e99 SHA256: 52549e35b4289726c20970a7050eb5840f7e9f384a68a2878c92ec37efd909b1 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat --apt python3-pychopper=2.7.10-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat --apt python3-pychopper=2.7.10-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-31-amd64 #1 SMP Debian 5.10.221-1 (2024-07-14) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmph2ehoday 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmph2ehoday 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmph2ehoday', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmph2ehoday', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmph2ehoday/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmph2ehoday/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmph2ehoday/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmph2ehoday/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmph2ehoday/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmph2ehoday/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmph2ehoday/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmph2ehoday/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmph2ehoday/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmph2ehoday/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmph2ehoday/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmph2ehoday/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmph2ehoday/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-get', 'update'] 0m1.5s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Reading package lists... 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-get', 'update'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-get', '-yf', 'dist-upgrade'] 0m2.0s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-get', '-yf', 'dist-upgrade'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.2s DUMP: e0568dca630aa17b9cacee75afdb778e - 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.2s INFO: Running scripts post_setup 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_setup_dummy_users'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_setup_dummy_users'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_setup_forbid_home'] 0m3.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_setup_forbid_home'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_setup_minimize'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_setup_minimize'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_setup_zz_backports'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_setup_zz_backports'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.6s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u10 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u2 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u10 install ok installed libc6:amd64 libc6 2.31-13+deb11u10 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u5 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u2 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u2 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u5 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u5 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u2 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u2 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u2 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.6s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat 0m3.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2ehoday'] 0m4.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2ehoday'] 0m4.1s INFO: Running scripts is_testable 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/is_testable_uninstallable'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/is_testable_uninstallable'] 0m4.1s INFO: Running scripts pre_test 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_test_exceptions'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_test_exceptions'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_test_root_password'] 0m4.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_test_root_password'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-cache', 'show', '--no-all-versions', 'python3-pychopper'] 0m4.4s DUMP: Package: python3-pychopper Source: pychopper Version: 2.5.0-1 Installed-Size: 345 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-edlib, python3-matplotlib, python3-pandas, python3-parasail, python3-pytest, python3-seaborn, python3-six, python3-sphinx, python3-sphinx-rtd-theme, python3-tqdm, python3:any Description-en: identify, orient and trim full-length Nanopore cDNA reads Pychopper v2 is a Python module to identify, orient and trim full-length Nanopore cDNA reads. It is also able to rescue fused reads and provides the script 'cdna_classifier.py'. The general approach of Pychopper v2 is the following: . * Pychopper first identifies alignment hits of the primers across the length of the sequence. The default method for doing this is using nhmmscan with the pre-trained strand specific profile HMMs, included with the package. Alternatively, one can use the edlib backend, which uses a combination of global and local alignment to identify the primers within the read. * After identifying the primer hits by either of the backends, the reads are divided into segments defined by two consecutive primer hits. The score of a segment is its length if the configuration of the flanking primer hits is valid (such as SPP,-VNP for forward reads) or zero otherwise. * The segments are assigned to rescued reads using a dynamic programming algorithm maximizing the sum of used segment scores (hence the amount of rescued bases). A crucial observation about the algorithm is that if a segment is included as a rescued read, then the next segment must be excluded as one of the primer hits defining it was "used up" by the previous segment. This put constraints on the dynamic programming graph. The arrows in read define the optimal path for rescuing two fused reads with the a total score of l1 + l3. . A crucial parameter of Pychopper v2 is -q, which determines the stringency of primer alignment (E-value in the case of the pHMM backend). This can be explicitly specified by the user, however by default it is optimized on a random sample of input reads to produce the maximum number of classified reads. Description-md5: c82f4d6ea954d4a2adb49d0cbebcb404 Homepage: https://github.com/nanoporetech/pychopper Section: python Priority: optional Filename: pool/main/p/pychopper/python3-pychopper_2.5.0-1_all.deb Size: 120876 MD5sum: 0e56710534a50d13dff6f4e54123dc86 SHA256: a5c2928acdae982625e6020d04f1cfae9bc1a7359ca43efb0b763cbd297f51c4 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-cache', 'show', '--no-all-versions', 'python3-pychopper'] 0m4.4s INFO: apt-cache knows about the following packages: python3-pychopper 0m4.4s INFO: Running scripts pre_install 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_database-server'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_database-server'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_exceptions'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_exceptions'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_extras'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_extras'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-cache', 'policy'] 0m4.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.10,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-cache', 'policy'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-cache', 'policy', 'python3-pychopper'] 0m4.5s DUMP: python3-pychopper: Installed: (none) Candidate: 2.5.0-1 Version table: 2.5.0-1 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-cache', 'policy', 'python3-pychopper'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-get', '-y', 'install', 'python3-pychopper'] 0m50.3s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: blt ca-certificates docutils-common fontconfig-config fonts-font-awesome fonts-lato fonts-lyx libblas3 libbrotli1 libbsd0 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libgdbm-compat4 libgdbm6 libgfortran5 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libmd0 libmpdec3 libncursesw6 libparasail-dev libparasail3 libperl5.32 libpng16-16 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 libsqlite3-0 libtcl8.6 libtiff5 libtk8.6 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 mailcap media-types mime-support openssl perl perl-modules-5.32 python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-attr python3-babel python3-certifi python3-chardet python3-cycler python3-dateutil python3-decorator python3-distutils python3-docutils python3-edlib python3-idna python3-imagesize python3-importlib-metadata python3-iniconfig python3-jinja2 python3-kiwisolver python3-lib2to3 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-parasail python3-pil python3-pkg-resources python3-pluggy python3-py python3-pygments python3-pyparsing python3-pytest python3-requests python3-roman python3-scipy python3-seaborn python3-six python3-snowballstemmer python3-sphinx python3-sphinx-rtd-theme python3-tk python3-toml python3-tqdm python3-tz python3-urllib3 python3-wheel python3-zipp python3.9 python3.9-minimal readline-common sensible-utils sgml-base sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5 ttf-bitstream-vera ucf x11-common xml-core Suggested packages: blt-demo gdbm-l10n libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-venv python-attr-doc python-cycler-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-jinja2-doc dvipng ffmpeg ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-nose python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft gcc gfortran python-numpy-doc python3-dev python3-numpy-dbg python-pandas-doc python3-statsmodels python-pil-doc python3-pil-dbg python3-setuptools subversion python-pygments-doc python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python3-stemmer fonts-freefont-otf imagemagick-6.q16 latexmk libjs-mathjax sphinx-doc texlive-fonts-recommended texlive-plain-generic tix python3-tk-dbg python3.9-venv python3.9-doc binutils binfmt-support readline-doc sgml-base-doc debhelper Recommended packages: javascript-common libgpm2 bzip2 file xz-utils netbase libpaper-utils python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-xlwt python3-bs4 python3-html5lib python3-lxml python3-tables python3-numba python3-olefile g++ | c++-compiler python3-patsy make The following NEW packages will be installed: blt ca-certificates docutils-common fontconfig-config fonts-font-awesome fonts-lato fonts-lyx libblas3 libbrotli1 libbsd0 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libgdbm-compat4 libgdbm6 libgfortran5 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libmd0 libmpdec3 libncursesw6 libparasail-dev libparasail3 libperl5.32 libpng16-16 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 libsqlite3-0 libtcl8.6 libtiff5 libtk8.6 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 mailcap media-types mime-support openssl perl perl-modules-5.32 python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-attr python3-babel python3-certifi python3-chardet python3-cycler python3-dateutil python3-decorator python3-distutils python3-docutils python3-edlib python3-idna python3-imagesize python3-importlib-metadata python3-iniconfig python3-jinja2 python3-kiwisolver python3-lib2to3 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-parasail python3-pil python3-pkg-resources python3-pluggy python3-py python3-pychopper python3-pygments python3-pyparsing python3-pytest python3-requests python3-roman python3-scipy python3-seaborn python3-six python3-snowballstemmer python3-sphinx python3-sphinx-rtd-theme python3-tk python3-toml python3-tqdm python3-tz python3-urllib3 python3-wheel python3-zipp python3.9 python3.9-minimal readline-common sensible-utils sgml-base sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5 ttf-bitstream-vera ucf x11-common xml-core 0 upgraded, 126 newly installed, 0 to remove and 0 not upgraded. Need to get 71.3 MB of archives. After this operation, 312 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 perl-modules-5.32 all 5.32.1-4+deb11u3 [2823 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.19-2 [64.9 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.19-2 [44.7 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libperl5.32 amd64 5.32.1-4+deb11u3 [4121 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 perl amd64 5.32.1-4+deb11u3 [293 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 fonts-lato all 2.0-2.1 [2696 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 mailcap all 3.69 [31.7 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 mime-support all 3.66 [10.9 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.2+20201114-2+deb11u2 [132 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 sgml-base all 1.30 [15.1 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:25 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1w-0+deb11u1 [859 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 libtcl8.6 amd64 8.6.11+dfsg-1 [1018 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1+deb11u1 [418 kB] Get:32 http://deb.debian.org/debian bullseye/main amd64 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get:33 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:34 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:35 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:36 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get:37 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1+deb11u1 [108 kB] Get:38 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:39 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:40 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1+deb11u2 [311 kB] Get:41 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1+deb11u2 [772 kB] Get:42 http://deb.debian.org/debian bullseye/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:43 http://deb.debian.org/debian bullseye/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:44 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get:45 http://deb.debian.org/debian bullseye/main amd64 x11-common all 1:7.7+22 [252 kB] Get:46 http://deb.debian.org/debian bullseye/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:47 http://deb.debian.org/debian bullseye/main amd64 libtk8.6 amd64 8.6.11-2 [780 kB] Get:48 http://deb.debian.org/debian bullseye/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get:49 http://deb.debian.org/debian bullseye/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get:50 http://deb.debian.org/debian bullseye/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get:51 http://deb.debian.org/debian bullseye/main amd64 docutils-common all 0.16+dfsg-4 [129 kB] Get:52 http://deb.debian.org/debian bullseye/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get:53 http://deb.debian.org/debian bullseye/main amd64 fonts-lyx all 2.3.6-1 [205 kB] Get:54 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3+deb11u1 [153 kB] Get:55 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get:56 http://deb.debian.org/debian bullseye/main amd64 libquadmath0 amd64 10.2.1-6 [145 kB] Get:57 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get:58 http://deb.debian.org/debian bullseye/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get:59 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:60 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get:61 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get:62 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-ui all 1.12.1+dfsg-8+deb11u2 [232 kB] Get:63 http://deb.debian.org/debian bullseye/main amd64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get:64 http://deb.debian.org/debian bullseye/main amd64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get:65 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3+deb11u1 [2166 kB] Get:66 http://deb.debian.org/debian bullseye/main amd64 liblbfgsb0 amd64 3.0+dfsg.3-9 [28.5 kB] Get:67 http://deb.debian.org/debian bullseye/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get:68 http://deb.debian.org/debian bullseye/main amd64 libparasail3 amd64 2.4.3+dfsg-2 [1536 kB] Get:69 http://deb.debian.org/debian bullseye/main amd64 libparasail-dev amd64 2.4.3+dfsg-2 [131 kB] Get:70 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1+deb11u2 [259 kB] Get:71 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1+deb11u5 [290 kB] Get:72 http://deb.debian.org/debian bullseye/main amd64 libwebpdemux2 amd64 0.6.1-2.1+deb11u2 [87.8 kB] Get:73 http://deb.debian.org/debian bullseye/main amd64 libwebpmux3 amd64 0.6.1-2.1+deb11u2 [97.7 kB] Get:74 http://deb.debian.org/debian bullseye/main amd64 python-babel-localedata all 2.8.0+dfsg.1-7 [4997 kB] Get:75 http://deb.debian.org/debian bullseye/main amd64 python-matplotlib-data all 3.3.4-1 [4153 kB] Get:76 http://deb.debian.org/debian bullseye/main amd64 python3-alabaster all 0.7.8-1.1 [18.6 kB] Get:77 http://deb.debian.org/debian bullseye/main amd64 python3-attr all 20.3.0-1 [52.9 kB] Get:78 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get:79 http://deb.debian.org/debian bullseye/main amd64 python3-tz all 2021.1-1 [34.8 kB] Get:80 http://deb.debian.org/debian bullseye/main amd64 python3-babel all 2.8.0+dfsg.1-7 [100 kB] Get:81 http://deb.debian.org/debian bullseye/main amd64 python3-certifi all 2020.6.20-1 [151 kB] Get:82 http://deb.debian.org/debian bullseye/main amd64 python3-chardet all 4.0.0-1 [99.0 kB] Get:83 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get:84 http://deb.debian.org/debian bullseye/main amd64 python3-cycler all 0.10.0-3 [8084 B] Get:85 http://deb.debian.org/debian bullseye/main amd64 python3-dateutil all 2.8.1-6 [79.2 kB] Get:86 http://deb.debian.org/debian bullseye/main amd64 python3-decorator all 4.4.2-2 [15.8 kB] Get:87 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get:88 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get:89 http://deb.debian.org/debian bullseye/main amd64 python3-roman all 2.0.0-5 [9064 B] Get:90 http://deb.debian.org/debian bullseye/main amd64 python3-docutils all 0.16+dfsg-4 [384 kB] Get:91 http://deb.debian.org/debian bullseye/main amd64 python3-edlib amd64 1.2.6-1 [58.7 kB] Get:92 http://deb.debian.org/debian bullseye/main amd64 python3-idna all 2.10-1+deb11u1 [39.0 kB] Get:93 http://deb.debian.org/debian bullseye/main amd64 python3-imagesize all 1.2.0-2 [5824 B] Get:94 http://deb.debian.org/debian bullseye/main amd64 python3-more-itertools all 4.2.0-3 [42.7 kB] Get:95 http://deb.debian.org/debian bullseye/main amd64 python3-zipp all 1.0.0-3 [6060 B] Get:96 http://deb.debian.org/debian bullseye/main amd64 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get:97 http://deb.debian.org/debian bullseye/main amd64 python3-iniconfig all 1.1.1-1 [6308 B] Get:98 http://deb.debian.org/debian bullseye/main amd64 python3-markupsafe amd64 1.1.1-1+b3 [15.2 kB] Get:99 http://deb.debian.org/debian bullseye/main amd64 python3-jinja2 all 2.11.3-1 [114 kB] Get:100 http://deb.debian.org/debian bullseye/main amd64 python3-kiwisolver amd64 1.3.1-1+b1 [55.7 kB] Get:101 http://deb.debian.org/debian bullseye/main amd64 python3-pyparsing all 2.4.7-1 [109 kB] Get:102 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get:103 http://deb.debian.org/debian bullseye/main amd64 python3-pil amd64 8.1.2+dfsg-0.3+deb11u2 [446 kB] Get:104 http://deb.debian.org/debian bullseye/main amd64 python3-matplotlib amd64 3.3.4-1 [4163 kB] Get:105 http://deb.debian.org/debian bullseye/main amd64 python3-packaging all 20.9-2 [33.5 kB] Get:106 http://deb.debian.org/debian bullseye/main amd64 python3-pandas-lib amd64 1.1.5+dfsg-2 [3287 kB] Get:107 http://deb.debian.org/debian bullseye/main amd64 python3-pandas all 1.1.5+dfsg-2 [2096 kB] Get:108 http://deb.debian.org/debian bullseye/main amd64 python3-wheel all 0.34.2-1 [24.0 kB] Get:109 http://deb.debian.org/debian bullseye/main amd64 python3-parasail all 1.2.3-1 [36.8 kB] Get:110 http://deb.debian.org/debian bullseye/main amd64 python3-pluggy all 0.13.0-6 [22.3 kB] Get:111 http://deb.debian.org/debian bullseye/main amd64 python3-py all 1.10.0-1 [94.2 kB] Get:112 http://deb.debian.org/debian bullseye/main amd64 python3-toml all 0.10.1-1 [15.9 kB] Get:113 http://deb.debian.org/debian bullseye/main amd64 python3-pytest all 6.0.2-2 [211 kB] Get:114 http://deb.debian.org/debian bullseye/main amd64 python3-scipy amd64 1.6.0-2 [12.3 MB] Get:115 http://deb.debian.org/debian bullseye/main amd64 python3-tk amd64 3.9.2-1 [101 kB] Get:116 http://deb.debian.org/debian bullseye/main amd64 python3-seaborn all 0.11.1-1 [206 kB] Get:117 http://deb.debian.org/debian bullseye/main amd64 sphinx-common all 3.4.3-2 [578 kB] Get:118 http://deb.debian.org/debian bullseye/main amd64 python3-pygments all 2.7.1+dfsg-2.1 [657 kB] Get:119 http://deb.debian.org/debian bullseye/main amd64 python3-urllib3 all 1.26.5-1~exp1 [114 kB] Get:120 http://deb.debian.org/debian bullseye/main amd64 python3-requests all 2.25.1+dfsg-2 [69.3 kB] Get:121 http://deb.debian.org/debian bullseye/main amd64 python3-snowballstemmer all 2.1.0-1 [58.7 kB] Get:122 http://deb.debian.org/debian bullseye/main amd64 python3-sphinx all 3.4.3-2 [545 kB] Get:123 http://deb.debian.org/debian bullseye/main amd64 sphinx-rtd-theme-common all 0.5.1+dfsg-1 [995 kB] Get:124 http://deb.debian.org/debian bullseye/main amd64 python3-sphinx-rtd-theme all 0.5.1+dfsg-1 [20.9 kB] Get:125 http://deb.debian.org/debian bullseye/main amd64 python3-tqdm all 4.57.0-2 [93.2 kB] Get:126 http://deb.debian.org/debian bullseye/main amd64 python3-pychopper all 2.5.0-1 [121 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 71.3 MB in 3s (27.5 MB/s) Selecting previously unselected package perl-modules-5.32. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6674 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.32_5.32.1-4+deb11u3_all.deb ... Unpacking perl-modules-5.32 (5.32.1-4+deb11u3) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.19-2_amd64.deb ... Unpacking libgdbm6:amd64 (1.19-2) ... Selecting previously unselected package libgdbm-compat4:amd64. 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Unpacking python3-kiwisolver (1.3.1-1+b1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../079-python3-pyparsing_2.4.7-1_all.deb ... Unpacking python3-pyparsing (2.4.7-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../080-python3-numpy_1%3a1.19.5-1_amd64.deb ... Unpacking python3-numpy (1:1.19.5-1) ... Selecting previously unselected package python3-pil:amd64. Preparing to unpack .../081-python3-pil_8.1.2+dfsg-0.3+deb11u2_amd64.deb ... Unpacking python3-pil:amd64 (8.1.2+dfsg-0.3+deb11u2) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../082-python3-matplotlib_3.3.4-1_amd64.deb ... Unpacking python3-matplotlib (3.3.4-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../083-python3-packaging_20.9-2_all.deb ... Unpacking python3-packaging (20.9-2) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../084-python3-pandas-lib_1.1.5+dfsg-2_amd64.deb ... Unpacking python3-pandas-lib:amd64 (1.1.5+dfsg-2) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../085-python3-pandas_1.1.5+dfsg-2_all.deb ... Unpacking python3-pandas (1.1.5+dfsg-2) ... Selecting previously unselected package python3-wheel. Preparing to unpack .../086-python3-wheel_0.34.2-1_all.deb ... Unpacking python3-wheel (0.34.2-1) ... Selecting previously unselected package python3-parasail. Preparing to unpack .../087-python3-parasail_1.2.3-1_all.deb ... Unpacking python3-parasail (1.2.3-1) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../088-python3-pluggy_0.13.0-6_all.deb ... Unpacking python3-pluggy (0.13.0-6) ... Selecting previously unselected package python3-py. Preparing to unpack .../089-python3-py_1.10.0-1_all.deb ... Unpacking python3-py (1.10.0-1) ... Selecting previously unselected package python3-toml. Preparing to unpack .../090-python3-toml_0.10.1-1_all.deb ... Unpacking python3-toml (0.10.1-1) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../091-python3-pytest_6.0.2-2_all.deb ... Unpacking python3-pytest (6.0.2-2) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../092-python3-scipy_1.6.0-2_amd64.deb ... Unpacking python3-scipy (1.6.0-2) ... Selecting previously unselected package python3-tk:amd64. Preparing to unpack .../093-python3-tk_3.9.2-1_amd64.deb ... Unpacking python3-tk:amd64 (3.9.2-1) ... Selecting previously unselected package python3-seaborn. Preparing to unpack .../094-python3-seaborn_0.11.1-1_all.deb ... Unpacking python3-seaborn (0.11.1-1) ... Selecting previously unselected package sphinx-common. Preparing to unpack .../095-sphinx-common_3.4.3-2_all.deb ... Unpacking sphinx-common (3.4.3-2) ... Selecting previously unselected package python3-pygments. Preparing to unpack .../096-python3-pygments_2.7.1+dfsg-2.1_all.deb ... Unpacking python3-pygments (2.7.1+dfsg-2.1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../097-python3-urllib3_1.26.5-1~exp1_all.deb ... Unpacking python3-urllib3 (1.26.5-1~exp1) ... Selecting previously unselected package python3-requests. Preparing to unpack .../098-python3-requests_2.25.1+dfsg-2_all.deb ... Unpacking python3-requests (2.25.1+dfsg-2) ... Selecting previously unselected package python3-snowballstemmer. Preparing to unpack .../099-python3-snowballstemmer_2.1.0-1_all.deb ... Unpacking python3-snowballstemmer (2.1.0-1) ... Selecting previously unselected package python3-sphinx. Preparing to unpack .../100-python3-sphinx_3.4.3-2_all.deb ... Unpacking python3-sphinx (3.4.3-2) ... Selecting previously unselected package sphinx-rtd-theme-common. Preparing to unpack .../101-sphinx-rtd-theme-common_0.5.1+dfsg-1_all.deb ... Unpacking sphinx-rtd-theme-common (0.5.1+dfsg-1) ... Selecting previously unselected package python3-sphinx-rtd-theme. Preparing to unpack .../102-python3-sphinx-rtd-theme_0.5.1+dfsg-1_all.deb ... Unpacking python3-sphinx-rtd-theme (0.5.1+dfsg-1) ... Selecting previously unselected package python3-tqdm. Preparing to unpack .../103-python3-tqdm_4.57.0-2_all.deb ... Unpacking python3-tqdm (4.57.0-2) ... Selecting previously unselected package python3-pychopper. Preparing to unpack .../104-python3-pychopper_2.5.0-1_all.deb ... Unpacking python3-pychopper (2.5.0-1) ... Setting up media-types (4.0.0) ... Setting up liblcms2-2:amd64 (2.12~rc1-2) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up ttf-bitstream-vera (1.10-8.1) ... Setting up fonts-lato (2.0-2.1) ... Setting up fonts-lyx (2.3.6-1) ... Setting up perl-modules-5.32 (5.32.1-4+deb11u3) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libsqlite3-0:amd64 (3.34.1-3) ... Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libdeflate0:amd64 (1.7-1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up python-babel-localedata (2.8.0+dfsg.1-7) ... Setting up libparasail3:amd64 (2.4.3+dfsg-2) ... Setting up libblas3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up libx11-data (2:1.7.2-1+deb11u2) ... Setting up libquadmath0:amd64 (10.2.1-6) ... Setting up libimagequant0:amd64 (2.12.2-1.1) ... Setting up libpng16-16:amd64 (1.6.37-3) ... Setting up libtcl8.6:amd64 (8.6.11+dfsg-1) ... Setting up libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Setting up libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up sgml-base (1.30) ... Setting up libtiff5:amd64 (4.2.0-1+deb11u5) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up python-matplotlib-data (3.3.4-1) ... Setting up openssl (1.1.1w-0+deb11u1) ... Setting up libwebpmux3:amd64 (0.6.1-2.1+deb11u2) ... Setting up libbsd0:amd64 (0.11.3-1+deb11u1) ... Setting up readline-common (8.1-1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (0.5.1+dfsg-1) ... Setting up libgdbm6:amd64 (1.19-2) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3) ... Setting up libwebpdemux2:amd64 (0.6.1-2.1+deb11u2) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libparasail-dev:amd64 (2.4.3+dfsg-2) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libjs-jquery-ui (1.12.1+dfsg-8+deb11u2) ... Setting up libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Setting up libgdbm-compat4:amd64 (1.19-2) ... Setting up ucf (3.0043) ... Setting up libperl5.32:amd64 (5.32.1-4+deb11u3) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up xml-core (0.18+nmu1) ... Setting up libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up libxext6:amd64 (2:1.3.3-1.1) ... Setting up perl (5.32.1-4+deb11u3) ... Setting up sphinx-common (3.4.3-2) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up mailcap (3.69) ... Setting up python3.9 (3.9.2-1) ... Setting up libxft2:amd64 (2.3.2-2) ... Setting up mime-support (3.66) ... Setting up libtk8.6:amd64 (8.6.11-2) ... Setting up python3 (3.9.2-3) ... Setting up python3-markupsafe (1.1.1-1+b3) ... Setting up python3-wheel (0.34.2-1) ... Setting up python3-tz (2021.1-1) ... Setting up python3-six (1.16.0-2) ... Setting up python3-pil:amd64 (8.1.2+dfsg-0.3+deb11u2) ... Setting up python3-roman (2.0.0-5) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-jinja2 (2.11.3-1) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-certifi (2020.6.20-1) ... Setting up python3-snowballstemmer (2.1.0-1) ... Setting up python3-cycler (0.10.0-3) ... Setting up python3-kiwisolver (1.3.1-1+b1) ... Setting up python3-idna (2.10-1+deb11u1) ... Setting up python3-toml (0.10.1-1) ... Setting up python3-urllib3 (1.26.5-1~exp1) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-edlib (1.2.6-1) ... Setting up python3-imagesize (1.2.0-2) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-iniconfig (1.1.1-1) ... Setting up python3-attr (20.3.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up python3-py (1.10.0-1) ... Setting up python3-babel (2.8.0+dfsg.1-7) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-alabaster (0.7.8-1.1) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-tqdm (4.57.0-2) ... Setting up python3-tk:amd64 (3.9.2-1) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-pygments (2.7.1+dfsg-2.1) ... Setting up python3-packaging (20.9-2) ... Setting up python3-chardet (4.0.0-1) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-matplotlib (3.3.4-1) ... Setting up python3-scipy (1.6.0-2) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up python3-pandas-lib:amd64 (1.1.5+dfsg-2) ... Setting up python3-parasail (1.2.3-1) ... Setting up python3-pandas (1.1.5+dfsg-2) ... Setting up python3-pluggy (0.13.0-6) ... Setting up python3-pytest (6.0.2-2) ... Setting up python3-seaborn (0.11.1-1) ... Processing triggers for libc-bin (2.31-13+deb11u10) ... Processing triggers for sgml-base (1.30) ... Setting up docutils-common (0.16+dfsg-4) ... Processing triggers for sgml-base (1.30) ... Setting up python3-docutils (0.16+dfsg-4) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-sphinx (3.4.3-2) ... Setting up python3-sphinx-rtd-theme (0.5.1+dfsg-1) ... Setting up python3-pychopper (2.5.0-1) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m50.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-get', '-y', 'install', 'python3-pychopper'] 0m50.3s INFO: Running scripts post_install 0m50.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_install_exceptions'] 0m50.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_install_exceptions'] 0m50.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2ehoday'] 0m51.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2ehoday'] 0m51.1s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmph2ehoday to testing 0m51.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m51.1s INFO: Running scripts pre_distupgrade 0m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m51.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m51.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_distupgrade_exceptions'] 0m51.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_distupgrade_exceptions'] 0m51.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m51.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m51.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m51.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m51.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m51.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m51.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-get', 'update'] 0m55.0s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [151 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8788 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [6109 kB] Fetched 15.0 MB in 3s (5350 kB/s) Reading package lists... 0m55.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-get', 'update'] 0m55.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-get', '-yf', 'dist-upgrade'] 3m37.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: docutils-common fonts-font-awesome fonts-lato libjson-perl libmpdec3 libparasail3 libperl5.32 libpython3.9-minimal libpython3.9-stdlib libtiff5 libwebp6 perl-modules-5.32 python3-alabaster python3-certifi python3-chardet python3-charset-normalizer python3-docutils python3-edlib python3-idna python3-imagesize python3-requests python3-roman python3-seaborn python3-snowballstemmer python3-sphinx python3-sphinx-rtd-theme python3-toml python3-urllib3 python3.9 python3.9-minimal sphinx-common sphinx-rtd-theme-common ucf Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libsemanage1 The following NEW packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-12 fonts-dejavu-core fonts-urw-base35 g++ g++-12 gcc gcc-12 gcc-12-base libasan8 libatomic1 libbinutils libboost-dev libboost1.74-dev libc-dev-bin libc6-dev libcap2 libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libexpat1-dev libffi8 libfile-find-rule-perl libfontenc1 libfribidi0 libgcc-12-dev libglib2.0-0 libgomp1 libgprofng0 libgraphite2-3 libharfbuzz0b libicu72 libisl23 libitm1 libjansson4 libjson-perl liblerc4 liblsan0 libmpc3 libmpfr6 libnsl-dev libnumber-compare-perl libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libparasail8 libperl5.36 libpython3-all-dev libpython3-dev libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libraqm0 libsemanage2 libsepol2 libssl3 libstdc++-12-dev libtext-glob-perl libtiff6 libtirpc-dev libtsan2 libubsan1 libwebp7 libxml2 libxsimd-dev libxslt1.1 linux-libc-dev perl-modules-5.36 python3-all python3-all-dev python3-appdirs python3-beniget python3-biopython python3-brotli python3-charset-normalizer python3-contourpy python3-dev python3-fonttools python3-fs python3-gast python3-lxml python3-lz4 python3-mpmath python3-pil.imagetk python3-ply python3-pythran python3-renderpm python3-reportlab python3-reportlab-accel python3-sympy python3-ufolib2 python3-unicodedata2 python3.11 python3.11-dev python3.11-minimal rpcsvc-proto unicode-data usrmerge util-linux-extra w3c-sgml-lib xfonts-encodings xfonts-utils zlib1g-dev The following packages will be upgraded: adduser apt base-files base-passwd bash bsdutils ca-certificates coreutils dash debconf debian-archive-keyring debianutils diffutils docutils-common dpkg e2fsprogs findutils fontconfig-config fonts-lyx gpgv grep gzip hostname init-system-helpers libacl1 libapt-pkg6.0 libattr1 libaudit-common libaudit1 libblas3 libblkid1 libbrotli1 libbsd0 libbz2-1.0 libc-bin libc6 libcap-ng0 libcom-err2 libcrypt1 libdb5.3 libdebconfclient0 libdeflate0 libexpat1 libext2fs2 libfontconfig1 libfreetype6 libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgfortran5 libgmp10 libgnutls30 libgpg-error0 libgssapi-krb5-2 libhogweed6 libidn2-0 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 liblz4-1 liblzma5 libmd0 libmount1 libncursesw6 libnettle8 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libparasail-dev libpcre2-8-0 libpcre3 libpng16-16 libpython3-stdlib libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libstdc++6 libsystemd0 libtasn1-6 libtcl8.6 libtinfo6 libtirpc-common libtirpc3 libtk8.6 libudev1 libunistring2 libuuid1 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxcb1 libxext6 libxft2 libxrender1 libxxhash0 libzstd1 login logsave lsb-base mailcap mawk media-types mount ncurses-base ncurses-bin openssl passwd perl perl-base python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-attr python3-babel python3-certifi python3-chardet python3-cycler python3-dateutil python3-decorator python3-distutils python3-docutils python3-edlib python3-idna python3-imagesize python3-importlib-metadata python3-iniconfig python3-jinja2 python3-kiwisolver python3-lib2to3 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-parasail python3-pil python3-pkg-resources python3-pluggy python3-py python3-pychopper python3-pygments python3-pyparsing python3-pytest python3-requests python3-roman python3-scipy python3-seaborn python3-six python3-snowballstemmer python3-sphinx python3-sphinx-rtd-theme python3-tk python3-toml python3-tqdm python3-tz python3-urllib3 python3-wheel python3-zipp readline-common sed sensible-utils sgml-base sphinx-common sphinx-rtd-theme-common sysvinit-utils tar ttf-bitstream-vera tzdata ucf util-linux x11-common zlib1g 196 upgraded, 111 newly installed, 1 to remove and 0 not upgraded. Need to get 253 MB of archives. After this operation, 867 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 base-files amd64 12.4+deb12u6 [70.8 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libc6 amd64 2.36-9+deb12u7 [2758 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libc-bin amd64 2.36-9+deb12u7 [607 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 gcc-12-base amd64 12.2.0-14 [37.5 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libgcc-s1 amd64 12.2.0-14 [49.9 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libblkid1 amd64 2.38.1-5+deb12u1 [147 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libpcre2-8-0 amd64 10.42-1 [261 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libselinux1 amd64 3.4-1+b6 [73.7 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libmount1 amd64 2.38.1-5+deb12u1 [165 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libsmartcols1 amd64 2.38.1-5+deb12u1 [107 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libaudit-common all 1:3.0.9-1 [10.4 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libcap-ng0 amd64 0.8.3-1+b3 [17.1 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libaudit1 amd64 1:3.0.9-1 [46.8 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 login amd64 1:4.13+dfsg1-1+b1 [616 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 util-linux-extra amd64 2.38.1-5+deb12u1 [110 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 util-linux amd64 2.38.1-5+deb12u1 [1176 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 liblzma5 amd64 5.4.1-0.2 [205 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libzstd1 amd64 1.5.4+dfsg2-5 [290 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 tar amd64 1.34+dfsg-1.2+deb12u1 [836 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 dpkg amd64 1.21.22 [1567 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 sysvinit-utils amd64 3.06-4 [31.0 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 lsb-base all 11.6 [4584 B] Get:23 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 debianutils amd64 5.7-0.5~deb12u1 [103 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 bash amd64 5.2.15-2+b7 [1490 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 bsdutils amd64 1:2.38.1-5+deb12u1 [94.3 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libgmp10 amd64 2:6.2.1+dfsg1-1.1 [563 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 coreutils amd64 9.1-1 [2897 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 dash amd64 0.5.12-2 [91.8 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 diffutils amd64 1:3.8-4 [352 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 findutils amd64 4.9.0-4 [636 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 grep amd64 3.8-5 [421 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 gzip amd64 1.12-1 [140 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 hostname amd64 3.23+nmu1 [10.5 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-4 [134 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 libtinfo6 amd64 6.4-4 [331 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 ncurses-bin amd64 6.4-4 [421 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.36 all 5.36.0-7+deb12u1 [2815 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.23-3 [72.2 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 libperl5.36 amd64 5.36.0-7+deb12u1 [4218 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.36.0-7+deb12u1 [239 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 perl-base amd64 5.36.0-7+deb12u1 [1608 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 libbz2-1.0 amd64 1.0.8-5+b1 [47.3 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 debconf all 1.5.82 [121 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 libpam0g amd64 1.5.2-6+deb12u1 [92.0 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 libcrypt1 amd64 1:4.4.33-2 [89.5 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 libdb5.3 amd64 5.3.28+dfsg2-1 [697 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.23-3 [48.2 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 zlib1g amd64 1:1.2.13.dfsg-1 [86.7 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 sed amd64 4.9-1 [329 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 libgpg-error0 amd64 1.46-1 [76.9 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 libgcrypt20 amd64 1.10.1-3 [696 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 libstdc++6 amd64 12.2.0-14 [614 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 liblz4-1 amd64 1.9.4-1 [62.9 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 libcap2 amd64 1:2.66-4 [27.0 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 libsystemd0 amd64 252.26-1~deb12u2 [332 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 libudev1 amd64 252.26-1~deb12u2 [108 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libxxhash0 amd64 0.8.1-1 [27.6 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 libapt-pkg6.0 amd64 2.6.1 [907 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 libnettle8 amd64 3.8.1-2 [288 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libhogweed6 amd64 3.8.1-2 [328 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 libunistring2 amd64 1.0-2 [437 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libidn2-0 amd64 2.3.3-1+b1 [124 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 libffi8 amd64 3.4.4-1 [22.9 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 libp11-kit0 amd64 0.24.1-2 [345 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libtasn1-6 amd64 4.19.0-2 [56.6 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 libgnutls30 amd64 3.7.9-2+deb12u3 [1405 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 libsemanage-common all 3.4-1 [21.6 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 libsepol2 amd64 3.4-2.1 [276 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 libsemanage2 amd64 3.4-1+b5 [89.9 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 passwd amd64 1:4.13+dfsg1-1+b1 [972 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 libpam-modules-bin amd64 1.5.2-6+deb12u1 [75.6 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 libpam-modules amd64 1.5.2-6+deb12u1 [291 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 adduser all 3.134 [183 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 gpgv amd64 2.2.40-1.1 [648 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 debian-archive-keyring all 2023.3+deb12u1 [161 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 libseccomp2 amd64 2.5.4-1+deb12u1 [46.8 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 apt amd64 2.6.1 [1373 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 libdebconfclient0 amd64 0.270 [9900 B] Get:80 http://deb.debian.org/debian bookworm/main amd64 base-passwd amd64 3.6.1 [60.0 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:82 http://deb.debian.org/debian bookworm/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:83 http://deb.debian.org/debian bookworm/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 usrmerge all 37~deb12u1 [13.3 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 init-system-helpers all 1.65.2 [49.8 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 ncurses-base all 6.4-4 [261 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 logsave amd64 1.47.0-2 [19.6 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 libext2fs2 amd64 1.47.0-2 [205 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 e2fsprogs amd64 1.47.0-2 [571 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 mount amd64 2.38.1-5+deb12u1 [134 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.13-1~deb12u1 [2022 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6+deb12u2 [814 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6+deb12u2 [2067 kB] Get:95 http://deb.debian.org/debian bookworm/main amd64 python3-tk amd64 3.11.2-3 [98.3 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.10.1-2 [15.2 MB] Get:97 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.4.0-1.1+deb12u1 [472 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 python3-pandas-lib amd64 1.5.3+dfsg-2 [3499 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 python3-matplotlib amd64 3.6.3-1+b1 [6921 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 python3-markupsafe amd64 2.1.2-1+b1 [13.2 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 python3-kiwisolver amd64 1.4.4-1+b1 [60.1 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 python3-edlib amd64 1.2.7-4+b1 [59.6 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 tzdata all 2024a-0+deb12u1 [297 kB] Get:109 http://deb.debian.org/debian bookworm/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [1035 kB] Get:110 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get:111 http://deb.debian.org/debian bookworm/main amd64 ttf-bitstream-vera all 1.10-8.2 [223 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 libfontenc1 amd64 1:1.1.4-1 [24.3 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:114 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5+deb12u3 [398 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:117 http://deb.debian.org/debian bookworm/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 fonts-urw-base35 all 20200910-7 [10.8 MB] Get:119 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2+deb12u2 [292 kB] Get:122 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2+deb12u2 [760 kB] Get:124 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:125 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB] Get:126 http://deb.debian.org/debian bookworm/main amd64 libtk8.6 amd64 8.6.13-2 [781 kB] Get:127 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get:129 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get:130 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:131 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:132 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-2 [837 kB] Get:133 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:134 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u1 [134 kB] Get:135 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u1 [332 kB] Get:136 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u1 [78.9 kB] Get:137 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u1 [32.4 kB] Get:138 http://deb.debian.org/debian bookworm/main amd64 libcom-err2 amd64 1.47.0-2 [19.8 kB] Get:139 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:140 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:141 http://deb.debian.org/debian bookworm/main amd64 libuuid1 amd64 2.38.1-5+deb12u1 [28.6 kB] Get:142 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6+deb12u2 [1799 kB] Get:143 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6+deb12u2 [573 kB] Get:144 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:145 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-14 [144 kB] Get:146 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get:147 http://deb.debian.org/debian bookworm/main amd64 libopenblas0-pthread amd64 0.3.21+ds-4 [6709 kB] Get:148 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:149 http://deb.debian.org/debian bookworm/main amd64 libisl23 amd64 0.25-1.1 [683 kB] Get:150 http://deb.debian.org/debian bookworm/main amd64 libmpfr6 amd64 4.2.0-1 [701 kB] Get:151 http://deb.debian.org/debian bookworm/main amd64 libmpc3 amd64 1.3.1-1 [51.5 kB] Get:152 http://deb.debian.org/debian bookworm/main amd64 cpp-12 amd64 12.2.0-14 [9764 kB] Get:153 http://deb.debian.org/debian bookworm/main amd64 cpp amd64 4:12.2.0-3 [6836 B] Get:154 http://deb.debian.org/debian bookworm/main amd64 libcc1-0 amd64 12.2.0-14 [41.7 kB] Get:155 http://deb.debian.org/debian bookworm/main amd64 binutils-common amd64 2.40-2 [2487 kB] Get:156 http://deb.debian.org/debian bookworm/main amd64 libbinutils amd64 2.40-2 [572 kB] Get:157 http://deb.debian.org/debian bookworm/main amd64 libctf-nobfd0 amd64 2.40-2 [153 kB] Get:158 http://deb.debian.org/debian bookworm/main amd64 libctf0 amd64 2.40-2 [89.8 kB] Get:159 http://deb.debian.org/debian bookworm/main amd64 libgprofng0 amd64 2.40-2 [812 kB] Get:160 http://deb.debian.org/debian bookworm/main amd64 libjansson4 amd64 2.14-2 [40.8 kB] Get:161 http://deb.debian.org/debian bookworm/main amd64 binutils-x86-64-linux-gnu amd64 2.40-2 [2246 kB] Get:162 http://deb.debian.org/debian bookworm/main amd64 binutils amd64 2.40-2 [65.0 kB] Get:163 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-14 [116 kB] Get:164 http://deb.debian.org/debian bookworm/main amd64 libitm1 amd64 12.2.0-14 [26.1 kB] Get:165 http://deb.debian.org/debian bookworm/main amd64 libatomic1 amd64 12.2.0-14 [9328 B] Get:166 http://deb.debian.org/debian bookworm/main amd64 libasan8 amd64 12.2.0-14 [2195 kB] Get:167 http://deb.debian.org/debian bookworm/main amd64 liblsan0 amd64 12.2.0-14 [969 kB] Get:168 http://deb.debian.org/debian bookworm/main amd64 libtsan2 amd64 12.2.0-14 [2196 kB] Get:169 http://deb.debian.org/debian bookworm/main amd64 libubsan1 amd64 12.2.0-14 [883 kB] Get:170 http://deb.debian.org/debian bookworm/main amd64 libgcc-12-dev amd64 12.2.0-14 [2437 kB] Get:171 http://deb.debian.org/debian bookworm/main amd64 gcc-12 amd64 12.2.0-14 [19.3 MB] Get:172 http://deb.debian.org/debian bookworm/main amd64 gcc amd64 4:12.2.0-3 [5216 B] Get:173 http://deb.debian.org/debian bookworm/main amd64 libc-dev-bin amd64 2.36-9+deb12u7 [45.8 kB] Get:174 http://deb.debian.org/debian bookworm/main amd64 linux-libc-dev amd64 6.1.94-1 [1994 kB] Get:175 http://deb.debian.org/debian bookworm/main amd64 libcrypt-dev amd64 1:4.4.33-2 [118 kB] Get:176 http://deb.debian.org/debian bookworm/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 kB] Get:177 http://deb.debian.org/debian bookworm/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:178 http://deb.debian.org/debian bookworm/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:179 http://deb.debian.org/debian bookworm/main amd64 libc6-dev amd64 2.36-9+deb12u7 [1899 kB] Get:180 http://deb.debian.org/debian bookworm/main amd64 libstdc++-12-dev amd64 12.2.0-14 [2046 kB] Get:181 http://deb.debian.org/debian bookworm/main amd64 g++-12 amd64 12.2.0-14 [10.7 MB] Get:182 http://deb.debian.org/debian bookworm/main amd64 g++ amd64 4:12.2.0-3 [1356 B] Get:183 http://deb.debian.org/debian bookworm/main amd64 libopenblas0 amd64 0.3.21+ds-4 [32.6 kB] Get:184 http://deb.debian.org/debian bookworm/main amd64 libopenblas-pthread-dev amd64 0.3.21+ds-4 [4971 kB] Get:185 http://deb.debian.org/debian bookworm/main amd64 libopenblas-dev amd64 0.3.21+ds-4 [44.9 kB] Get:186 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-21 [9508 kB] Get:187 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get:188 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6+deb12u2 [1987 kB] Get:189 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get:190 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get:191 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6+deb12u2 [4742 kB] Get:192 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get:193 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get:194 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get:195 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6+deb12u2 [615 kB] Get:196 http://deb.debian.org/debian bookworm/main amd64 python3-alabaster all 0.7.12-1 [20.8 kB] Get:197 http://deb.debian.org/debian bookworm/main amd64 python3-babel all 2.10.3-1 [103 kB] Get:198 http://deb.debian.org/debian bookworm/main amd64 python-babel-localedata all 2.10.3-1 [5615 kB] Get:199 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.7.1-4 [30.1 kB] Get:200 http://deb.debian.org/debian bookworm/main amd64 sgml-base all 1.31 [15.4 kB] Get:201 http://deb.debian.org/debian bookworm/main amd64 python3-sphinx all 5.3.0-4 [549 kB] Get:202 http://deb.debian.org/debian bookworm/main amd64 python3-docutils all 0.19+dfsg-6 [382 kB] Get:203 http://deb.debian.org/debian bookworm/main amd64 docutils-common all 0.19+dfsg-6 [127 kB] Get:204 http://deb.debian.org/debian bookworm/main amd64 python3-roman all 3.3-3 [9880 B] Get:205 http://deb.debian.org/debian bookworm/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get:206 http://deb.debian.org/debian bookworm/main amd64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get:207 http://deb.debian.org/debian bookworm/main amd64 python3-zipp all 1.0.0-6 [6696 B] Get:208 http://deb.debian.org/debian bookworm/main amd64 python3-importlib-metadata all 4.12.0-1 [24.9 kB] Get:209 http://deb.debian.org/debian bookworm/main amd64 python3-jinja2 all 3.1.2-1 [119 kB] Get:210 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get:211 http://deb.debian.org/debian bookworm/main amd64 python3-pygments all 2.14.0+dfsg-1 [783 kB] Get:212 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.13-1~deb12u1 [1418 kB] Get:213 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get:214 http://deb.debian.org/debian bookworm/main amd64 python3-certifi all 2022.9.24-1 [153 kB] Get:215 http://deb.debian.org/debian bookworm/main amd64 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get:216 http://deb.debian.org/debian bookworm/main amd64 python3-idna all 3.3-1+deb12u1 [41.0 kB] Get:217 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:218 http://deb.debian.org/debian bookworm/main amd64 python3-urllib3 all 1.26.12-1 [117 kB] Get:219 http://deb.debian.org/debian bookworm/main amd64 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get:220 http://deb.debian.org/debian