Start: 2026-10-19 04:01:25 GMT [stable] Package: r-bioc-gsva Version: 2.0.5+ds-1 Installed-Size: 1508 Maintainer: Debian R Packages Maintainers Architecture: amd64 Depends: r-api-4.0, r-api-bioc-3.20, r-bioc-s4vectors, r-bioc-iranges, r-bioc-biobase, r-bioc-summarizedexperiment, r-bioc-gseabase, r-cran-matrix (>= 1.5-0), r-bioc-biocparallel, r-bioc-singlecellexperiment, r-bioc-spatialexperiment, r-bioc-sparsematrixstats, r-bioc-delayedarray, r-bioc-delayedmatrixstats, r-bioc-hdf5array, r-bioc-biocsingular, r-cran-cli, libc6 (>= 2.14) Suggests: r-bioc-biocgenerics, r-cran-runit, r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown, r-bioc-limma, r-cran-rcolorbrewer, r-bioc-org.hs.eg.db, r-bioc-genefilter, r-bioc-edger, r-bioc-gsvadata, r-cran-shiny, r-cran-shinydashboard, r-cran-ggplot2, r-cran-data.table, r-cran-plotly, r-cran-future, r-cran-promises, r-cran-shinyjs Description: Gene Set Variation Analysis for microarray and RNA-seq data Homepage: https://bioconductor.org/packages/GSVA/ Description-md5: e85ed23c3444b7c2da17d6196437f0f4 Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-gsva/r-bioc-gsva_2.0.5+ds-1_amd64.deb Size: 1251220 MD5sum: e40a094e1549ed0d65d57b31fc7be527 SHA256: 6255c7c3c113358c8e25d2193ce5be775be757a58b0de6284f4d5afbc8bbabc7 [testing] [sid] Package: r-bioc-gsva Version: 2.6.12+dfsg-1 Installed-Size: 7463 Maintainer: Debian R Packages Maintainers Architecture: amd64 Depends: r-pkg-team-core-architecture, r-api-4.0, r-api-bioc-3.23, r-bioc-biocgenerics, r-bioc-matrixgenerics, r-bioc-s4vectors, r-bioc-s4arrays, r-bioc-hdf5array, r-bioc-sparsearray, r-bioc-delayedarray, r-bioc-iranges, r-bioc-biobase, r-bioc-summarizedexperiment, r-bioc-gseabase, r-cran-matrix (>= 1.5-0), r-bioc-delayedmatrixstats, r-bioc-biocparallel, r-bioc-singlecellexperiment, r-bioc-spatialexperiment, r-bioc-sparsematrixstats, r-cran-cli, r-cran-memuse, libc6 (>= 2.4) Description: Gene Set Variation Analysis for Microarray and RNA-Seq Data Homepage: https://bioconductor.org/packages/GSVA/ Description-md5: 3da7e33cee269ad5132ade65e324473d Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-gsva/r-bioc-gsva_2.6.12+dfsg-1_amd64.deb Size: 3762712 MD5sum: 41e175152a22b0ede020dc9ff278d4d7 SHA256: 44e65836b82657e45a4d947403a1b817bfaba33b22d76b3b2ed60bc54bd12f8d Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat --apt r-bioc-gsva=2.6.12+dfsg-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202608291513~1.6.0-23-g1172a6e5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat --apt r-bioc-gsva=2.6.12+dfsg-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.12.113+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.113-1 (2026-10-15) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpveszhioq 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpveszhioq 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpveszhioq', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpveszhioq', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpveszhioq/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpveszhioq/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpveszhioq/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpveszhioq/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpveszhioq/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpveszhioq/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpveszhioq/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpveszhioq/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/12', '/srv/piuparts.debian.org/tmp/tmpveszhioq/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/12', '/srv/piuparts.debian.org/tmp/tmpveszhioq/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpveszhioq/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpveszhioq/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpveszhioq/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-get', 'update'] 0m1.3s DUMP: Hit:1 http://deb.debian.org/debian trixie InRelease Reading package lists... 0m1.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-get', 'update'] 0m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-get', '-yf', 'dist-upgrade'] 0m2.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-get', '-yf', 'dist-upgrade'] 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.9s DUMP: 07cefd96e238a501209b5d81fcdf114c - 0m2.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.9s INFO: Running scripts post_setup 0m2.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_setup_dummy_users'] 0m3.5s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_setup_dummy_users'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_setup_forbid_home'] 0m3.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_setup_forbid_home'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_setup_minimize'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_setup_minimize'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_setup_zz_backports'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_setup_zz_backports'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.6s DUMP: install ok installed apt apt 3.0.3 install ok installed base-files base-files 13.8+deb13u7 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2+b10 install ok installed bsdutils bsdutils 1:2.41.5-0+deb13u1 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.22 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1+deb13u1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69~deb13u1 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.3 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2+deb13u1 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+deb13u1 install ok installed libblkid1:amd64 libblkid1 2.41.5-0+deb13u1 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12+deb13u4 install ok installed libc6:amd64 libc6 2.41-12+deb13u4 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+deb13u1+b3 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.5-0+deb13u1 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1+deb13u1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.5-0+deb13u1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1~deb13u2 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.5-0+deb13u1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-7+deb13u2 install ok installed libssl3t64:amd64 libssl3t64 3.5.7-1~deb13u2 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.13-1~deb13u1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.13-1~deb13u1 install ok installed libuuid1:amd64 libuuid1 2.41.5-0+deb13u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.41.5-0+deb13u1 install ok installed login.defs login.defs 1:4.17.4-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41.5-0+deb13u1 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.7-1~deb13u2 install ok installed passwd passwd 1:4.17.4-2 install ok installed perl-base perl-base 5.40.1-6+deb13u1 install ok installed sed sed 4.9-2+deb13u1 install ok installed sqv sqv 1.3.0-3+b2 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2026c-0+deb13u1 install ok installed util-linux util-linux 2.41.5-0+deb13u1 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.6s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat 0m3.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpveszhioq'] 0m3.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpveszhioq'] 0m3.9s INFO: Running scripts is_testable 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/is_testable_uninstallable'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/is_testable_uninstallable'] 0m3.9s INFO: Running scripts pre_test 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_test_exceptions'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_test_exceptions'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_test_root_password'] 0m4.0s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_test_root_password'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-gsva'] 0m4.3s DUMP: Package: r-bioc-gsva Version: 2.0.5+ds-1 Installed-Size: 1508 Maintainer: Debian R Packages Maintainers Architecture: amd64 Depends: r-api-4.0, r-api-bioc-3.20, r-bioc-s4vectors, r-bioc-iranges, r-bioc-biobase, r-bioc-summarizedexperiment, r-bioc-gseabase, r-cran-matrix (>= 1.5-0), r-bioc-biocparallel, r-bioc-singlecellexperiment, r-bioc-spatialexperiment, r-bioc-sparsematrixstats, r-bioc-delayedarray, r-bioc-delayedmatrixstats, r-bioc-hdf5array, r-bioc-biocsingular, r-cran-cli, libc6 (>= 2.14) Suggests: r-bioc-biocgenerics, r-cran-runit, r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown, r-bioc-limma, r-cran-rcolorbrewer, r-bioc-org.hs.eg.db, r-bioc-genefilter, r-bioc-edger, r-bioc-gsvadata, r-cran-shiny, r-cran-shinydashboard, r-cran-ggplot2, r-cran-data.table, r-cran-plotly, r-cran-future, r-cran-promises, r-cran-shinyjs Description-en: Gene Set Variation Analysis for microarray and RNA-seq data Gene Set Variation Analysis (GSVA) is a non-parametric, unsupervised method for estimating variation of gene set enrichment through the samples of a expression data set. GSVA performs a change in coordinate systems, transforming the data from a gene by sample matrix to a gene- set by sample matrix, thereby allowing the evaluation of pathway enrichment for each sample. This new matrix of GSVA enrichment scores facilitates applying standard analytical methods like functional enrichment, survival analysis, clustering, CNV-pathway analysis or cross- tissue pathway analysis, in a pathway-centric manner. Description-md5: e85ed23c3444b7c2da17d6196437f0f4 Homepage: https://bioconductor.org/packages/GSVA/ Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-gsva/r-bioc-gsva_2.0.5+ds-1_amd64.deb Size: 1251220 MD5sum: e40a094e1549ed0d65d57b31fc7be527 SHA256: 6255c7c3c113358c8e25d2193ce5be775be757a58b0de6284f4d5afbc8bbabc7 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-gsva'] 0m4.3s INFO: apt-cache knows about the following packages: r-bioc-gsva 0m4.3s INFO: Running scripts pre_install 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_database-server'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_database-server'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_exceptions'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_exceptions'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_extras'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_extras'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-cache', 'policy'] 0m4.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release v=13.7,o=Debian,a=stable,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-cache', 'policy'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-cache', 'policy', 'r-bioc-gsva'] 0m4.4s DUMP: r-bioc-gsva: Installed: (none) Candidate: 2.0.5+ds-1 Version table: 2.0.5+ds-1 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-cache', 'policy', 'r-bioc-gsva'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-get', '-y', 'install', 'r-bioc-gsva'] 0m28.1s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ca-certificates comerr-dev fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono hdf5-helpers imagemagick-7-common krb5-multidev libaec-dev libaec0 libasan8 libatomic1 libblas3 libblosc1 libboost-dev libboost1.83-dev libbrotli-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2 libcrypt-dev libcurl4-openssl-dev libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libevent-2.1-7t64 libexpat1 libffi8 libfftw3-double3 libfontconfig1 libfreetype6 libfribidi0 libgcc-14-dev libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libharfbuzz0b libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310 libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhnswlib-dev libhwasan0 libice6 libicu76 libidn2-0 libidn2-dev libitm1 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 liblapack3 liblcms2-2 libldap-dev libldap2 liblerc4 liblqr-1-0 liblsan0 libltdl7 libmagick++-7.q16-5 libmagickcore-7.q16-10 libmagickwand-7.q16-10 libncursesw6 libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libopenjp2-7 libp11-kit-dev libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpkgconf3 libpng16-16t64 libproc2-0 libpsl-dev libpsl5t64 libquadmath0 libraw23t64 libreadline8t64 librtmp-dev librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsnappy1v5 libssh2-1-dev libssh2-1t64 libssl-dev libstdc++-14-dev libsz2 libtasn1-6 libtasn1-6-dev libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunbound8 libunistring5 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6t64 libzstd-dev linux-libc-dev littler nettle-dev openssl pkgconf pkgconf-bin procps r-base-core r-bioc-annotate r-bioc-annotationdbi r-bioc-assorthead r-bioc-beachmat r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biocsingular r-bioc-biostrings r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-graph r-bioc-gseabase r-bioc-hdf5array r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-scaledmatrix r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-spatialexperiment r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-dplyr r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-httr r-cran-irlba r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magick r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-purrr r-cran-r6 r-cran-rcpp r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-rsvd r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xml r-cran-xtable readline-common rpcsvc-proto sensible-utils ucf unzip x11-common xdg-utils zip zlib1g-dev Suggested packages: doc-base krb5-doc libboost-doc libboost1.83-doc libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev libboost-contract1.83-dev libboost-coroutine1.83-dev libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev libboost-numpy1.83-dev libboost-program-options1.83-dev libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev libboost-serialization1.83-dev libboost-stacktrace1.83-dev libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev libc-devtools glibc-doc manpages-dev dpkg-dev libcurl4-doc libidn-dev libfftw3-bin libfftw3-dev low-memory-monitor gmp-doc libgmp10-doc libmpfr-dev dns-root-data gnutls-bin gnutls-doc krb5-user libhdf5-doc libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc liblcms2-utils libmagickcore-7.q16-10-extra libnghttp2-doc p11-kit-doc libssl-doc libstdc++-14-doc tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-bioc-genefilter r-bioc-go.db r-bioc-org.hs.eg.db r-cran-runit r-bioc-biocstyle r-cran-knitr r-cran-rmarkdown r-cran-testthat r-cran-rcmdcheck r-bioc-all r-bioc-golubesets r-bioc-limma r-bioc-rtracklayer r-bioc-pwalign r-bioc-rsamtools r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-bbmisc r-cran-doparallel r-bioc-variantannotation r-bioc-genomicalignments r-bioc-shortread r-cran-batchtools r-cran-data.table r-bioc-residualmatrix r-bioc-bsgenome r-bioc-genomicfeatures r-cran-covr r-cran-lobstr r-cran-microbenchmark r-cran-profmem r-cran-r.utils r-bioc-txdbmaker r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq r-bioc-edger r-cran-digest r-cran-sparsem r-bioc-rbgl r-cran-cluster r-cran-rcolorbrewer r-bioc-gsvadata r-cran-shiny r-cran-shinydashboard r-cran-ggplot2 r-cran-plotly r-cran-future r-cran-promises r-cran-shinyjs r-bioc-experimenthub r-cran-markdown r-cran-bench r-cran-mockery r-cran-tinytest r-bioc-scrnaseq r-cran-rtsne r-bioc-dropletutils r-cran-rmariadb r-cran-rmysql r-cran-getopt r-cran-inline r-cran-rmpi r-cran-rlecuyer r-cran-plm r-cran-zoo r-cran-survival readline-doc Recommended packages: manpages manpages-dev libglib2.0-data shared-mime-info xdg-user-dirs libheif-plugin-x265 libheif-plugin-aomenc krb5-locales libldap-common ghostscript fonts-urw-base35 libgpm2 publicsuffix libsasl2-modules libtasn1-doc psmisc linux-sysctl-defaults r-recommended r-base-dev r-doc-html r-cran-testthat r-cran-roxygen2 r-cran-knitr r-cran-markdown r-cran-rmarkdown r-cran-ff r-cran-microbenchmark r-cran-callr r-cran-covr r-cran-digest r-cran-htmltools r-cran-htmlwidgets r-cran-processx r-cran-ps r-cran-rprojroot r-cran-rstudioapi r-cran-whoami r-cran-bench r-cran-brio r-cran-decor r-cran-desc r-cran-ggplot2 r-cran-lobstr r-cran-mockery r-cran-progress r-cran-scales r-cran-spelling r-cran-later r-cran-httpuv r-cran-webutils r-cran-rmariadb r-cran-rpostgresql r-cran-broom r-cran-rmysql r-cran-unitizer r-cran-shiny r-cran-testit r-cran-survival r-cran-pkgload r-cran-waldo r-cran-jpeg r-cran-readr r-cran-xml2 r-cran-r.rsp r-cran-sf r-cran-lintr r-cran-tidyverse r-cran-av r-cran-rsvg r-cran-pdftools r-cran-irdisplay r-cran-base64enc r-cran-r.devices r-cran-sodium r-cran-diagrammer r-cran-formattable r-cran-lubridate r-cran-nanotime r-cran-palmerpenguins r-cran-units r-cran-vdiffr r-cran-runit r-cran-fs r-cran-usethis r-cran-dbitest r-cran-gert r-cran-gh r-cran-hms r-cran-rvest r-cran-plyr r-cran-evaluate r-cran-here r-cran-pkgbuild r-cran-data.table r-cran-pkgdown r-cran-zeallot libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ca-certificates comerr-dev fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono hdf5-helpers imagemagick-7-common krb5-multidev libaec-dev libaec0 libasan8 libatomic1 libblas3 libblosc1 libboost-dev libboost1.83-dev libbrotli-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2 libcrypt-dev libcurl4-openssl-dev libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libevent-2.1-7t64 libexpat1 libffi8 libfftw3-double3 libfontconfig1 libfreetype6 libfribidi0 libgcc-14-dev libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libharfbuzz0b libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310 libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhnswlib-dev libhwasan0 libice6 libicu76 libidn2-0 libidn2-dev libitm1 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 liblapack3 liblcms2-2 libldap-dev libldap2 liblerc4 liblqr-1-0 liblsan0 libltdl7 libmagick++-7.q16-5 libmagickcore-7.q16-10 libmagickwand-7.q16-10 libncursesw6 libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libopenjp2-7 libp11-kit-dev libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpkgconf3 libpng16-16t64 libproc2-0 libpsl-dev libpsl5t64 libquadmath0 libraw23t64 libreadline8t64 librtmp-dev librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsnappy1v5 libssh2-1-dev libssh2-1t64 libssl-dev libstdc++-14-dev libsz2 libtasn1-6 libtasn1-6-dev libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunbound8 libunistring5 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6t64 libzstd-dev linux-libc-dev littler nettle-dev openssl pkgconf pkgconf-bin procps r-base-core r-bioc-annotate r-bioc-annotationdbi r-bioc-assorthead r-bioc-beachmat r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biocsingular r-bioc-biostrings r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-graph r-bioc-gseabase r-bioc-gsva r-bioc-hdf5array r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-scaledmatrix r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-spatialexperiment r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-dplyr r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-httr r-cran-irlba r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magick r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-purrr r-cran-r6 r-cran-rcpp r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-rsvd r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xml r-cran-xtable readline-common rpcsvc-proto sensible-utils ucf unzip x11-common xdg-utils zip zlib1g-dev 0 upgraded, 271 newly installed, 0 to remove and 0 not upgraded. Need to get 223 MB of archives. After this operation, 675 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.8.3-1~deb13u1 [123 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libgomp1 amd64 14.2.0-19 [137 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libfftw3-double3 amd64 3.3.10-2+b1 [781 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.48-1+deb13u5 [283 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1+deb13u1 [452 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 libdav1d7 amd64 1.5.1-1 [559 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 libheif-plugin-dav1d amd64 1.19.8-1+deb13u1 [11.9 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 libde265-0 amd64 1.0.15-1+deb13u2 [190 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 libheif-plugin-libde265 amd64 1.19.8-1+deb13u1 [15.5 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 libheif1 amd64 1.19.8-1+deb13u1 [522 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2+deb13u2 [160 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 libatomic1 amd64 14.2.0-19 [9308 B] Get:21 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get:22 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.84.4-3~deb13u5 [1521 kB] Get:23 http://deb.debian.org/debian trixie/main amd64 liblqr-1-0 amd64 0.4.2-2.1+b2 [29.5 kB] Get:24 http://deb.debian.org/debian trixie/main amd64 libltdl7 amd64 2.5.4-4 [416 kB] Get:25 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.3-2.1~deb13u2 [205 kB] Get:26 http://deb.debian.org/debian trixie/main amd64 libraw23t64 amd64 0.21.4-2+deb13u1 [391 kB] Get:27 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get:28 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:29 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get:30 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.7.0-3+deb13u3 [345 kB] Get:31 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get:32 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get:33 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:34 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:35 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:36 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:37 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get:38 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:39 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.1+deb13u3 [700 kB] Get:40 http://deb.debian.org/debian trixie/main amd64 imagemagick-7-common all 8:7.1.1.43+dfsg1-1+deb13u12 [77.6 kB] Get:41 http://deb.debian.org/debian trixie/main amd64 libmagickcore-7.q16-10 amd64 8:7.1.1.43+dfsg1-1+deb13u12 [1860 kB] Get:42 http://deb.debian.org/debian trixie/main amd64 libmagickwand-7.q16-10 amd64 8:7.1.1.43+dfsg1-1+deb13u12 [354 kB] Get:43 http://deb.debian.org/debian trixie/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:44 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get:45 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get:46 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get:47 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get:48 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.5.7-1~deb13u2 [1507 kB] Get:49 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20250419 [162 kB] Get:50 http://deb.debian.org/debian trixie/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get:51 http://deb.debian.org/debian trixie/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:52 http://deb.debian.org/debian trixie/main amd64 ucf all 3.0052 [43.3 kB] Get:53 http://deb.debian.org/debian trixie/main amd64 libc-dev-bin amd64 2.41-12+deb13u4 [60.0 kB] Get:54 http://deb.debian.org/debian trixie/main amd64 linux-libc-dev all 6.12.107-1 [2919 kB] Get:55 http://deb.debian.org/debian trixie/main amd64 libcrypt-dev amd64 1:4.4.38-1 [119 kB] Get:56 http://deb.debian.org/debian trixie/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:57 http://deb.debian.org/debian trixie/main amd64 libc6-dev amd64 2.41-12+deb13u4 [1995 kB] Get:58 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-3+b12 [25.0 kB] Get:59 http://deb.debian.org/debian trixie/main amd64 comerr-dev amd64 2.1-1.47.2-3+b12 [56.7 kB] Get:60 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.15.0-2.3 [463 kB] Get:61 http://deb.debian.org/debian trixie/main amd64 hdf5-helpers amd64 1.14.5+repack-3 [26.6 kB] Get:62 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5+deb13u1 [33.1 kB] Get:63 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5+deb13u1 [81.2 kB] Get:64 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get:65 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5+deb13u1 [326 kB] Get:66 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5+deb13u1 [138 kB] Get:67 http://deb.debian.org/debian trixie/main amd64 libgssrpc4t64 amd64 1.21.3-5+deb13u1 [60.1 kB] Get:68 http://deb.debian.org/debian trixie/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5+deb13u1 [42.6 kB] Get:69 http://deb.debian.org/debian trixie/main amd64 libkdb5-10t64 amd64 1.21.3-5+deb13u1 [42.8 kB] Get:70 http://deb.debian.org/debian trixie/main amd64 libkadm5srv-mit12 amd64 1.21.3-5+deb13u1 [54.4 kB] Get:71 http://deb.debian.org/debian trixie/main amd64 krb5-multidev amd64 1.21.3-5+deb13u1 [126 kB] Get:72 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get:73 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get:74 http://deb.debian.org/debian trixie/main amd64 libaec-dev amd64 1.1.3-1+b1 [21.5 kB] Get:75 http://deb.debian.org/debian trixie/main amd64 libasan8 amd64 14.2.0-19 [2725 kB] Get:76 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.1-6 [160 kB] Get:77 http://deb.debian.org/debian trixie/main amd64 libsnappy1v5 amd64 1.2.2-1 [29.3 kB] Get:78 http://deb.debian.org/debian trixie/main amd64 libblosc1 amd64 1.21.5+ds-1+b2 [49.5 kB] Get:79 http://deb.debian.org/debian trixie/main amd64 libitm1 amd64 14.2.0-19 [26.0 kB] Get:80 http://deb.debian.org/debian trixie/main amd64 liblsan0 amd64 14.2.0-19 [1204 kB] Get:81 http://deb.debian.org/debian trixie/main amd64 libtsan2 amd64 14.2.0-19 [2460 kB] Get:82 http://deb.debian.org/debian trixie/main amd64 libubsan1 amd64 14.2.0-19 [1074 kB] Get:83 http://deb.debian.org/debian trixie/main amd64 libhwasan0 amd64 14.2.0-19 [1488 kB] Get:84 http://deb.debian.org/debian trixie/main amd64 libquadmath0 amd64 14.2.0-19 [145 kB] Get:85 http://deb.debian.org/debian trixie/main amd64 libgcc-14-dev amd64 14.2.0-19 [2672 kB] Get:86 http://deb.debian.org/debian trixie/main amd64 libstdc++-14-dev amd64 14.2.0-19 [2376 kB] Get:87 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-4.2 [10.6 MB] Get:88 http://deb.debian.org/debian trixie/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get:89 http://deb.debian.org/debian trixie/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get:90 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get:91 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:92 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:93 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get:94 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get:95 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:96 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get:97 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get:98 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get:99 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get:100 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1.1+deb13u1 [76.2 kB] Get:101 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get:102 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:103 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:104 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2+deb13u1 [50.1 kB] Get:105 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-3+deb13u4 [1469 kB] Get:106 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:107 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1+deb13u2 [245 kB] Get:108 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.14.1-2+deb13u5 [391 kB] Get:109 http://deb.debian.org/debian trixie/main amd64 libidn2-dev amd64 2.3.8-2 [103 kB] Get:110 http://deb.debian.org/debian trixie/main amd64 libkrb5-dev amd64 1.21.3-5+deb13u1 [16.2 kB] Get:111 http://deb.debian.org/debian trixie/main amd64 libldap-dev amd64 2.6.10+dfsg-1 [312 kB] Get:112 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get:113 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get:114 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get:115 http://deb.debian.org/debian trixie/main amd64 libnghttp2-dev amd64 1.64.0-1.1+deb13u1 [117 kB] Get:116 http://deb.debian.org/debian trixie/main amd64 libnghttp3-dev amd64 1.8.0-1 [91.3 kB] Get:117 http://deb.debian.org/debian trixie/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get:118 http://deb.debian.org/debian trixie/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get:119 http://deb.debian.org/debian trixie/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get:120 http://deb.debian.org/debian trixie/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get:121 http://deb.debian.org/debian trixie/main amd64 libunbound8 amd64 1.22.0-2+deb13u3 [599 kB] Get:122 http://deb.debian.org/debian trixie/main amd64 libgnutls-dane0t64 amd64 3.8.9-3+deb13u4 [456 kB] Get:123 http://deb.debian.org/debian trixie/main amd64 libgnutls-openssl27t64 amd64 3.8.9-3+deb13u4 [456 kB] Get:124 http://deb.debian.org/debian trixie/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get:125 http://deb.debian.org/debian trixie/main amd64 libtasn1-6-dev amd64 4.20.0-2+deb13u1 [99.3 kB] Get:126 http://deb.debian.org/debian trixie/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Get:127 http://deb.debian.org/debian trixie/main amd64 libgnutls28-dev amd64 3.8.9-3+deb13u4 [1411 kB] Get:128 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get:129 http://deb.debian.org/debian trixie/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get:130 http://deb.debian.org/debian trixie/main amd64 libssl-dev amd64 3.5.7-1~deb13u2 [2965 kB] Get:131 http://deb.debian.org/debian trixie/main amd64 libssh2-1-dev amd64 1.11.1-1+deb13u2 [394 kB] Get:132 http://deb.debian.org/debian trixie/main amd64 libzstd-dev amd64 1.5.7+dfsg-1 [371 kB] Get:133 http://deb.debian.org/debian trixie/main amd64 libcurl4-openssl-dev amd64 8.14.1-2+deb13u5 [511 kB] Get:134 http://deb.debian.org/debian trixie/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB] Get:135 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get:136 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get:137 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+deb13u1 [75.2 kB] Get:138 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.2.0-1+deb13u1 [479 kB] Get:139 http://deb.debian.org/debian trixie/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB] Get:140 http://deb.debian.org/debian trixie/main amd64 libhdf5-cpp-310 amd64 1.14.5+repack-3 [133 kB] Get:141 http://deb.debian.org/debian trixie/main amd64 libhdf5-fortran-310 amd64 1.14.5+repack-3 [111 kB] Get:142 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [69.3 kB] Get:143 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-fortran-310 amd64 1.14.5+repack-3 [43.9 kB] Get:144 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-cpp-310 amd64 1.14.5+repack-3 [24.4 kB] Get:145 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-4 [292 kB] Get:146 http://deb.debian.org/debian trixie/main amd64 libjpeg-dev amd64 1:2.1.5-4 [72.2 kB] Get:147 http://deb.debian.org/debian trixie/main amd64 libhdf5-dev amd64 1.14.5+repack-3 [3165 kB] Get:148 http://deb.debian.org/debian trixie/main amd64 libhnswlib-dev all 0.8.0-1 [24.0 kB] Get:149 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+24+deb13u1 [217 kB] Get:150 http://deb.debian.org/debian trixie/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get:151 http://deb.debian.org/debian trixie/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get:152 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.1-6 [2447 kB] Get:153 http://deb.debian.org/debian trixie/main amd64 libmagick++-7.q16-5 amd64 8:7.1.1.43+dfsg1-1+deb13u12 [188 kB] Get:154 http://deb.debian.org/debian trixie/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:155 http://deb.debian.org/debian trixie/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get:156 http://deb.debian.org/debian trixie/main amd64 libpango-1.0-0 amd64 1.56.3-1 [226 kB] Get:157 http://deb.debian.org/debian trixie/main amd64 libpangoft2-1.0-0 amd64 1.56.3-1 [55.6 kB] Get:158 http://deb.debian.org/debian trixie/main amd64 libpangocairo-1.0-0 amd64 1.56.3-1 [35.7 kB] Get:159 http://deb.debian.org/debian trixie/main amd64 libpaper2 amd64 2.2.5-0.3+b2 [16.7 kB] Get:160 http://deb.debian.org/debian trixie/main amd64 libpaper-utils amd64 2.2.5-0.3+b2 [16.5 kB] Get:161 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:162 http://deb.debian.org/debian trixie/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get:163 http://deb.debian.org/debian trixie/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB] Get:164 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.6+ds-1 [11.0 kB] Get:165 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.6+ds-1 [83.3 kB] Get:166 http://deb.debian.org/debian trixie/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get:167 http://deb.debian.org/debian trixie/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get:168 http://deb.debian.org/debian trixie/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB] Get:169 http://deb.debian.org/debian trixie/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b2 [188 kB] Get:170 http://deb.debian.org/debian trixie/main amd64 zip amd64 3.0-15+deb13u1 [235 kB] Get:171 http://deb.debian.org/debian trixie/main amd64 unzip amd64 6.0-29+deb13u1 [173 kB] Get:172 http://deb.debian.org/debian trixie/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:173 http://deb.debian.org/debian trixie/main amd64 r-base-core amd64 4.5.0-3 [28.6 MB] Get:174 http://deb.debian.org/debian trixie/main amd64 r-cran-littler amd64 0.3.21-1 [107 kB] Get:175 http://deb.debian.org/debian trixie/main amd64 littler all 0.3.21-1 [16.9 kB] Get:176 http://deb.debian.org/debian trixie/main amd64 r-bioc-biocgenerics all 0.52.0-2 [627 kB] Get:177 http://deb.debian.org/debian trixie/main amd64 r-bioc-biobase amd64 2.66.0-2 [2316 kB] Get:178 http://deb.debian.org/debian trixie/main amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2061 kB] Get:179 http://deb.debian.org/debian trixie/main amd64 r-bioc-iranges amd64 2.40.1-3 [2310 kB] Get:180 http://deb.debian.org/debian trixie/main amd64 r-cran-dbi all 1.2.3-1 [852 kB] Get:181 http://deb.debian.org/debian trixie/main amd64 r-cran-bit amd64 4.6.0+dfsg-1 [455 kB] Get:182 http://deb.debian.org/debian trixie/main amd64 r-cran-bit64 amd64 4.6.0-1-4 [489 kB] Get:183 http://deb.debian.org/debian trixie/main amd64 r-cran-rlang amd64 1.1.5-3 [1709 kB] Get:184 http://deb.debian.org/debian trixie/main amd64 r-cran-cli amd64 3.6.4-1 [1370 kB] Get:185 http://deb.debian.org/debian trixie/main amd64 