bookworm/main amd64 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get:221 http://deb.debian.org/debian bookworm/main amd64 python3-snowballstemmer all 2.2.0-2 [57.8 kB] Get:222 http://deb.debian.org/debian bookworm/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get:223 http://deb.debian.org/debian bookworm/main amd64 sphinx-common all 5.3.0-4 [653 kB] Get:224 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:225 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:226 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get:227 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get:228 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Get:229 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get:230 http://deb.debian.org/debian bookworm/main amd64 python3-gast all 0.5.2-2 [9364 B] Get:231 http://deb.debian.org/debian bookworm/main amd64 python3-beniget all 0.4.1-3 [9920 B] Get:232 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get:233 http://deb.debian.org/debian bookworm/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get:234 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [28.9 kB] Get:235 http://deb.debian.org/debian bookworm/main amd64 python3-pil.imagetk amd64 9.4.0-1.1+deb12u1 [74.2 kB] Get:236 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get:237 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get:238 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get:239 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-2 [189 kB] Get:240 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get:241 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2+deb12u3 [1400 kB] Get:242 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:243 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get:244 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4.1 [10.6 kB] Get:245 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get:246 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get:247 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get:248 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.2+deb12u1 [286 kB] Get:249 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-6+deb12u1 [316 kB] Get:250 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.4-0.2+deb12u1 [99.4 kB] Get:251 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.4-0.2+deb12u1 [109 kB] Get:252 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:253 http://deb.debian.org/debian bookworm/main amd64 fonts-lyx all 2.3.7-1 [186 kB] Get:254 http://deb.debian.org/debian bookworm/main amd64 python-matplotlib-data all 3.6.3-1 [2744 kB] Get:255 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-2 [78.3 kB] Get:256 http://deb.debian.org/debian bookworm/main amd64 python3-pyparsing all 3.0.9-1 [138 kB] Get:257 http://deb.debian.org/debian bookworm/main amd64 python3-contourpy amd64 1.0.7-1+b1 [176 kB] Get:258 http://deb.debian.org/debian bookworm/main amd64 python3-cycler all 0.11.0-1 [8020 B] Get:259 http://deb.debian.org/debian bookworm/main amd64 python3-brotli amd64 1.0.9-2+b6 [281 kB] Get:260 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get:261 http://deb.debian.org/debian bookworm/main amd64 python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB] Get:262 http://deb.debian.org/debian bookworm/main amd64 python3-mpmath all 1.2.1-2 [418 kB] Get:263 http://deb.debian.org/debian bookworm/main amd64 python3-sympy all 1.11.1-1 [4358 kB] Get:264 http://deb.debian.org/debian bookworm/main amd64 python3-appdirs all 1.4.4-3 [13.0 kB] Get:265 http://deb.debian.org/debian bookworm/main amd64 python3-fs all 2.4.16-2 [95.2 kB] Get:266 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:267 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u1 [687 kB] Get:268 http://deb.debian.org/debian bookworm/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get:269 http://deb.debian.org/debian bookworm/main amd64 python3-lxml amd64 4.9.2-1+b1 [1194 kB] Get:270 http://deb.debian.org/debian bookworm/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b2 [25.0 kB] Get:271 http://deb.debian.org/debian bookworm/main amd64 python3-unicodedata2 amd64 14.0.0+ds2-1+b2 [299 kB] Get:272 http://deb.debian.org/debian bookworm/main amd64 unicode-data all 15.0.0-1 [7984 kB] Get:273 http://deb.debian.org/debian bookworm/main amd64 python3-fonttools amd64 4.38.0-1+b1 [1012 kB] Get:274 http://deb.debian.org/debian bookworm/main amd64 libqhull-r8.0 amd64 2020.2-5 [248 kB] Get:275 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get:276 http://deb.debian.org/debian bookworm/main amd64 libpam-runtime all 1.5.2-6+deb12u1 [161 kB] Get:277 http://deb.debian.org/debian bookworm/main amd64 libacl1 amd64 2.3.1-3 [31.5 kB] Get:278 http://deb.debian.org/debian bookworm/main amd64 libattr1 amd64 1:2.5.1-4 [22.2 kB] Get:279 http://deb.debian.org/debian bookworm/main amd64 libmd0 amd64 1.0.4-2 [29.5 kB] Get:280 http://deb.debian.org/debian bookworm/main amd64 libpcre3 amd64 2:8.39-15 [341 kB] Get:281 http://deb.debian.org/debian bookworm/main amd64 mawk amd64 1.3.4.20200120-3.1 [119 kB] Get:282 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get:283 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:284 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get:285 http://deb.debian.org/debian bookworm/main amd64 libparasail8 amd64 2.6+dfsg-1 [1878 kB] Get:286 http://deb.debian.org/debian bookworm/main amd64 libparasail-dev amd64 2.6+dfsg-1 [1495 kB] Get:287 http://deb.debian.org/debian bookworm/main amd64 libss2 amd64 1.47.0-2 [24.5 kB] Get:288 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:289 http://deb.debian.org/debian bookworm/main amd64 mailcap all 3.70+nmu1 [32.0 kB] Get:290 http://deb.debian.org/debian bookworm/main amd64 python3-renderpm amd64 3.6.12-1+b1 [79.2 kB] Get:291 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab-accel amd64 3.6.12-1+b1 [38.6 kB] Get:292 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab all 3.6.12-1 [564 kB] Get:293 http://deb.debian.org/debian bookworm/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:294 http://deb.debian.org/debian bookworm/main amd64 python3-biopython amd64 1.80+dfsg-4+b1 [1593 kB] Get:295 http://deb.debian.org/debian bookworm/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get:296 http://deb.debian.org/debian bookworm/main amd64 python3-pandas all 1.5.3+dfsg-2 [2885 kB] Get:297 http://deb.debian.org/debian bookworm/main amd64 python3-wheel all 0.38.4-2 [30.8 kB] Get:298 http://deb.debian.org/debian bookworm/main amd64 python3-parasail all 1.3.3-1 [38.6 kB] Get:299 http://deb.debian.org/debian bookworm/main amd64 python3-py all 1.11.0-1 [89.2 kB] Get:300 http://deb.debian.org/debian bookworm/main amd64 python3-pytest all 7.2.1-2 [236 kB] Get:301 http://deb.debian.org/debian bookworm/main amd64 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get:302 http://deb.debian.org/debian bookworm/main amd64 python3-tqdm all 4.64.1-1 [97.7 kB] Get:303 http://deb.debian.org/debian bookworm/main amd64 python3-pychopper all 2.7.2-1 [136 kB] Get:304 http://deb.debian.org/debian bookworm/main amd64 python3-seaborn all 0.12.2-1 [215 kB] Get:305 http://deb.debian.org/debian bookworm/main amd64 python3-sphinx-rtd-theme all 1.2.0+dfsg-1 [27.7 kB] Get:306 http://deb.debian.org/debian bookworm/main amd64 sphinx-rtd-theme-common all 1.2.0+dfsg-1 [997 kB] Get:307 http://deb.debian.org/debian bookworm/main amd64 python3-toml all 0.10.2-1 [16.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 253 MB in 11s (23.3 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20143 files and directories currently installed.) Preparing to unpack .../libpam0g_1.5.2-6+deb12u1_amd64.deb ... Unpacking libpam0g:amd64 (1.5.2-6+deb12u1) over (1.4.0-9+deb11u1) ... Setting up libpam0g:amd64 (1.5.2-6+deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20143 files and directories currently installed.) Preparing to unpack .../libcrypt1_1%3a4.4.33-2_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.33-2) over (1:4.4.18-4) ... Setting up libcrypt1:amd64 (1:4.4.33-2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20146 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.66-4_amd64.deb ... Unpacking libcap2:amd64 (1:2.66-4) ... Setting up libcap2:amd64 (1:2.66-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20154 files and directories currently installed.) Preparing to unpack .../libsystemd0_252.26-1~deb12u2_amd64.deb ... Unpacking libsystemd0:amd64 (252.26-1~deb12u2) over (247.3-7+deb11u5) ... Setting up libsystemd0:amd64 (252.26-1~deb12u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20155 files and directories currently installed.) Preparing to unpack .../libudev1_252.26-1~deb12u2_amd64.deb ... Unpacking libudev1:amd64 (252.26-1~deb12u2) over (247.3-7+deb11u5) ... Setting up libudev1:amd64 (252.26-1~deb12u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20156 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.1-1_amd64.deb ... Unpacking libxxhash0:amd64 (0.8.1-1) over (0.8.0-2) ... Setting up libxxhash0:amd64 (0.8.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20156 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.6.1_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.6.1) over (2.2.4) ... Setting up libapt-pkg6.0:amd64 (2.6.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20156 files and directories currently installed.) Preparing to unpack .../libnettle8_3.8.1-2_amd64.deb ... Unpacking libnettle8:amd64 (3.8.1-2) over (3.7.3-1) ... Setting up libnettle8:amd64 (3.8.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20156 files and directories currently installed.) Preparing to unpack .../libhogweed6_3.8.1-2_amd64.deb ... Unpacking libhogweed6:amd64 (3.8.1-2) over (3.7.3-1) ... Setting up libhogweed6:amd64 (3.8.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20156 files and directories currently installed.) Preparing to unpack .../libunistring2_1.0-2_amd64.deb ... Unpacking libunistring2:amd64 (1.0-2) over (0.9.10-4) ... Setting up libunistring2:amd64 (1.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20156 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.3-1+b1_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.3-1+b1) over (2.3.0-5) ... Setting up libidn2-0:amd64 (2.3.3-1+b1) ... Selecting previously unselected package libffi8:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20158 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.4-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.4-1) ... Setting up libffi8:amd64 (3.4.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20163 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.24.1-2_amd64.deb ... Unpacking libp11-kit0:amd64 (0.24.1-2) over (0.23.22-1) ... Setting up libp11-kit0:amd64 (0.24.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20163 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.19.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.19.0-2) over (4.16.0-2+deb11u1) ... Setting up libtasn1-6:amd64 (4.19.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20163 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.9-2+deb12u3_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.9-2+deb12u3) over (3.7.1-5+deb11u5) ... Setting up libgnutls30:amd64 (3.7.9-2+deb12u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20165 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.4-1_all.deb ... Unpacking libsemanage-common (3.4-1) over (3.1-1) ... Setting up libsemanage-common (3.4-1) ... Installing new version of config file /etc/selinux/semanage.conf ... Selecting previously unselected package libsepol2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20165 files and directories currently installed.) Preparing to unpack .../libsepol2_3.4-2.1_amd64.deb ... Unpacking libsepol2:amd64 (3.4-2.1) ... Setting up libsepol2:amd64 (3.4-2.1) ... Selecting previously unselected package libsemanage2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20169 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.4-1+b5_amd64.deb ... Unpacking libsemanage2:amd64 (3.4-1+b5) ... Setting up libsemanage2:amd64 (3.4-1+b5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20174 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.13+dfsg1-1+b1_amd64.deb ... Unpacking passwd (1:4.13+dfsg1-1+b1) over (1:4.8.1-1) ... Setting up passwd (1:4.13+dfsg1-1+b1) ... Installing new version of config file /etc/default/useradd ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20209 files and directories currently installed.) Removing libsemanage1:amd64 (3.1-1+b2) ... (Reading database ... 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Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-automatic.gpg ... (Reading database ... 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No schema files found: doing nothing. Setting up fontconfig-config (2.14.1-4) ... Installing new version of config file /etc/fonts/conf.d/README ... Installing new version of config file /etc/fonts/fonts.conf ... Setting up libtirpc-common (1.3.3+ds-1) ... Setting up fonts-lyx (2.3.7-1) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libsqlite3-0:amd64 (3.40.1-2) ... Setting up binutils-common:amd64 (2.40-2) ... Setting up x11-common (1:7.7+23) ... Installing new version of config file /etc/X11/Xsession ... Installing new version of config file /etc/X11/Xsession.d/20x11-common_process-args ... Installing new version of config file /etc/X11/Xsession.d/90x11-common_ssh-agent ... Installing new version of config file /etc/init.d/x11-common ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libdeflate0:amd64 (1.14-1) ... Setting up linux-libc-dev:amd64 (6.1.94-1) ... Setting up libctf-nobfd0:amd64 (2.40-2) ... Setting up libqhull-r8.0:amd64 (2020.2-5) ... Setting up libcom-err2:amd64 (1.47.0-2) ... Setting up libparasail-dev:amd64 (2.6+dfsg-1) ... Setting up libgomp1:amd64 (12.2.0-14) ... Setting up libjbig0:amd64 (2.1-6.1) ... Setting up python-babel-localedata (2.10.3-1) ... Setting up libjansson4:amd64 (2.14-2) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Setting up tzdata (2024a-0+deb12u1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Jul 31 22:57:09 UTC 2024. Universal Time is now: Wed Jul 31 22:57:09 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.0.0-1) ... Setting up libxsimd-dev:amd64 (8.1.0-7) ... Setting up libfontenc1:amd64 (1:1.1.4-1) ... Setting up libblas3:amd64 (3.11.0-2) ... Setting up rpcsvc-proto (1.4.3-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-2) ... Setting up libx11-data (2:1.8.4-2+deb12u2) ... Setting up libmpfr6:amd64 (4.2.0-1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libquadmath0:amd64 (12.2.0-14) ... Setting up libimagequant0:amd64 (2.17.0-1) ... Setting up libpng16-16:amd64 (1.6.39-2) ... Setting up libmpc3:amd64 (1.3.1-1) ... Setting up libatomic1:amd64 (12.2.0-14) ... Setting up libss2:amd64 (1.47.0-2) ... Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up util-linux (2.38.1-5+deb12u1) ... Setting up libncursesw6:amd64 (6.4-4) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Setting up logsave (1.47.0-2) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up libwebp7:amd64 (1.2.4-0.2+deb12u1) ... Setting up libubsan1:amd64 (12.2.0-14) ... Setting up mount (2.38.1-5+deb12u1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.33-2) ... Setting up libtiff6:amd64 (4.5.0-6+deb12u1) ... Setting up libasan8:amd64 (12.2.0-14) ... Setting up libjson-perl (4.10000-1) ... Setting up libopenjp2-7:amd64 (2.5.0-2) ... Setting up libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Setting up sgml-base (1.31) ... Setting up mawk (1.3.4.20200120-3.1) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Setting up libtsan2:amd64 (12.2.0-14) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libbinutils:amd64 (2.40-2) ... Setting up libisl23:amd64 (0.25-1.1) ... Setting up libc-dev-bin (2.36-9+deb12u7) ... Setting up python-matplotlib-data (3.6.3-1) ... Installing new version of config file /etc/matplotlibrc ... Setting up openssl (3.0.13-1~deb12u1) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libwebpmux3:amd64 (1.2.4-0.2+deb12u1) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up mailcap (3.70+nmu1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Setting up sphinx-rtd-theme-common (1.2.0+dfsg-1) ... Setting up libcc1-0:amd64 (12.2.0-14) ... Setting up liblsan0:amd64 (12.2.0-14) ... Setting up libitm1:amd64 (12.2.0-14) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libctf0:amd64 (2.40-2) ... Setting up liblapack3:amd64 (3.11.0-2) ... Setting up cpp-12 (12.2.0-14) ... Setting up libopenblas0-pthread:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up libwebpdemux2:amd64 (1.2.4-0.2+deb12u1) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up e2fsprogs (1.47.0-2) ... Installing new version of config file /etc/mke2fs.conf ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 26 added, 15 removed; done. Setting up libgprofng0:amd64 (2.40-2) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-5+deb12u3) ... Setting up libgcc-12-dev:amd64 (12.2.0-14) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Setting up ucf (3.0043+nmu1) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up libopenblas0:amd64 (0.3.21+ds-4) ... Setting up cpp (4:12.2.0-3) ... Setting up docutils-common (0.19+dfsg-6) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Setting up libfontconfig1:amd64 (2.14.1-4) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Setting up binutils-x86-64-linux-gnu (2.40-2) ... Setting up libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libxft2:amd64 (2.3.6-1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6+deb12u2) ... Setting up libtk8.6:amd64 (8.6.13-2) ... Setting up binutils (2.40-2) ... Setting up xfonts-utils (1:7.7+6) ... Setting up libopenblas-dev:amd64 (0.3.21+ds-4) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up gcc-12 (12.2.0-14) ... Setting up libraqm0:amd64 (0.7.0-4.1) ... Setting up sphinx-common (5.3.0-4) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.36-9+deb12u7) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6+deb12u2) ... Setting up libpython3.11:amd64 (3.11.2-6+deb12u2) ... Setting up libstdc++-12-dev:amd64 (12.2.0-14) ... Setting up python3 (3.11.2-1+b1) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up python3-markupsafe (2.1.2-1+b1) ... Setting up python3-tz (2022.7.1-4) ... Setting up gcc (4:12.2.0-3) ... Setting up python3-six (1.16.0-4) ... Setting up python3-pil:amd64 (9.4.0-1.1+deb12u1) ... Setting up python3-roman (3.3-3) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-jinja2 (3.1.2-1) ... Setting up python3-packaging (23.0-1) ... Setting up libexpat1-dev:amd64 (2.5.0-1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-snowballstemmer (2.2.0-2) ... Setting up python3-brotli (1.0.9-2+b6) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-reportlab-accel:amd64 (3.6.12-1+b1) ... Setting up python3-kiwisolver (1.4.4-1+b1) ... Setting up python3-idna (3.3-1+deb12u1) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-urllib3 (1.26.12-1) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-reportlab (3.6.12-1) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up python3-lxml:amd64 (4.9.2-1+b1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-appdirs (1.4.4-3) ... Setting up python3-edlib:amd64 (1.2.7-4+b1) ... Setting up python3-imagesize (1.4.1-1) ... Setting up g++-12 (12.2.0-14) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.11.1-1) ... Setting up python3-attr (22.2.0-1) ... Setting up libboost1.74-dev:amd64 (1.74.0+ds1-21) ... Setting up python3-renderpm:amd64 (3.6.12-1+b1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-babel (2.10.3-1) ... Setting up python3-lz4 (4.0.2+dfsg-1+b2) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-alabaster (0.7.12-1) ... Setting up python3-unicodedata2 (14.0.0+ds2-1+b2) ... Setting up python3-ply (3.11-5) ... Setting up python3-tqdm (4.64.1-1) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-tk:amd64 (3.11.2-3) ... Setting up python3-zipp (1.0.0-6) ... Setting up python3-wheel (0.38.4-2) ... Setting up python3-fs (2.4.16-2) ... Setting up python3-beniget (0.4.1-3) ... Setting up python3-pygments (2.14.0+dfsg-1) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up python3-pil.imagetk:amd64 (9.4.0-1.1+deb12u1) ... Setting up libpython3.11-dev:amd64 (3.11.2-6+deb12u2) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up g++ (4:12.2.0-3) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up python3-contourpy (1.0.7-1+b1) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up python3-biopython (1.80+dfsg-4+b1) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up python3-importlib-metadata (4.12.0-1) ... Setting up python3.11-dev (3.11.2-6+deb12u2) ... Setting up python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Setting up python3-parasail (1.3.3-1) ... Setting up python3-pandas (1.5.3+dfsg-2) ... Setting up libpython3-all-dev:amd64 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-scipy (1.10.1-2) ... Setting up python3-fonttools (4.38.0-1+b1) ... Setting up python3-ufolib2 (0.14.0+dfsg1-1) ... Setting up python3-matplotlib (3.6.3-1+b1) ... Setting up python3-seaborn (0.12.2-1) ... Setting up python3-pychopper (2.7.2-1) ... Processing triggers for debianutils (5.7-0.5~deb12u1) ... Processing triggers for libc-bin (2.36-9+deb12u7) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.19+dfsg-6) ... Setting up python3-sphinx (5.3.0-4) ... Setting up python3-sphinx-rtd-theme (1.2.0+dfsg-1) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 3m37.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-get', '-yf', 'dist-upgrade'] 3m37.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 3m38.7s DUMP: 913e17be84ed63a3110ce3137c1d003a - 3m38.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 3m38.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-cache', 'show', '--no-all-versions', 'python3-pychopper'] 3m39.0s DUMP: Package: python3-pychopper Source: pychopper Version: 2.7.2-1 Installed-Size: 407 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-biopython, python3-matplotlib, python3-numpy, python3-pandas, python3-parasail, python3-pytest, python3-six, python3-tqdm, python3:any Description-en: identify, orient and trim full-length Nanopore cDNA reads Pychopper v2 is a Python module to identify, orient and trim full-length Nanopore cDNA reads. It is also able to rescue fused reads and provides the script 'cdna_classifier.py'. The general approach of Pychopper v2 is the following: . * Pychopper first identifies alignment hits of the primers across the length of the sequence. The default method for doing this is using nhmmscan with the pre-trained strand specific profile HMMs, included with the package. Alternatively, one can use the edlib backend, which uses a combination of global and local alignment to identify the primers within the read. * After identifying the primer hits by either of the backends, the reads are divided into segments defined by two consecutive primer hits. The score of a segment is its length if the configuration of the flanking primer hits is valid (such as SPP,-VNP for forward reads) or zero otherwise. * The segments are assigned to rescued reads using a dynamic programming algorithm maximizing the sum of used segment scores (hence the amount of rescued bases). A crucial observation about the algorithm is that if a segment is included as a rescued read, then the next segment must be excluded as one of the primer hits defining it was "used up" by the previous segment. This put constraints on the dynamic programming graph. The arrows in read define the optimal path for rescuing two fused reads with the a total score of l1 + l3. . A crucial parameter of Pychopper v2 is -q, which determines the stringency of primer alignment (E-value in the case of the pHMM backend). This can be explicitly specified by the user, however by default it is optimized on a random sample of input reads to produce the maximum number of classified reads. Description-md5: c82f4d6ea954d4a2adb49d0cbebcb404 Homepage: https://github.com/epi2me-labs/pychopper Section: python Priority: optional Filename: pool/main/p/pychopper/python3-pychopper_2.7.2-1_all.deb Size: 136472 MD5sum: a2872c13535cb005fc89782c27007558 SHA256: ed6c2d1838529fd4af9a863753b50575ee0ea8a70c20fc3c7a1315a3ecad49b0 3m39.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-cache', 'show', '--no-all-versions', 'python3-pychopper'] 3m39.0s INFO: apt-cache knows about the following packages: python3-pychopper 3m39.0s INFO: Running scripts pre_install 3m39.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_database-server'] 3m39.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_database-server'] 3m39.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_exceptions'] 3m39.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_exceptions'] 3m39.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_extras'] 3m39.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_extras'] 3m39.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_foreign_architecture'] 3m39.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_foreign_architecture'] 3m39.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m39.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m39.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-cache', 'policy'] 3m39.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.6,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 3m39.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-cache', 'policy'] 3m39.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-cache', 'policy', 'python3-pychopper'] 3m39.1s DUMP: python3-pychopper: Installed: 2.7.2-1 Candidate: 2.7.2-1 Version table: *** 2.7.2-1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 100 /var/lib/dpkg/status 3m39.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-cache', 'policy', 'python3-pychopper'] 3m39.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-get', '-y', 'install', 'python3-pychopper'] 3m39.7s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-pychopper is already the newest version (2.7.2-1). The following packages were automatically installed and are no longer required: docutils-common fonts-font-awesome fonts-lato libjson-perl libmpdec3 libparasail3 libperl5.32 libpython3.9-minimal libpython3.9-stdlib libtiff5 libwebp6 perl-modules-5.32 python3-alabaster python3-certifi python3-chardet python3-charset-normalizer python3-docutils python3-edlib python3-idna python3-imagesize python3-requests python3-roman python3-seaborn python3-snowballstemmer python3-sphinx python3-sphinx-rtd-theme python3-toml python3-urllib3 python3.9 python3.9-minimal sphinx-common sphinx-rtd-theme-common ucf Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3m39.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-get', '-y', 'install', 'python3-pychopper'] 3m39.7s INFO: Running scripts post_install 3m39.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_install_exceptions'] 3m39.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_install_exceptions'] 3m39.7s INFO: Running scripts post_distupgrade 3m39.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_distupgrade_base_cleanup'] 3m39.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_distupgrade_base_cleanup'] 3m39.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_distupgrade_exceptions'] 3m39.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_distupgrade_exceptions'] 3m39.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 3m39.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 3m39.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_distupgrade_squeeze-backports'] 3m39.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_distupgrade_squeeze-backports'] 3m39.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_distupgrade_zz_backports'] 3m39.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_distupgrade_zz_backports'] 3m39.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2ehoday'] 3m41.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2ehoday'] 3m41.7s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmph2ehoday to sid 3m41.7s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 3m41.7s INFO: Running scripts pre_distupgrade 3m41.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 3m41.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 3m41.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_distupgrade_exceptions'] 3m41.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_distupgrade_exceptions'] 3m41.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 3m41.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 3m41.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_distupgrade_zz_database-server'] 3m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_distupgrade_zz_database-server'] 3m41.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 3m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 3m41.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-get', 'update'] 3m46.4s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9899 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7244 kB] Fetched 17.3 MB in 4s (4792 kB/s) Reading package lists... 3m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-get', 'update'] 3m46.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-get', '-yf', 'dist-upgrade'] 5m52.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: docutils-common fonts-font-awesome fonts-lato gcc-13-base libboost-dev libboost1.83-dev libgcc-13-dev libjson-perl libmpdec3 libnsl-dev libopenblas-dev libopenblas-pthread-dev libopenblas0 libparasail3 libperl5.32 libperl5.36 libpython3-all-dev libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.11t64 libpython3.9-minimal libpython3.9-stdlib libstdc++-13-dev libtiff5 libtirpc-dev libwebp6 libxsimd-dev perl-modules-5.32 perl-modules-5.36 python3-alabaster python3-all-dev python3-beniget python3-certifi python3-charset-normalizer python3-defusedxml python3-docutils python3-edlib python3-gast python3-idna python3-imagesize python3-lib2to3 python3-more-itertools python3-ply python3-py python3-pythran python3-requests python3-roman python3-seaborn python3-snowballstemmer python3-sphinx python3-sphinx-rtd-theme python3-sphinxcontrib.jquery python3-toml python3-urllib3 python3.11 python3.11-dev python3.11-minimal python3.9 python3.9-minimal sphinx-common sphinx-rtd-theme-common ucf xtl-dev Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0 libboost1.74-dev libdb5.3 libext2fs2 libgdbm-compat4 libgdbm6 libglib2.0-0 libgnutls30 libhogweed6 libnettle8 libpng16-16 libpython3.11 libreadline8 libssl3 libtirpc3 python3-distutils python3-renderpm python3-reportlab-accel The following NEW packages will be installed: cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu fonts-dejavu-mono g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-13-base gcc-14 gcc-14-base gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu libapt-pkg6.0t64 libboost1.83-dev libcairo2 libcurl3t64-gnutls libdb5.3t64 libext2fs2t64 libgcc-13-dev libgcc-14-dev libgdbm-compat4t64 libgdbm6t64 libglib2.0-0t64 libgnutls30t64 libhogweed6t64 libhts3t64 libhtscodecs2 libhwasan0 libldap-2.5-0 libnettle8t64 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libperl5.38t64 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3.11t64 libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsframe1 libsharpyuv0 libssh2-1t64 libssl3t64 libstdc++-13-dev libstdc++-14-dev libtirpc3t64 libunistring5 libxcb-render0 libxcb-shm0 netbase perl-modules-5.38 python3-cairo python3-defusedxml python3-freetype python3-pysam python3-rlpycairo python3-setuptools python3-sphinxcontrib.jquery python3.12 python3.12-dev python3.12-minimal xtl-dev The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu blt bsdutils ca-certificates coreutils cpp cpp-12 dash debconf debian-archive-keyring debianutils diffutils docutils-common dpkg e2fsprogs findutils fontconfig-config fonts-dejavu-core fonts-lato fonts-lyx fonts-urw-base35 g++ g++-12 gcc gcc-12 gcc-12-base gpgv grep gzip hostname init-system-helpers libacl1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblas3 libblkid1 libboost-dev libbrotli1 libbsd0 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libdebconfclient0 libdeflate0 libexpat1 libexpat1-dev libffi8 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-12-dev libgcc-s1 libgcrypt20 libgfortran5 libgmp10 libgomp1 libgpg-error0 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libicu72 libidn2-0 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-sphinxdoc libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblsan0 liblz4-1 liblzma5 libmd0 libmount1 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libparasail-dev libparasail8 libpcre2-8-0 libpcre3 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libquadmath0 libraqm0 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libstdc++-12-dev libstdc++6 libsystemd0 libtasn1-6 libtcl8.6 libtiff6 libtinfo6 libtirpc-common libtirpc-dev libtk8.6 libtsan2 libubsan1 libudev1 libuuid1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 libxxhash0 libzstd1 linux-libc-dev login logsave mailcap mawk media-types mount ncurses-base ncurses-bin openssl passwd perl perl-base python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-all python3-all-dev python3-appdirs python3-attr python3-babel python3-biopython python3-brotli python3-certifi python3-chardet python3-charset-normalizer python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-docutils python3-edlib python3-fonttools python3-fs python3-idna python3-importlib-metadata python3-jinja2 python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-mpmath python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pkg-resources python3-pluggy python3-ply python3-py python3-pychopper python3-pygments python3-pyparsing python3-pytest python3-pythran python3-reportlab python3-requests python3-scipy python3-seaborn python3-six python3-snowballstemmer python3-sphinx python3-sphinx-rtd-theme python3-sympy python3-tk python3-tqdm python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-wheel python3-zipp python3.11 python3.11-dev python3.11-minimal readline-common sed sensible-utils sphinx-common sphinx-rtd-theme-common sysvinit-utils tar tk8.6-blt2.5 tzdata unicode-data usrmerge util-linux util-linux-extra x11-common xml-core zlib1g zlib1g-dev 271 upgraded, 70 newly installed, 18 to remove and 0 not upgraded. Need to get 338 MB of archives. After this operation, 439 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 base-files amd64 13.3 [72.3 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libnsl-dev amd64 1.3.0-3+b2 [67.2 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.36-4 [119 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.39-6 [1924 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.39-6 [51.5 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [189 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.6+dfsg-1 [303 kB] Get:9 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.2.2-1 [1364 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:16 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.39-6 [2781 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.39-6 [610 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.2.2-1 [2246 kB] Get:19 http://deb.debian.org/debian sid/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] Get:20 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1 [87.9 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libexpat1-dev amd64 2.6.2-1 [155 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:23 http://deb.debian.org/debian sid/main amd64 python3.11-dev amd64 3.11.9-1 [501 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libpython3.11-dev amd64 3.11.9-1 [4513 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libpython3.11t64 amd64 3.11.9-1 [1960 kB] Get:26 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:27 http://deb.debian.org/debian sid/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get:28 http://deb.debian.org/debian sid/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get:31 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.66-5 [27.4 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 256.4-2 [380 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:3.1.2-4 [11.5 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.8.5-1+b1 [17.4 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:3.1.2-4+b1 [49.0 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.36-4 [89.8 kB] Get:38 http://deb.debian.org/debian sid/main amd64 perl-modules-5.38 all 5.38.2-5 [2905 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-7 [697 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.23-6 [72.8 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.23-6 [48.7 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libperl5.38t64 amd64 5.38.2-5 [4275 kB] Get:43 http://deb.debian.org/debian sid/main amd64 perl amd64 5.38.2-5 [236 kB] Get:44 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.38.2-5 [1643 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libbz2-1.0 amd64 1.0.8-5.1 [38.0 kB] Get:46 http://deb.debian.org/debian sid/main amd64 debconf all 1.5.87 [119 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.5.3-7 [67.7 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.42-4+b1 [262 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.5-2+b3 [74.9 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.5.3-7 [54.4 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.5.3-7 [265 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get:53 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-4 [69.3 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5-2 [135 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.5-2 [344 kB] Get:56 http://deb.debian.org/debian sid/main amd64 tzdata all 2024a-4 [255 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get:58 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.6.2-2 [254 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.0-1 [902 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-3+b2 [40.3 kB] Get:62 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 6.9.12-1 [2355 kB] Get:63 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.1.0-5 [45.6 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14.1.0-5 [72.8 kB] Get:65 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.20 [89.5 kB] Get:66 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2.21-2.1 [1492 kB] Get:67 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.40.2-1 [104 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2+b1 [559 kB] Get:69 http://deb.debian.org/debian sid/main amd64 usrmerge all 39 [13.1 kB] Get:70 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.4-3.1 [2950 kB] Get:71 http://deb.debian.org/debian sid/main amd64 dash amd64 0.5.12-9 [93.2 kB] Get:72 http://deb.debian.org/debian sid/main amd64 diffutils amd64 1:3.10-1 [375 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.49-2 [79.9 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.11.0-5 [842 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14.1.0-5 [715 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libnettle8t64 amd64 3.10-1 [303 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libhogweed6t64 amd64 3.10-1 [334 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.5-2 [424 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.2-1 [425 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.6-2 [1444 kB] Get:81 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.7-2 [128 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.19.0-3+b2 [48.9 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.2-2+b1 [26.6 kB] Get:84 http://deb.debian.org/debian sid/main amd64 liblz4-1 amd64 1.9.4-3 [59.4 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 256.4-2 [144 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0t64 amd64 2.9.7 [1044 kB] Get:87 http://deb.debian.org/debian sid/main amd64 apt amd64 2.9.7 [1410 kB] Get:88 http://deb.debian.org/debian sid/main amd64 tar amd64 1.35+dfsg-3 [813 kB] Get:89 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.22.10 [1527 kB] Get:90 http://deb.debian.org/debian sid/main amd64 findutils amd64 4.10.0-2 [699 kB] Get:91 http://deb.debian.org/debian sid/main amd64 grep amd64 3.11-4 [431 kB] Get:92 http://deb.debian.org/debian sid/main amd64 gzip amd64 1.12-1.1 [133 kB] Get:93 http://deb.debian.org/debian sid/main amd64 hostname amd64 3.23+nmu2 [10.6 kB] Get:94 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.5-2 [433 kB] Get:95 http://deb.debian.org/debian sid/main amd64 sed amd64 4.9-2 [329 kB] Get:96 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.40.2-1 [166 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.40.2-1 [198 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.40.2-1 [138 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.40.2-1 [34.9 kB] Get:100 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.40.2-1 [1214 kB] Get:101 http://deb.debian.org/debian sid/main amd64 util-linux-extra amd64 2.40.2-1 [263 kB] Get:102 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.272 [10.0 kB] Get:103 http://deb.debian.org/debian sid/main amd64 base-passwd amd64 3.6.4 [50.9 kB] Get:104 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2.2.43-8 [216 kB] Get:116 http://deb.debian.org/debian sid/main amd64 debian-archive-keyring all 2023.4 [161 kB] Get:117 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.5.5-1+b1 [47.3 kB] Get:118 http://deb.debian.org/debian sid/main amd64 init-system-helpers all 1.66 [39.0 kB] Get:119 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.5-2 [270 kB] Get:120 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.09-2 [32.5 kB] Get:121 http://deb.debian.org/debian sid/main amd64 gcc-13-base amd64 13.3.0-4 [46.7 kB] Get:122 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.1.0-5 [137 kB] Get:123 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 14.1.0-5 [25.9 kB] Get:124 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14.1.0-5 [9292 B] Get:125 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 14.1.0-5 [2727 kB] Get:126 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 14.1.0-5 [1205 kB] Get:127 http://deb.debian.org/debian sid/main amd64 libisl23 amd64 0.26-3+b2 [652 kB] Get:128 http://deb.debian.org/debian sid/main amd64 libmpfr6 amd64 4.2.1-1+b1 [714 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libmpc3 amd64 1.3.1-1+b2 [52.1 kB] Get:130 http://deb.debian.org/debian sid/main amd64 g++-12 amd64 12.4.0-2 [10.8 MB] Get:131 http://deb.debian.org/debian sid/main amd64 gcc-12 amd64 12.4.0-2 [19.6 MB] Get:132 http://deb.debian.org/debian sid/main amd64 cpp-12 amd64 12.4.0-2 [9862 kB] Get:133 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 14.1.0-5 [1075 kB] Get:134 http://deb.debian.org/debian sid/main amd64 libstdc++-12-dev amd64 12.4.0-2 [2081 kB] Get:135 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 14.1.0-5 [145 kB] Get:136 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.1.0-5 [836 kB] Get:137 http://deb.debian.org/debian sid/main amd64 libcc1-0 amd64 14.1.0-5 [42.8 kB] Get:138 http://deb.debian.org/debian sid/main amd64 libgcc-12-dev amd64 12.4.0-2 [2431 kB] Get:139 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 14.1.0-5 [2461 kB] Get:140 http://deb.debian.org/debian sid/main amd64 gcc-12-base amd64 12.4.0-2 [42.9 kB] Get:141 http://deb.debian.org/debian sid/main amd64 libgprofng0 amd64 2.42.90.20240720-2 [787 kB] Get:142 http://deb.debian.org/debian sid/main amd64 libctf0 amd64 2.42.90.20240720-2 [88.6 kB] Get:143 http://deb.debian.org/debian sid/main amd64 libctf-nobfd0 amd64 2.42.90.20240720-2 [154 kB] Get:144 http://deb.debian.org/debian sid/main amd64 binutils-x86-64-linux-gnu amd64 2.42.90.20240720-2 [2237 kB] Get:145 http://deb.debian.org/debian sid/main amd64 libbinutils amd64 2.42.90.20240720-2 [523 kB] Get:146 http://deb.debian.org/debian sid/main amd64 binutils amd64 2.42.90.20240720-2 [81.3 kB] Get:147 http://deb.debian.org/debian sid/main amd64 binutils-common amd64 2.42.90.20240720-2 [2598 kB] Get:148 http://deb.debian.org/debian sid/main amd64 libjansson4 amd64 2.14-2+b2 [39.9 kB] Get:149 http://deb.debian.org/debian sid/main amd64 libsframe1 amd64 2.42.90.20240720-2 [76.4 kB] Get:150 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 14.1.0-5 [1489 kB] Get:151 http://deb.debian.org/debian sid/main amd64 libgcc-13-dev amd64 13.3.0-4 [2538 kB] Get:152 http://deb.debian.org/debian sid/main amd64 libstdc++-13-dev amd64 13.3.0-4 [2290 kB] Get:153 http://deb.debian.org/debian sid/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get:154 http://deb.debian.org/debian sid/main amd64 libboost1.83-dev amd64 1.83.0-3+b2 [10.6 MB] Get:155 http://deb.debian.org/debian sid/main amd64 logsave amd64 1.47.1-1 [22.7 kB] Get:156 http://deb.debian.org/debian sid/main amd64 libext2fs2t64 amd64 1.47.1-1 [210 kB] Get:157 http://deb.debian.org/debian sid/main amd64 e2fsprogs amd64 1.47.1-1 [583 kB] Get:158 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get:159 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.80.4-1 [1486 kB] Get:160 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get:161 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get:162 http://deb.debian.org/debian sid/main amd64 libpython3.12-minimal amd64 3.12.4-3 [812 kB] Get:163 http://deb.debian.org/debian sid/main amd64 python3.12-minimal amd64 3.12.4-3 [2137 kB] Get:164 http://deb.debian.org/debian sid/main amd64 python3-all-dev amd64 3.12.4-1 [1068 B] Get:165 http://deb.debian.org/debian sid/main amd64 python3-all amd64 3.12.4-1 [1044 B] Get:166 http://deb.debian.org/debian sid/main amd64 python3-wheel all 0.43.0-1 [52.5 kB] Get:167 http://deb.debian.org/debian sid/main amd64 python3-sphinx-rtd-theme all 2.0.0+dfsg-2 [28.5 kB] Get:168 http://deb.debian.org/debian sid/main amd64 python3-sphinx all 7.3.7-4 [569 kB] Get:169 http://deb.debian.org/debian sid/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get:170 http://deb.debian.org/debian sid/main amd64 libpython3-all-dev amd64 3.12.4-1 [1068 B] Get:171 http://deb.debian.org/debian sid/main amd64 libpython3-dev amd64 3.12.4-1 [9736 B] Get:172 http://deb.debian.org/debian sid/main amd64 python3-dev amd64 3.12.4-1 [26.2 kB] Get:173 http://deb.debian.org/debian sid/main amd64 python3-unicodedata2 amd64 15.1.0+ds-1+b2 [298 kB] Get:174 http://deb.debian.org/debian sid/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get:175 http://deb.debian.org/debian sid/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get:176 http://deb.debian.org/debian sid/main amd64 python3-tk amd64 3.12.4-2 [109 kB] Get:177 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.13.1-2 [16.7 MB] Get:178 http://deb.debian.org/debian sid/main amd64 python3-biopython amd64 1.83+dfsg1-3+b1 [1606 kB] Get:179 http://deb.debian.org/debian sid/main amd64 python3-reportlab all 4.2.2-1 [1150 kB] Get:180 http://deb.debian.org/debian sid/main amd64 python3-pil.imagetk amd64 10.4.0-1 [79.4 kB] Get:181 http://deb.debian.org/debian sid/main amd64 python3-pil amd64 10.4.0-1 [502 kB] Get:182 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 2.2.2+dfsg-4+b1 [4115 kB] Get:183 http://deb.debian.org/debian sid/main amd64 python3-seaborn all 0.13.2-4 [215 kB] Get:184 http://deb.debian.org/debian sid/main amd64 python3-pandas all 2.2.2+dfsg-4 [3095 kB] Get:185 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.26.4+ds-11 [4236 kB] Get:186 http://deb.debian.org/debian sid/main amd64 python3-matplotlib amd64 3.8.3-3 [5560 kB] Get:187 http://deb.debian.org/debian sid/main amd64 python3-markupsafe amd64 2.1.5-1+b1 [13.6 kB] Get:188 http://deb.debian.org/debian sid/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b4 [25.2 kB] Get:189 http://deb.debian.org/debian sid/main amd64 python3-lxml amd64 5.2.2-1 [1208 kB] Get:190 http://deb.debian.org/debian sid/main amd64 python3-kiwisolver amd64 1.4.5-1+b1 [59.5 kB] Get:191 http://deb.debian.org/debian sid/main amd64 python3-fonttools amd64 4.46.0-1+b1 [1382 kB] Get:192 http://deb.debian.org/debian sid/main amd64 python3-edlib amd64 1.2.7-6 [62.7 kB] Get:193 http://deb.debian.org/debian sid/main amd64 python3-contourpy amd64 1.0.7-3+b1 [194 kB] Get:194 http://deb.debian.org/debian sid/main amd64 python3-brotli amd64 1.1.0-2+b4 [309 kB] Get:195 http://deb.debian.org/debian sid/main amd64 python3-lib2to3 all 3.12.4-2 [76.8 kB] Get:196 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.12.4-1 [26.5 kB] Get:197 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.12.4-1 [27.6 kB] Get:198 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1 [1034 kB] Get:199 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:200 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:201 http://deb.debian.org/debian sid/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get:202 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get:203 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b4 [300 kB] Get:204 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get:205 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get:206 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get:207 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2 [144 kB] Get:208 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:209 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get:210 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get:211 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b1 [54.2 kB] Get:212 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get:213 http://deb.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1+b1 [17.0 kB] Get:214 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.14-1 [784 kB] Get:215 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get:216 http://deb.debian.org/debian sid/main amd64 libopenblas-pthread-dev amd64 0.3.27+ds-2 [4780 kB] Get:217 http://deb.debian.org/debian sid/main amd64 libopenblas0-pthread amd64 0.3.27+ds-2 [6813 kB] Get:218 http://deb.debian.org/debian sid/main amd64 libopenblas0 amd64 0.3.27+ds-2 [39.0 kB] Get:219 http://deb.debian.org/debian sid/main amd64 libopenblas-dev amd64 0.3.27+ds-2 [52.3 kB] Get:220 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get:221 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get:222 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 70.3.0-2 [264 kB] Get:223 http://deb.debian.org/debian sid/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b1 [29.1 kB] Get:224 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:225 http://deb.debian.org/debian sid/main amd64 libimagequant0 amd64 2.18.0-1+b1 [35.3 kB] Get:226 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get:227 http://deb.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get:228 http://deb.