r-cran-glue amd64 1.8.0-1 [165 kB] Get:186 http://deb.debian.org/debian trixie/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get:187 http://deb.debian.org/debian trixie/main amd64 r-cran-vctrs amd64 0.6.5-1 [1375 kB] Get:188 http://deb.debian.org/debian trixie/main amd64 r-cran-blob all 1.2.4-1 [49.6 kB] Get:189 http://deb.debian.org/debian trixie/main amd64 r-cran-fastmap amd64 1.2.0-1 [72.2 kB] Get:190 http://deb.debian.org/debian trixie/main amd64 r-cran-cachem amd64 1.1.0-1 [73.9 kB] Get:191 http://deb.debian.org/debian trixie/main amd64 r-cran-memoise all 2.0.1-1 [53.8 kB] Get:192 http://deb.debian.org/debian trixie/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get:193 http://deb.debian.org/debian trixie/main amd64 r-cran-plogr all 0.2.0-3 [14.9 kB] Get:194 http://deb.debian.org/debian trixie/main amd64 r-cran-cpp11 all 0.5.2-1 [226 kB] Get:195 http://deb.debian.org/debian trixie/main amd64 r-cran-rsqlite amd64 2.3.9-1 [1216 kB] Get:196 http://deb.debian.org/debian trixie/main amd64 r-cran-curl amd64 6.2.1+dfsg-1 [195 kB] Get:197 http://deb.debian.org/debian trixie/main amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [445 kB] Get:198 http://deb.debian.org/debian trixie/main amd64 r-cran-mime amd64 0.12-2 [35.6 kB] Get:199 http://deb.debian.org/debian trixie/main amd64 r-cran-sys amd64 3.4.3-1 [44.4 kB] Get:200 http://deb.debian.org/debian trixie/main amd64 r-cran-askpass amd64 1.2.1-1 [24.2 kB] Get:201 http://deb.debian.org/debian trixie/main amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [402 kB] Get:202 http://deb.debian.org/debian trixie/main amd64 r-cran-r6 all 2.6.1-1 [106 kB] Get:203 http://deb.debian.org/debian trixie/main amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] Get:204 http://deb.debian.org/debian trixie/main amd64 r-cran-png amd64 0.1-8-1+b1 [41.5 kB] Get:205 http://deb.debian.org/debian trixie/main amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [9968 B] Get:206 http://deb.debian.org/debian trixie/main amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] Get:207 http://deb.debian.org/debian trixie/main amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.3 kB] Get:208 http://deb.debian.org/debian trixie/main amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] Get:209 http://deb.debian.org/debian trixie/main amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3848 kB] Get:210 http://deb.debian.org/debian trixie/main amd64 r-cran-crayon all 1.5.3-1 [165 kB] Get:211 http://deb.debian.org/debian trixie/main amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.4 MB] Get:212 http://deb.debian.org/debian trixie/main amd64 r-bioc-keggrest all 1.46.0+dfsg-3 [190 kB] Get:213 http://deb.debian.org/debian trixie/main amd64 r-bioc-annotationdbi all 1.68.0-2 [4703 kB] Get:214 http://deb.debian.org/debian trixie/main amd64 r-cran-xml amd64 3.99-0.18-1 [1762 kB] Get:215 http://deb.debian.org/debian trixie/main amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get:216 http://deb.debian.org/debian trixie/main amd64 r-bioc-annotate all 1.84.0+dfsg-2 [1865 kB] Get:217 http://deb.debian.org/debian trixie/main amd64 r-bioc-assorthead all 1.0.1+ds-2 [193 kB] Get:218 http://deb.debian.org/debian trixie/main amd64 r-cran-lattice amd64 0.22-7-1 [1418 kB] Get:219 http://deb.debian.org/debian trixie/main amd64 r-cran-matrix amd64 1.7-3-1 [4048 kB] Get:220 http://deb.debian.org/debian trixie/main amd64 r-cran-matrixstats amd64 1.5.0-1 [502 kB] Get:221 http://deb.debian.org/debian trixie/main amd64 r-bioc-matrixgenerics all 1.18.1-1 [449 kB] Get:222 http://deb.debian.org/debian trixie/main amd64 r-cran-abind all 1.4-8-1 [68.1 kB] Get:223 http://deb.debian.org/debian trixie/main amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [702 kB] Get:224 http://deb.debian.org/debian trixie/main amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-2 [1372 kB] Get:225 http://deb.debian.org/debian trixie/main amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2076 kB] Get:226 http://deb.debian.org/debian trixie/main amd64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get:227 http://deb.debian.org/debian trixie/main amd64 r-cran-rcpp amd64 1.0.14-1 [2080 kB] Get:228 http://deb.debian.org/debian trixie/main amd64 r-bioc-beachmat amd64 2.22.0+ds-3~deb13u1 [897 kB] Get:229 http://deb.debian.org/debian trixie/main amd64 r-cran-generics all 0.1.3-1 [81.4 kB] Get:230 http://deb.debian.org/debian trixie/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB] Get:231 http://deb.debian.org/debian trixie/main amd64 r-cran-utf8 amd64 1.2.4-1 [133 kB] Get:232 http://deb.debian.org/debian trixie/main amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] Get:233 http://deb.debian.org/debian trixie/main amd64 r-cran-fansi amd64 1.0.6-2 [629 kB] Get:234 http://deb.debian.org/debian trixie/main amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [425 kB] Get:235 http://deb.debian.org/debian trixie/main amd64 r-cran-withr all 3.0.2+dfsg-1 [226 kB] Get:236 http://deb.debian.org/debian trixie/main amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [223 kB] Get:237 http://deb.debian.org/debian trixie/main amd64 r-cran-dplyr amd64 1.1.4-4 [1543 kB] Get:238 http://deb.debian.org/debian trixie/main amd64 r-cran-purrr amd64 1.0.4-1 [556 kB] Get:239 http://deb.debian.org/debian trixie/main amd64 r-cran-stringi amd64 1.8.4-1+b1 [896 kB] Get:240 http://deb.debian.org/debian trixie/main amd64 r-cran-stringr all 1.5.1-1 [296 kB] Get:241 http://deb.debian.org/debian trixie/main amd64 r-cran-tidyr amd64 1.3.1-1 [1163 kB] Get:242 http://deb.debian.org/debian trixie/main amd64 r-cran-dbplyr all 2.5.0+dfsg-1 [1247 kB] Get:243 http://deb.debian.org/debian trixie/main amd64 r-cran-filelock amd64 1.0.3-1 [27.3 kB] Get:244 http://deb.debian.org/debian trixie/main amd64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [302 kB] Get:245 http://deb.debian.org/debian trixie/main amd64 r-cran-formatr all 1.14-2 [152 kB] Get:246 http://deb.debian.org/debian trixie/main amd64 r-cran-lambda.r all 1.2.4-2 [118 kB] Get:247 http://deb.debian.org/debian trixie/main amd64 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get:248 http://deb.debian.org/debian trixie/main amd64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get:249 http://deb.debian.org/debian trixie/main amd64 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get:250 http://deb.debian.org/debian trixie/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get:251 http://deb.debian.org/debian trixie/main amd64 r-cran-bh all 1.84.0-1 [5912 B] Get:252 http://deb.debian.org/debian trixie/main amd64 r-bioc-biocparallel amd64 1.40.0-2 [1326 kB] Get:253 http://deb.debian.org/debian trixie/main amd64 r-bioc-scaledmatrix all 1.14.0+dfsg-2 [326 kB] Get:254 http://deb.debian.org/debian trixie/main amd64 r-cran-irlba amd64 2.3.5.1-4 [296 kB] Get:255 http://deb.debian.org/debian trixie/main amd64 r-cran-rsvd all 1.0.5-1 [3589 kB] Get:256 http://deb.debian.org/debian trixie/main amd64 r-bioc-biocsingular amd64 1.22.0+ds-2 [356 kB] Get:257 http://deb.debian.org/debian trixie/main amd64 r-bioc-sparsematrixstats amd64 1.18.0+dfsg-2 [942 kB] Get:258 http://deb.debian.org/debian trixie/main amd64 r-bioc-delayedmatrixstats all 1.28.1+ds-1 [504 kB] Get:259 http://deb.debian.org/debian trixie/main amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2092 kB] Get:260 http://deb.debian.org/debian trixie/main amd64 r-bioc-graph amd64 1.84.1-2 [1284 kB] Get:261 http://deb.debian.org/debian trixie/main amd64 r-bioc-gseabase all 1.68.0+ds-2 [716 kB] Get:262 http://deb.debian.org/debian trixie/main amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1116 kB] Get:263 http://deb.debian.org/debian trixie/main amd64 r-bioc-singlecellexperiment all 1.28.1+ds-2 [835 kB] Get:264 http://deb.debian.org/debian trixie/main amd64 r-cran-rjson amd64 0.2.23-1 [100.0 kB] Get:265 http://deb.debian.org/debian trixie/main amd64 r-cran-magick amd64 2.8.5+dfsg-1+b1 [508 kB] Get:266 http://deb.debian.org/debian trixie/main amd64 r-bioc-spatialexperiment all 1.16.0+ds-2 [960 kB] Get:267 http://deb.debian.org/debian trixie/main amd64 r-bioc-rhdf5lib amd64 1.28.0+dfsg-2 [104 kB] Get:268 http://deb.debian.org/debian trixie/main amd64 r-bioc-rhdf5filters amd64 1.18.1+dfsg-1 [139 kB] Get:269 http://deb.debian.org/debian trixie/main amd64 r-bioc-rhdf5 amd64 2.50.2+dfsg-1 [865 kB] Get:270 http://deb.debian.org/debian trixie/main amd64 r-bioc-hdf5array amd64 1.34.0-2 [8788 kB] Get:271 http://deb.debian.org/debian trixie/main amd64 r-bioc-gsva amd64 2.0.5+ds-1 [1251 kB] Preconfiguring packages ... Fetched 223 MB in 2s (133 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4955 files and directories currently installed.) Preparing to unpack .../000-libexpat1_2.8.3-1~deb13u1_amd64.deb ... Unpacking libexpat1:amd64 (2.8.3-1~deb13u1) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../001-libgomp1_14.2.0-19_amd64.deb ... Unpacking libgomp1:amd64 (14.2.0-19) ... 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Unpacking libtiff6:amd64 (4.7.0-3+deb13u3) ... Selecting previously unselected package libwebpdemux2:amd64. Preparing to unpack .../030-libwebpdemux2_1.5.0-0.1_amd64.deb ... Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ... Selecting previously unselected package libwebpmux3:amd64. Preparing to unpack .../031-libwebpmux3_1.5.0-0.1_amd64.deb ... Unpacking libwebpmux3:amd64 (1.5.0-0.1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../032-libxau6_1%3a1.0.11-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.11-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../033-libxdmcp6_1%3a1.1.5-1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.5-1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../034-libxcb1_1.17.0-2+b1_amd64.deb ... Unpacking libxcb1:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../035-libx11-data_2%3a1.8.12-1_all.deb ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../161-libsm6_2%3a1.2.6-1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.6-1) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../162-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... Selecting previously unselected package libtirpc-common. 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Setting up r-cran-sys (3.4.3-1) ... Setting up r-cran-plogr (0.2.0-3) ... Setting up r-cran-withr (3.0.2+dfsg-1) ... Setting up r-cran-mime (0.12-2) ... Setting up r-cran-generics (0.1.3-1) ... Setting up r-cran-abind (1.4-8-1) ... Setting up r-cran-lambda.r (1.2.4-2) ... Setting up r-cran-dbi (1.2.3-1) ... Setting up r-cran-fansi (1.0.6-2) ... Setting up r-cran-snow (1:0.4.4-2) ... Setting up r-cran-glue (1.8.0-1) ... Setting up r-cran-bit (4.6.0+dfsg-1) ... Setting up r-cran-xtable (1:1.8-4-2) ... Setting up r-cran-cli (3.6.4-1) ... Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... Setting up r-cran-bit64 (4.6.0-1-4) ... Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... Setting up r-cran-askpass (1.2.1-1) ... Setting up r-cran-fastmap (1.2.0-1) ... Setting up r-cran-png (0.1-8-1+b1) ... Setting up r-bioc-biobase (2.66.0-2) ... Setting up libkrb5-dev:amd64 (1.21.3-5+deb13u1) ... Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-utf8 (1.2.4-1) ... Setting up r-cran-stringi (1.8.4-1+b1) ... Setting up libcurl4-openssl-dev:amd64 (8.14.1-2+deb13u5) ... Setting up r-cran-cpp11 (0.5.2-1) ... Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... Setting up r-cran-futile.logger (1.4.3-4) ... Setting up r-cran-matrix (1.7-3-1) ... Setting up r-cran-irlba (2.3.5.1-4) ... Setting up r-cran-cachem (1.1.0-1) ... Setting up r-bioc-iranges (2.40.1-3) ... Setting up r-bioc-assorthead (1.0.1+ds-2) ... Setting up r-bioc-sparsematrixstats (1.18.0+dfsg-2) ... Setting up r-cran-vctrs (0.6.5-1) ... Setting up r-bioc-graph (1.84.1-2) ... Setting up r-cran-pillar (1.10.1+dfsg-1) ... Setting up libhdf5-hl-cpp-310:amd64 (1.14.5+repack-3) ... Setting up libhdf5-hl-fortran-310:amd64 (1.14.5+repack-3) ... Setting up r-cran-openssl (2.3.2+dfsg-1) ... Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... Setting up r-cran-stringr (1.5.1-1) ... Setting up r-bioc-biocparallel (1.40.0-2) ... Setting up r-cran-tibble (3.2.1+dfsg-3) ... Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... Setting up r-cran-rsvd (1.0.5-1) ... Setting up r-cran-httr (1.4.7+dfsg-1) ... Setting up libhdf5-dev (1.14.5+repack-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up r-cran-memoise (2.0.1-1) ... Setting up r-cran-purrr (1.0.4-1) ... Setting up r-cran-blob (1.2.4-1) ... Setting up r-bioc-xvector (0.46.0-2) ... Setting up r-cran-dplyr (1.1.4-4) ... Setting up r-cran-rsqlite (2.3.9-1) ... Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... Setting up r-bioc-sparsearray (1.6.2+dfsg-2) ... Setting up r-bioc-rhdf5lib (1.28.0+dfsg-2) ... Setting up r-bioc-rhdf5filters (1.18.1+dfsg-1) ... Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... Setting up r-cran-tidyr (1.3.1-1) ... Setting up r-cran-dbplyr (2.5.0+dfsg-1) ... Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ... Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... Setting up r-bioc-rhdf5 (2.50.2+dfsg-1) ... Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... Setting up r-bioc-delayedmatrixstats (1.28.1+ds-1) ... Setting up r-bioc-beachmat (2.22.0+ds-3~deb13u1) ... Setting up r-bioc-scaledmatrix (1.14.0+dfsg-2) ... Setting up r-bioc-hdf5array (1.34.0-2) ... Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... Setting up r-bioc-keggrest (1.46.0+dfsg-3) ... Setting up r-bioc-biocsingular (1.22.0+ds-2) ... Setting up r-bioc-annotationdbi (1.68.0-2) ... Setting up r-bioc-annotate (1.84.0+dfsg-2) ... Setting up r-bioc-singlecellexperiment (1.28.1+ds-2) ... Setting up r-bioc-gseabase (1.68.0+ds-2) ... Setting up libheif-plugin-dav1d:amd64 (1.19.8-1+deb13u1) ... Setting up libheif-plugin-libde265:amd64 (1.19.8-1+deb13u1) ... Setting up libheif1:amd64 (1.19.8-1+deb13u1) ... Setting up libmagickcore-7.q16-10:amd64 (8:7.1.1.43+dfsg1-1+deb13u12) ... Setting up libmagickwand-7.q16-10:amd64 (8:7.1.1.43+dfsg1-1+deb13u12) ... Setting up libmagick++-7.q16-5:amd64 (8:7.1.1.43+dfsg1-1+deb13u12) ... Setting up r-cran-magick (2.8.5+dfsg-1+b1) ... Setting up r-bioc-spatialexperiment (1.16.0+ds-2) ... Setting up r-bioc-gsva (2.0.5+ds-1) ... Processing triggers for libc-bin (2.41-12+deb13u4) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-get', '-y', 'install', 'r-bioc-gsva'] 0m28.1s INFO: Running scripts post_install 0m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_install_exceptions'] 0m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_install_exceptions'] 0m28.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpveszhioq'] 0m30.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpveszhioq'] 0m30.2s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpveszhioq to testing 0m30.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m30.2s INFO: Running scripts pre_distupgrade 0m30.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m30.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m30.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_distupgrade_exceptions'] 0m30.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_distupgrade_exceptions'] 0m30.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m30.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m30.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m30.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m30.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m30.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m30.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-get', 'update'] 0m32.9s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [151 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [10.1 MB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6649 kB] Fetched 16.9 MB in 1s (12.7 MB/s) Reading package lists... 0m32.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-get', 'update'] 0m32.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-get', '-yf', 'dist-upgrade'] 1m10.