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get:229 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get:230 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get:231 http://deb.debian.org/debian sid/main amd64 libraqm0 amd64 0.10.1-1+b1 [14.2 kB] Get:232 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get:233 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get:234 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get:235 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [113 kB] Get:236 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.4.0-0.1 [311 kB] Get:237 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get:238 http://deb.debian.org/debian sid/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [110 kB] Get:239 http://deb.debian.org/debian sid/main amd64 libwebpmux3 amd64 1.4.0-0.1 [123 kB] Get:240 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get:241 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-2 [115 kB] Get:242 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-2 [105 kB] Get:243 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB] Get:244 http://deb.debian.org/debian sid/main amd64 python3-cairo amd64 1.26.1-1+b1 [114 kB] Get:245 http://deb.debian.org/debian sid/main amd64 python3-freetype all 2.4.0-2 [78.6 kB] Get:246 http://deb.debian.org/debian sid/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get:247 http://deb.debian.org/debian sid/main amd64 fonts-lyx all 2.4.1-2 [189 kB] Get:248 http://deb.debian.org/debian sid/main amd64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get:249 http://deb.debian.org/debian sid/main amd64 python3-six all 1.16.0-7 [16.4 kB] Get:250 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-2 [79.4 kB] Get:251 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get:252 http://deb.debian.org/debian sid/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get:253 http://deb.debian.org/debian sid/main amd64 python3-zipp all 3.19.2-2 [10.2 kB] Get:254 http://deb.debian.org/debian sid/main amd64 python3-importlib-metadata all 8.2.0-1 [20.4 kB] Get:255 http://deb.debian.org/debian sid/main amd64 python3-attr all 23.2.0-2 [65.5 kB] Get:256 http://deb.debian.org/debian sid/main amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get:257 http://deb.debian.org/debian sid/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get:258 http://deb.debian.org/debian sid/main amd64 python3-sympy all 1.13.1-1 [4147 kB] Get:259 http://deb.debian.org/debian sid/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get:260 http://deb.debian.org/debian sid/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get:261 http://deb.debian.org/debian sid/main amd64 python3-fs all 2.4.16-4 [95.4 kB] Get:262 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:263 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get:264 http://deb.debian.org/debian sid/main amd64 libxslt1.1 amd64 1.1.35-1.1 [232 kB] Get:265 http://deb.debian.org/debian sid/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get:266 http://deb.debian.org/debian sid/main amd64 python3-packaging all 24.1-1 [45.8 kB] Get:267 http://deb.debian.org/debian sid/main amd64 libqhull-r8.0 amd64 2020.2-6+b1 [245 kB] Get:268 http://deb.debian.org/debian sid/main amd64 libpython3.12-stdlib amd64 3.12.4-3 [1950 kB] Get:269 http://deb.debian.org/debian sid/main amd64 libpython3.12t64 amd64 3.12.4-3 [2114 kB] Get:270 http://deb.debian.org/debian sid/main amd64 libpython3.12-dev amd64 3.12.4-3 [5077 kB] Get:271 http://deb.debian.org/debian sid/main amd64 python3.12 amd64 3.12.4-3 [664 kB] Get:272 http://deb.debian.org/debian sid/main amd64 python3.12-dev amd64 3.12.4-3 [499 kB] Get:273 http://deb.debian.org/debian sid/main amd64 fonts-lato all 2.015-1 [2780 kB] Get:274 http://deb.debian.org/debian sid/main amd64 sphinx-rtd-theme-common all 2.0.0+dfsg-2 [1021 kB] Get:275 http://deb.debian.org/debian sid/main amd64 xml-core all 0.19 [20.1 kB] Get:276 http://deb.debian.org/debian sid/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get:277 http://deb.debian.org/debian sid/main amd64 python3-sphinxcontrib.jquery all 4.1-5 [7348 B] Get:278 http://deb.debian.org/debian sid/main amd64 python3-defusedxml all 0.7.1-2 [43.3 kB] Get:279 http://deb.debian.org/debian sid/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get:280 http://deb.debian.org/debian sid/main amd64 python3-babel all 2.14.0-1 [111 kB] Get:281 http://deb.debian.org/debian sid/main amd64 python-babel-localedata all 2.14.0-1 [5701 kB] Get:282 http://deb.debian.org/debian sid/main amd64 python3-jinja2 all 3.1.3-1 [119 kB] Get:283 http://deb.debian.org/debian sid/main amd64 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get:284 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:285 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2024.6.2-1 [157 kB] Get:286 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get:287 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.6-2.1 [38.6 kB] Get:288 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 2.0.7-2 [111 kB] Get:289 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get:290 http://deb.debian.org/debian sid/main amd64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get:291 http://deb.debian.org/debian sid/main amd64 sphinx-common all 7.3.7-4 [731 kB] Get:292 http://deb.debian.org/debian sid/main amd64 libjs-sphinxdoc all 7.3.7-4 [154 kB] Get:293 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.12.4-1 [9500 B] Get:294 http://deb.debian.org/debian sid/main amd64 mount amd64 2.40.2-1 [154 kB] Get:295 http://deb.debian.org/debian sid/main amd64 mawk amd64 1.3.4.20240622-2 [136 kB] Get:296 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:297 http://deb.debian.org/debian sid/main amd64 cpp-14-x86-64-linux-gnu amd64 14.1.0-5 [11.1 MB] Get:298 http://deb.debian.org/debian sid/main amd64 g++ amd64 4:14.1.0-2 [1344 B] Get:299 http://deb.debian.org/debian sid/main amd64 gcc amd64 4:14.1.0-2 [5136 B] Get:300 http://deb.debian.org/debian sid/main amd64 cpp amd64 4:14.1.0-2 [1568 B] Get:301 http://deb.debian.org/debian sid/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2 [4784 B] Get:302 http://deb.debian.org/debian sid/main amd64 libgcc-14-dev amd64 14.1.0-5 [2674 kB] Get:303 http://deb.debian.org/debian sid/main amd64 gcc-14-x86-64-linux-gnu amd64 14.1.0-5 [21.4 MB] Get:304 http://deb.debian.org/debian sid/main amd64 libstdc++-14-dev amd64 14.1.0-5 [2342 kB] Get:305 http://deb.debian.org/debian sid/main amd64 g++-14-x86-64-linux-gnu amd64 14.1.0-5 [12.1 MB] Get:306 http://deb.debian.org/debian sid/main amd64 cpp-14 amd64 14.1.0-5 [1276 B] Get:307 http://deb.debian.org/debian sid/main amd64 gcc-14 amd64 14.1.0-5 [518 kB] Get:308 http://deb.debian.org/debian sid/main amd64 g++-14 amd64 14.1.0-5 [18.2 kB] Get:309 http://deb.debian.org/debian sid/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2 [1436 B] Get:310 http://deb.debian.org/debian sid/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2 [1204 B] Get:311 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get:312 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get:313 http://deb.debian.org/debian sid/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-2 [186 kB] Get:314 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.62.1-2 [74.9 kB] Get:315 http://deb.debian.org/debian sid/main amd64 libnghttp3-9 amd64 1.4.0-1 [63.1 kB] Get:316 http://deb.debian.org/debian sid/main amd64 libngtcp2-16 amd64 1.6.0-1 [122 kB] Get:317 http://deb.debian.org/debian sid/main amd64 libngtcp2-crypto-gnutls8 amd64 1.6.0-1 [19.6 kB] Get:318 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get:319 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get:320 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.0-6 [216 kB] Get:321 http://deb.debian.org/debian sid/main amd64 libcurl3t64-gnutls amd64 8.9.1-1 [470 kB] Get:322 http://deb.debian.org/debian sid/main amd64 libfontenc1 amd64 1:1.1.8-1 [23.0 kB] Get:323 http://deb.debian.org/debian sid/main amd64 libhtscodecs2 amd64 1.6.0-1+b1 [93.0 kB] Get:324 http://deb.debian.org/debian sid/main amd64 libhts3t64 amd64 1.20+ds-1 [452 kB] Get:325 http://deb.debian.org/debian sid/main amd64 libparasail-dev amd64 2.6.2+dfsg-1+b1 [1496 kB] Get:326 http://deb.debian.org/debian sid/main amd64 libparasail8 amd64 2.6.2+dfsg-1+b1 [1914 kB] Get:327 http://deb.debian.org/debian sid/main amd64 libpcre3 amd64 2:8.39-15+b1 [342 kB] Get:328 http://deb.debian.org/debian sid/main amd64 libss2 amd64 1.47.1-1 [27.6 kB] Get:329 http://deb.debian.org/debian sid/main amd64 xtl-dev all 0.7.5-3 [89.8 kB] Get:330 http://deb.debian.org/debian sid/main amd64 libxsimd-dev amd64 13.0.0-1 [129 kB] Get:331 http://deb.debian.org/debian sid/main amd64 mailcap all 3.72 [32.6 kB] Get:332 http://deb.debian.org/debian sid/main amd64 python3-more-itertools all 10.3.0-1 [62.0 kB] Get:333 http://deb.debian.org/debian sid/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get:334 http://deb.debian.org/debian sid/main amd64 python3-ply all 3.11-6 [63.7 kB] Get:335 http://deb.debian.org/debian sid/main amd64 python3-py all 1.11.0-2 [88.7 kB] Get:336 http://deb.debian.org/debian sid/main amd64 python3-pysam amd64 0.22.1+ds-2+b1 [3474 kB] Get:337 http://deb.debian.org/debian sid/main amd64 python3-pytest all 8.3.2-1 [249 kB] Get:338 http://deb.debian.org/debian sid/main amd64 python3-tqdm all 4.66.4-2 [90.0 kB] Get:339 http://deb.debian.org/debian sid/main amd64 python3-pychopper all 2.7.10-1 [137 kB] Get:340 http://deb.debian.org/debian sid/main amd64 python3-setuptools all 70.3.0-2 [504 kB] Get:341 http://deb.debian.org/debian sid/main amd64 python3-pythran amd64 0.16.1+ds-3 [447 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 338 MB in 3s (106 MB/s) (Reading database ... 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Unpacking perl-modules-5.38 (5.38.2-5) ... dpkg: libdb5.3:amd64: dependency problems, but removing anyway as you requested: libpython3.9-stdlib:amd64 depends on libdb5.3. libperl5.36:amd64 depends on libdb5.3. libperl5.32:amd64 depends on libdb5.3. libpam-modules:amd64 depends on libdb5.3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49202 files and directories currently installed.) Removing libdb5.3:amd64 (5.3.28+dfsg2-1) ... Selecting previously unselected package libdb5.3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49196 files and directories currently installed.) Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-7_amd64.deb ... Unpacking libdb5.3t64:amd64 (5.3.28+dfsg2-7) ... Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-7) ... dpkg: libgdbm6:amd64: dependency problems, but removing anyway as you requested: libperl5.36:amd64 depends on libgdbm6 (>= 1.21). libperl5.32:amd64 depends on libgdbm6 (>= 1.18-3). libgdbm-compat4:amd64 depends on libgdbm6 (>= 1.16). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49202 files and directories currently installed.) Removing libgdbm6:amd64 (1.23-3) ... Selecting previously unselected package libgdbm6t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49196 files and directories currently installed.) Preparing to unpack .../libgdbm6t64_1.23-6_amd64.deb ... Unpacking libgdbm6t64:amd64 (1.23-6) ... dpkg: libgdbm-compat4:amd64: dependency problems, but removing anyway as you requested: libperl5.36:amd64 depends on libgdbm-compat4 (>= 1.18-3). libperl5.32:amd64 depends on libgdbm-compat4 (>= 1.18-3). (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49197 files and directories currently installed.) Preparing to unpack .../libgdbm-compat4t64_1.23-6_amd64.deb ... Unpacking libgdbm-compat4t64:amd64 (1.23-6) ... Selecting previously unselected package libperl5.38t64:amd64. Preparing to unpack .../libperl5.38t64_5.38.2-5_amd64.deb ... Unpacking libperl5.38t64:amd64 (5.38.2-5) ... Preparing to unpack .../perl-base_5.38.2-5_amd64.deb ... Unpacking perl-base (5.38.2-5) over (5.36.0-7+deb12u1) ... Setting up perl-base (5.38.2-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49730 files and directories currently installed.) Preparing to unpack .../libbz2-1.0_1.0.8-5.1_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.8-5.1) over (1.0.8-5+b1) ... Setting up libbz2-1.0:amd64 (1.0.8-5.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49729 files and directories currently installed.) Preparing to unpack .../debconf_1.5.87_all.deb ... Unpacking debconf (1.5.87) over (1.5.82) ... Setting up debconf (1.5.87) ... Installing new version of config file /etc/debconf.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49728 files and directories currently installed.) Preparing to unpack .../libpam0g_1.5.3-7_amd64.deb ... Unpacking libpam0g:amd64 (1.5.3-7) over (1.5.2-6+deb12u1) ... Setting up libpam0g:amd64 (1.5.3-7) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49729 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.3-7_amd64.deb ... Unpacking libpam-modules-bin (1.5.3-7) over (1.5.2-6+deb12u1) ... Setting up libpam-modules-bin (1.5.3-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49728 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.3-7_amd64.deb ... Unpacking libpam-modules:amd64 (1.5.3-7) over (1.5.2-6+deb12u1) ... dpkg: warning: unable to delete old directory '/lib/x86_64-linux-gnu/security': Directory not empty Setting up libpam-modules:amd64 (1.5.3-7) ... Installing new version of config file /etc/security/namespace.init ... dpkg: libreadline8:amd64: dependency problems, but removing anyway as you requested: libpython3.9-stdlib:amd64 depends on libreadline8 (>= 7.0~beta). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49728 files and directories currently installed.) Removing libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libreadline8t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49715 files and directories currently installed.) Preparing to unpack .../libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Preparing to unpack .../readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) over (8.2-1.3) ... Preparing to unpack .../libncursesw6_6.5-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5-2) over (6.4-4) ... Preparing to unpack .../libtinfo6_6.5-2_amd64.deb ... Unpacking libtinfo6:amd64 (6.5-2) over (6.4-4) ... Setting up libtinfo6:amd64 (6.5-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49736 files and directories currently installed.) Preparing to unpack .../tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) over (2024a-0+deb12u1) ... Preparing to unpack .../libffi8_3.4.6-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.6-1) over (3.4.4-1) ... Setting up libffi8:amd64 (3.4.6-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48952 files and directories currently installed.) Preparing to unpack .../liblzma5_5.6.2-2_amd64.deb ... Unpacking liblzma5:amd64 (5.6.2-2) over (5.4.1-0.2) ... Setting up liblzma5:amd64 (5.6.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48952 files and directories currently installed.) Preparing to unpack .../libsqlite3-0_3.46.0-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.0-1) over (3.40.1-2) ... dpkg: libtirpc3:amd64: dependency problems, but removing anyway as you requested: libpython3.9-stdlib:amd64 depends on libtirpc3 (>= 1.0.2). libnsl2:amd64 depends on libtirpc3 (>= 1.0.2). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48952 files and directories currently installed.) Removing libtirpc3:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48945 files and directories currently installed.) Preparing to unpack .../libtirpc3t64_1.3.4+ds-1.3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Preparing to unpack .../libnsl2_1.3.0-3+b2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b2) over (1.3.0-2) ... Preparing to unpack .../linux-libc-dev_6.9.12-1_all.deb ... Unpacking linux-libc-dev (6.9.12-1) over (6.1.94-1) ... Selecting previously unselected package gcc-14-base:amd64. Preparing to unpack .../gcc-14-base_14.1.0-5_amd64.deb ... Unpacking gcc-14-base:amd64 (14.1.0-5) ... Setting up gcc-14-base:amd64 (14.1.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50642 files and directories currently installed.) Preparing to unpack .../libgcc-s1_14.1.0-5_amd64.deb ... Unpacking libgcc-s1:amd64 (14.1.0-5) over (12.2.0-14) ... Setting up libgcc-s1:amd64 (14.1.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50642 files and directories currently installed.) Preparing to unpack .../debianutils_5.20_amd64.deb ... Unpacking debianutils (5.20) over (5.7-0.5~deb12u1) ... Setting up debianutils (5.20) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50641 files and directories currently installed.) Preparing to unpack .../bash_5.2.21-2.1_amd64.deb ... Unpacking bash (5.2.21-2.1) over (5.2.15-2+b7) ... Setting up bash (5.2.21-2.1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50640 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.40.2-1_amd64.deb ... Unpacking bsdutils (1:2.40.2-1) over (1:2.38.1-5+deb12u1) ... Setting up bsdutils (1:2.40.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50641 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-2+b1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.3.0+dfsg-2+b1) over (2:6.2.1+dfsg1-1.1) ... Setting up libgmp10:amd64 (2:6.3.0+dfsg-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50642 files and directories currently installed.) Preparing to unpack .../archives/usrmerge_39_all.deb ... Unpacking usrmerge (39) over (37~deb12u1) ... Setting up perl-modules-5.38 (5.38.2-5) ... Setting up libgdbm6t64:amd64 (1.23-6) ... Setting up libgdbm-compat4t64:amd64 (1.23-6) ... Setting up libperl5.38t64:amd64 (5.38.2-5) ... Setting up perl (5.38.2-5) ... Setting up usrmerge (39) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50642 files and directories currently installed.) Preparing to unpack .../coreutils_9.4-3.1_amd64.deb ... Unpacking coreutils (9.4-3.1) over (9.1-1) ... Setting up coreutils (9.4-3.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50647 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-9_amd64.deb ... Unpacking dash (0.5.12-9) over (0.5.12-2) ... Setting up dash (0.5.12-9) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50644 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.10-1_amd64.deb ... Unpacking diffutils (1:3.10-1) over (1:3.8-4) ... Setting up diffutils (1:3.10-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50646 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.49-2_amd64.deb ... Unpacking libgpg-error0:amd64 (1.49-2) over (1.46-1) ... Setting up libgpg-error0:amd64 (1.49-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50646 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.11.0-5_amd64.deb ... Unpacking libgcrypt20:amd64 (1.11.0-5) over (1.10.1-3) ... Setting up libgcrypt20:amd64 (1.11.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50646 files and directories currently installed.) Preparing to unpack .../libstdc++6_14.1.0-5_amd64.deb ... Unpacking libstdc++6:amd64 (14.1.0-5) over (12.2.0-14) ... Setting up libstdc++6:amd64 (14.1.0-5) ... dpkg: libnettle8:amd64: dependency problems, but removing anyway as you requested: libhogweed6:amd64 depends on libnettle8. libgnutls30:amd64 depends on libnettle8 (>= 3.7~). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50646 files and directories currently installed.) Removing libnettle8:amd64 (3.8.1-2) ... Selecting previously unselected package libnettle8t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50638 files and directories currently installed.) Preparing to unpack .../libnettle8t64_3.10-1_amd64.deb ... Unpacking libnettle8t64:amd64 (3.10-1) ... Setting up libnettle8t64:amd64 (3.10-1) ... dpkg: libhogweed6:amd64: dependency problems, but removing anyway as you requested: libgnutls30:amd64 depends on libhogweed6 (>= 3.6). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50647 files and directories currently installed.) Removing libhogweed6:amd64 (3.8.1-2) ... Selecting previously unselected package libhogweed6t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50641 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.10-1_amd64.deb ... Unpacking libhogweed6t64:amd64 (3.10-1) ... Setting up libhogweed6t64:amd64 (3.10-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50648 files and directories currently installed.) Preparing to unpack .../libunistring5_1.2-1_amd64.deb ... Unpacking libunistring5:amd64 (1.2-1) ... Setting up libunistring5:amd64 (1.2-1) ... dpkg: libgnutls30:amd64: dependency problems, but removing anyway as you requested: apt depends on libgnutls30 (>= 3.7.5). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50654 files and directories currently installed.) Removing libgnutls30:amd64 (3.7.9-2+deb12u3) ... Selecting previously unselected package libgnutls30t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50625 files and directories currently installed.) Preparing to unpack .../libgnutls30t64_3.8.6-2_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.6-2) ... Setting up libgnutls30t64:amd64 (3.8.6-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50654 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.7-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.7-2) over (2.3.3-1+b1) ... Setting up libidn2-0:amd64 (2.3.7-2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50655 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.2-2+b1_amd64.deb ... Unpacking libxxhash0:amd64 (0.8.2-2+b1) over (0.8.1-1) ... Setting up libxxhash0:amd64 (0.8.2-2+b1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50656 files and directories currently installed.) Preparing to unpack .../libudev1_256.4-2_amd64.deb ... Unpacking libudev1:amd64 (256.4-2) over (252.26-1~deb12u2) ... Setting up libudev1:amd64 (256.4-2) ... dpkg: libapt-pkg6.0:amd64: dependency problems, but removing anyway as you requested: apt depends on libapt-pkg6.0 (>= 2.6.1). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50656 files and directories currently installed.) Removing libapt-pkg6.0:amd64 (2.6.1) ... Selecting previously unselected package libapt-pkg6.0t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50607 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.9.7_amd64.deb ... Unpacking libapt-pkg6.0t64:amd64 (2.9.7) ... Setting up libapt-pkg6.0t64:amd64 (2.9.7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50657 files and directories currently installed.) Preparing to unpack .../archives/apt_2.9.7_amd64.deb ... Unpacking apt (2.9.7) over (2.6.1) ... Setting up apt (2.9.7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50653 files and directories currently installed.) Preparing to unpack .../tar_1.35+dfsg-3_amd64.deb ... Unpacking tar (1.35+dfsg-3) over (1.34+dfsg-1.2+deb12u1) ... Setting up tar (1.35+dfsg-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50654 files and directories currently installed.) Preparing to unpack .../dpkg_1.22.10_amd64.deb ... Unpacking dpkg (1.22.10) over (1.21.22) ... Setting up dpkg (1.22.10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50641 files and directories currently installed.) Preparing to unpack .../findutils_4.10.0-2_amd64.deb ... Unpacking findutils (4.10.0-2) over (4.9.0-4) ... Setting up findutils (4.10.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50639 files and directories currently installed.) Preparing to unpack .../archives/grep_3.11-4_amd64.deb ... Unpacking grep (3.11-4) over (3.8-5) ... Setting up grep (3.11-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50639 files and directories currently installed.) Preparing to unpack .../gzip_1.12-1.1_amd64.deb ... Unpacking gzip (1.12-1.1) over (1.12-1) ... dpkg: warning: old file '/bin/uncompress' is the same as several new files! (both '/usr/bin/gunzip' and '/usr/bin/uncompress') dpkg: warning: old file '/bin/gunzip' is the same as several new files! (both '/usr/bin/gunzip' and '/usr/bin/uncompress') Setting up gzip (1.12-1.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50639 files and directories currently installed.) Preparing to unpack .../hostname_3.23+nmu2_amd64.deb ... Unpacking hostname (3.23+nmu2) over (3.23+nmu1) ... Setting up hostname (3.23+nmu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50639 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.5-2_amd64.deb ... Unpacking ncurses-bin (6.5-2) over (6.4-4) ... Setting up ncurses-bin (6.5-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50639 files and directories currently installed.) Preparing to unpack .../archives/sed_4.9-2_amd64.deb ... Unpacking sed (4.9-2) over (4.9-1) ... Setting up sed (4.9-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50639 files and directories currently installed.) Preparing to unpack .../libblkid1_2.40.2-1_amd64.deb ... Unpacking libblkid1:amd64 (2.40.2-1) over (2.38.1-5+deb12u1) ... Setting up libblkid1:amd64 (2.40.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50640 files and directories currently installed.) Preparing to unpack .../libmount1_2.40.2-1_amd64.deb ... Unpacking libmount1:amd64 (2.40.2-1) over (2.38.1-5+deb12u1) ... Setting up libmount1:amd64 (2.40.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50641 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.40.2-1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.40.2-1) over (2.38.1-5+deb12u1) ... Setting up libsmartcols1:amd64 (2.40.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50642 files and directories currently installed.) Preparing to unpack .../libuuid1_2.40.2-1_amd64.deb ... Unpacking libuuid1:amd64 (2.40.2-1) over (2.38.1-5+deb12u1) ... Setting up libuuid1:amd64 (2.40.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50643 files and directories currently installed.) Preparing to unpack .../util-linux_2.40.2-1_amd64.deb ... Unpacking util-linux (2.40.2-1) over (2.38.1-5+deb12u1) ... Setting up util-linux (2.40.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50617 files and directories currently installed.) Preparing to unpack .../util-linux-extra_2.40.2-1_amd64.deb ... Adding 'diversion of /sbin/ctrlaltdel to /sbin/ctrlaltdel.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/fsck.cramfs to /sbin/fsck.cramfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/fsck.minix to /sbin/fsck.minix.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.bfs to /sbin/mkfs.bfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.cramfs to /sbin/mkfs.cramfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.minix to /sbin/mkfs.minix.usr-is-merged by util-linux-extra' Unpacking util-linux-extra (2.40.2-1) over (2.38.1-5+deb12u1) ... dpkg: warning: unable to delete old directory '/usr/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/usr/lib/udev': Directory not empty Setting up util-linux-extra (2.40.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50657 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.272_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.272) over (0.270) ... Setting up libdebconfclient0:amd64 (0.272) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50657 files and directories currently installed.) Preparing to unpack .../base-passwd_3.6.4_amd64.deb ... Unpacking base-passwd (3.6.4) over (3.6.1) ... Setting up base-passwd (3.6.4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50657 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.5.3-7_all.deb ... Unpacking libpam-runtime (1.5.3-7) over (1.5.2-6+deb12u1) ... Setting up libpam-runtime (1.5.3-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50656 files and directories currently installed.) Preparing to unpack .../libmd0_1.1.0-2_amd64.deb ... Unpacking libmd0:amd64 (1.1.0-2) over (1.0.4-2) ... Setting up libmd0:amd64 (1.1.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50656 files and directories currently installed.) Preparing to unpack .../libbsd0_0.12.2-1_amd64.deb ... Unpacking libbsd0:amd64 (0.12.2-1) over (0.11.7-2) ... Setting up libbsd0:amd64 (0.12.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50656 files and directories currently installed.) Preparing to unpack .../login_1%3a4.15.3-3_amd64.deb ... Unpacking login (1:4.15.3-3) over (1:4.13+dfsg1-1+b1) ... Setting up login (1:4.15.3-3) ... Installing new version of config file /etc/login.defs ... Installing new version of config file /etc/pam.d/login ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50618 files and directories currently installed.) Preparing to unpack .../libacl1_2.3.2-2_amd64.deb ... Unpacking libacl1:amd64 (2.3.2-2) over (2.3.1-3) ... Setting up libacl1:amd64 (2.3.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50618 files and directories currently installed.) Preparing to unpack .../libattr1_1%3a2.5.2-1_amd64.deb ... Unpacking libattr1:amd64 (1:2.5.2-1) over (1:2.5.1-4) ... Setting up libattr1:amd64 (1:2.5.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50618 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.5-1_all.deb ... Unpacking libsemanage-common (3.5-1) over (3.4-1) ... Setting up libsemanage-common (3.5-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50607 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.66_all.deb ... Unpacking init-system-helpers (1.66) over (1.65.2) ... Setting up init-system-helpers (1.66) ... (Reading database ... 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Selecting previously unselected package gcc-13-base:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50605 files and directories currently installed.) Preparing to unpack .../00-gcc-13-base_13.3.0-4_amd64.deb ... Unpacking gcc-13-base:amd64 (13.3.0-4) ... Preparing to unpack .../01-libgomp1_14.1.0-5_amd64.deb ... Unpacking libgomp1:amd64 (14.1.0-5) over (12.2.0-14) ... Preparing to unpack .../02-libitm1_14.1.0-5_amd64.deb ... 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Preparing to unpack .../32-libboost-dev_1.83.0.2+b2_amd64.deb ... Unpacking libboost-dev:amd64 (1.83.0.2+b2) over (1.74.0.3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 51714 files and directories currently installed.) Removing libboost1.74-dev:amd64 (1.74.0+ds1-21) ... Selecting previously unselected package libboost1.83-dev:amd64. (Reading database ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:amd64 (1.47.1-1) ... Setting up libcom-err2:amd64 (1.47.1-1) ... Setting up libext2fs2t64:amd64 (1.47.1-1) ... (Reading database ... 