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: comerr-dev fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono git git-man hdf5-helpers imagemagick-7-common krb5-multidev libaec-dev libaec0 libasan8 libatomic1 libblas3 libblosc1 libboost-dev libboost1.90-dev libbrotli-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2 libcrypt-dev libcurl3t64-gnutls libcurl4-gnutls libcurl4-openssl-dev libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 liberror-perl libevent-2.1-7t64 libexpat1 libffi8 libfftw3-double3 libfontconfig1 libfreetype6 libfribidi0 libgcc-14-dev libgcc-16-dev libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls28-dev libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libharfbuzz0b libhdf5-310 libhdf5-320 libhdf5-cpp-310 libhdf5-cpp-320 libhdf5-dev libhdf5-fortran-310 libhdf5-fortran-320 libhdf5-hl-310 libhdf5-hl-320 libhdf5-hl-cpp-310 libhdf5-hl-cpp-320 libhdf5-hl-fortran-310 libhdf5-hl-fortran-320 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhnswlib-dev libhwasan0 libice6 libicu76 libicu78 libidn2-dev libitm1 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 liblapack3 liblcms2-2 libldap-dev libldap2 liblerc4 liblqr-1-0 liblsan0 libltdl7 libmagick++-7.q16-5 libmagickcore-7.q16-10 libmagickwand-7.q16-10 libncursesw6 libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl-dev libngtcp2-crypto-ossl0 libngtcp2-dev libopenjp2-7 libp11-kit-dev libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpkgconf3 libpkgconf7 libpng16-16t64 libproc2-0 libproc2-1 libpsl-dev libpsl5t64 libquadmath0 libraw23t64 libraw25 libreadline8t64 librtmp-dev librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsnappy1v5 libssh2-1-dev libssh2-1t64 libssl-dev libstdc++-14-dev libstdc++-16-dev libsz2 libtasn1-6 libtasn1-6-dev libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunbound8 libunistring-dev libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxml2-16 libxrender1 libxss1 libxt6t64 libzstd-dev linux-libc-dev littler nettle-dev pkgconf pkgconf-bin procps r-base-core r-bioc-assorthead r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-genomeinfodbdata r-bioc-graph r-bioc-matrixgenerics r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-dplyr r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-httr r-cran-httr2 r-cran-irlba r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magick r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-purrr r-cran-r6 r-cran-rcpp r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-rsvd r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xml r-cran-xtable r-pkg-team-core-architecture readline-common rpcsvc-proto ucf unzip x11-common xdg-utils zip zlib1g-dev Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libboost1.83-dev libgnutls-openssl27t64 r-bioc-annotate r-bioc-annotationdbi r-bioc-beachmat r-bioc-biocparallel r-bioc-biocsingular r-bioc-biostrings r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-genomeinfodb r-bioc-genomicranges r-bioc-gseabase r-bioc-gsva r-bioc-hdf5array r-bioc-iranges r-bioc-keggrest r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-scaledmatrix r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-spatialexperiment r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc The following NEW packages will be installed: gcc-16-base git git-man libboost1.90-dev libc-gconv-modules-extra libcurl3t64-gnutls libcurl4-gnutls liberror-perl libgcc-16-dev libgdbm-compat4t64 libgdbm6t64 libhdf5-320 libhdf5-cpp-320 libhdf5-fortran-320 libhdf5-hl-320 libhdf5-hl-cpp-320 libhdf5-hl-fortran-320 libicu78 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl-dev libngtcp2-crypto-ossl0 libngtcp2-dev libperl5.42 libpkgconf7 libproc2-1 libraw25 libstdc++-16-dev libunistring-dev libxml2-16 perl perl-modules-5.42 r-cran-httr2 r-pkg-team-core-architecture The following packages will be upgraded: apt base-files base-passwd bash bsdutils ca-certificates comerr-dev coreutils debconf debianutils diffutils dpkg findutils fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-14-base grep gzip hdf5-helpers imagemagick-7-common init-system-helpers krb5-multidev libacl1 libaec-dev libaec0 libapt-pkg7.0 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libblas3 libblkid1 libblosc1 libboost-dev libbrotli-dev libbrotli1 libbsd0 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcairo2 libcap-ng0 libcap2 libcom-err2 libcrypt-dev libcrypt1 libcurl4-openssl-dev libcurl4t64 libdatrie1 libdav1d7 libdb5.3t64 libde265-0 libdebconfclient0 libdeflate0 libevent-2.1-7t64 libexpat1 libffi8 libfftw3-double3 libfontconfig1 libfreetype6 libfribidi0 libgcc-14-dev libgcc-s1 libgfortran5 libglib2.0-0t64 libgmp-dev libgmp10 libgmpxx4ldbl libgnutls-dane0t64 libgnutls28-dev libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libharfbuzz0b libhdf5-dev libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhnswlib-dev libhogweed6t64 libhwasan0 libice6 libidn2-0 libidn2-dev libitm1 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 liblapack3 liblastlog2-2 liblcms2-2 libldap-dev libldap2 liblerc4 liblqr-1-0 liblsan0 libltdl7 liblz4-1 liblzma5 libmagick++-7.q16-5 libmagickcore-7.q16-10 libmagickwand-7.q16-10 libmd0 libmount1 libncursesw6 libnettle8t64 libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libopenjp2-7 libp11-kit-dev libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-8-0 libpixman-1-0 libpng16-16t64 libpsl-dev libpsl5t64 libquadmath0 libreadline8t64 librtmp-dev librtmp1 libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsharpyuv0 libsm6 libsmartcols1 libsnappy1v5 libsqlite3-0 libssh2-1-dev libssh2-1t64 libssl-dev libssl3t64 libstdc++-14-dev libstdc++6 libsystemd0 libsz2 libtasn1-6 libtasn1-6-dev libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtinfo6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libudev1 libunbound8 libunistring5 libuuid1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6t64 libxxhash0 libzstd-dev libzstd1 linux-libc-dev littler login login.defs mawk mount ncurses-base ncurses-bin nettle-dev openssl openssl-provider-legacy passwd perl-base pkgconf pkgconf-bin procps r-base-core r-bioc-assorthead r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-genomeinfodbdata r-bioc-graph r-bioc-matrixgenerics r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-blob r-cran-cachem r-cran-cli r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-dplyr r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-httr r-cran-irlba r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magick r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-plogr r-cran-png r-cran-purrr r-cran-r6 r-cran-rcpp r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-rsvd r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xml r-cran-xtable readline-common rpcsvc-proto sed sensible-utils sqv sysvinit-utils tar tzdata ucf unzip util-linux x11-common zip zlib1g zlib1g-dev 299 upgraded, 34 newly installed, 31 to remove and 0 not upgraded. Need to get 236 MB of archives. After this operation, 150 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 rpcsvc-proto amd64 1.4.4-1 [63.4 kB] Get:2 http://deb.debian.org/debian forky/main amd64 libc-dev-bin amd64 2.43-7 [39.7 kB] Get:3 http://deb.debian.org/debian forky/main amd64 libcrypt1 amd64 1:4.5.2+20251210-1 [100 kB] Get:4 http://deb.debian.org/debian forky/main amd64 libcrypt-dev amd64 1:4.5.2+20251210-1 [130 kB] Get:5 http://deb.debian.org/debian forky/main amd64 libc6-dev amd64 2.43-7 [2069 kB] Get:6 http://deb.debian.org/debian forky/main amd64 libc-gconv-modules-extra amd64 2.43-7 [1103 kB] Get:7 http://deb.debian.org/debian forky/main amd64 libc6 amd64 2.43-7 [1866 kB] Get:8 http://deb.debian.org/debian forky/main amd64 libc-bin amd64 2.43-7 [621 kB] Get:9 http://deb.debian.org/debian forky/main amd64 linux-libc-dev all 7.2.11-1 [2029 kB] Get:10 http://deb.debian.org/debian forky/main amd64 gcc-16-base amd64 16.2.0-3 [38.7 kB] Get:11 http://deb.debian.org/debian forky/main amd64 libgcc-s1 amd64 16.2.0-3 [74.0 kB] Get:12 http://deb.debian.org/debian forky/main amd64 base-files amd64 14.2 [88.0 kB] Get:13 http://deb.debian.org/debian forky/main amd64 debianutils amd64 5.24 [93.3 kB] Get:14 http://deb.debian.org/debian forky/main amd64 bash amd64 5.3-4 [1582 kB] Get:15 http://deb.debian.org/debian forky/main amd64 coreutils amd64 9.10-1 [3142 kB] Get:16 http://deb.debian.org/debian forky/main amd64 diffutils amd64 1:3.12-1 [405 kB] Get:17 http://deb.debian.org/debian forky/main amd64 libbz2-1.0 amd64 1.0.8-6+b2 [39.9 kB] Get:18 http://deb.debian.org/debian forky/main amd64 libxxhash0 amd64 0.8.3-2+b2 [27.1 kB] Get:19 http://deb.debian.org/debian forky/main amd64 liblz4-1 amd64 1.10.0-10 [70.3 kB] Get:20 http://deb.debian.org/debian forky/main amd64 liblzma5 amd64 5.8.4-1 [354 kB] Get:21 http://deb.debian.org/debian forky/main amd64 libssl-dev amd64 3.6.5-1 [3165 kB] Get:22 http://deb.debian.org/debian forky/main amd64 libssl3t64 amd64 3.6.5-1 [2621 kB] Get:23 http://deb.debian.org/debian forky/main amd64 openssl-provider-legacy amd64 3.6.5-1 [329 kB] Get:24 http://deb.debian.org/debian forky/main amd64 libzstd-dev amd64 1.5.7+dfsg-4 [371 kB] Get:25 http://deb.debian.org/debian forky/main amd64 libzstd1 amd64 1.5.7+dfsg-4 [304 kB] Get:26 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.2-3 [918 kB] Get:27 http://deb.debian.org/debian forky/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.2-3 [90.9 kB] Get:28 http://deb.debian.org/debian forky/main amd64 libstdc++6 amd64 16.2.0-3 [823 kB] Get:29 http://deb.debian.org/debian forky/main amd64 libsystemd0 amd64 262-1 [512 kB] Get:30 http://deb.debian.org/debian forky/main amd64 libudev1 amd64 262-1 [148 kB] Get:31 http://deb.debian.org/debian forky/main amd64 libapt-pkg7.0 amd64 3.3.3 [1284 kB] Get:32 http://deb.debian.org/debian forky/main amd64 dpkg amd64 1.23.11 [1214 kB] Get:33 http://deb.debian.org/debian forky/main amd64 findutils amd64 4.11.0-3 [788 kB] Get:34 http://deb.debian.org/debian forky/main amd64 grep amd64 3.12-1 [443 kB] Get:35 http://deb.debian.org/debian forky/main amd64 gzip amd64 1.14-1 [149 kB] Get:36 http://deb.debian.org/debian forky/main amd64 libncursesw6 amd64 6.6+20260608-2 [137 kB] Get:37 http://deb.debian.org/debian forky/main amd64 libtinfo6 amd64 6.6+20260608-2 [353 kB] Get:38 http://deb.debian.org/debian forky/main amd64 ncurses-bin amd64 6.6+20260608-2 [445 kB] Get:39 http://deb.debian.org/debian forky/main amd64 libtext-charwidth-perl amd64 0.04-12+b1 [9344 B] Get:40 http://deb.debian.org/debian forky/main amd64 perl-base amd64 5.42.3-1 [1878 kB] Get:41 http://deb.debian.org/debian forky/main amd64 sed amd64 4.9-3 [331 kB] Get:42 http://deb.debian.org/debian forky/main amd64 tar amd64 1.35+dfsg-6 [825 kB] Get:43 http://deb.debian.org/debian forky/main amd64 libuuid1 amd64 2.42.4-1 [34.5 kB] Get:44 http://deb.debian.org/debian forky/main amd64 bsdutils amd64 1:2.42.4-1 [92.9 kB] Get:45 http://deb.debian.org/debian forky/main amd64 libblkid1 amd64 2.42.4-1 [185 kB] Get:46 http://deb.debian.org/debian forky/main amd64 libmount1 amd64 2.42.4-1 [232 kB] Get:47 http://deb.debian.org/debian forky/main amd64 libsmartcols1 amd64 2.42.4-1 [153 kB] Get:48 http://deb.debian.org/debian forky/main amd64 util-linux amd64 2.42.4-1 [1254 kB] Get:49 http://deb.debian.org/debian forky/main amd64 mount amd64 2.42.4-1 [172 kB] Get:50 http://deb.debian.org/debian forky/main amd64 libpcre2-8-0 amd64 10.48-3.1 [312 kB] Get:51 http://deb.debian.org/debian forky/main amd64 libselinux1 amd64 3.11-2.1 [92.2 kB] Get:52 http://deb.debian.org/debian forky/main amd64 libdebconfclient0 amd64 0.283 [7572 B] Get:53 http://deb.debian.org/debian forky/main amd64 base-passwd amd64 3.6.8 [54.6 kB] Get:54 http://deb.debian.org/debian forky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5+b2 [641 kB] Get:55 http://deb.debian.org/debian forky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5+b2 [328 kB] Get:56 http://deb.debian.org/debian forky/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5+b2 [560 kB] Get:57 http://deb.debian.org/debian forky/main amd64 libhogweed6t64 amd64 3.10.2-1+b1 [335 kB] Get:58 http://deb.debian.org/debian forky/main amd64 nettle-dev amd64 3.10.2-1+b1 [1321 kB] Get:59 http://deb.debian.org/debian forky/main amd64 libnettle8t64 amd64 3.10.2-1+b1 [305 kB] Get:60 http://deb.debian.org/debian forky/main amd64 sqv amd64 1.5.0-1 [704 kB] Get:61 http://deb.debian.org/debian forky/main amd64 libseccomp2 amd64 2.6.1-1+b1 [51.7 kB] Get:62 http://deb.debian.org/debian forky/main amd64 apt amd64 3.3.3 [1568 kB] Get:63 http://deb.debian.org/debian forky/main amd64 init-system-helpers all 1.69+nmu3 [37.3 kB] Get:64 http://deb.debian.org/debian forky/main amd64 ncurses-base all 6.6+20260608-2 [276 kB] Get:65 http://deb.debian.org/debian forky/main amd64 sysvinit-utils amd64 3.18-1 [29.7 kB] Get:66 http://deb.debian.org/debian forky/main amd64 libgomp1 amd64 16.2.0-3 [151 kB] Get:67 http://deb.debian.org/debian forky/main amd64 libitm1 amd64 16.2.0-3 [26.9 kB] Get:68 http://deb.debian.org/debian forky/main amd64 libatomic1 amd64 16.2.0-3 [10.4 kB] Get:69 http://deb.debian.org/debian forky/main amd64 libasan8 amd64 16.2.0-3 [2888 kB] Get:70 http://deb.debian.org/debian forky/main amd64 liblsan0 amd64 16.2.0-3 [1281 kB] Get:71 http://deb.debian.org/debian forky/main amd64 libubsan1 amd64 16.2.0-3 [1136 kB] Get:72 http://deb.debian.org/debian forky/main amd64 libquadmath0 amd64 16.2.0-3 [148 kB] Get:73 http://deb.debian.org/debian forky/main amd64 libhwasan0 amd64 16.2.0-3 [1580 kB] Get:74 http://deb.debian.org/debian forky/main amd64 libgfortran5 amd64 16.2.0-3 [879 kB] Get:75 http://deb.debian.org/debian forky/main amd64 libstdc++-14-dev amd64 14.4.0-2 [2685 kB] Get:76 http://deb.debian.org/debian forky/main amd64 libgcc-14-dev amd64 14.4.0-2 [2675 kB] Get:77 http://deb.debian.org/debian forky/main amd64 libtsan2 amd64 16.2.0-3 [2574 kB] Get:78 http://deb.debian.org/debian forky/main amd64 gcc-14-base amd64 14.4.0-2 [35.3 kB] Get:79 http://deb.debian.org/debian forky/main amd64 libgcc-16-dev amd64 16.2.0-3 [2782 kB] Get:80 http://deb.debian.org/debian forky/main amd64 libstdc++-16-dev amd64 16.2.0-3 [2755 kB] Get:81 http://deb.debian.org/debian forky/main amd64 libboost-dev amd64 1.90.0.2+nmu1 [3200 B] Get:82 http://deb.debian.org/debian forky/main amd64 libboost1.90-dev amd64 1.90.0-6.1+b1 [11.3 MB] Get:83 http://deb.debian.org/debian forky/main amd64 libidn2-dev amd64 2.3.8-5 [102 kB] Get:84 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.4.2-1 [480 kB] Get:85 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-5 [109 kB] Get:86 http://deb.debian.org/debian forky/main amd64 libp11-kit-dev amd64 0.26.5-1 [226 kB] Get:87 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.8.0-2 [32.5 kB] Get:88 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.26.5-1 [482 kB] Get:89 http://deb.debian.org/debian forky/main amd64 libtasn1-6-dev amd64 4.21.0-2+b1 [98.6 kB] Get:90 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.21.0-2+b1 [49.3 kB] Get:91 http://deb.debian.org/debian forky/main amd64 libgnutls28-dev amd64 3.8.13-1 [1479 kB] Get:92 http://deb.debian.org/debian forky/main amd64 libgnutls-dane0t64 amd64 3.8.13-1 [496 kB] Get:93 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.13-1 [1546 kB] Get:94 http://deb.debian.org/debian forky/main amd64 libevent-2.1-7t64 amd64 2.1.13-stable-1 [183 kB] Get:95 http://deb.debian.org/debian forky/main amd64 libunbound8 amd64 1.26.1-1 [664 kB] Get:96 http://deb.debian.org/debian forky/main amd64 debconf all 1.5.92 [123 kB] Get:97 http://deb.debian.org/debian forky/main amd64 libpam-runtime all 1.7.0-8 [246 kB] Get:98 http://deb.debian.org/debian forky/main amd64 libaudit-common all 1:4.1.2-1 [14.3 kB] Get:99 http://deb.debian.org/debian forky/main amd64 libcap-ng0 amd64 0.9.6-1 [19.0 kB] Get:100 http://deb.debian.org/debian forky/main amd64 libaudit1 amd64 1:4.1.2-1+b2 [59.1 kB] Get:101 http://deb.debian.org/debian forky/main amd64 libpam0g amd64 1.7.0-8 [66.9 kB] Get:102 http://deb.debian.org/debian forky/main amd64 libpam-modules-bin amd64 1.7.0-8 [46.3 kB] Get:103 http://deb.debian.org/debian forky/main amd64 libpam-modules amd64 1.7.0-8 [168 kB] Get:104 http://deb.debian.org/debian forky/main amd64 login amd64 1:4.16.0-2+really2.42.4-1 [124 kB] Get:105 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.9.0-1 [133 kB] Get:106 http://deb.debian.org/debian forky/main amd64 libfftw3-double3 amd64 3.3.11-1 [713 kB] Get:107 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-mono all 2.37-9 [488 kB] Get:108 http://deb.debian.org/debian forky/main amd64 fonts-dejavu-core all 2.37-9 [840 kB] Get:109 http://deb.debian.org/debian forky/main amd64 fontconfig-config amd64 2.17.1-5 [56.1 kB] Get:110 http://deb.debian.org/debian forky/main amd64 libbrotli-dev amd64 1.2.0-4+b1 [324 kB] Get:111 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.2.0-4+b1 [312 kB] Get:112 http://deb.debian.org/debian forky/main amd64 libpng16-16t64 amd64 1.6.59-1 [293 kB] Get:113 http://deb.debian.org/debian forky/main amd64 libfreetype6 amd64 2.14.3+dfsg-3 [510 kB] Get:114 http://deb.debian.org/debian forky/main amd64 libfontconfig1 amd64 2.17.1-5 [132 kB] Get:115 http://deb.debian.org/debian forky/main amd64 libdav1d7 amd64 1.5.4-1 [583 kB] Get:116 http://deb.debian.org/debian forky/main amd64 libheif-plugin-libde265 amd64 1.23.6-2 [19.6 kB] Get:117 http://deb.debian.org/debian forky/main amd64 libheif1 amd64 1.23.6-2 [885 kB] Get:118 http://deb.debian.org/debian forky/main amd64 libheif-plugin-dav1d amd64 1.23.6-2 [22.1 kB] Get:119 http://deb.debian.org/debian forky/main amd64 libde265-0 amd64 1.1.3-1+b1 [219 kB] Get:120 http://deb.debian.org/debian forky/main amd64 libsharpyuv0 amd64 1.6.0-0.1 [116 kB] Get:121 http://deb.debian.org/debian forky/main amd64 libjbig0 amd64 2.1-6.1+b3 [32.2 kB] Get:122 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo-dev amd64 1:3.1.3-4 [356 kB] Get:123 http://deb.debian.org/debian forky/main amd64 libjpeg62-turbo amd64 1:3.1.3-4 [213 kB] Get:124 http://deb.debian.org/debian forky/main amd64 liblcms2-2 amd64 2.19.1-1 [164 kB] Get:125 http://deb.debian.org/debian forky/main amd64 libglib2.0-0t64 amd64 2.90.1-2 [1620 kB] Get:126 http://deb.debian.org/debian forky/main amd64 liblqr-1-0 amd64 0.4.2-2.2+b1 [30.0 kB] Get:127 http://deb.debian.org/debian forky/main amd64 libltdl7 amd64 2.6.2-3 [427 kB] Get:128 http://deb.debian.org/debian forky/main amd64 libopenjp2-7 amd64 2.5.4-1.1 [205 kB] Get:129 http://deb.debian.org/debian