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Unpacking e2fsprogs (1.47.1-1) over (1.47.0-2) ... dpkg: warning: unable to delete old directory '/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/udev': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd': Directory not empty Preparing to unpack .../libharfbuzz0b_8.3.0-2+b1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (8.3.0-2+b1) over (6.0.0+dfsg-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53174 files and directories currently installed.) Removing libglib2.0-0:amd64 (2.74.6-2+deb12u3) ... Selecting previously unselected package libglib2.0-0t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53150 files and directories currently installed.) Preparing to unpack .../libglib2.0-0t64_2.80.4-1_amd64.deb ... libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:amd64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... removed '/var/lib/dpkg/info/libglib2.0-0:amd64.postrm' Unpacking libglib2.0-0t64:amd64 (2.80.4-1) ... Preparing to unpack .../libfreetype6_2.13.2+dfsg-1+b4_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.2+dfsg-1+b4) over (2.12.1+dfsg-5+deb12u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53176 files and directories currently installed.) Removing libpng16-16:amd64 (1.6.39-2) ... Selecting previously unselected package libpng16-16t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53165 files and directories currently installed.) Preparing to unpack .../00-libpng16-16t64_1.6.43-5_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.43-5) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../01-libpython3.12-minimal_3.12.4-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.4-3) ... Selecting previously unselected package python3.12-minimal. 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Setting up libxss1:amd64 (1:1.2.3-1+b1) ... Setting up libssh2-1t64:amd64 (1.11.0-6) ... Setting up libtsan2:amd64 (14.1.0-5) ... Setting up libbinutils:amd64 (2.42.90.20240720-2) ... Setting up libisl23:amd64 (0.26-3+b2) ... Setting up libc-dev-bin (2.39-6) ... Setting up python-matplotlib-data (3.8.3-3) ... Installing new version of config file /etc/matplotlibrc ... Setting up openssl (3.2.2-1) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libwebpmux3:amd64 (1.4.0-0.1) ... Setting up mailcap (3.72) ... Setting up readline-common (8.2-4) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up sphinx-rtd-theme-common (2.0.0+dfsg-2) ... Setting up libcc1-0:amd64 (14.1.0-5) ... Setting up liblsan0:amd64 (14.1.0-5) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.6.0-1) ... Setting up libitm1:amd64 (14.1.0-5) ... Setting up libctf0:amd64 (2.42.90.20240720-2) ... Setting up python3.11-minimal (3.11.9-1) ... Setting up liblapack3:amd64 (3.12.0-3) ... Setting up cpp-12 (12.4.0-2) ... Setting up libopenblas0-pthread:amd64 (0.3.27+ds-2) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b1) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... Setting up e2fsprogs (1.47.1-1) ... Installing new version of config file /etc/cron.d/e2scrub_all ... Installing new version of config file /etc/mke2fs.conf ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 14 added, 8 removed; done. Setting up libxsimd-dev:amd64 (13.0.0-1) ... Setting up libgprofng0:amd64 (2.42.90.20240720-2) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Setting up sphinx-common (7.3.7-4) ... Setting up libgcc-12-dev:amd64 (12.4.0-2) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up cpp-14-x86-64-linux-gnu (14.1.0-5) ... Setting up cpp-14 (14.1.0-5) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up libgcc-13-dev:amd64 (13.3.0-4) ... Setting up libopenblas0:amd64 (0.3.27+ds-2) ... Setting up libxslt1.1:amd64 (1.1.35-1.1) ... Setting up libc6-dev:amd64 (2.39-6) ... Setting up libharfbuzz0b:amd64 (8.3.0-2+b1) ... Setting up libgcc-14-dev:amd64 (14.1.0-5) ... Setting up libstdc++-14-dev:amd64 (14.1.0-5) ... Setting up libstdc++-13-dev:amd64 (13.3.0-4) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Setting up binutils-x86-64-linux-gnu (2.42.90.20240720-2) ... Setting up cpp-x86-64-linux-gnu (4:14.1.0-2) ... Setting up libopenblas-pthread-dev:amd64 (0.3.27+ds-2) ... Setting up libboost1.83-dev:amd64 (1.83.0-3+b2) ... Setting up libpython3.12-stdlib:amd64 (3.12.4-3) ... Setting up libstdc++-12-dev:amd64 (12.4.0-2) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up python3.12 (3.12.4-3) ... Setting up libpython3.11t64:amd64 (3.11.9-1) ... Setting up libcurl3t64-gnutls:amd64 (8.9.1-1) ... Setting up binutils (2.42.90.20240720-2) ... Setting up libpython3.12t64:amd64 (3.12.4-3) ... Setting up libopenblas-dev:amd64 (0.3.27+ds-2) ... Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3) ... Setting up libexpat1-dev:amd64 (2.6.2-1) ... Setting up gcc-12 (12.4.0-2) ... Setting up libraqm0:amd64 (0.10.1-1+b1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1) ... Setting up cpp (4:14.1.0-2) ... Setting up libnsl2:amd64 (1.3.0-3+b2) ... Setting up libhts3t64:amd64 (1.20+ds-1) ... Setting up libboost-dev:amd64 (1.83.0.2+b2) ... Setting up gcc-14-x86-64-linux-gnu (14.1.0-5) ... Setting up libpython3-stdlib:amd64 (3.12.4-1) ... Setting up g++-12 (12.4.0-2) ... Setting up python3.11 (3.11.9-1) ... Setting up gcc-x86-64-linux-gnu (4:14.1.0-2) ... Setting up python3 (3.12.4-1) ... Setting up libpython3.12-dev:amd64 (3.12.4-3) ... Setting up python3-zipp (3.19.2-2) ... Setting up python3-freetype (2.4.0-2) ... Setting up python3-markupsafe (2.1.5-1+b1) ... Setting up python3-wheel (0.43.0-1) ... Setting up python3-tz (2024.1-2) ... Setting up gcc-14 (14.1.0-5) ... Setting up python3-six (1.16.0-7) ... Setting up python3-pil:amd64 (10.4.0-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.1-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2024.6.2-1) ... Setting up python3-snowballstemmer (2.2.0-4) ... Setting up libpython3.11-dev:amd64 (3.11.9-1) ... Setting up python3-brotli (1.1.0-2+b4) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.5-1+b1) ... Setting up python3-idna (3.6-2.1) ... Setting up python3.12-dev (3.12.4-3) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up g++-14-x86-64-linux-gnu (14.1.0-5) ... Setting up libnsl-dev:amd64 (1.3.0-3+b2) ... Setting up python3-lxml:amd64 (5.2.2-1) ... Setting up g++-x86-64-linux-gnu (4:14.1.0-2) ... Setting up python3-dateutil (2.9.0-2) ... Setting up g++-14 (14.1.0-5) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-lib2to3 (3.12.4-2) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-edlib:amd64 (1.2.7-6) ... Setting up python3-pkg-resources (70.3.0-2) ... Setting up python3-more-itertools (10.3.0-1) ... Setting up python3-sympy (1.13.1-1) ... Setting up python3-attr (23.2.0-2) ... Setting up python3-pysam (0.22.1+ds-2+b1) ... Setting up libpython3-dev:amd64 (3.12.4-1) ... Setting up python3-importlib-metadata (8.2.0-1) ... Setting up python3-setuptools (70.3.0-2) ... Setting up python3-py (1.11.0-2) ... Setting up python3-babel (2.14.0-1) ... Setting up python3-lz4 (4.0.2+dfsg-1+b4) ... Setting up python3-defusedxml (0.7.1-2) ... Setting up python3.11-dev (3.11.9-1) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-pytest (8.3.2-1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up python3-unicodedata2 (15.1.0+ds-1+b2) ... Setting up python3-ply (3.11-6) ... Setting up python3-tqdm (4.66.4-2) ... Setting up python3-all (3.12.4-1) ... Setting up gcc (4:14.1.0-2) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-pygments (2.18.0+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up libpython3-all-dev:amd64 (3.12.4-1) ... Setting up python3-dev (3.12.4-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-11) ... Setting up g++ (4:14.1.0-2) ... Setting up python3-contourpy (1.0.7-3+b1) ... Setting up python3-all-dev (3.12.4-1) ... Setting up python3-scipy (1.13.1-2) ... Setting up python3-pandas-lib:amd64 (2.2.2+dfsg-4+b1) ... Setting up python3-pandas (2.2.2+dfsg-4) ... Setting up python3-pythran (0.16.1+ds-3) ... Setting up python3-fonttools (4.46.0-1+b1) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Processing triggers for sgml-base (1.31) ... Processing triggers for debianutils (5.20) ... Setting up libfontconfig1:amd64 (2.15.0-1.1) ... Setting up libxft2:amd64 (2.3.6-1+b1) ... Setting up libtk8.6:amd64 (8.6.14-1) ... Processing triggers for libc-bin (2.39-6) ... Setting up libcairo2:amd64 (1.18.0-3+b1) ... Setting up docutils-common (0.21.2+dfsg-2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up python3-cairo (1.26.1-1+b1) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3-tk:amd64 (3.12.4-2) ... Setting up python3-pil.imagetk:amd64 (10.4.0-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-reportlab (4.2.2-1) ... Setting up python3-biopython (1.83+dfsg1-3+b1) ... Setting up python3-matplotlib (3.8.3-3) ... Setting up python3-seaborn (0.13.2-4) ... Setting up python3-pychopper (2.7.10-1) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up python3-sphinx (7.3.7-4) ... Setting up python3-sphinxcontrib.jquery (4.1-5) ... Setting up python3-sphinx-rtd-theme (2.0.0+dfsg-2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for libc-bin (2.39-6) ... 5m52.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-get', '-yf', 'dist-upgrade'] 5m52.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 5m53.6s DUMP: 3de1eff49c28c1650dc5dc7d0fd6f841 - 5m53.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 5m53.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-cache', 'show', '--no-all-versions', 'python3-pychopper'] 5m53.9s DUMP: Package: python3-pychopper Source: pychopper Version: 2.7.10-1 Installed-Size: 405 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-biopython, python3-matplotlib, python3-numpy, python3-pandas, python3-parasail, python3-pysam, python3-pytest, python3-tqdm, python3:any Description-en: identify, orient and trim full-length Nanopore cDNA reads Pychopper v2 is a Python module to identify, orient and trim full-length Nanopore cDNA reads. It is also able to rescue fused reads and provides the script 'pychopper.py'. The general approach of Pychopper v2 is the following: . * Pychopper first identifies alignment hits of the primers across the length of the sequence. The default method for doing this is using nhmmscan with the pre-trained strand specific profile HMMs, included with the package. Alternatively, one can use the edlib backend, which uses a combination of global and local alignment to identify the primers within the read. * After identifying the primer hits by either of the backends, the reads are divided into segments defined by two consecutive primer hits. The score of a segment is its length if the configuration of the flanking primer hits is valid (such as SPP,-VNP for forward reads) or zero otherwise. * The segments are assigned to rescued reads using a dynamic programming algorithm maximizing the sum of used segment scores (hence the amount of rescued bases). A crucial observation about the algorithm is that if a segment is included as a rescued read, then the next segment must be excluded as one of the primer hits defining it was "used up" by the previous segment. This put constraints on the dynamic programming graph. The arrows in read define the optimal path for rescuing two fused reads with the a total score of l1 + l3. . A crucial parameter of Pychopper v2 is -q, which determines the stringency of primer alignment (E-value in the case of the pHMM backend). This can be explicitly specified by the user, however by default it is optimized on a random sample of input reads to produce the maximum number of classified reads. Description-md5: c2116885230163a610c0268475202885 Homepage: https://github.com/epi2me-labs/pychopper Section: python Priority: optional Filename: pool/main/p/pychopper/python3-pychopper_2.7.10-1_all.deb Size: 136960 MD5sum: 450b7263b78508570f01cde695312e99 SHA256: 52549e35b4289726c20970a7050eb5840f7e9f384a68a2878c92ec37efd909b1 5m53.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-cache', 'show', '--no-all-versions', 'python3-pychopper'] 5m53.9s INFO: apt-cache knows about the following packages: python3-pychopper 5m53.9s INFO: Running scripts pre_install 5m53.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_database-server'] 5m53.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_database-server'] 5m53.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_exceptions'] 5m53.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_exceptions'] 5m53.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_extras'] 5m53.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_extras'] 5m53.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_foreign_architecture'] 5m53.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_foreign_architecture'] 5m53.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_foreign_architecture_i386'] 5m53.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_foreign_architecture_i386'] 5m53.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-cache', 'policy'] 5m54.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 5m54.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-cache', 'policy'] 5m54.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-cache', 'policy', 'python3-pychopper'] 5m54.0s DUMP: python3-pychopper: Installed: 2.7.10-1 Candidate: 2.7.10-1 Version table: *** 2.7.10-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 5m54.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-cache', 'policy', 'python3-pychopper'] 5m54.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-get', '-y', 'install', 'python3-pychopper'] 5m54.8s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-pychopper is already the newest version (2.7.10-1). The following packages were automatically installed and are no longer required: docutils-common fonts-font-awesome fonts-lato gcc-13-base libboost-dev libboost1.83-dev libgcc-13-dev libjson-perl libmpdec3 libnsl-dev libopenblas-dev libopenblas-pthread-dev libopenblas0 libparasail3 libperl5.32 libperl5.36 libpython3-all-dev libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.11t64 libpython3.9-minimal libpython3.9-stdlib libstdc++-13-dev libtiff5 libtirpc-dev libwebp6 libxsimd-dev perl-modules-5.32 perl-modules-5.36 python3-alabaster python3-all-dev python3-beniget python3-certifi python3-charset-normalizer python3-defusedxml python3-docutils python3-edlib python3-gast python3-idna python3-imagesize python3-lib2to3 python3-more-itertools python3-ply python3-py python3-pythran python3-requests python3-roman python3-seaborn python3-snowballstemmer python3-sphinx python3-sphinx-rtd-theme python3-sphinxcontrib.jquery python3-toml python3-urllib3 python3.11 python3.11-dev python3.11-minimal python3.9 python3.9-minimal sphinx-common sphinx-rtd-theme-common ucf xtl-dev Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 5m54.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-get', '-y', 'install', 'python3-pychopper'] 5m54.8s INFO: Running scripts post_install 5m54.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_install_exceptions'] 5m54.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_install_exceptions'] 5m54.8s INFO: Running scripts post_distupgrade 5m54.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_distupgrade_base_cleanup'] 5m54.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_distupgrade_base_cleanup'] 5m54.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_distupgrade_exceptions'] 5m54.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_distupgrade_exceptions'] 5m54.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 5m54.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 5m54.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_distupgrade_squeeze-backports'] 5m54.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_distupgrade_squeeze-backports'] 5m54.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_distupgrade_zz_backports'] 5m54.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_distupgrade_zz_backports'] 5m54.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2ehoday'] 5m57.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2ehoday'] 5m57.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2ehoday'] 5m59.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2ehoday'] 5m59.0s INFO: Running scripts pre_install 5m59.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_database-server'] 5m59.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_database-server'] 5m59.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_exceptions'] 5m59.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_exceptions'] 5m59.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_extras'] 5m59.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_extras'] 5m59.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_foreign_architecture'] 5m59.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_foreign_architecture'] 5m59.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_foreign_architecture_i386'] 5m59.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_install_foreign_architecture_i386'] 5m59.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-cache', 'policy'] 5m59.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 5m59.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-cache', 'policy'] 5m59.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-cache', 'policy', 'python3-pychopper'] 5m59.2s DUMP: python3-pychopper: Installed: 2.7.10-1 Candidate: 2.7.10-1 Version table: *** 2.7.10-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 5m59.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-cache', 'policy', 'python3-pychopper'] 5m59.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-get', '-y', 'install', 'python3-pychopper=2.7.10-1'] 5m59.8s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-pychopper is already the newest version (2.7.10-1). The following packages were automatically installed and are no longer required: docutils-common fonts-font-awesome fonts-lato gcc-13-base libboost-dev libboost1.83-dev libgcc-13-dev libjson-perl libmpdec3 libnsl-dev libopenblas-dev libopenblas-pthread-dev libopenblas0 libparasail3 libperl5.32 libperl5.36 libpython3-all-dev libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.11t64 libpython3.9-minimal libpython3.9-stdlib libstdc++-13-dev libtiff5 libtirpc-dev libwebp6 libxsimd-dev perl-modules-5.32 perl-modules-5.36 python3-alabaster python3-all-dev python3-beniget python3-certifi python3-charset-normalizer python3-defusedxml python3-docutils python3-edlib python3-gast python3-idna python3-imagesize python3-lib2to3 python3-more-itertools python3-ply python3-py python3-pythran python3-requests python3-roman python3-seaborn python3-snowballstemmer python3-sphinx python3-sphinx-rtd-theme python3-sphinxcontrib.jquery python3-toml python3-urllib3 python3.11 python3.11-dev python3.11-minimal python3.9 python3.9-minimal sphinx-common sphinx-rtd-theme-common ucf xtl-dev Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 5m59.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-get', '-y', 'install', 'python3-pychopper=2.7.10-1'] 5m59.8s INFO: Running scripts post_install 5m59.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_install_exceptions'] 5m59.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_install_exceptions'] 5m59.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2ehoday'] 6m1.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2ehoday'] 6m1.9s INFO: /lib converted to /usr/lib by /usr merge 6m1.9s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 6m5.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmph2ehoday', '-ac', '--ignore-obsolete'] 6m12.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmph2ehoday', '-ac', '--ignore-obsolete'] 6m12.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 6m12.2s DUMP: 0.15.6 6m12.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 6m12.2s INFO: Running adequate version 0.15.6 now. 6m12.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'python3-pychopper'] 6m12.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'python3-pychopper'] 6m12.3s INFO: Running scripts pre_remove 6m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 6m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 6m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 6m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 6m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 6m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 6m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 6m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 6m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 6m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 6m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_remove_exceptions'] 6m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/pre_remove_exceptions'] 6m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 6m22.4s DUMP: install ok installed adduser adduser 3.137 install ok installed apt apt 2.9.7 install ok installed base-files base-files 13.3 install ok installed base-passwd base-passwd 3.6.4 install ok installed bash bash 5.2.21-2.1 install ok installed binutils binutils 2.42.90.20240720-2 install ok installed binutils-common:amd64 binutils-common 2.42.90.20240720-2 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.42.90.20240720-2 install ok installed blt blt 2.5.3+dfsg-7 install ok installed bsdutils bsdutils 1:2.40.2-1 install ok installed ca-certificates ca-certificates 20240203 install ok installed coreutils coreutils 9.4-3.1 install ok installed cpp cpp 4:14.1.0-2 install ok installed cpp-12 cpp-12 12.4.0-2 install ok installed cpp-14 cpp-14 14.1.0-5 install ok installed cpp-14-x86-64-linux-gnu cpp-14-x86-64-linux-gnu 14.1.0-5 install ok installed cpp-x86-64-linux-gnu cpp-x86-64-linux-gnu 4:14.1.0-2 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed diffutils diffutils 1:3.10-1 install ok installed docutils-common docutils-common 0.21.2+dfsg-2 install ok installed dpkg dpkg 1.22.10 install ok installed e2fsprogs e2fsprogs 1.47.1-1 install ok installed findutils findutils 4.10.0-2 install ok installed fontconfig-config fontconfig-config 2.15.0-1.1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-4.1 install ok installed fonts-lato fonts-lato 2.015-1 install ok installed fonts-lyx fonts-lyx 2.4.1-2 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-8 install ok installed g++ g++ 4:14.1.0-2 install ok installed g++-12 g++-12 12.4.0-2 install ok installed g++-14 g++-14 14.1.0-5 install ok installed g++-14-x86-64-linux-gnu g++-14-x86-64-linux-gnu 14.1.0-5 install ok installed g++-x86-64-linux-gnu g++-x86-64-linux-gnu 4:14.1.0-2 install ok installed gcc gcc 4:14.1.0-2 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-12 gcc-12 12.4.0-2 install ok installed gcc-12-base:amd64 gcc-12-base 12.4.0-2 install ok installed gcc-13-base:amd64 gcc-13-base 13.3.0-4 install ok installed gcc-14 gcc-14 14.1.0-5 install ok installed gcc-14-base:amd64 gcc-14-base 14.1.0-5 install ok installed gcc-14-x86-64-linux-gnu gcc-14-x86-64-linux-gnu 14.1.0-5 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gcc-x86-64-linux-gnu gcc-x86-64-linux-gnu 4:14.1.0-2 install ok installed gpgv gpgv 2.2.43-8 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-2 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.7 install ok installed libasan8:amd64 libasan8 14.1.0-5 install ok installed libatomic1:amd64 libatomic1 14.1.0-5 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-4 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-4+b1 install ok installed libbinutils:amd64 libbinutils 2.42.90.20240720-2 install ok installed libblas3:amd64 libblas3 3.12.0-3 install ok installed libblkid1:amd64 libblkid1 2.40.2-1 install ok installed libboost-dev:amd64 libboost-dev 1.83.0.2+b2 install ok installed libboost1.83-dev:amd64 libboost1.83-dev 1.83.0-3+b2 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b4 install ok installed libbsd0:amd64 libbsd0 0.12.2-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.39-6 install ok installed libc-dev-bin libc-dev-bin 2.39-6 install ok installed libc6:amd64 libc6 2.39-6 install ok installed libc6-dev:amd64 libc6-dev 2.39-6 install ok installed libcairo2:amd64 libcairo2 1.18.0-3+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-1+b1 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcc1-0:amd64 libcc1-0 14.1.0-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.36-4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.42.90.20240720-2 install ok installed libctf0:amd64 libctf0 2.42.90.20240720-2 install ok installed libcurl3t64-gnutls:amd64 libcurl3t64-gnutls 8.9.1-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.272 install ok installed libdeflate0:amd64 libdeflate0 1.20-1 install ok installed libexpat1:amd64 libexpat1 2.6.2-1 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.6.2-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-1.1 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.8-1 install ok installed libfreetype6:amd64 libfreetype6 2.13.2+dfsg-1+b4 install ok installed libfribidi0:amd64 libfribidi0 1.0.15-1 install ok installed libgcc-12-dev:amd64 libgcc-12-dev 12.4.0-2 install ok installed libgcc-13-dev:amd64 libgcc-13-dev 13.3.0-4 install ok installed libgcc-14-dev:amd64 libgcc-14-dev 14.1.0-5 install ok installed libgcc-s1:amd64 libgcc-s1 14.1.0-5 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-5 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.23-6 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.23-6 install ok installed libgfortran5:amd64 libgfortran5 14.1.0-5 deinstall ok config-files libglib2.0-0:amd64 libglib2.0-0 2.74.6-2+deb12u3 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.80.4-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.6-2 install ok installed libgomp1:amd64 libgomp1 14.1.0-5 install ok installed libgpg-error0:amd64 libgpg-error0 1.49-2 install ok installed libgprofng0:amd64 libgprofng0 2.42.90.20240720-2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-3 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 8.3.0-2+b1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1 install ok installed libhts3t64:amd64 libhts3t64 1.20+ds-1 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.6.0-1+b1 install ok installed libhwasan0:amd64 libhwasan0 14.1.0-5 install ok installed libicu72:amd64 libicu72 72.1-5 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libimagequant0:amd64 libimagequant0 2.18.0-1+b1 install ok installed libisl23:amd64 libisl23 0.26-3+b2 install ok installed libitm1:amd64 libitm1 14.1.0-5 install ok installed libjansson4:amd64 libjansson4 2.14-2+b2 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-3 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 7.3.7-4 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libjson-perl libjson-perl 4.10000-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-3 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-3 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-3 install ok installed liblapack3:amd64 liblapack3 3.12.0-3 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1+b1 install ok installed liblcms2-2:amd64 liblcms2-2 2.14-2+b1 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.18+dfsg-2 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-4+b1 install ok installed liblsan0:amd64 liblsan0 14.1.0-5 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3 install ok installed liblzma5:amd64 liblzma5 5.6.2-2 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40.2-1 install ok installed libmpc3:amd64 libmpc3 1.3.1-1+b2 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-1 install ok installed libmpfr6:amd64 libmpfr6 4.2.1-1+b1 install ok installed libncursesw6:amd64 libncursesw6 6.5-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.62.1-2 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.4.0-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.6.0-1 install ok installed libngtcp2-crypto-gnutls8:amd64 libngtcp2-crypto-gnutls8 1.6.0-1 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-3+b2 install ok installed libnsl2:amd64 libnsl2 1.3.0-3+b2 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libopenblas-dev:amd64 libopenblas-dev 0.3.27+ds-2 install ok installed libopenblas-pthread-dev:amd64 libopenblas-pthread-dev 0.3.27+ds-2 install ok installed libopenblas0:amd64 libopenblas0 0.3.27+ds-2 install ok installed libopenblas0-pthread:amd64 libopenblas0-pthread 0.3.27+ds-2 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2+b3 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libparasail-dev:amd64 libparasail-dev 2.6.2+dfsg-1+b1 install ok installed libparasail3:amd64 libparasail3 2.4.3+dfsg-2 install ok installed libparasail8:amd64 libparasail8 2.6.2+dfsg-1+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libpcre3:amd64 libpcre3 2:8.39-15+b1 install ok installed libperl5.32:amd64 libperl5.32 5.32.1-4+deb11u3 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-7+deb12u1 install ok installed libperl5.38t64:amd64 libperl5.38t64 5.38.2-5 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.42.2-1+b1 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.43-5 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1 install ok installed libpython3-all-dev:amd64 libpython3-all-dev 3.12.4-1 install ok installed libpython3-dev:amd64 libpython3-dev 3.12.4-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.12.4-1 install ok installed libpython3.11-dev:amd64 libpython3.11-dev 3.11.9-1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.9-1 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.9-1 install ok installed libpython3.11t64:amd64 libpython3.11t64 3.11.9-1 install ok installed libpython3.12-dev:amd64 libpython3.12-dev 3.12.4-3 install ok installed libpython3.12-minimal:amd64 libpython3.12-minimal 3.12.4-3 install ok installed libpython3.12-stdlib:amd64 libpython3.12-stdlib 3.12.4-3 install ok installed libpython3.12t64:amd64 libpython3.12t64 3.12.4-3 install ok installed libpython3.9-minimal:amd64 libpython3.9-minimal 3.9.2-1 install ok installed libpython3.9-stdlib:amd64 libpython3.9-stdlib 3.9.2-1 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-6+b1 install ok installed libquadmath0:amd64 libquadmath0 14.1.0-5 install ok installed libraqm0:amd64 libraqm0 0.10.1-1+b1 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-4 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b4 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-6 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-6 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b3 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b4 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsepol2:amd64 libsepol2 3.5-2+b1 install ok installed libsframe1:amd64 libsframe1 2.42.90.20240720-2 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.4.0-0.