forky/main amd64 libraw25 amd64 0.22.1-1 [424 kB] Get:130 http://deb.debian.org/debian forky/main amd64 libdeflate0 amd64 1.25-1 [48.0 kB] Get:131 http://deb.debian.org/debian forky/main amd64 liblerc4 amd64 4.2.0+ds-1 [203 kB] Get:132 http://deb.debian.org/debian forky/main amd64 libwebp7 amd64 1.6.0-0.1 [349 kB] Get:133 http://deb.debian.org/debian forky/main amd64 libtiff6 amd64 4.7.2-1 [383 kB] Get:134 http://deb.debian.org/debian forky/main amd64 libwebpdemux2 amd64 1.6.0-0.1 [114 kB] Get:135 http://deb.debian.org/debian forky/main amd64 libwebpmux3 amd64 1.6.0-0.1 [127 kB] Get:136 http://deb.debian.org/debian forky/main amd64 libxau6 amd64 1:1.0.11-1+b2 [20.7 kB] Get:137 http://deb.debian.org/debian forky/main amd64 libxdmcp6 amd64 1:1.1.5-2+b1 [28.2 kB] Get:138 http://deb.debian.org/debian forky/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB] Get:139 http://deb.debian.org/debian forky/main amd64 libx11-data all 2:1.8.13-1 [346 kB] Get:140 http://deb.debian.org/debian forky/main amd64 libx11-6 amd64 2:1.8.13-1 [829 kB] Get:141 http://deb.debian.org/debian forky/main amd64 libxext6 amd64 2:1.3.4-1+b4 [50.7 kB] Get:142 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.15.4+dfsg-1 [683 kB] Get:143 http://deb.debian.org/debian forky/main amd64 imagemagick-7-common all 8:7.1.2.31+dfsg1-1 [73.6 kB] Get:144 http://deb.debian.org/debian forky/main amd64 libmagickcore-7.q16-10 amd64 8:7.1.2.31+dfsg1-1 [1960 kB] Get:145 http://deb.debian.org/debian forky/main amd64 libmagickwand-7.q16-10 amd64 8:7.1.2.31+dfsg1-1 [365 kB] Get:146 http://deb.debian.org/debian forky/main amd64 libacl1 amd64 2.4.0-1 [37.1 kB] Get:147 http://deb.debian.org/debian forky/main amd64 libattr1 amd64 1:2.6.0-1 [24.7 kB] Get:148 http://deb.debian.org/debian forky/main amd64 libcap2 amd64 1:2.78-1+b1 [28.8 kB] Get:149 http://deb.debian.org/debian forky/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-11+b1 [709 kB] Get:150 http://deb.debian.org/debian forky/main amd64 libsqlite3-0 amd64 3.53.4-2 [974 kB] Get:151 http://deb.debian.org/debian forky/main amd64 liblastlog2-2 amd64 2.42.4-1 [25.0 kB] Get:152 http://deb.debian.org/debian forky/main amd64 libmd0 amd64 1.3.0-1 [45.4 kB] Get:153 http://deb.debian.org/debian forky/main amd64 login.defs all 1:4.20.3-1 [224 kB] Get:154 http://deb.debian.org/debian forky/main amd64 mawk amd64 1.3.4.20260302-2 [145 kB] Get:155 http://deb.debian.org/debian forky/main amd64 libbsd0 amd64 0.12.2-3 [132 kB] Get:156 http://deb.debian.org/debian forky/main amd64 libsemanage-common all 3.11-1 [7148 B] Get:157 http://deb.debian.org/debian forky/main amd64 libsepol2 amd64 3.11-1 [307 kB] Get:158 http://deb.debian.org/debian forky/main amd64 libsemanage2 amd64 3.11-1+b1 [97.0 kB] Get:159 http://deb.debian.org/debian forky/main amd64 passwd amd64 1:4.20.3-1 [1298 kB] Get:160 http://deb.debian.org/debian forky/main amd64 tzdata all 2026e-1 [262 kB] Get:161 http://deb.debian.org/debian forky/main amd64 libproc2-1 amd64 2:4.0.7-1 [73.0 kB] Get:162 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.7-1 [989 kB] Get:163 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-4 [74.8 kB] Get:164 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:165 http://deb.debian.org/debian forky/main amd64 openssl amd64 3.6.5-1 [1554 kB] Get:166 http://deb.debian.org/debian forky/main amd64 ca-certificates all 20260816 [134 kB] Get:167 http://deb.debian.org/debian forky/main amd64 perl-modules-5.42 all 5.42.3-1 [3213 kB] Get:168 http://deb.debian.org/debian forky/main amd64 libgdbm6t64 amd64 1.26-1+b2 [77.7 kB] Get:169 http://deb.debian.org/debian forky/main amd64 libgdbm-compat4t64 amd64 1.26-1+b2 [52.0 kB] Get:170 http://deb.debian.org/debian forky/main amd64 libperl5.42 amd64 5.42.3-1 [4272 kB] Get:171 http://deb.debian.org/debian forky/main amd64 perl amd64 5.42.3-1 [266 kB] Get:172 http://deb.debian.org/debian forky/main amd64 libtext-wrapi18n-perl all 0.06-11 [7788 B] Get:173 http://deb.debian.org/debian forky/main amd64 ucf all 3.0056 [47.1 kB] Get:174 http://deb.debian.org/debian forky/main amd64 comerr-dev amd64 2.1-1.47.4-1+b2 [51.2 kB] Get:175 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.4-1+b2 [19.5 kB] Get:176 http://deb.debian.org/debian forky/main amd64 fontconfig amd64 2.17.1-5 [191 kB] Get:177 http://deb.debian.org/debian forky/main amd64 libnghttp3-dev amd64 1.17.0-1 [96.3 kB] Get:178 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.17.0-1 [68.1 kB] Get:179 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.24.0-1 [145 kB] Get:180 http://deb.debian.org/debian forky/main amd64 libkrb5-dev amd64 1.22.1-3 [14.0 kB] Get:181 http://deb.debian.org/debian forky/main amd64 krb5-multidev amd64 1.22.1-3 [125 kB] Get:182 http://deb.debian.org/debian forky/main amd64 libgssrpc4t64 amd64 1.22.1-3 [58.3 kB] Get:183 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:184 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.22.1-3 [79.0 kB] Get:185 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.22.1-3 [137 kB] Get:186 http://deb.debian.org/debian forky/main amd64 libkdb5-10t64 amd64 1.22.1-3 [41.3 kB] Get:187 http://deb.debian.org/debian forky/main amd64 libkadm5srv-mit12 amd64 1.22.1-3 [54.1 kB] Get:188 http://deb.debian.org/debian forky/main amd64 libkadm5clnt-mit12 amd64 1.22.1-3 [40.3 kB] Get:189 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.22.1-3 [31.1 kB] Get:190 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.22.1-3 [335 kB] Get:191 http://deb.debian.org/debian forky/main amd64 libldap-dev amd64 2.6.14+dfsg-2 [321 kB] Get:192 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-11 [17.2 kB] Get:193 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-11 [55.2 kB] Get:194 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.14+dfsg-2 [200 kB] Get:195 http://deb.debian.org/debian forky/main amd64 libpkgconf7 amd64 2.5.1-4 [47.8 kB] Get:196 http://deb.debian.org/debian forky/main amd64 pkgconf-bin amd64 2.5.1-4 [35.9 kB] Get:197 http://deb.debian.org/debian forky/main amd64 pkgconf amd64 2.5.1-4 [33.6 kB] Get:198 http://deb.debian.org/debian forky/main amd64 libnghttp2-dev amd64 1.70.0-1 [131 kB] Get:199 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.70.0-1 [92.7 kB] Get:200 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-gnutls8 amd64 1.24.0-1 [23.9 kB] Get:201 http://deb.debian.org/debian forky/main amd64 libunistring-dev amd64 1.4.2-1 [651 kB] Get:202 http://deb.debian.org/debian forky/main amd64 libpsl-dev amd64 0.23.3-1 [30.1 kB] Get:203 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.23.3-1 [61.7 kB] Get:204 http://deb.debian.org/debian forky/main amd64 libssh2-1-dev amd64 1.11.1-6 [402 kB] Get:205 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-6 [253 kB] Get:206 http://deb.debian.org/debian forky/main amd64 libcurl4-gnutls amd64 8.22.0-1 [457 kB] Get:207 http://deb.debian.org/debian forky/main amd64 libcurl3t64-gnutls amd64 8.22.0-1 [17.8 kB] Get:208 http://deb.debian.org/debian forky/main amd64 liberror-perl all 0.17030-1 [26.9 kB] Get:209 http://deb.debian.org/debian forky/main amd64 git-man all 1:2.53.0-1 [2326 kB] Get:210 http://deb.debian.org/debian forky/main amd64 git amd64 1:2.53.0-1 [9410 kB] Get:211 http://deb.debian.org/debian forky/main amd64 hdf5-helpers amd64 2.2.0+repack-5 [27.6 kB] Get:212 http://deb.debian.org/debian forky/main amd64 libaec-dev amd64 1.1.7-1 [25.2 kB] Get:213 http://deb.debian.org/debian forky/main amd64 libaec0 amd64 1.1.7-1 [22.3 kB] Get:214 http://deb.debian.org/debian forky/main amd64 libsz2 amd64 1.1.7-1 [18.7 kB] Get:215 http://deb.debian.org/debian forky/main amd64 libblas3 amd64 3.12.1-8 [206 kB] Get:216 http://deb.debian.org/debian forky/main amd64 libsnappy1v5 amd64 1.3.1-3 [32.1 kB] Get:217 http://deb.debian.org/debian forky/main amd64 libblosc1 amd64 1.21.5+ds-2+b2 [48.0 kB] Get:218 http://deb.debian.org/debian forky/main amd64 libpixman-1-0 amd64 0.46.4-1+b2 [259 kB] Get:219 http://deb.debian.org/debian forky/main amd64 libxcb-render0 amd64 1.17.0-2+b2 [115 kB] Get:220 http://deb.debian.org/debian forky/main amd64 libxcb-shm0 amd64 1.17.0-2+b2 [105 kB] Get:221 http://deb.debian.org/debian forky/main amd64 libxrender1 amd64 1:0.9.12-1+b2 [27.7 kB] Get:222 http://deb.debian.org/debian forky/main amd64 libcairo2 amd64 1.18.4-3+b1 [543 kB] Get:223 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl0 amd64 1.24.0-1 [26.5 kB] Get:224 http://deb.debian.org/debian forky/main amd64 libcurl4-openssl-dev amd64 8.22.0-1 [594 kB] Get:225 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.22.0-1 [462 kB] Get:226 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl-dev amd64 1.24.0-1 [27.5 kB] Get:227 http://deb.debian.org/debian forky/main amd64 libngtcp2-dev amd64 1.24.0-1 [204 kB] Get:228 http://deb.debian.org/debian forky/main amd64 librtmp-dev amd64 2.6-1 [69.7 kB] Get:229 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.6-1 [60.3 kB] Get:230 http://deb.debian.org/debian forky/main amd64 libdatrie1 amd64 0.2.14-2 [39.1 kB] Get:231 http://deb.debian.org/debian forky/main amd64 libfribidi0 amd64 1.0.16-5+b1 [26.2 kB] Get:232 http://deb.debian.org/debian forky/main amd64 libgraphite2-3 amd64 1.3.15-2 [75.8 kB] Get:233 http://deb.debian.org/debian forky/main amd64 libharfbuzz0b amd64 12.3.2-2+b2 [513 kB] Get:234 http://deb.debian.org/debian forky/main amd64 libhdf5-320 amd64 2.2.0+repack-5 [2177 kB] Get:235 http://deb.debian.org/debian forky/main amd64 libhdf5-cpp-320 amd64 2.2.0+repack-5 [144 kB] Get:236 http://deb.debian.org/debian forky/main amd64 libhdf5-fortran-320 amd64 2.2.0+repack-5 [123 kB] Get:237 http://deb.debian.org/debian forky/main amd64 libhdf5-hl-320 amd64 2.2.0+repack-5 [82.0 kB] Get:238 http://deb.debian.org/debian forky/main amd64 libhdf5-hl-fortran-320 amd64 2.2.0+repack-5 [50.1 kB] Get:239 http://deb.debian.org/debian forky/main amd64 libhdf5-hl-cpp-320 amd64 2.2.0+repack-5 [27.4 kB] Get:240 http://deb.debian.org/debian forky/main amd64 libjpeg-dev amd64 1:3.1.3-4 [78.8 kB] Get:241 http://deb.debian.org/debian forky/main amd64 libhdf5-dev amd64 2.2.0+repack-5 [4248 kB] Get:242 http://deb.debian.org/debian forky/main amd64 libhnswlib-dev all 0.9.0-2 [23.9 kB] Get:243 http://deb.debian.org/debian forky/main amd64 x11-common all 1:7.7+26 [217 kB] Get:244 http://deb.debian.org/debian forky/main amd64 libice6 amd64 2:1.1.1-1+b2 [66.8 kB] Get:245 http://deb.debian.org/debian forky/main amd64 libicu78 amd64 78.3-2 [10.0 MB] Get:246 http://deb.debian.org/debian forky/main amd64 liblapack3 amd64 3.12.1-8 [2548 kB] Get:247 http://deb.debian.org/debian forky/main amd64 libmagick++-7.q16-5 amd64 8:7.1.2.31+dfsg1-1 [195 kB] Get:248 http://deb.debian.org/debian forky/main amd64 libpangocairo-1.0-0 amd64 1.58.2-1 [35.3 kB] Get:249 http://deb.debian.org/debian forky/main amd64 libpangoft2-1.0-0 amd64 1.58.2-1 [56.0 kB] Get:250 http://deb.debian.org/debian forky/main amd64 libthai-data all 0.1.30-3 [172 kB] Get:251 http://deb.debian.org/debian forky/main amd64 libthai0 amd64 0.1.30-3 [51.7 kB] Get:252 http://deb.debian.org/debian forky/main amd64 libpango-1.0-0 amd64 1.58.2-1 [233 kB] Get:253 http://deb.debian.org/debian forky/main amd64 libpaper2 amd64 2.2.5-0.4 [16.6 kB] Get:254 http://deb.debian.org/debian forky/main amd64 libpaper-utils amd64 2.2.5-0.4 [15.8 kB] Get:255 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:256 http://deb.debian.org/debian forky/main amd64 libsm6 amd64 2:1.2.6-1+b2 [37.9 kB] Get:257 http://deb.debian.org/debian forky/main amd64 libtcl8.6 amd64 8.6.18+dfsg-1 [1053 kB] Get:258 http://deb.debian.org/debian forky/main amd64 libtirpc-common all 1.3.7+ds-1 [10.0 kB] Get:259 http://deb.debian.org/debian forky/main amd64 libtirpc3t64 amd64 1.3.7+ds-1 [82.9 kB] Get:260 http://deb.debian.org/debian forky/main amd64 libxft2 amd64 2.3.6-1+b5 [54.8 kB] Get:261 http://deb.debian.org/debian forky/main amd64 libxss1 amd64 1:1.2.3-1+b4 [17.0 kB] Get:262 http://deb.debian.org/debian forky/main amd64 libtk8.6 amd64 8.6.18-1 [801 kB] Get:263 http://deb.debian.org/debian forky/main amd64 libxt6t64 amd64 1:1.2.1-1.3+b2 [191 kB] Get:264 http://deb.debian.org/debian forky/main amd64 r-cran-cli amd64 3.6.6-1 [1391 kB] Get:265 http://deb.debian.org/debian forky/main amd64 r-cran-glue amd64 1.8.1-2 [172 kB] Get:266 http://deb.debian.org/debian forky/main amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] Get:267 http://deb.debian.org/debian forky/main amd64 r-cran-vctrs amd64 0.7.3-2 [1983 kB] Get:268 http://deb.debian.org/debian forky/main amd64 r-cran-magick amd64 2.9.1+dfsg-3 [514 kB] Get:269 http://deb.debian.org/debian forky/main amd64 r-cran-rlang amd64 1.3.0-1 [1742 kB] Get:270 http://deb.debian.org/debian forky/main amd64 r-base-core amd64 4.6.1-6 [28.4 MB] Get:271 http://deb.debian.org/debian forky/main amd64 r-cran-rcpp amd64 1.1.2-1 [2168 kB] Get:272 http://deb.debian.org/debian forky/main amd64 r-cran-magrittr amd64 2.0.5-1 [209 kB] Get:273 http://deb.debian.org/debian forky/main amd64 r-cran-curl amd64 8.0.0+dfsg-1 [228 kB] Get:274 http://deb.debian.org/debian forky/main amd64 zip amd64 3.0-16 [239 kB] Get:275 http://deb.debian.org/debian forky/main amd64 unzip amd64 6.0-31 [176 kB] Get:276 http://deb.debian.org/debian forky/main amd64 r-cran-littler amd64 0.3.23-1 [96.5 kB] Get:277 http://deb.debian.org/debian forky/main amd64 littler all 0.3.23-1 [17.2 kB] Get:278 http://deb.debian.org/debian forky/main amd64 r-cran-matrixstats amd64 1.5.0-3 [503 kB] Get:279 http://deb.debian.org/debian forky/main amd64 r-pkg-team-core-architecture amd64 20260707 [4764 B] Get:280 http://deb.debian.org/debian forky/main amd64 r-bioc-matrixgenerics all 1.24.0-1 [444 kB] Get:281 http://deb.debian.org/debian forky/main amd64 r-bioc-graph amd64 1.90.0-1 [1285 kB] Get:282 http://deb.debian.org/debian forky/main amd64 r-cran-blob all 1.3.0-1 [54.1 kB] Get:283 http://deb.debian.org/debian forky/main amd64 r-cran-dbi all 1.3.0-1 [871 kB] Get:284 http://deb.debian.org/debian forky/main amd64 r-cran-generics all 0.1.4-1 [84.2 kB] Get:285 http://deb.debian.org/debian forky/main amd64 r-cran-utf8 amd64 1.2.6-2 [138 kB] Get:286 http://deb.debian.org/debian forky/main amd64 r-cran-pillar all 1.11.1+dfsg-1 [457 kB] Get:287 http://deb.debian.org/debian forky/main amd64 r-cran-r6 all 2.6.1-2 [106 kB] Get:288 http://deb.debian.org/debian forky/main amd64 r-cran-pkgconfig all 2.0.3-3 [21.7 kB] Get:289 http://deb.debian.org/debian forky/main amd64 r-cran-tibble amd64 3.3.1+dfsg-2 [452 kB] Get:290 http://deb.debian.org/debian forky/main amd64 r-cran-withr all 3.0.3+dfsg-1 [229 kB] Get:291 http://deb.debian.org/debian forky/main amd64 r-cran-tidyselect amd64 1.2.1+dfsg-3 [224 kB] Get:292 http://deb.debian.org/debian forky/main amd64 r-cran-dplyr amd64 1.2.1-2 [1574 kB] Get:293 http://deb.debian.org/debian forky/main amd64 r-cran-purrr amd64 1.2.2-1 [575 kB] Get:294 http://deb.debian.org/debian forky/main amd64 r-cran-stringi amd64 1.8.9-1 [906 kB] Get:295 http://deb.debian.org/debian forky/main amd64 r-cran-stringr all 1.6.0-1 [323 kB] Get:296 http://deb.debian.org/debian forky/main amd64 r-cran-cpp11 all 0.5.5-1 [236 kB] Get:297 http://deb.debian.org/debian forky/main amd64 r-cran-tidyr amd64 1.3.2-3 [1163 kB] Get:298 http://deb.debian.org/debian forky/main amd64 r-cran-dbplyr all 2.6.0+dfsg-1 [1345 kB] Get:299 http://deb.debian.org/debian forky/main amd64 r-cran-bit amd64 4.6.0+dfsg-3 [452 kB] Get:300 http://deb.debian.org/debian forky/main amd64 r-cran-bit64 amd64 4.8.6-1 [592 kB] Get:301 http://deb.debian.org/debian forky/main amd64 r-cran-fastmap amd64 1.2.0-3 [79.8 kB] Get:302 http://deb.debian.org/debian forky/main amd64 r-cran-cachem amd64 1.1.0-3 [79.6 kB] Get:303 http://deb.debian.org/debian forky/main amd64 r-cran-memoise all 2.0.1-2 [54.3 kB] Get:304 http://deb.debian.org/debian forky/main amd64 r-cran-rsqlite amd64 2.4.6-1 [1236 kB] Get:305 http://deb.debian.org/debian forky/main amd64 r-cran-filelock amd64 1.0.3-2 [27.9 kB] Get:306 http://deb.debian.org/debian forky/main amd64 r-cran-sys amd64 3.4.3-3 [44.4 kB] Get:307 http://deb.debian.org/debian forky/main amd64 r-cran-askpass amd64 1.2.1-3 [24.5 kB] Get:308 http://deb.debian.org/debian forky/main amd64 r-cran-openssl amd64 2.4.2+dfsg-1 [402 kB] Get:309 http://deb.debian.org/debian forky/main amd64 r-cran-httr2 all 1.3.0-1 [996 kB] Get:310 http://deb.debian.org/debian forky/main amd64 r-bioc-biocfilecache all 3.2.0+dfsg-1 [310 kB] Get:311 http://deb.debian.org/debian forky/main amd64 r-bioc-biobase amd64 2.72.0-1 [2320 kB] Get:312 http://deb.debian.org/debian forky/main amd64 r-bioc-assorthead all 1.6.4+dfsg-1 [419 kB] Get:313 http://deb.debian.org/debian forky/main amd64 r-bioc-biocgenerics all 0.58.1-2 [649 kB] Get:314 http://deb.debian.org/debian forky/main amd64 r-bioc-genomeinfodbdata all 1.2.15-2 [13.5 MB] Get:315 http://deb.debian.org/debian forky/main amd64 r-cran-bh all 1.90.0-1 [6220 B] Get:316 http://deb.debian.org/debian forky/main amd64 r-cran-crayon all 1.5.3-2 [164 kB] Get:317 http://deb.debian.org/debian forky/main amd64 r-cran-fansi amd64 1.0.7-2 [798 kB] Get:318 http://deb.debian.org/debian forky/main amd64 r-cran-formatr all 1.14-3 [152 kB] Get:319 http://deb.debian.org/debian forky/main amd64 r-cran-lambda.r all 1.2.4-3 [119 kB] Get:320 http://deb.debian.org/debian forky/main amd64 r-cran-futile.options all 1.0.1-4 [20.6 kB] Get:321 http://deb.debian.org/debian forky/main amd64 r-cran-futile.logger all 1.4.9-2 [121 kB] Get:322 http://deb.debian.org/debian forky/main amd64 r-cran-jsonlite amd64 2.0.0+dfsg-2 [447 kB] Get:323 http://deb.debian.org/debian forky/main amd64 r-cran-mime amd64 0.13-2 [47.5 kB] Get:324 http://deb.debian.org/debian forky/main amd64 r-cran-httr all 1.4.9+dfsg-1 [470 kB] Get:325 http://deb.debian.org/debian forky/main amd64 r-cran-lattice amd64 0.23-1-1 [1457 kB] Get:326 http://deb.debian.org/debian forky/main amd64 r-cran-matrix amd64 1.7-6-1 [4192 kB] Get:327 http://deb.debian.org/debian forky/main amd64 r-cran-irlba amd64 2.3.7-1 [451 kB] Get:328 http://deb.debian.org/debian forky/main amd64 r-cran-plogr all 0.2.0-4 [15.4 kB] Get:329 http://deb.debian.org/debian forky/main amd64 r-cran-png amd64 0.1-9-1 [42.9 kB] Get:330 http://deb.debian.org/debian forky/main amd64 r-cran-rjson amd64 0.2.23-1+b1 [101 kB] Get:331 http://deb.debian.org/debian forky/main amd64 r-cran-rsvd all 1.0.5-2 [3595 kB] Get:332 http://deb.debian.org/debian forky/main amd64 r-cran-xml amd64 3.99-0.25-1 [1737 kB] Get:333 http://deb.debian.org/debian forky/main amd64 r-cran-xtable all 1:1.8-8-1 [737 kB] Preconfiguring packages ... Fetched 236 MB in 2s (153 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 40214 files and directories currently installed.) Preparing to unpack .../rpcsvc-proto_1.4.4-1_amd64.deb ... Unpacking rpcsvc-proto (1.4.4-1) over (1.4.3-1) ... Preparing to unpack .../libc-dev-bin_2.43-7_amd64.deb ... Unpacking libc-dev-bin (2.43-7) over (2.41-12+deb13u4) ... Preparing to unpack .../libcrypt1_1%3a4.5.2+20251210-1_amd64.deb ... 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Setting up libpangocairo-1.0-0:amd64 (1.58.2-1) ... Setting up libkadm5clnt-mit12:amd64 (1.22.1-3) ... Setting up libgnutls28-dev:amd64 (3.8.13-1) ... Setting up libcurl4-gnutls:amd64 (8.22.0-1) ... Setting up libcurl4t64:amd64 (8.22.0-1) ... Setting up libkdb5-10t64:amd64 (1.22.1-3) ... Setting up libjpeg-dev:amd64 (1:3.1.3-4) ... Setting up libcurl3t64-gnutls:amd64 (8.22.0-1) ... Setting up libhdf5-hl-fortran-320:amd64 (2.2.0+repack-5) ... Setting up r-base-core (4.6.1-6) ... Installing new version of config file /etc/R/Makeconf ... Installing new version of config file /etc/R/Renviron.site ... Replacing config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.3-2) ... Setting up librtmp-dev:amd64 (2.6-1) ... Setting up libhdf5-hl-cpp-320:amd64 (2.2.0+repack-5) ... Setting up r-cran-futile.options (1.0.1-4) ... Setting up git (1:2.53.0-1) ... Setting up r-cran-lattice (0.23-1-1) ... Setting up libssh2-1-dev:amd64 (1.11.1-6) ... Setting up r-cran-formatr (1.14-3) ... Setting up r-cran-xml (3.99-0.25-1) ... Setting up libkadm5srv-mit12:amd64 (1.22.1-3) ... Setting up r-cran-rjson (0.2.23-1+b1) ... Setting up r-cran-r6 (2.6.1-2) ... Setting up r-cran-magrittr (2.0.5-1) ... Setting up r-cran-filelock (1.0.3-2) ... Setting up krb5-multidev:amd64 (1.22.1-3) ... Setting up r-cran-littler (0.3.23-1) ... Setting up r-cran-bh (1.90.0-1) ... Setting up r-cran-rcpp (1.1.2-1) ... Setting up r-cran-curl (8.0.0+dfsg-1) ... Setting up r-cran-rlang (1.3.0-1) ... Setting up r-cran-matrixstats (1.5.0-3) ... Setting up littler (0.3.23-1) ... Setting up r-cran-sys (3.4.3-3) ... Setting up r-cran-plogr (0.2.0-4) ... Setting up r-cran-withr (3.0.3+dfsg-1) ... Setting up r-cran-mime (0.13-2) ... Setting up r-cran-generics (0.1.4-1) ... Setting up r-cran-lambda.r (1.2.4-3) ... Setting up r-cran-dbi (1.3.0-1) ... Setting up r-cran-fansi (1.0.7-2) ... Setting up r-cran-glue (1.8.1-2) ... Setting up r-cran-bit (4.6.0+dfsg-3) ... Setting up r-cran-xtable (1:1.8-8-1) ... Setting up r-cran-cli (3.6.6-1) ... Setting up r-cran-lifecycle (1.0.5+dfsg-1) ... Setting up r-cran-bit64 (4.8.6-1) ... Setting up r-cran-askpass (1.2.1-3) ... Setting up r-cran-fastmap (1.2.0-3) ... Setting up r-cran-png (0.1-9-1) ... Setting up libkrb5-dev:amd64 (1.22.1-3) ... Setting up r-cran-jsonlite (2.0.0+dfsg-2) ... Setting up r-cran-pkgconfig (2.0.3-3) ... Setting up r-cran-utf8 (1.2.6-2) ... Setting up r-cran-stringi (1.8.9-1) ... Setting up libcurl4-openssl-dev:amd64 (8.22.0-1) ... Setting up r-cran-cpp11 (0.5.5-1) ... Setting up r-cran-futile.logger (1.4.9-2) ... Setting up libhdf5-dev (2.2.0+repack-5) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/cmake/hdf5_serial to provide /usr/lib/x86_64-linux-gnu/cmake/hdf5 (hdf5.cmake) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5_serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up r-cran-matrix (1.7-6-1) ... Setting up r-cran-irlba (2.3.7-1) ... Setting up r-cran-cachem (1.1.0-3) ... Setting up r-cran-vctrs (0.7.3-2) ... Setting up r-cran-pillar (1.11.1+dfsg-1) ... Setting up r-cran-openssl (2.4.2+dfsg-1) ... Setting up r-bioc-biocgenerics (0.58.1-2) ... Setting up r-cran-stringr (1.6.0-1) ... Setting up r-bioc-matrixgenerics (1.24.0-1) ... Setting up r-cran-tibble (3.3.1+dfsg-2) ... Setting up r-cran-tidyselect (1.2.1+dfsg-3) ... Setting up r-cran-rsvd (1.0.5-2) ... Setting up r-cran-httr2 (1.3.0-1) ... Setting up r-bioc-biobase (2.72.0-1) ... Setting up r-cran-httr (1.4.9+dfsg-1) ... Setting up r-cran-memoise (2.0.1-2) ... Setting up r-cran-purrr (1.2.2-1) ... Setting up r-cran-blob (1.3.0-1) ... Setting up r-cran-dplyr (1.2.1-2) ... Setting up r-bioc-assorthead (1.6.4+dfsg-1) ... Setting up r-cran-rsqlite (2.4.6-1) ... Setting up r-bioc-genomeinfodbdata (1.2.15-2) ... Setting up r-bioc-graph (1.90.0-1) ... Setting up r-cran-tidyr (1.3.2-3) ... Setting up r-cran-dbplyr (2.6.0+dfsg-1) ... Setting up r-bioc-biocfilecache (3.2.0+dfsg-1) ... Setting up libheif-plugin-dav1d:amd64 (1.23.6-2) ... Setting up libheif-plugin-libde265:amd64 (1.23.6-2) ... Setting up libheif1:amd64 (1.23.6-2) ... Setting up libmagickcore-7.q16-10:amd64 (8:7.1.2.31+dfsg1-1) ... Setting up libmagickwand-7.q16-10:amd64 (8:7.1.2.31+dfsg1-1) ... Setting up libmagick++-7.q16-5:amd64 (8:7.1.2.31+dfsg1-1) ... Setting up r-cran-magick (2.9.1+dfsg-3) ... Processing triggers for debianutils (5.24) ... Processing triggers for libc-bin (2.43-7) ... Processing triggers for ca-certificates (20260816) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m10.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-get', '-yf', 'dist-upgrade'] 1m10.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m12.3s DUMP: ee223aaed4e8424378e85c242ea625b5 - 1m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-gsva'] 1m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-gsva'] 1m12.6s INFO: apt-cache does not know about any of the requested packages 1m12.6s INFO: Running scripts post_distupgrade 1m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_distupgrade_exceptions'] 1m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_distupgrade_exceptions'] 1m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_distupgrade_zz_backports'] 1m12.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_distupgrade_zz_backports'] 1m12.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpveszhioq'] 1m14.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpveszhioq'] 1m14.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpveszhioq to sid 1m14.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 1m14.8s INFO: Running scripts pre_distupgrade 1m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_distupgrade_exceptions'] 1m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_distupgrade_exceptions'] 1m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-get', 'update'] 1m18.1s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [193 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.8 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7746 kB] Fetched 18.7 MB in 2s (8351 kB/s) Reading package lists... 1m18.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-get', 'update'] 1m18.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-get', '-yf', 'dist-upgrade'] 1m26.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: comerr-dev fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono git git-man hdf5-helpers imagemagick-7-common krb5-multidev libaec-dev libaec0 libasan8 libatomic1 libblas3 libblosc1 libboost-dev libboost-regex1.92-dev libboost-regex1.92.0 libboost1.92-dev libbrotli-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcom-err2 libcrypt-dev libcurl3t64-gnutls libcurl4-gnutls libcurl4-openssl-dev libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 liberror-perl libevent-2.1-7t64 libexpat1 libffi8 libfftw3-double3 libfontconfig1 libfreetype6 libfribidi0 libgcc-14-dev libgcc-16-dev libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls28-dev libgnutls30t64 libgomp1 libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libharfbuzz0b libhdf5-310 libhdf5-320 libhdf5-cpp-310 libhdf5-cpp-320 libhdf5-dev libhdf5-fortran-310 libhdf5-fortran-320 libhdf5-hl-310 libhdf5-hl-320 libhdf5-hl-cpp-310 libhdf5-hl-cpp-320 libhdf5-hl-fortran-310 libhdf5-hl-fortran-320 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhnswlib-dev libhwasan0 libice6 libicu76 libicu78 libidn2-dev libitm1 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 liblapack3 liblcms2-2 libldap-dev libldap2 liblerc4 liblqr-1-0 liblsan0 libltdl7 libmagick++-7.q16-5 libmagickcore-7.q16-10 libmagickwand-7.q16-10 libncursesw6 libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl-dev libngtcp2-crypto-ossl0 libngtcp2-dev libopenjp2-7 libp11-kit-dev libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpkgconf3 libpkgconf7 libpng16-16t64 libproc2-0 libproc2-1 libpsl-dev libpsl5t64 libquadmath0 libraw23t64 libraw25 libreadline8t64 librtmp-dev librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsnappy1v5 libssh2-1-dev libssh2-1t64 libssl-dev libstdc++-14-dev libstdc++-16-dev libsz2 libtasn1-6 libtasn1-6-dev libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunbound8 libunistring-dev libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxml2-16 libxrender1 libxss1 libxt6t64 libzstd-dev linux-libc-dev littler nettle-dev pkgconf pkgconf-bin procps r-base-core r-bioc-assorthead r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-genomeinfodbdata r-bioc-graph r-bioc-matrixgenerics r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-dplyr r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-httr r-cran-httr2 r-cran-irlba r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magick r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-purrr r-cran-r6 r-cran-rcpp r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-rsvd r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xml r-cran-xtable r-pkg-team-core-architecture readline-common rpcsvc-proto ucf unzip x11-common xdg-utils zip zlib1g-dev Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libboost1.90-dev The following NEW packages will be installed: libboost-regex1.92-dev libboost-regex1.92.0 libboost1.92-dev The following packages will be upgraded: gcc-14-base git git-man imagemagick-7-common libaudit-common libaudit1 libboost-dev libcurl3t64-gnutls libcurl4-gnutls libcurl4-openssl-dev libcurl4t64 libgcc-14-dev libhdf5-310 libhdf5-cpp-310 libhdf5-fortran-310 libhdf5-hl-310 libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libicu76 libmagick++-7.q16-5 libmagickcore-7.q16-10 libmagickwand-7.q16-10 libsasl2-2 libsasl2-modules-db libstdc++-14-dev libsystemd0 libudev1 libxml2 r-base-core 29 upgraded, 3 newly installed, 1 to remove and 0 not upgraded. Need to get 75.2 MB of archives. After this operation, 11.1 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libboost-regex1.92.0 amd64 1.92.0-4 [320 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libboost-regex1.92-dev amd64 1.92.0-4 [339 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libboost-dev amd64 1.92.0.1 [3260 B] Get:4 http://deb.debian.org/debian sid/main amd64 libboost1.92-dev amd64 1.92.0-4 [11.6 MB] Get:5 http://deb.debian.org/debian sid/main amd64 imagemagick-7-common all 8:7.1.2.33+dfsg1-1 [75.3 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libmagickcore-7.q16-10 amd64 8:7.1.2.33+dfsg1-1 [1969 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libmagickwand-7.q16-10 amd64 8:7.1.2.33+dfsg1-1 [368 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:4.2.1-1 [13.3 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.2.1-1 [59.6 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 262.1-1 [512 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 262.1-1 [149 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libstdc++-14-dev amd64 14.4.0-3 [2684 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libgcc-14-dev amd64 14.4.0-3 [2674 kB] Get:14 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.4.0-3 [35.5 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libcurl4-gnutls amd64 8.23.0-1 [463 kB] Get:16 http://deb.debian.org/debian sid/main amd64 git amd64 1:2.55.0-1 [9658 kB] Get:17 http://deb.debian.org/debian sid/main amd64 git-man all 1:2.55.0-1 [2381 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libcurl3t64-gnutls amd64 8.23.0-1 [18.0 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libcurl4-openssl-dev amd64 8.23.0-1 [602 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.23.0-1 [469 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libhdf5-310 amd64 1.14.6+repack-2+b1 [1357 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libhdf5-cpp-310 amd64 1.14.6+repack-2+b1 [130 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libhdf5-fortran-310 amd64 1.14.6+repack-2+b1 [107 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-310 amd64 1.14.6+repack-2+b1 [63.3 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-cpp-310 amd64 1.14.6+repack-2+b1 [18.5 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-fortran-310 amd64 1.14.6+repack-2+b1 [38.1 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libicu76 amd64 76.1-4+b1 [9752 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libmagick++-7.q16-5 amd64 8:7.1.2.33+dfsg1-1 [197 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-12 [18.4 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-12 [59.4 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-2.4 [709 kB] Get:32 http://deb.debian.org/debian sid/main amd64 r-base-core amd64 4.6.1-9 [28.4 MB] Fetched 75.2 MB in 0s (239 MB/s) Selecting previously unselected package libboost-regex1.92.0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 44204 files and directories currently installed.) Preparing to unpack .../libboost-regex1.92.0_1.92.0-4_amd64.deb ... Unpacking libboost-regex1.92.0:amd64 (1.92.0-4) ... Selecting previously unselected package libboost-regex1.92-dev:amd64. Preparing to unpack .../libboost-regex1.92-dev_1.92.0-4_amd64.deb ... Unpacking libboost-regex1.92-dev:amd64 (1.92.0-4) ... Preparing to unpack .../libboost-dev_1.92.0.1_amd64.deb ... Unpacking libboost-dev:amd64 (1.92.0.1) over (1.90.0.2+nmu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 44223 files and directories currently installed.) Removing libboost1.90-dev:amd64 (1.90.0-6.1+b1) ... Selecting previously unselected package libboost1.92-dev:amd64. (Reading database ... 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Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-12) ... Setting up libcurl4-openssl-dev:amd64 (8.23.0-1) ... Setting up r-base-core (4.6.1-9) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-12) ... Setting up libmagickcore-7.q16-10:amd64 (8:7.1.2.33+dfsg1-1) ... Setting up libhdf5-310:amd64 (1.14.6+repack-2+b1) ... Setting up git-man (1:2.55.0-1) ... Setting up libicu76:amd64 (76.1-4+b1) ... Setting up libgcc-14-dev:amd64 (14.4.0-3) ... Setting up libhdf5-fortran-310:amd64 (1.14.6+repack-2+b1) ... Setting up libstdc++-14-dev:amd64 (14.4.0-3) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.4) ... Setting up libhdf5-cpp-310:amd64 (1.14.6+repack-2+b1) ... Setting up libhdf5-hl-310:amd64 (1.14.6+repack-2+b1) ... Setting up libmagickwand-7.q16-10:amd64 (8:7.1.2.33+dfsg1-1) ... Setting up libmagick++-7.q16-5:amd64 (8:7.1.2.33+dfsg1-1) ... Setting up git (1:2.55.0-1) ... Setting up libhdf5-hl-cpp-310:amd64 (1.14.6+repack-2+b1) ... Setting up libhdf5-hl-fortran-310:amd64 (1.14.6+repack-2+b1) ... Setting up libboost-regex1.92-dev:amd64 (1.92.0-4) ... Setting up libboost1.92-dev:amd64 (1.92.0-4) ... Setting up libboost-dev:amd64 (1.92.0.1) ... Processing triggers for libc-bin (2.43-7) ... 