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.0-1 install ok installed libss2:amd64 libss2 1.47.1-1 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.0-6 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libssl3t64:amd64 libssl3t64 3.2.2-1 install ok installed libstdc++-12-dev:amd64 libstdc++-12-dev 12.4.0-2 install ok installed libstdc++-13-dev:amd64 libstdc++-13-dev 13.3.0-4 install ok installed libstdc++-14-dev:amd64 libstdc++-14-dev 14.1.0-5 install ok installed libstdc++6:amd64 libstdc++6 14.1.0-5 install ok installed libsystemd0:amd64 libsystemd0 256.4-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.14+dfsg-1 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtiff5:amd64 libtiff5 4.2.0-1+deb11u5 install ok installed libtiff6:amd64 libtiff6 4.5.1+git230720-4 install ok installed libtinfo6:amd64 libtinfo6 6.5-2 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1.3 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.4+ds-1.3 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.4+ds-1.3 install ok installed libtk8.6:amd64 libtk8.6 8.6.14-1 install ok installed libtsan2:amd64 libtsan2 14.1.0-5 install ok installed libubsan1:amd64 libubsan1 14.1.0-5 install ok installed libudev1:amd64 libudev1 256.4-2 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40.2-1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2.1+deb11u2 install ok installed libwebp7:amd64 libwebp7 1.4.0-0.1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.4.0-0.1 install ok installed libwebpmux3:amd64 libwebpmux3 1.4.0-0.1 install ok installed libx11-6:amd64 libx11-6 2:1.8.7-1+b1 install ok installed libx11-data libx11-data 2:1.8.7-1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1+b1 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2 install ok installed libxcb1:amd64 libxcb1 1.17.0-2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3+b1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxft2:amd64 libxft2 2.3.6-1+b1 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg-3+b1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1+b1 install ok installed libxsimd-dev:amd64 libxsimd-dev 13.0.0-1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1.1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1 install ok installed linux-libc-dev linux-libc-dev 6.9.12-1 install ok installed login login 1:4.15.3-3 install ok installed logsave logsave 1.47.1-1 install ok installed lsb-base lsb-base 11.6 install ok installed mailcap mailcap 3.72 install ok installed mawk mawk 1.3.4.20240622-2 install ok installed media-types media-types 10.1.0 install ok installed mime-support mime-support 3.66 install ok installed mount mount 2.40.2-1 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2 install ok installed netbase netbase 6.4 install ok installed openssl openssl 3.2.2-1 install ok installed passwd passwd 1:4.15.3-3 install ok installed perl perl 5.38.2-5 install ok installed perl-base perl-base 5.38.2-5 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-4+deb11u3 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-7+deb12u1 install ok installed perl-modules-5.38 perl-modules-5.38 5.38.2-5 install ok installed python-babel-localedata python-babel-localedata 2.14.0-1 install ok installed python-matplotlib-data python-matplotlib-data 3.8.3-3 install ok installed python3 python3 3.12.4-1 install ok installed python3-alabaster python3-alabaster 0.7.16-0.1 install ok installed python3-all python3-all 3.12.4-1 install ok installed python3-all-dev python3-all-dev 3.12.4-1 install ok installed python3-appdirs python3-appdirs 1.4.4-4 install ok installed python3-attr python3-attr 23.2.0-2 install ok installed python3-babel python3-babel 2.14.0-1 install ok installed python3-beniget python3-beniget 0.4.1-3 install ok installed python3-biopython python3-biopython 1.83+dfsg1-3+b1 install ok installed python3-brotli python3-brotli 1.1.0-2+b4 install ok installed python3-cairo python3-cairo 1.26.1-1+b1 install ok installed python3-certifi python3-certifi 2024.6.2-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-1 install ok installed python3-charset-normalizer python3-charset-normalizer 3.3.2-1 install ok installed python3-contourpy python3-contourpy 1.0.7-3+b1 install ok installed python3-cycler python3-cycler 0.12.1-1 install ok installed python3-dateutil python3-dateutil 2.9.0-2 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-defusedxml python3-defusedxml 0.7.1-2 install ok installed python3-dev python3-dev 3.12.4-1 install ok installed python3-docutils python3-docutils 0.21.2+dfsg-2 install ok installed python3-edlib:amd64 python3-edlib 1.2.7-6 install ok installed python3-fonttools python3-fonttools 4.46.0-1+b1 install ok installed python3-freetype python3-freetype 2.4.0-2 install ok installed python3-fs python3-fs 2.4.16-4 install ok installed python3-gast python3-gast 0.5.2-2 install ok installed python3-idna python3-idna 3.6-2.1 install ok installed python3-imagesize python3-imagesize 1.4.1-1 install ok installed python3-importlib-metadata python3-importlib-metadata 8.2.0-1 install ok installed python3-iniconfig python3-iniconfig 1.1.1-2 install ok installed python3-jinja2 python3-jinja2 3.1.3-1 install ok installed python3-kiwisolver python3-kiwisolver 1.4.5-1+b1 install ok installed python3-lib2to3 python3-lib2to3 3.12.4-2 install ok installed python3-lxml:amd64 python3-lxml 5.2.2-1 install ok installed python3-lz4 python3-lz4 4.0.2+dfsg-1+b4 install ok installed python3-markupsafe python3-markupsafe 2.1.5-1+b1 install ok installed python3-matplotlib python3-matplotlib 3.8.3-3 install ok installed python3-minimal python3-minimal 3.12.4-1 install ok installed python3-more-itertools python3-more-itertools 10.3.0-1 install ok installed python3-mpmath python3-mpmath 1.3.0-1 install ok installed python3-numpy python3-numpy 1:1.26.4+ds-11 install ok installed python3-packaging python3-packaging 24.1-1 install ok installed python3-pandas python3-pandas 2.2.2+dfsg-4 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.2.2+dfsg-4+b1 install ok installed python3-parasail python3-parasail 1.3.3-1 install ok installed python3-pil:amd64 python3-pil 10.4.0-1 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 10.4.0-1 install ok installed python3-pkg-resources python3-pkg-resources 70.3.0-2 install ok installed python3-pluggy python3-pluggy 1.5.0-1 install ok installed python3-ply python3-ply 3.11-6 install ok installed python3-py python3-py 1.11.0-2 install ok installed python3-pychopper python3-pychopper 2.7.10-1 install ok installed python3-pygments python3-pygments 2.18.0+dfsg-1 install ok installed python3-pyparsing python3-pyparsing 3.1.2-1 install ok installed python3-pysam python3-pysam 0.22.1+ds-2+b1 install ok installed python3-pytest python3-pytest 8.3.2-1 install ok installed python3-pythran python3-pythran 0.16.1+ds-3 install ok installed python3-reportlab python3-reportlab 4.2.2-1 install ok installed python3-requests python3-requests 2.32.3+dfsg-1 install ok installed python3-rlpycairo python3-rlpycairo 0.3.0-3 install ok installed python3-roman python3-roman 3.3-3 install ok installed python3-scipy python3-scipy 1.13.1-2 install ok installed python3-seaborn python3-seaborn 0.13.2-4 install ok installed python3-setuptools python3-setuptools 70.3.0-2 install ok installed python3-six python3-six 1.16.0-7 install ok installed python3-snowballstemmer python3-snowballstemmer 2.2.0-4 install ok installed python3-sphinx python3-sphinx 7.3.7-4 install ok installed python3-sphinx-rtd-theme python3-sphinx-rtd-theme 2.0.0+dfsg-2 install ok installed python3-sphinxcontrib.jquery python3-sphinxcontrib.jquery 4.1-5 install ok installed python3-sympy python3-sympy 1.13.1-1 install ok installed python3-tk:amd64 python3-tk 3.12.4-2 install ok installed python3-toml python3-toml 0.10.2-1 install ok installed python3-tqdm python3-tqdm 4.66.4-2 install ok installed python3-tz python3-tz 2024.1-2 install ok installed python3-ufolib2 python3-ufolib2 0.16.0+dfsg1-1 install ok installed python3-unicodedata2 python3-unicodedata2 15.1.0+ds-1+b2 install ok installed python3-urllib3 python3-urllib3 2.0.7-2 install ok installed python3-wheel python3-wheel 0.43.0-1 install ok installed python3-zipp python3-zipp 3.19.2-2 install ok installed python3.11 python3.11 3.11.9-1 install ok installed python3.11-dev python3.11-dev 3.11.9-1 install ok installed python3.11-minimal python3.11-minimal 3.11.9-1 install ok installed python3.12 python3.12 3.12.4-3 install ok installed python3.12-dev python3.12-dev 3.12.4-3 install ok installed python3.12-minimal python3.12-minimal 3.12.4-3 install ok installed python3.9 python3.9 3.9.2-1 install ok installed python3.9-minimal python3.9-minimal 3.9.2-1 install ok installed readline-common readline-common 8.2-4 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sgml-base sgml-base 1.31 install ok installed sphinx-common sphinx-common 7.3.7-4 install ok installed sphinx-rtd-theme-common sphinx-rtd-theme-common 2.0.0+dfsg-2 install ok installed sysvinit-utils sysvinit-utils 3.09-2 install ok installed tar tar 1.35+dfsg-3 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-7 install ok installed ttf-bitstream-vera ttf-bitstream-vera 1.10-8.2 install ok installed tzdata tzdata 2024a-4 install ok installed ucf ucf 3.0043+nmu1 install ok installed unicode-data unicode-data 15.1.0-1 install ok installed usrmerge usrmerge 39 install ok installed util-linux util-linux 2.40.2-1 install ok installed util-linux-extra util-linux-extra 2.40.2-1 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+23.1 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.2 install ok installed xfonts-utils xfonts-utils 1:7.7+6 install ok installed xml-core xml-core 0.19 install ok installed xtl-dev xtl-dev 0.7.5-3 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg+really1.3.1-1 6m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 6m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'cpp', 'cpp-12', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'docutils-common', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-12', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-12', 'gcc-13-base:amd64', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgcc-13-dev:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhwasan0:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libjson-perl', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnsl-dev:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libparasail-dev:amd64', 'libparasail3:amd64', 'libparasail8:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.11t64:amd64', 'libpython3.12-dev:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.12t64:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-13-dev:amd64', 'libstdc++-14-dev:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtiff6:amd64', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'linux-libc-dev', 'mailcap', 'media-types', 'mime-support', 'netbase', 'openssl', 'perl-modules-5.32', 'python-babel-localedata', 'python-matplotlib-data', 'python3', 'python3-alabaster', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-attr', 'python3-babel', 'python3-beniget', 'python3-biopython', 'python3-brotli', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dev', 'python3-docutils', 'python3-edlib:amd64', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-gast', 'python3-idna', 'python3-imagesize', 'python3-importlib-metadata', 'python3-iniconfig', 'python3-jinja2', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parasail', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pluggy', 'python3-ply', 'python3-py', 'python3-pygments', 'python3-pyparsing', 'python3-pysam', 'python3-pytest', 'python3-pythran', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-roman', 'python3-scipy', 'python3-seaborn', 'python3-setuptools', 'python3-six', 'python3-snowballstemmer', 'python3-sphinx', 'python3-sphinx-rtd-theme', 'python3-sphinxcontrib.jquery', 'python3-sympy', 'python3-tk:amd64', 'python3-toml', 'python3-tqdm', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wheel', 'python3-zipp', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'python3.12', 'python3.12-dev', 'python3.12-minimal', 'python3.9', 'python3.9-minimal', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'sgml-base', 'sphinx-common', 'sphinx-rtd-theme-common', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xtl-dev', 'zlib1g-dev:amd64', 'python3-pychopper'] 7m28.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Package 'libglib2.0-0' is not installed, so not removed The following packages were automatically installed and are no longer required: gcc-12-base libperl5.36 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: binutils binutils-common binutils-x86-64-linux-gnu blt ca-certificates cpp cpp-12 cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu docutils-common fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-lyx fonts-urw-base35 g++ g++-12 g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-12 gcc-13-base gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl3t64-gnutls libdeflate0 libexpat1 libexpat1-dev libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgcc-12-dev libgcc-13-dev libgcc-14-dev libgfortran5 libglib2.0-0t64 libgomp1 libgprofng0 libgraphite2-3 libharfbuzz0b libhts3t64 libhtscodecs2 libhwasan0 libicu72 libimagequant0 libisl23 libitm1 libjansson4 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 liblsan0 libmpc3 libmpdec3 libmpfr6 libncursesw6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libnsl-dev libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libparasail-dev libparasail3 libparasail8 libperl5.32 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.11t64 libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libpython3.9-minimal libpython3.9-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsframe1 libsharpyuv0 libsqlite3-0 libssh2-1t64 libstdc++-12-dev libstdc++-13-dev libstdc++-14-dev libtcl8.6 libtiff5 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp6 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 linux-libc-dev mailcap media-types mime-support netbase openssl perl-modules-5.32 python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-all python3-all-dev python3-appdirs python3-attr python3-babel python3-beniget python3-biopython python3-brotli python3-cairo python3-certifi python3-chardet python3-charset-normalizer python3-contourpy python3-cycler python3-dateutil python3-decorator python3-defusedxml python3-dev python3-docutils python3-edlib python3-fonttools python3-freetype python3-fs python3-gast python3-idna python3-imagesize python3-importlib-metadata python3-iniconfig python3-jinja2 python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-mpmath python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-parasail python3-pil python3-pil.imagetk python3-pkg-resources python3-pluggy python3-ply python3-py python3-pychopper python3-pygments python3-pyparsing python3-pysam python3-pytest python3-pythran python3-reportlab python3-requests python3-rlpycairo python3-roman python3-scipy python3-seaborn python3-setuptools python3-six python3-snowballstemmer python3-sphinx python3-sphinx-rtd-theme python3-sphinxcontrib.jquery python3-sympy python3-tk python3-toml python3-tqdm python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-wheel python3-zipp python3.11 python3.11-dev python3.11-minimal python3.12 python3.12-dev python3.12-minimal python3.9 python3.9-minimal readline-common rpcsvc-proto sensible-utils sgml-base sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5 ttf-bitstream-vera ucf unicode-data w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core xtl-dev zlib1g-dev 0 upgraded, 0 newly installed, 267 to remove and 0 not upgraded. After this operation, 1506 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56979 files and directories currently installed.) Removing python3-pythran (0.16.1+ds-3) ... Removing g++ (4:14.1.0-2) ... Removing gcc (4:14.1.0-2) ... Removing g++-12 (12.4.0-2) ... Removing gcc-12 (12.4.0-2) ... Removing g++-x86-64-linux-gnu (4:14.1.0-2) ... Removing gcc-x86-64-linux-gnu (4:14.1.0-2) ... Removing g++-14 (14.1.0-5) ... Removing g++-14-x86-64-linux-gnu (14.1.0-5) ... Removing python3-pychopper (2.7.10-1) ... Removing python3-biopython (1.83+dfsg1-3+b1) ... Removing python3-reportlab (4.2.2-1) ... Removing python3-seaborn (0.13.2-4) ... Removing python3-matplotlib (3.8.3-3) ... Removing python3-pil.imagetk:amd64 (10.4.0-1) ... Removing python3-pil:amd64 (10.4.0-1) ... Removing python3-tk:amd64 (3.12.4-2) ... Removing blt (2.5.3+dfsg-7) ... Removing python3-sphinx-rtd-theme (2.0.0+dfsg-2) ... Removing python3-sphinxcontrib.jquery (4.1-5) ... Removing python3-sphinx (7.3.7-4) ... Removing python3-requests (2.32.3+dfsg-1) ... Removing python3-certifi (2024.6.2-1) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing cpp (4:14.1.0-2) ... Removing cpp-12 (12.4.0-2) ... Removing cpp-x86-64-linux-gnu (4:14.1.0-2) ... Removing python3-docutils (0.21.2+dfsg-2) ... Removing docutils-common (0.21.2+dfsg-2) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-7) ... Removing libtk8.6:amd64 (8.6.14-1) ... Removing libxft2:amd64 (2.3.6-1+b1) ... Removing python3-rlpycairo (0.3.0-3) ... Removing python3-cairo (1.26.1-1+b1) ... Removing libcairo2:amd64 (1.18.0-3+b1) ... Removing libfontconfig1:amd64 (2.15.0-1.1) ... Removing fontconfig-config (2.15.0-1.1) ... Removing python-matplotlib-data (3.8.3-3) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing sphinx-rtd-theme-common (2.0.0+dfsg-2) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Removing fonts-lato (2.015-1) ... Removing fonts-lyx (2.4.1-2) ... Removing fonts-urw-base35 (20200910-8) ... Removing libboost-dev:amd64 (1.83.0.2+b2) ... Removing libboost1.83-dev:amd64 (1.83.0-3+b2) ... Removing libstdc++-13-dev:amd64 (13.3.0-4) ... Removing libgcc-13-dev:amd64 (13.3.0-4) ... Removing gcc-13-base:amd64 (13.3.0-4) ... Removing libstdc++-14-dev:amd64 (14.1.0-5) ... Removing libstdc++-12-dev:amd64 (12.4.0-2) ... Removing libgcc-12-dev:amd64 (12.4.0-2) ... Removing python3-parasail (1.3.3-1) ... Removing python3-pandas (2.2.2+dfsg-4) ... Removing python3-pandas-lib:amd64 (2.2.2+dfsg-4+b1) ... Removing python3-contourpy (1.0.7-3+b1) ... Removing liblapack3:amd64 (3.12.0-3) ... Removing libblas3:amd64 (3.12.0-3) ... Removing xfonts-utils (1:7.7+6) ... Removing libraqm0:amd64 (0.10.1-1+b1) ... Removing python3-pysam (0.22.1+ds-2+b1) ... Removing libhts3t64:amd64 (1.20+ds-1) ... Removing libcurl3t64-gnutls:amd64 (8.9.1-1) ... Removing python3-all-dev (3.12.4-1) ... Removing python3-dev (3.12.4-1) ... Removing python3.12-dev (3.12.4-3) ... Removing libpython3-all-dev:amd64 (3.12.4-1) ... Removing libpython3-dev:amd64 (3.12.4-1) ... Removing libpython3.12-dev:amd64 (3.12.4-3) ... Removing python3.11-dev (3.11.9-1) ... Removing libpython3.11-dev:amd64 (3.11.9-1) ... Removing zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1) ... Removing libexpat1-dev:amd64 (2.6.2-1) ... Removing libc6-dev:amd64 (2.39-6) ... Removing libc-dev-bin (2.39-6) ... Removing libcrypt-dev:amd64 (1:4.4.36-4) ... Removing libtiff5:amd64 (4.2.0-1+deb11u5) ... Removing libtiff6:amd64 (4.5.1+git230720-4) ... Removing libdeflate0:amd64 (1.20-1) ... Removing python3.9 (3.9.2-1) ... Removing python3.9-minimal (3.9.2-1) ... Removing python3-all (3.12.4-1) ... Removing python3-lib2to3 (3.12.4-2) ... Removing python3-importlib-metadata (8.2.0-1) ... Removing libfontenc1:amd64 (1:1.1.8-1) ... Removing libfribidi0:amd64 (1.0.15-1) ... Removing libopenblas-dev:amd64 (0.3.27+ds-2) ... Removing libopenblas-pthread-dev:amd64 (0.3.27+ds-2) ... Removing libopenblas0:amd64 (0.3.27+ds-2) ... Removing libharfbuzz0b:amd64 (8.3.0-2+b1) ... Removing libglib2.0-0t64:amd64 (2.80.4-1) ... Removing libimagequant0:amd64 (2.18.0-1+b1) ... Removing libgraphite2-3:amd64 (1.3.14-2) ... Removing libhtscodecs2:amd64 (1.6.0-1+b1) ... Removing libjbig0:amd64 (2.1-6.1+b1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-3) ... Removing sphinx-common (7.3.7-4) ... Removing libjs-sphinxdoc (7.3.7-4) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Removing libjson-perl (4.10000-1) ... Removing liblcms2-2:amd64 (2.14-2+b1) ... Removing libldap-2.5-0:amd64 (2.5.18+dfsg-2) ... Removing liblerc4:amd64 (4.0.0+ds-4+b1) ... Removing libpython3.9-stdlib:amd64 (3.9.2-1) ... Removing libmpdec3:amd64 (2.5.1-1) ... Removing libpython3.12t64:amd64 (3.12.4-3) ... Removing python3.11 (3.11.9-1) ... Removing libnghttp2-14:amd64 (1.62.1-2) ... Removing libnghttp3-9:amd64 (1.4.0-1) ... Removing libngtcp2-crypto-gnutls8:amd64 (1.6.0-1) ... Removing libngtcp2-16:amd64 (1.6.0-1) ... Removing libnsl-dev:amd64 (1.3.0-3+b2) ... Removing libopenjp2-7:amd64 (2.5.0-2+b3) ... Removing libparasail-dev:amd64 (2.6.2+dfsg-1+b1) ... Removing libparasail3:amd64 (2.4.3+dfsg-2) ... Removing libparasail8:amd64 (2.6.2+dfsg-1+b1) ... Removing libperl5.32:amd64 (5.32.1-4+deb11u3) ... Removing libpixman-1-0:amd64 (0.42.2-1+b1) ... Removing libpsl5t64:amd64 (0.21.2-1.1) ... Removing python3.11-minimal (3.11.9-1) ... Removing libpython3.11t64:amd64 (3.11.9-1) ... Removing libpython3.9-minimal:amd64 (3.9.2-1) ... Removing libqhull-r8.0:amd64 (2020.2-6+b1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Removing libwebpmux3:amd64 (1.4.0-0.1) ... Removing libwebpdemux2:amd64 (1.4.0-0.1) ... Removing libwebp7:amd64 (1.4.0-0.1) ... Removing libsharpyuv0:amd64 (1.4.0-0.1) ... Removing libssh2-1t64:amd64 (1.11.0-6) ... Removing libtcl8.6:amd64 (8.6.14+dfsg-1) ... Removing libtirpc-dev:amd64 (1.3.4+ds-1.3) ... Removing libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Removing libxss1:amd64 (1:1.2.3-1+b1) ... Removing libxrender1:amd64 (1:0.9.10-1.1+b1) ... Removing libxcb-shm0:amd64 (1.17.0-2) ... Removing libxcb-render0:amd64 (1.17.0-2) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing libxsimd-dev:amd64 (13.0.0-1) ... Removing linux-libc-dev (6.9.12-1) ... Removing mime-support (3.66) ... Removing mailcap (3.72) ... Removing openssl (3.2.2-1) ... Removing perl-modules-5.32 (5.32.1-4+deb11u3) ... Removing python3-babel (2.14.0-1) ... Removing python-babel-localedata (2.14.0-1) ... Removing python3-alabaster (0.7.16-0.1) ... Removing python3-beniget (0.4.1-3) ... Removing python3-chardet (5.2.0+dfsg-1) ... Removing python3-charset-normalizer (3.3.2-1) ... Removing python3-cycler (0.12.1-1) ... Removing python3-dateutil (2.9.0-2) ... Removing python3-defusedxml (0.7.1-2) ... Removing python3-edlib:amd64 (1.2.7-6) ... Removing python3-freetype (2.4.0-2) ... Removing python3-gast (0.5.2-2) ... Removing python3-idna (3.6-2.1) ... Removing python3-imagesize (1.4.1-1) ... Removing python3-pytest (8.3.2-1) ... Removing python3-iniconfig (1.1.1-2) ... Removing python3-jinja2 (3.1.3-1) ... Removing python3-kiwisolver (1.4.5-1+b1) ... Removing python3-markupsafe (2.1.5-1+b1) ... Removing python3-more-itertools (10.3.0-1) ... Removing python3-packaging (24.1-1) ... Removing python3-setuptools (70.3.0-2) ... Removing python3-py (1.11.0-2) ... Removing python3-pluggy (1.5.0-1) ... Removing python3-ply (3.11-6) ... Removing python3-pygments (2.18.0+dfsg-1) ... Removing python3-pyparsing (3.1.2-1) ... Removing python3-roman (3.3-3) ... Removing python3-snowballstemmer (2.2.0-4) ... Removing python3-toml (0.10.2-1) ... Removing python3-tqdm (4.66.4-2) ... Removing python3-urllib3 (2.0.7-2) ... Removing python3-wheel (0.43.0-1) ... Removing python3-zipp (3.19.2-2) ... Removing rpcsvc-proto (1.4.3-1) ... Removing ucf (3.0043+nmu1) ... Removing sensible-utils (0.0.24) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.19) ... Removing sgml-base (1.31) ... Removing ttf-bitstream-vera (1.10-8.2) ... Removing xfonts-encodings (1:1.0.4-2.2) ... Removing x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xtl-dev (0.7.5-3) ... Removing gcc-14 (14.1.0-5) ... Removing binutils (2.42.90.20240720-2) ... Removing gcc-14-x86-64-linux-gnu (14.1.0-5) ... Removing binutils-x86-64-linux-gnu (2.42.90.20240720-2) ... Removing libgprofng0:amd64 (2.42.90.20240720-2) ... Removing libctf0:amd64 (2.42.90.20240720-2) ... Removing libbinutils:amd64 (2.42.90.20240720-2) ... Removing binutils-common:amd64 (2.42.90.20240720-2) ... Removing cpp-14 (14.1.0-5) ... Removing cpp-14-x86-64-linux-gnu (14.1.0-5) ... Removing libgcc-14-dev:amd64 (14.1.0-5) ... Removing libasan8:amd64 (14.1.0-5) ... Removing libatomic1:amd64 (14.1.0-5) ... Removing libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Removing libbrotli1:amd64 (1.1.0-2+b4) ... Removing libcc1-0:amd64 (14.1.0-5) ... Removing libctf-nobfd0:amd64 (2.42.90.20240720-2) ... Removing libgomp1:amd64 (14.1.0-5) ... Removing libhwasan0:amd64 (14.1.0-5) ... Removing libisl23:amd64 (0.26-3+b2) ... Removing libitm1:amd64 (14.1.0-5) ... Removing libjansson4:amd64 (2.14-2+b2) ... Removing liblsan0:amd64 (14.1.0-5) ... Removing libmpc3:amd64 (1.3.1-1+b2) ... Removing libmpfr6:amd64 (4.2.1-1+b1) ... Removing libpython3.11-stdlib:amd64 (3.11.9-1) ... Removing libpng16-16t64:amd64 (1.6.43-5) ... Removing libpython3.11-minimal:amd64 (3.11.9-1) ... Removing libquadmath0:amd64 (14.1.0-5) ... Removing libsframe1:amd64 (2.42.90.20240720-2) ... Removing libtsan2:amd64 (14.1.0-5) ... Removing libubsan1:amd64 (14.1.0-5) ... Removing libx11-6:amd64 (2:1.8.7-1+b1) ... Removing libx11-data (2:1.8.7-1) ... Removing libxcb1:amd64 (1.17.0-2) ... Removing libxau6:amd64 (1:1.0.9-1+b1) ... Removing libxdmcp6:amd64 (1:1.1.2-3+b1) ... Removing python3-ufolib2 (0.16.0+dfsg1-1) ... Removing python3-attr (23.2.0-2) ... Removing python3-fonttools (4.46.0-1+b1) ... Removing python3-scipy (1.13.1-2) ... Removing python3-numpy (1:1.26.4+ds-11) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Removing libopenblas0-pthread:amd64 (0.3.27+ds-2) ... Removing libgfortran5:amd64 (14.1.0-5) ... Removing python3-lxml:amd64 (5.2.2-1) ... Removing libxslt1.1:amd64 (1.1.35-1.1) ... Removing libxml2:amd64 (2.12.7+dfsg-3+b1) ... Removing libicu72:amd64 (72.1-5) ... Removing python3-fs (2.4.16-4) ... Removing python3-appdirs (1.4.4-4) ... Removing python3-brotli (1.1.0-2+b4) ... Removing python3-decorator (5.1.1-5) ... Removing python3-lz4 (4.0.2+dfsg-1+b4) ... Removing python3-sympy (1.13.1-1) ... Removing python3-mpmath (1.3.0-1) ... Removing python3-pkg-resources (70.3.0-2) ... Removing python3-six (1.16.0-7) ... Removing python3-tz (2024.1-2) ... Removing python3-unicodedata2 (15.1.0+ds-1+b2) ... Removing unicode-data (15.1.0-1) ... Removing python3 (3.12.4-1) ... Removing python3.12 (3.12.4-3) ... Removing libpython3-stdlib:amd64 (3.12.4-1) ... Removing python3-minimal (3.12.4-1) ... Removing python3.12-minimal (3.12.4-3) ... Removing libexpat1:amd64 (2.6.2-1) ... Removing libpython3.12-stdlib:amd64 (3.12.4-3) ... find: '/usr/lib/python3': No such file or directory Removing libncursesw6:amd64 (6.5-2) ... Removing libpython3.12-minimal:amd64 (3.12.4-3) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.46.0-1) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-4) ... Processing triggers for libc-bin (2.39-6) ... 7m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'cpp', 'cpp-12', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'docutils-common', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'fonts-urw-base35', 'g++-', 'g++-12', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-12', 'gcc-13-base:amd64', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgcc-13-dev:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhwasan0:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libjson-perl', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnsl-dev:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libparasail-dev:amd64', 'libparasail3:amd64', 'libparasail8:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.11t64:amd64', 'libpython3.12-dev:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.12t64:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-13-dev:amd64', 'libstdc++-14-dev:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtiff6:amd64', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'linux-libc-dev', 'mailcap', 'media-types', 'mime-support', 'netbase', 'openssl', 'perl-modules-5.32', 'python-babel-localedata', 'python-matplotlib-data', 'python3', 'python3-alabaster', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-attr', 'python3-babel', 'python3-beniget', 'python3-biopython', 'python3-brotli', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dev', 'python3-docutils', 'python3-edlib:amd64', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-gast', 'python3-idna', 'python3-imagesize', 'python3-importlib-metadata', 'python3-iniconfig', 'python3-jinja2', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parasail', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pluggy', 'python3-ply', 'python3-py', 'python3-pygments', 'python3-pyparsing', 'python3-pysam', 'python3-pytest', 'python3-pythran', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-roman', 'python3-scipy', 'python3-seaborn', 'python3-setuptools', 'python3-six', 'python3-snowballstemmer', 'python3-sphinx', 'python3-sphinx-rtd-theme', 'python3-sphinxcontrib.jquery', 'python3-sympy', 'python3-tk:amd64', 'python3-toml', 'python3-tqdm', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wheel', 'python3-zipp', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'python3.12', 'python3.12-dev', 'python3.12-minimal', 'python3.9', 'python3.9-minimal', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'sgml-base', 'sphinx-common', 'sphinx-rtd-theme-common', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xtl-dev', 'zlib1g-dev:amd64', 'python3-pychopper'] 7m28.0s INFO: Running scripts post_remove 7m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_remove_exceptions'] 7m28.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_remove_exceptions'] 7m28.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'cpp', 'cpp-12', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'docutils-common', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-12', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-12', 'gcc-13-base:amd64', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgcc-13-dev:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhwasan0:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libjson-perl', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnsl-dev:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libparasail-dev:amd64', 'libparasail3:amd64', 'libparasail8:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.11t64:amd64', 'libpython3.12-dev:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.12t64:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-13-dev:amd64', 'libstdc++-14-dev:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtiff6:amd64', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'linux-libc-dev', 'mailcap', 'media-types', 'mime-support', 'netbase', 'openssl', 'perl-modules-5.32', 'python-babel-localedata', 'python-matplotlib-data', 'python3', 'python3-alabaster', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-attr', 'python3-babel', 'python3-beniget', 'python3-biopython', 'python3-brotli', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dev', 'python3-docutils', 'python3-edlib:amd64', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-gast', 'python3-idna', 'python3-imagesize', 'python3-importlib-metadata', 'python3-iniconfig', 'python3-jinja2', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parasail', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pluggy', 'python3-ply', 'python3-py', 'python3-pygments', 'python3-pyparsing', 'python3-pysam', 'python3-pytest', 'python3-pythran', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-roman', 'python3-scipy', 'python3-seaborn', 'python3-setuptools', 'python3-six', 'python3-snowballstemmer', 'python3-sphinx', 'python3-sphinx-rtd-theme', 'python3-sphinxcontrib.jquery', 'python3-sympy', 'python3-tk:amd64', 'python3-toml', 'python3-tqdm', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wheel', 'python3-zipp', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'python3.12', 'python3.12-dev', 'python3.12-minimal', 'python3.9', 'python3.9-minimal', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'sgml-base', 'sphinx-common', 'sphinx-rtd-theme-common', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xtl-dev', 'zlib1g-dev:amd64'] 7m29.0s DUMP: dpkg: warning: ignoring request to remove binutils which isn't installed (Reading database ... 9480 files and directories currently installed.) Purging configuration files for binutils-common:amd64 (2.42.90.20240720-2) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove blt which isn't installed Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for cpp (4:14.1.0-2) ... dpkg: warning: ignoring request to remove cpp-12 which isn't installed dpkg: warning: ignoring request to remove cpp-14 which isn't installed dpkg: warning: ignoring request to remove cpp-14-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove cpp-x86-64-linux-gnu which isn't installed Purging configuration files for docutils-common (0.21.2+dfsg-2) ... Purging configuration files for fontconfig-config (2.15.0-1.1) ... dpkg: warning: while removing fontconfig-config, directory '/etc/fonts/conf.d' not empty so not removed Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... dpkg: warning: while removing fonts-dejavu-mono, directory '/etc/fonts' not empty so not removed Purging configuration files for fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... dpkg: warning: ignoring request to remove fonts-lato which isn't installed dpkg: warning: ignoring request to remove fonts-lyx which isn't installed Purging configuration files for fonts-urw-base35 (20200910-8) ... dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-12 which isn't installed dpkg: warning: ignoring request to remove g++-14 which isn't installed dpkg: warning: ignoring request to remove g++-14-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove g++-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-12 which isn't installed dpkg: warning: ignoring request to remove gcc-13-base which isn't installed dpkg: warning: ignoring request to remove gcc-14 which isn't installed dpkg: warning: ignoring request to remove gcc-14-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove gcc-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libboost-dev which isn't installed dpkg: warning: ignoring request to remove libboost1.83-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.36-4) ... dpkg: warning: ignoring request to remove libctf-nobfd0 which isn't installed dpkg: warning: ignoring request to remove libctf0 which isn't installed dpkg: warning: ignoring request to remove libcurl3t64-gnutls which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgcc-12-dev which isn't installed dpkg: warning: ignoring request to remove libgcc-13-dev which isn't installed dpkg: warning: ignoring request to remove libgcc-14-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0t64:amd64 (2.80.4-1) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgprofng0 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhts3t64 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove libhwasan0 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libisl23 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjansson4 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-jquery-ui which isn't installed dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libjson-perl which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnghttp3-9 which isn't installed dpkg: warning: ignoring request to remove libngtcp2-16 which isn't installed dpkg: warning: ignoring request to remove libngtcp2-crypto-gnutls8 which isn't installed dpkg: warning: ignoring request to remove libnsl-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas-pthread-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas0 which isn't installed dpkg: warning: ignoring request to remove libopenblas0-pthread which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libparasail-dev which isn't installed dpkg: warning: ignoring request to remove libparasail3 which isn't installed dpkg: warning: ignoring request to remove libparasail8 which isn't installed dpkg: warning: ignoring request to remove libperl5.32 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-all-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11-dev which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.9-1) ... dpkg: warning: while removing libpython3.11-minimal:amd64, directory '/usr/lib/python3.11' not empty so not removed dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11t64 which isn't installed dpkg: warning: ignoring request to remove libpython3.12-dev which isn't installed Purging configuration files for libpython3.12-minimal:amd64 (3.12.4-3) ... dpkg: warning: ignoring request to remove libpython3.12-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.12t64 which isn't installed Purging configuration files for libpython3.9-minimal:amd64 (3.9.2-1) ... dpkg: warning: ignoring request to remove libpython3.9-stdlib which isn't installed dpkg: warning: ignoring request to remove libqhull-r8.0 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-4) ... dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsframe1 which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed dpkg: warning: ignoring request to remove libstdc++-12-dev which isn't installed dpkg: warning: ignoring request to remove libstdc++-13-dev which isn't installed dpkg: warning: ignoring request to remove libstdc++-14-dev which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed dpkg: warning: ignoring request to remove libtirpc-dev which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxsimd-dev which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed Purging configuration files for mailcap (3.72) ... Purging configuration files for media-types (10.1.0) ... dpkg: warning: ignoring request to remove mime-support which isn't installed Purging configuration files for netbase (6.4) ... Purging configuration files for openssl (3.2.2-1) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed dpkg: warning: ignoring request to remove python-babel-localedata which isn't installed Purging configuration files for python-matplotlib-data (3.8.3-3) ... Purging configuration files for python3 (3.12.4-1) ... dpkg: warning: ignoring request to remove python3-alabaster which isn't installed dpkg: warning: ignoring request to remove python3-all which isn't installed dpkg: warning: ignoring request to remove python3-all-dev which isn't installed dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-babel which isn't installed dpkg: warning: ignoring request to remove python3-beniget which isn't installed dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-brotli which isn't installed dpkg: warning: ignoring request to remove python3-cairo which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-contourpy which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-defusedxml which isn't installed dpkg: warning: ignoring request to remove python3-dev which isn't installed dpkg: warning: ignoring request to remove python3-docutils which isn't installed dpkg: warning: ignoring request to remove python3-edlib which isn't installed dpkg: warning: ignoring request to remove python3-fonttools which isn't installed dpkg: warning: ignoring request to remove python3-freetype which isn't installed dpkg: warning: ignoring request to remove python3-fs which isn't installed dpkg: warning: ignoring request to remove python3-gast which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-imagesize which isn't installed dpkg: warning: ignoring request to remove python3-importlib-metadata which isn't installed dpkg: warning: ignoring request to remove python3-iniconfig which isn't installed dpkg: warning: ignoring request to remove python3-jinja2 which isn't installed dpkg: warning: ignoring request to remove python3-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-lz4 which isn't installed dpkg: warning: ignoring request to remove python3-markupsafe which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-mpmath which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-parasail which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pil.imagetk which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-pluggy which isn't installed dpkg: warning: ignoring request to remove python3-ply which isn't installed dpkg: warning: ignoring request to remove python3-py which isn't installed dpkg: warning: ignoring request to remove python3-pygments which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pysam which isn't installed dpkg: warning: ignoring request to remove python3-pytest which isn't installed dpkg: warning: ignoring request to remove python3-pythran which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-rlpycairo which isn't installed dpkg: warning: ignoring request to remove python3-roman which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-seaborn which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-snowballstemmer which isn't installed dpkg: warning: ignoring request to remove python3-sphinx which isn't installed dpkg: warning: ignoring request to remove python3-sphinx-rtd-theme which isn't installed dpkg: warning: ignoring request to remove python3-sphinxcontrib.jquery which isn't installed Purging configuration files for python3-sympy (1.13.1-1) ... dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-toml which isn't installed dpkg: warning: ignoring request to remove python3-tqdm which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-ufolib2 which isn't installed dpkg: warning: ignoring request to remove python3-unicodedata2 which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-wheel which isn't installed dpkg: warning: ignoring request to remove python3-zipp which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed dpkg: warning: ignoring request to remove python3.11-dev which isn't installed Purging configuration files for python3.11-minimal (3.11.9-1) ... dpkg: warning: ignoring request to remove python3.12 which isn't installed dpkg: warning: ignoring request to remove python3.12-dev which isn't installed Purging configuration files for python3.12-minimal (3.12.4-3) ... dpkg: warning: ignoring request to remove python3.9 which isn't installed Purging configuration files for python3.9-minimal (3.9.2-1) ... Purging configuration files for readline-common (8.2-4) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for sgml-base (1.31) ... dpkg: warning: ignoring request to remove sphinx-common which isn't installed dpkg: warning: ignoring request to remove sphinx-rtd-theme-common which isn't installed dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed dpkg: warning: ignoring request to remove ttf-bitstream-vera which isn't installed Purging configuration files for ucf (3.0043+nmu1) ... dpkg: warning: ignoring request to remove unicode-data which isn't installed Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+23.1) ... dpkg: warning: while removing x11-common, directory '/etc/init.d' not empty so not removed dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+6) ... Purging configuration files for xml-core (0.19) ... dpkg: warning: ignoring request to remove xtl-dev which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 7m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'blt', 'ca-certificates', 'cpp', 'cpp-12', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'docutils-common', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-lato', 'fonts-lyx', 'fonts-urw-base35', 'g++', 'g++-12', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-12', 'gcc-13-base:amd64', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-12-dev:amd64', 'libgcc-13-dev:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libhwasan0:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-sphinxdoc', 'libjs-underscore', 'libjson-perl', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'libmpc3:amd64', 'libmpdec3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp3-9:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libnsl-dev:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libparasail-dev:amd64', 'libparasail3:amd64', 'libparasail8:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.11t64:amd64', 'libpython3.12-dev:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.12t64:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe1:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-13-dev:amd64', 'libstdc++-14-dev:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtiff6:amd64', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libwebp6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxsimd-dev:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'linux-libc-dev', 'mailcap', 'media-types', 'mime-support', 'netbase', 'openssl', 'perl-modules-5.32', 'python-babel-localedata', 'python-matplotlib-data', 'python3', 'python3-alabaster', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-attr', 'python3-babel', 'python3-beniget', 'python3-biopython', 'python3-brotli', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-defusedxml', 'python3-dev', 'python3-docutils', 'python3-edlib:amd64', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-gast', 'python3-idna', 'python3-imagesize', 'python3-importlib-metadata', 'python3-iniconfig', 'python3-jinja2', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parasail', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pluggy', 'python3-ply', 'python3-py', 'python3-pygments', 'python3-pyparsing', 'python3-pysam', 'python3-pytest', 'python3-pythran', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-roman', 'python3-scipy', 'python3-seaborn', 'python3-setuptools', 'python3-six', 'python3-snowballstemmer', 'python3-sphinx', 'python3-sphinx-rtd-theme', 'python3-sphinxcontrib.jquery', 'python3-sympy', 'python3-tk:amd64', 'python3-toml', 'python3-tqdm', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wheel', 'python3-zipp', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'python3.12', 'python3.12-dev', 'python3.12-minimal', 'python3.9', 'python3.9-minimal', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'sgml-base', 'sphinx-common', 'sphinx-rtd-theme-common', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'unicode-data', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'xtl-dev', 'zlib1g-dev:amd64'] 7m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'dpkg', '--purge', 'python3-pychopper'] 7m29.0s DUMP: dpkg: warning: ignoring request to remove python3-pychopper which isn't installed 7m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'dpkg', '--purge', 'python3-pychopper'] 7m29.0s INFO: Running scripts post_purge 7m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_purge_exceptions'] 7m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_purge_exceptions'] 7m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'dpkg', '--purge', '--pending'] 7m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'dpkg', '--purge', '--pending'] 7m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'dpkg', '--remove', '--pending'] 7m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'dpkg', '--remove', '--pending'] 7m29.0s INFO: Running scripts post_test 7m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_test_exceptions'] 7m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'tmp/scripts/post_test_exceptions'] 7m29.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2ehoday'] 7m29.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmph2ehoday'] 7m29.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'dpkg-divert', '--list'] 7m29.4s DUMP: diversion of /sbin/mkfs.bfs to /sbin/mkfs.bfs.usr-is-merged by util-linux-extra diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /sbin/mkfs.minix to /sbin/mkfs.minix.usr-is-merged by util-linux-extra diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 diversion of /sbin/mkfs.cramfs to /sbin/mkfs.cramfs.usr-is-merged by util-linux-extra local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /sbin/ctrlaltdel to /sbin/ctrlaltdel.usr-is-merged by util-linux-extra diversion of /sbin/fsck.minix to /sbin/fsck.minix.usr-is-merged by util-linux-extra diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64 diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64 diversion of /sbin/fsck.cramfs to /sbin/fsck.cramfs.usr-is-merged by util-linux-extra 7m29.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'dpkg-divert', '--list'] 7m29.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-get', 'clean'] 7m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmph2ehoday', 'apt-get', 'clean'] 7m29.6s DEBUG: Recording chroot state 7m30.1s INFO: Warning: Package purging left files on system: /etc/fonts/ owned by: fontconfig-config, fonts-urw-base35, fonts-dejavu-mono, fonts-dejavu-core /etc/fonts/conf.d/ owned by: fontconfig-config, fonts-urw-base35, fonts-dejavu-mono, fonts-dejavu-core /etc/fonts/conf.d/70-no-bitmaps-except-emoji.conf -> /usr/share/fontconfig/conf.avail/70-no-bitmaps-except-emoji.conf not owned /usr/lib/python3.11/ owned by: libpython3.11-minimal:amd64, libpython3.11-stdlib:amd64, python3.11, libpython3.11t64:amd64, libpython3.11-dev:amd64 /usr/lib/python3.11/tkinter/ not owned /usr/lib/python3.11/tkinter/__pycache__/ not owned /usr/lib/python3.11/tkinter/__pycache__/__init__.cpython-311.pyc not owned /usr/lib/python3.11/tkinter/__pycache__/__main__.cpython-311.pyc not owned /usr/lib/python3.11/tkinter/__pycache__/colorchooser.cpython-311.pyc not owned /usr/lib/python3.11/tkinter/__pycache__/commondialog.cpython-311.pyc not owned /usr/lib/python3.11/tkinter/__pycache__/constants.cpython-311.pyc not owned /usr/lib/python3.11/tkinter/__pycache__/dialog.cpython-311.pyc not owned /usr/lib/python3.11/tkinter/__pycache__/dnd.cpython-311.pyc not owned /usr/lib/python3.11/tkinter/__pycache__/filedialog.cpython-311.pyc not owned /usr/lib/python3.11/tkinter/__pycache__/font.cpython-311.pyc not owned /usr/lib/python3.11/tkinter/__pycache__/messagebox.cpython-311.pyc not owned /usr/lib/python3.11/tkinter/__pycache__/scrolledtext.cpython-311.pyc not owned /usr/lib/python3.11/tkinter/__pycache__/simpledialog.cpython-311.pyc not owned /usr/lib/python3.11/tkinter/__pycache__/tix.cpython-311.pyc not owned /usr/lib/python3.11/tkinter/__pycache__/ttk.cpython-311.pyc not owned 7m30.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph2ehoday/dev/shm'] 7m30.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph2ehoday/dev/shm'] 7m30.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph2ehoday/dev/console'] 7m30.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph2ehoday/dev/console'] 7m30.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph2ehoday/dev/ptmx'] 7m30.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph2ehoday/dev/ptmx'] 7m30.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph2ehoday/dev/pts'] 7m30.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph2ehoday/dev/pts'] 7m30.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmph2ehoday/proc'] 7m30.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmph2ehoday/proc'] 7m30.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmph2ehoday'] 7m30.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmph2ehoday'] 7m30.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmph2ehoday 7m30.8s INFO: PASS: Upgrading between Debian distributions. 7m30.8s INFO: PASS: All tests. 7m30.8s INFO: piuparts run ends. ret=0 End: 2024-07-31 23:01:55 GMT