1m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-get', '-yf', 'dist-upgrade'] 1m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m27.0s DUMP: f701bb64dec6d8a8cbfad85ba09bbb3a - 1m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-gsva'] 1m27.3s DUMP: Package: r-bioc-gsva Version: 2.6.12+dfsg-1 Installed-Size: 7463 Maintainer: Debian R Packages Maintainers Architecture: amd64 Depends: r-pkg-team-core-architecture, r-api-4.0, r-api-bioc-3.23, r-bioc-biocgenerics, r-bioc-matrixgenerics, r-bioc-s4vectors, r-bioc-s4arrays, r-bioc-hdf5array, r-bioc-sparsearray, r-bioc-delayedarray, r-bioc-iranges, r-bioc-biobase, r-bioc-summarizedexperiment, r-bioc-gseabase, r-cran-matrix (>= 1.5-0), r-bioc-delayedmatrixstats, r-bioc-biocparallel, r-bioc-singlecellexperiment, r-bioc-spatialexperiment, r-bioc-sparsematrixstats, r-cran-cli, r-cran-memuse, libc6 (>= 2.4) Description-en: Gene Set Variation Analysis for Microarray and RNA-Seq Data Gene Set Variation Analysis (GSVA) is a non-parametric, unsupervised method for estimating variation of gene set enrichment through the samples of a expression data set. GSVA performs a change in coordinate systems, transforming the data from a gene by sample matrix to a gene-set by sample matrix, thereby allowing the evaluation of pathway enrichment for each sample. This new matrix of GSVA enrichment scores facilitates applying standard analytical methods like functional enrichment, survival analysis, clustering, CNV-pathway analysis or cross-tissue pathway analysis, in a pathway-centric manner. Description-md5: 3da7e33cee269ad5132ade65e324473d Homepage: https://bioconductor.org/packages/GSVA/ Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-gsva/r-bioc-gsva_2.6.12+dfsg-1_amd64.deb Size: 3762712 MD5sum: 41e175152a22b0ede020dc9ff278d4d7 SHA256: 44e65836b82657e45a4d947403a1b817bfaba33b22d76b3b2ed60bc54bd12f8d 1m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-gsva'] 1m27.3s INFO: apt-cache knows about the following packages: r-bioc-gsva 1m27.3s INFO: Running scripts pre_install 1m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_database-server'] 1m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_database-server'] 1m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_exceptions'] 1m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_exceptions'] 1m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_extras'] 1m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_extras'] 1m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_foreign_architecture'] 1m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_foreign_architecture'] 1m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-cache', 'policy'] 1m27.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-cache', 'policy'] 1m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-cache', 'policy', 'r-bioc-gsva'] 1m27.4s DUMP: r-bioc-gsva: Installed: (none) Candidate: 2.6.12+dfsg-1 Version table: 2.6.12+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 1m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-cache', 'policy', 'r-bioc-gsva'] 1m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-get', '-y', 'install', 'r-bioc-gsva'] 1m36.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages were automatically installed and are no longer required: comerr-dev hdf5-helpers krb5-multidev libaec-dev libaec0 libbrotli-dev libcrypt-dev libcurl3t64-gnutls libcurl4-openssl-dev libevent-2.1-7t64 libgcc-14-dev libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls28-dev libgssrpc4t64 libhdf5-310 libhdf5-320 libhdf5-cpp-310 libhdf5-cpp-320 libhdf5-dev libhdf5-fortran-310 libhdf5-fortran-320 libhdf5-hl-310 libhdf5-hl-320 libhdf5-hl-cpp-310 libhdf5-hl-cpp-320 libhdf5-hl-fortran-310 libhdf5-hl-fortran-320 libhnswlib-dev libicu76 libidn2-dev libjpeg-dev libjpeg62-turbo-dev libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkrb5-dev libldap-dev libnghttp2-dev libnghttp3-dev libngtcp2-crypto-ossl-dev libngtcp2-dev libp11-kit-dev libpkgconf3 libpkgconf7 libproc2-0 libpsl-dev libraw23t64 librtmp-dev librtmp1 libssh2-1-dev libssl-dev libstdc++-14-dev libsz2 libtasn1-6-dev libunbound8 libunistring-dev libxml2 libzstd-dev nettle-dev pkgconf pkgconf-bin r-bioc-assorthead r-bioc-genomeinfodbdata r-cran-fansi r-cran-irlba r-cran-plogr r-cran-rsvd rpcsvc-proto zlib1g-dev Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu build-essential bzip2 cmake cpp cpp-16 cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu dpkg-dev g++ g++-16 g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-16 gcc-16-x86-64-linux-gnu gcc-x86-64-linux-gnu libarchive13t64 libbinutils libcc1-0 libctf-nobfd0 libctf0 libdpkg-perl libgprofng0 libisl23 libjansson4 libjsoncpp26 libmpc3 libmpfr6 librhash1 libsframe3 libuv1t64 make patch r-bioc-annotate r-bioc-annotationdbi r-bioc-biocmake r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-dir.expiry r-bioc-genomicranges r-bioc-gseabase r-bioc-h5mread r-bioc-hdf5array r-bioc-iranges r-bioc-keggrest r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-seqinfo r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-spatialexperiment r-bioc-summarizedexperiment r-bioc-xvector r-cran-memuse xz-utils Suggested packages: binutils-doc gprofng-gui binutils-gold bzip2-doc cmake-doc cmake-format elpa-cmake-mode ninja-build cpp-doc gcc-16-locales cpp-16-doc debian-keyring debian-tag2upload-keyring g++-multilib g++-16-multilib gcc-16-doc gcc-multilib manpages-dev autoconf automake libtool flex bison gdb gcc-doc gcc-16-multilib gdb-x86-64-linux-gnu lrzip sq | sqop | rsop | gosop | hopenpgp-tools | pgpainless-cli | gpg-sq | gnupg bzr make-doc ed diffutils-doc r-bioc-genefilter r-bioc-go.db r-bioc-org.hs.eg.db r-cran-runit r-bioc-biocstyle r-cran-knitr r-cran-testthat r-cran-rmarkdown r-cran-microbenchmark r-cran-profmem r-cran-markdown r-bioc-scrnaseq r-cran-rtsne r-bioc-dropletutils Recommended packages: fakeroot sq | sqop | rsop | gosop | hopenpgp-tools | pgpainless-cli | gpg-sq | gnupg libalgorithm-merge-perl libfile-fcntllock-perl liblocale-gettext-perl The following NEW packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu build-essential bzip2 cmake cpp cpp-16 cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu dpkg-dev g++ g++-16 g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-16 gcc-16-x86-64-linux-gnu gcc-x86-64-linux-gnu libarchive13t64 libbinutils libcc1-0 libctf-nobfd0 libctf0 libdpkg-perl libgprofng0 libisl23 libjansson4 libjsoncpp26 libmpc3 libmpfr6 librhash1 libsframe3 libuv1t64 make patch r-bioc-annotate r-bioc-annotationdbi r-bioc-biocmake r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-dir.expiry r-bioc-genomicranges r-bioc-gseabase r-bioc-gsva r-bioc-h5mread r-bioc-hdf5array r-bioc-iranges r-bioc-keggrest r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-seqinfo r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-spatialexperiment r-bioc-summarizedexperiment r-bioc-xvector r-cran-memuse xz-utils 0 upgraded, 65 newly installed, 0 to remove and 0 not upgraded. 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libisl23 amd64 0.28-1 [667 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libmpfr6 amd64 4.2.2-3 [729 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libmpc3 amd64 1.3.1-3 [52.2 kB] Get:15 http://deb.debian.org/debian sid/main amd64 cpp-16-x86-64-linux-gnu amd64 16.2.0-3 [13.7 MB] Get:16 http://deb.debian.org/debian sid/main amd64 cpp-16 amd64 16.2.0-3 [1272 B] Get:17 http://deb.debian.org/debian sid/main amd64 cpp-x86-64-linux-gnu amd64 4:16.1.0-3 [4472 B] Get:18 http://deb.debian.org/debian sid/main amd64 cpp amd64 4:16.1.0-3 [1568 B] Get:19 http://deb.debian.org/debian sid/main amd64 libcc1-0 amd64 16.2.0-3 [46.1 kB] Get:20 http://deb.debian.org/debian sid/main amd64 gcc-16-x86-64-linux-gnu amd64 16.2.0-3 [26.6 MB] Get:21 http://deb.debian.org/debian sid/main amd64 gcc-16 amd64 16.2.0-3 [538 kB] Get:22 http://deb.debian.org/debian sid/main amd64 gcc-x86-64-linux-gnu amd64 4:16.1.0-3 [1432 B] Get:23 http://deb.debian.org/debian sid/main amd64 gcc amd64 4:16.1.0-3 [5148 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amd64 librhash1 amd64 1.4.6-1.1+b1 [135 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libuv1t64 amd64 1.53.0-1 [162 kB] Get:37 http://deb.debian.org/debian sid/main amd64 cmake amd64 4.3.4-1 [16.2 MB] Get:38 http://deb.debian.org/debian sid/main amd64 r-bioc-s4vectors amd64 0.50.3+dfsg-1 [1851 kB] Get:39 http://deb.debian.org/debian sid/main amd64 r-bioc-iranges amd64 2.46.0-1 [2336 kB] Get:40 http://deb.debian.org/debian sid/main amd64 r-bioc-xvector amd64 0.52.0-1 [629 kB] Get:41 http://deb.debian.org/debian sid/main amd64 r-bioc-seqinfo all 1.2.0+dfsg-1 [390 kB] Get:42 http://deb.debian.org/debian sid/main amd64 r-bioc-biostrings amd64 2.80.2+dfsg-1 [13.3 MB] Get:43 http://deb.debian.org/debian sid/main amd64 r-bioc-keggrest all 1.52.2+dfsg-1 [189 kB] Get:44 http://deb.debian.org/debian sid/main amd64 r-bioc-annotationdbi all 1.74.0-1 [4484 kB] Get:45 http://deb.debian.org/debian sid/main amd64 r-bioc-annotate all 1.90.0+dfsg-1 [1861 kB] Get:46 http://deb.debian.org/debian sid/main amd64 r-bioc-dir.expiry all 1.20.0+dfsg-1 [32.5 kB] Get:47 http://deb.debian.org/debian sid/main amd64 r-bioc-biocmake all 1.4.0+dfsg-1 [36.6 kB] Get:48 http://deb.debian.org/debian sid/main amd64 r-bioc-biocparallel amd64 1.46.0-1 [971 kB] Get:49 http://deb.debian.org/debian sid/main amd64 r-bioc-s4arrays amd64 1.12.1+dfsg-1 [846 kB] Get:50 http://deb.debian.org/debian sid/main amd64 r-bioc-sparsearray amd64 1.12.3+dfsg-1 [1386 kB] Get:51 http://deb.debian.org/debian sid/main amd64 r-bioc-delayedarray all 0.38.2+dfsg-1 [1999 kB] Get:52 http://deb.debian.org/debian sid/main amd64 r-bioc-sparsematrixstats amd64 1.24.0+dfsg-1 [946 kB] Get:53 http://deb.debian.org/debian sid/main amd64 r-bioc-delayedmatrixstats all 1.34.0+ds-1 [505 kB] Get:54 http://deb.debian.org/debian sid/main amd64 r-bioc-genomicranges all 1.64.0+dfsg-1 [2087 kB] Get:55 http://deb.debian.org/debian sid/main amd64 r-bioc-gseabase all 1.74.0+ds-1 [720 kB] Get:56 http://deb.debian.org/debian sid/main amd64 r-bioc-rhdf5lib amd64 2.0.0+dfsg2-1 [2719 kB] Get:57 http://deb.debian.org/debian sid/main amd64 r-bioc-rhdf5filters amd64 1.24.1+dfsg-1 [142 kB] Get:58 http://deb.debian.org/debian sid/main amd64 r-bioc-rhdf5 amd64 2.56.1+dfsg-1 [2507 kB] Get:59 http://deb.debian.org/debian sid/main amd64 r-bioc-h5mread amd64 1.4.1+dfsg-1 [4351 kB] Get:60 http://deb.debian.org/debian sid/main amd64 r-bioc-hdf5array all 1.40.0-1 [8882 kB] Get:61 http://deb.debian.org/debian sid/main amd64 r-bioc-summarizedexperiment all 1.42.0+dfsg-1 [1119 kB] Get:62 http://deb.debian.org/debian sid/main amd64 r-bioc-singlecellexperiment all 1.34.0+ds-1 [837 kB] Get:63 http://deb.debian.org/debian sid/main amd64 r-bioc-spatialexperiment all 1.22.0+ds-1 [965 kB] Get:64 http://deb.debian.org/debian sid/main amd64 r-cran-memuse amd64 4.2-3-1 [642 kB] Get:65 http://deb.debian.org/debian sid/main amd64 r-bioc-gsva amd64 2.6.12+dfsg-1 [3763 kB] Fetched 144 MB in 1s (231 MB/s) Selecting previously unselected package bzip2. 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Selecting previously unselected package r-bioc-dir.expiry. Preparing to unpack .../45-r-bioc-dir.expiry_1.20.0+dfsg-1_all.deb ... Unpacking r-bioc-dir.expiry (1.20.0+dfsg-1) ... Selecting previously unselected package r-bioc-biocmake. Preparing to unpack .../46-r-bioc-biocmake_1.4.0+dfsg-1_all.deb ... Unpacking r-bioc-biocmake (1.4.0+dfsg-1) ... Selecting previously unselected package r-bioc-biocparallel. Preparing to unpack .../47-r-bioc-biocparallel_1.46.0-1_amd64.deb ... Unpacking r-bioc-biocparallel (1.46.0-1) ... Selecting previously unselected package r-bioc-s4arrays. Preparing to unpack .../48-r-bioc-s4arrays_1.12.1+dfsg-1_amd64.deb ... Unpacking r-bioc-s4arrays (1.12.1+dfsg-1) ... Selecting previously unselected package r-bioc-sparsearray. Preparing to unpack .../49-r-bioc-sparsearray_1.12.3+dfsg-1_amd64.deb ... Unpacking r-bioc-sparsearray (1.12.3+dfsg-1) ... Selecting previously unselected package r-bioc-delayedarray. Preparing to unpack .../50-r-bioc-delayedarray_0.38.2+dfsg-1_all.deb ... Unpacking r-bioc-delayedarray (0.38.2+dfsg-1) ... Selecting previously unselected package r-bioc-sparsematrixstats. Preparing to unpack .../51-r-bioc-sparsematrixstats_1.24.0+dfsg-1_amd64.deb ... Unpacking r-bioc-sparsematrixstats (1.24.0+dfsg-1) ... Selecting previously unselected package r-bioc-delayedmatrixstats. Preparing to unpack .../52-r-bioc-delayedmatrixstats_1.34.0+ds-1_all.deb ... Unpacking r-bioc-delayedmatrixstats (1.34.0+ds-1) ... Selecting previously unselected package r-bioc-genomicranges. Preparing to unpack .../53-r-bioc-genomicranges_1.64.0+dfsg-1_all.deb ... Unpacking r-bioc-genomicranges (1.64.0+dfsg-1) ... Selecting previously unselected package r-bioc-gseabase. Preparing to unpack .../54-r-bioc-gseabase_1.74.0+ds-1_all.deb ... Unpacking r-bioc-gseabase (1.74.0+ds-1) ... Selecting previously unselected package r-bioc-rhdf5lib. Preparing to unpack .../55-r-bioc-rhdf5lib_2.0.0+dfsg2-1_amd64.deb ... Unpacking r-bioc-rhdf5lib (2.0.0+dfsg2-1) ... Selecting previously unselected package r-bioc-rhdf5filters. Preparing to unpack .../56-r-bioc-rhdf5filters_1.24.1+dfsg-1_amd64.deb ... Unpacking r-bioc-rhdf5filters (1.24.1+dfsg-1) ... Selecting previously unselected package r-bioc-rhdf5. Preparing to unpack .../57-r-bioc-rhdf5_2.56.1+dfsg-1_amd64.deb ... Unpacking r-bioc-rhdf5 (2.56.1+dfsg-1) ... Selecting previously unselected package r-bioc-h5mread. Preparing to unpack .../58-r-bioc-h5mread_1.4.1+dfsg-1_amd64.deb ... Unpacking r-bioc-h5mread (1.4.1+dfsg-1) ... Selecting previously unselected package r-bioc-hdf5array. Preparing to unpack .../59-r-bioc-hdf5array_1.40.0-1_all.deb ... Unpacking r-bioc-hdf5array (1.40.0-1) ... Selecting previously unselected package r-bioc-summarizedexperiment. Preparing to unpack .../60-r-bioc-summarizedexperiment_1.42.0+dfsg-1_all.deb ... Unpacking r-bioc-summarizedexperiment (1.42.0+dfsg-1) ... Selecting previously unselected package r-bioc-singlecellexperiment. Preparing to unpack .../61-r-bioc-singlecellexperiment_1.34.0+ds-1_all.deb ... Unpacking r-bioc-singlecellexperiment (1.34.0+ds-1) ... Selecting previously unselected package r-bioc-spatialexperiment. Preparing to unpack .../62-r-bioc-spatialexperiment_1.22.0+ds-1_all.deb ... Unpacking r-bioc-spatialexperiment (1.22.0+ds-1) ... Selecting previously unselected package r-cran-memuse. Preparing to unpack .../63-r-cran-memuse_4.2-3-1_amd64.deb ... Unpacking r-cran-memuse (4.2-3-1) ... Selecting previously unselected package r-bioc-gsva. Preparing to unpack .../64-r-bioc-gsva_2.6.12+dfsg-1_amd64.deb ... Unpacking r-bioc-gsva (2.6.12+dfsg-1) ... Setting up r-bioc-biocparallel (1.46.0-1) ... Setting up libuv1t64:amd64 (1.53.0-1) ... Setting up binutils-common:amd64 (2.47-6) ... Setting up libsframe3:amd64 (2.47-6) ... Setting up libctf-nobfd0:amd64 (2.47-6) ... Setting up bzip2 (1.0.8-6+b2) ... Setting up libjansson4:amd64 (2.15.1-1) ... Setting up make (4.4.1-3) ... Setting up libmpfr6:amd64 (4.2.2-3) ... Setting up libjsoncpp26:amd64 (1.9.8-2) ... Setting up r-bioc-s4vectors (0.50.3+dfsg-1) ... Setting up xz-utils (5.8.4-1) ... update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode Setting up libmpc3:amd64 (1.3.1-3) ... Setting up patch (2.8-2) ... Setting up libdpkg-perl (1.23.11) ... Setting up librhash1:amd64 (1.4.6-1.1+b1) ... Setting up r-bioc-iranges (2.46.0-1) ... Setting up libbinutils:amd64 (2.47-6) ... Setting up r-bioc-dir.expiry (1.20.0+dfsg-1) ... Setting up libisl23:amd64 (0.28-1) ... Setting up libarchive13t64:amd64 (3.8.9-1) ... Setting up r-bioc-sparsematrixstats (1.24.0+dfsg-1) ... Setting up libcc1-0:amd64 (16.2.0-3) ... Setting up r-cran-memuse (4.2-3-1) ... Setting up libctf0:amd64 (2.47-6) ... Setting up r-bioc-s4arrays (1.12.1+dfsg-1) ... Setting up r-bioc-seqinfo (1.2.0+dfsg-1) ... Setting up libgprofng0:amd64 (2.47-6) ... Setting up r-bioc-xvector (0.52.0-1) ... Setting up cmake (4.3.4-1) ... Setting up cpp-16-x86-64-linux-gnu (16.2.0-3) ... Setting up binutils-x86-64-linux-gnu (2.47-6) ... Setting up cpp-x86-64-linux-gnu (4:16.1.0-3) ... Setting up r-bioc-biocmake (1.4.0+dfsg-1) ... Setting up r-bioc-sparsearray (1.12.3+dfsg-1) ... Setting up r-bioc-genomicranges (1.64.0+dfsg-1) ... Setting up r-bioc-biostrings (2.80.2+dfsg-1) ... Setting up r-bioc-rhdf5lib (2.0.0+dfsg2-1) ... Setting up gcc-16-x86-64-linux-gnu (16.2.0-3) ... Setting up binutils (2.47-6) ... Setting up dpkg-dev (1.23.11) ... Setting up g++-16-x86-64-linux-gnu (16.2.0-3) ... Setting up cpp-16 (16.2.0-3) ... Setting up r-bioc-delayedarray (0.38.2+dfsg-1) ... Setting up r-bioc-summarizedexperiment (1.42.0+dfsg-1) ... Setting up gcc-x86-64-linux-gnu (4:16.1.0-3) ... Setting up r-bioc-keggrest (1.52.2+dfsg-1) ... Setting up r-bioc-annotationdbi (1.74.0-1) ... Setting up gcc-16 (16.2.0-3) ... Setting up r-bioc-delayedmatrixstats (1.34.0+ds-1) ... Setting up r-bioc-annotate (1.90.0+dfsg-1) ... Setting up g++-16 (16.2.0-3) ... Setting up cpp (4:16.1.0-3) ... Setting up g++-x86-64-linux-gnu (4:16.1.0-3) ... Setting up r-bioc-singlecellexperiment (1.34.0+ds-1) ... Setting up r-bioc-gseabase (1.74.0+ds-1) ... Setting up gcc (4:16.1.0-3) ... Setting up g++ (4:16.1.0-3) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up build-essential (12.12) ... Setting up r-bioc-spatialexperiment (1.22.0+ds-1) ... Setting up r-bioc-rhdf5filters (1.24.1+dfsg-1) ... Setting up r-bioc-rhdf5 (2.56.1+dfsg-1) ... Setting up r-bioc-h5mread (1.4.1+dfsg-1) ... Setting up r-bioc-hdf5array (1.40.0-1) ... Setting up r-bioc-gsva (2.6.12+dfsg-1) ... Processing triggers for libc-bin (2.43-7) ... 1m36.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-get', '-y', 'install', 'r-bioc-gsva'] 1m36.4s INFO: Running scripts post_install 1m36.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_install_exceptions'] 1m36.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_install_exceptions'] 1m36.4s INFO: Running scripts post_distupgrade 1m36.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m36.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m36.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_distupgrade_exceptions'] 1m36.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_distupgrade_exceptions'] 1m36.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m36.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m36.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m36.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m36.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_distupgrade_zz_backports'] 1m36.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_distupgrade_zz_backports'] 1m36.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpveszhioq'] 1m38.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpveszhioq'] 1m38.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpveszhioq'] 1m40.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpveszhioq'] 1m40.8s INFO: Running scripts pre_install 1m40.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_database-server'] 1m40.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_database-server'] 1m40.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_exceptions'] 1m40.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_exceptions'] 1m40.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_extras'] 1m40.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_extras'] 1m40.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_foreign_architecture'] 1m40.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_foreign_architecture'] 1m40.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m40.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m40.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-cache', 'policy'] 1m40.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m40.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-cache', 'policy'] 1m40.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-cache', 'policy', 'r-bioc-gsva'] 1m41.0s DUMP: r-bioc-gsva: Installed: 2.6.12+dfsg-1 Candidate: 2.6.12+dfsg-1 Version table: *** 2.6.12+dfsg-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 1m41.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-cache', 'policy', 'r-bioc-gsva'] 1m41.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-get', '-y', 'install', 'r-bioc-gsva=2.6.12+dfsg-1'] 1m41.8s DUMP: Reading package lists... Building dependency tree... Reading state information... r-bioc-gsva is already the newest version (2.6.12+dfsg-1). Solving dependencies... The following packages were automatically installed and are no longer required: comerr-dev hdf5-helpers krb5-multidev libaec-dev libaec0 libbrotli-dev libcrypt-dev libcurl3t64-gnutls libcurl4-openssl-dev libevent-2.1-7t64 libgcc-14-dev libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls28-dev libgssrpc4t64 libhdf5-310 libhdf5-320 libhdf5-cpp-310 libhdf5-cpp-320 libhdf5-dev libhdf5-fortran-310 libhdf5-fortran-320 libhdf5-hl-310 libhdf5-hl-320 libhdf5-hl-cpp-310 libhdf5-hl-cpp-320 libhdf5-hl-fortran-310 libhdf5-hl-fortran-320 libhnswlib-dev libicu76 libidn2-dev libjpeg-dev libjpeg62-turbo-dev libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkrb5-dev libldap-dev libnghttp2-dev libnghttp3-dev libngtcp2-crypto-ossl-dev libngtcp2-dev libp11-kit-dev libpkgconf3 libpkgconf7 libproc2-0 libpsl-dev libraw23t64 librtmp-dev librtmp1 libssh2-1-dev libssl-dev libstdc++-14-dev libsz2 libtasn1-6-dev libunbound8 libunistring-dev libxml2 libzstd-dev nettle-dev pkgconf pkgconf-bin r-bioc-assorthead r-bioc-genomeinfodbdata r-cran-fansi r-cran-irlba r-cran-plogr r-cran-rsvd rpcsvc-proto zlib1g-dev Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-get', '-y', 'install', 'r-bioc-gsva=2.6.12+dfsg-1'] 1m41.8s INFO: Running scripts post_install 1m41.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_install_exceptions'] 1m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_install_exceptions'] 1m41.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpveszhioq'] 1m44.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpveszhioq'] 1m46.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpveszhioq', '-ac', '--ignore-obsolete'] 1m51.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpveszhioq', '-ac', '--ignore-obsolete'] 1m51.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m51.1s DUMP: 0.17.5+b5 1m51.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 1m51.1s INFO: Running adequate version 0.17.5+b5 now. 1m51.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'r-bioc-gsva'] 1m51.1s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'r-bioc-gsva'] 1m51.1s INFO: Running scripts pre_remove 1m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m51.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 1m51.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m51.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 1m51.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_remove_exceptions'] 2m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/pre_remove_exceptions'] 2m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m1.8s DUMP: install ok installed apt apt 3.3.3 install ok installed base-files base-files 14.2 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-4 install ok installed binutils binutils 2.47-6 install ok installed binutils-common:amd64 binutils-common 2.47-6 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.47-6 install ok installed bsdutils bsdutils 1:2.42.4-1 install ok installed build-essential build-essential 12.12 install ok installed bzip2 bzip2 1.0.8-6+b2 install ok installed ca-certificates ca-certificates 20260816 install ok installed cmake cmake 4.3.4-1 install ok installed comerr-dev:amd64 comerr-dev 2.1-1.47.4-1+b2 install ok installed coreutils coreutils 9.10-1 install ok installed cpp cpp 4:16.1.0-3 install ok installed cpp-16 cpp-16 16.2.0-3 install ok installed cpp-16-x86-64-linux-gnu cpp-16-x86-64-linux-gnu 16.2.0-3 install ok installed cpp-x86-64-linux-gnu cpp-x86-64-linux-gnu 4:16.1.0-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.24 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.11 install ok installed dpkg-dev dpkg-dev 1.23.11 install ok installed findutils findutils 4.11.0-3 install ok installed fontconfig fontconfig 2.17.1-5 install ok installed fontconfig-config fontconfig-config 2.17.1-5 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-9 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-9 install ok installed g++ g++ 4:16.1.0-3 install ok installed g++-16 g++-16 16.2.0-3 install ok installed g++-16-x86-64-linux-gnu g++-16-x86-64-linux-gnu 16.2.0-3 install ok installed g++-x86-64-linux-gnu g++-x86-64-linux-gnu 4:16.1.0-3 install ok installed gcc gcc 4:16.1.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.4.0-3 install ok installed gcc-16 gcc-16 16.2.0-3 install ok installed gcc-16-base:amd64 gcc-16-base 16.2.0-3 install ok installed gcc-16-x86-64-linux-gnu gcc-16-x86-64-linux-gnu 16.2.0-3 install ok installed gcc-x86-64-linux-gnu gcc-x86-64-linux-gnu 4:16.1.0-3 install ok installed git git 1:2.55.0-1 install ok installed git-man git-man 1:2.55.0-1 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.14-1 install ok installed hdf5-helpers hdf5-helpers 2.2.0+repack-5 install ok installed hostname hostname 3.25 install ok installed imagemagick-7-common imagemagick-7-common 8:7.1.2.33+dfsg1-1 install ok installed init-system-helpers init-system-helpers 1.69+nmu3 install ok installed krb5-multidev:amd64 krb5-multidev 1.22.1-3 install ok installed libacl1:amd64 libacl1 2.4.0-1 install ok installed libaec-dev:amd64 libaec-dev 1.1.7-1 install ok installed libaec0:amd64 libaec0 1.1.7-1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.3.3 install ok installed libarchive13t64:amd64 libarchive13t64 3.8.9-1 install ok installed libasan8:amd64 libasan8 16.2.0-3 install ok installed libatomic1:amd64 libatomic1 16.2.0-3 install ok installed libattr1:amd64 libattr1 1:2.6.0-1 install ok installed libaudit-common libaudit-common 1:4.2.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.2.1-1 install ok installed libbinutils:amd64 libbinutils 2.47-6 install ok installed libblas3:amd64 libblas3 3.12.1-8 install ok installed libblkid1:amd64 libblkid1 2.42.4-1 install ok installed libblosc1:amd64 libblosc1 1.21.5+ds-2+b2 install ok installed libboost-dev:amd64 libboost-dev 1.92.0.1 install ok installed libboost-regex1.92-dev:amd64 libboost-regex1.92-dev 1.92.0-4 install ok installed libboost-regex1.92.0:amd64 libboost-regex1.92.0 1.92.0-4 install ok installed libboost1.92-dev:amd64 libboost1.92-dev 1.92.0-4 install ok installed libbrotli-dev:amd64 libbrotli-dev 1.2.0-4+b1 install ok installed libbrotli1:amd64 libbrotli1 1.2.0-4+b1 install ok installed libbsd0:amd64 libbsd0 0.12.2-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b2 install ok installed libc-bin libc-bin 2.43-7 install ok installed libc-dev-bin libc-dev-bin 2.43-7 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.43-7 install ok installed libc6:amd64 libc6 2.43-7 install ok installed libc6-dev:amd64 libc6-dev 2.43-7 install ok installed libcairo2:amd64 libcairo2 1.18.4-3+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.6-1 install ok installed libcap2:amd64 libcap2 1:2.78-1+b1 install ok installed libcc1-0:amd64 libcc1-0 16.2.0-3 install ok installed libcom-err2:amd64 libcom-err2 1.47.4-1+b2 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.5.2+20251210-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.2+20251210-1 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.47-6 install ok installed libctf0:amd64 libctf0 2.47-6 install ok installed libcurl3t64-gnutls:amd64 libcurl3t64-gnutls 8.23.0-1 install ok installed libcurl4-gnutls:amd64 libcurl4-gnutls 8.23.0-1 install ok installed libcurl4-openssl-dev:amd64 libcurl4-openssl-dev 8.23.0-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.23.0-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.14-2 install ok installed libdav1d7:amd64 libdav1d7 1.5.4-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11+b1 install ok installed libde265-0:amd64 libde265-0 1.1.3-1+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.283 install ok installed libdeflate0:amd64 libdeflate0 1.25-1 install ok installed libdpkg-perl libdpkg-perl 1.23.11 install ok installed liberror-perl liberror-perl 0.17030-1 install ok installed libevent-2.1-7t64:amd64 libevent-2.1-7t64 2.1.13-stable-1 install ok installed libexpat1:amd64 libexpat1 2.9.0-1 install ok installed libffi8:amd64 libffi8 3.8.0-2 install ok installed libfftw3-double3:amd64 libfftw3-double3 3.3.11-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.17.1-5 install ok installed libfreetype6:amd64 libfreetype6 2.14.3+dfsg-3 install ok installed libfribidi0:amd64 libfribidi0 1.0.16-5+b1 install ok installed libgcc-14-dev:amd64 libgcc-14-dev 14.4.0-3 install ok installed libgcc-16-dev:amd64 libgcc-16-dev 16.2.0-3 install ok installed libgcc-s1:amd64 libgcc-s1 16.2.0-3 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1+b2 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1+b2 install ok installed libgfortran5:amd64 libgfortran5 16.2.0-3 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.90.1-2 install ok installed libgmp-dev:amd64 libgmp-dev 2:6.3.0+dfsg-5+b2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b2 install ok installed libgmpxx4ldbl:amd64 libgmpxx4ldbl 2:6.3.0+dfsg-5+b2 install ok installed libgnutls-dane0t64:amd64 libgnutls-dane0t64 3.8.13-1 install ok installed libgnutls28-dev:amd64 libgnutls28-dev 3.8.13-1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.13-1 install ok installed libgomp1:amd64 libgomp1 16.2.0-3 install ok installed libgprofng0:amd64 libgprofng0 2.47-6 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.15-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.22.1-3 install ok installed libgssrpc4t64:amd64 libgssrpc4t64 1.22.1-3 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 12.3.2-2+b2 install ok installed libhdf5-310:amd64 libhdf5-310 1.14.6+repack-2+b1 install ok installed libhdf5-320:amd64 libhdf5-320 2.2.0+repack-5 install ok installed libhdf5-cpp-310:amd64 libhdf5-cpp-310 1.14.6+repack-2+b1 install ok installed libhdf5-cpp-320:amd64 libhdf5-cpp-320 2.2.0+repack-5 install ok installed libhdf5-dev libhdf5-dev 2.2.0+repack-5 install ok installed libhdf5-fortran-310:amd64 libhdf5-fortran-310 1.14.6+repack-2+b1 install ok installed libhdf5-fortran-320:amd64 libhdf5-fortran-320 2.2.0+repack-5 install ok installed libhdf5-hl-310:amd64 libhdf5-hl-310 1.14.6+repack-2+b1 install ok installed libhdf5-hl-320:amd64 libhdf5-hl-320 2.2.0+repack-5 install ok installed libhdf5-hl-cpp-310:amd64 libhdf5-hl-cpp-310 1.14.6+repack-2+b1 install ok installed libhdf5-hl-cpp-320:amd64 libhdf5-hl-cpp-320 2.2.0+repack-5 install ok installed libhdf5-hl-fortran-310:amd64 libhdf5-hl-fortran-310 1.14.6+repack-2+b1 install ok installed libhdf5-hl-fortran-320:amd64 libhdf5-hl-fortran-320 2.2.0+repack-5 install ok installed libheif-plugin-dav1d:amd64 libheif-plugin-dav1d 1.23.6-2 install ok installed libheif-plugin-libde265:amd64 libheif-plugin-libde265 1.23.6-2 install ok installed libheif1:amd64 libheif1 1.23.6-2 install ok installed libhnswlib-dev libhnswlib-dev 0.9.0-2 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1+b1 install ok installed libhwasan0:amd64 libhwasan0 16.2.0-3 install ok installed libice6:amd64 libice6 2:1.1.1-1+b2 install ok installed libicu76:amd64 libicu76 76.1-4+b1 install ok installed libicu78:amd64 libicu78 78.3-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.8-5 install ok installed libidn2-dev:amd64 libidn2-dev 2.3.8-5 install ok installed libisl23:amd64 libisl23 0.28-1 install ok installed libitm1:amd64 libitm1 16.2.0-3 install ok installed libjansson4:amd64 libjansson4 2.15.1-1 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b3 install ok installed libjpeg-dev:amd64 libjpeg-dev 1:3.1.3-4 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:3.1.3-4 install ok installed libjpeg62-turbo-dev:amd64 libjpeg62-turbo-dev 1:3.1.3-4 install ok installed libjsoncpp26:amd64 libjsoncpp26 1.9.8-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.22.1-3 install ok installed libkadm5clnt-mit12:amd64 libkadm5clnt-mit12 1.22.1-3 install ok installed libkadm5srv-mit12:amd64 libkadm5srv-mit12 1.22.1-3 install ok installed libkdb5-10t64:amd64 libkdb5-10t64 1.22.1-3 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-6+b2 install ok installed libkrb5-3:amd64 libkrb5-3 1.22.1-3 install ok installed libkrb5-dev:amd64 libkrb5-dev 1.22.1-3 install ok installed libkrb5support0:amd64 libkrb5support0 1.22.1-3 install ok installed liblapack3:amd64 liblapack3 3.12.1-8 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.42.4-1 install ok installed liblcms2-2:amd64 liblcms2-2 2.19.1-1 install ok installed libldap-dev:amd64 libldap-dev 2.6.14+dfsg-2 install ok installed libldap2:amd64 libldap2 2.6.14+dfsg-2 install ok installed liblerc4:amd64 liblerc4 4.2.0+ds-1 install ok installed liblqr-1-0:amd64 liblqr-1-0 0.4.2-2.2+b1 install ok installed liblsan0:amd64 liblsan0 16.2.0-3 install ok installed libltdl7:amd64 libltdl7 2.6.2-3 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-10 install ok installed liblzma5:amd64 liblzma5 5.8.4-1 install ok installed libmagick++-7.q16-5:amd64 libmagick++-7.q16-5 8:7.1.2.33+dfsg1-1 install ok installed libmagickcore-7.q16-10:amd64 libmagickcore-7.q16-10 8:7.1.2.33+dfsg1-1 install ok installed libmagickwand-7.q16-10:amd64 libmagickwand-7.q16-10 8:7.1.2.33+dfsg1-1 install ok installed libmd0:amd64 libmd0 1.3.0-1 install ok installed libmount1:amd64 libmount1 2.42.4-1 install ok installed libmpc3:amd64 libmpc3 1.3.1-3 install ok installed libmpfr6:amd64 libmpfr6 4.2.2-3 install ok installed libncursesw6:amd64 libncursesw6 6.6+20260608-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.70.0-1 install ok installed libnghttp2-dev:amd64 libnghttp2-dev 1.70.0-1 install ok installed libnghttp3-9:amd64 libnghttp3-9 1.17.0-1 install ok installed libnghttp3-dev:amd64 libnghttp3-dev 1.17.0-1 install ok installed libngtcp2-16:amd64 libngtcp2-16 1.24.0-1 install ok installed libngtcp2-crypto-gnutls8:amd64 libngtcp2-crypto-gnutls8 1.24.0-1 install ok installed libngtcp2-crypto-ossl-dev:amd64 libngtcp2-crypto-ossl-dev 1.24.0-1 install ok installed libngtcp2-crypto-ossl0:amd64 libngtcp2-crypto-ossl0 1.24.0-1 install ok installed libngtcp2-dev:amd64 libngtcp2-dev 1.24.0-1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.4-1.1 install ok installed libp11-kit-dev:amd64 libp11-kit-dev 0.26.5-1 install ok installed libp11-kit0:amd64 libp11-kit0 0.26.5-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-8 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-8 install ok installed libpam-runtime libpam-runtime 1.7.0-8 install ok installed libpam0g:amd64 libpam0g 1.7.0-8 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.58.2-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.58.2-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.58.2-1 install ok installed libpaper-utils libpaper-utils 2.2.5-0.4 install ok installed libpaper2:amd64 libpaper2 2.2.5-0.4 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.48-3.1 install ok installed libperl5.42:amd64 libperl5.42 5.42.3-1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.46.4-1+b2 install ok installed libpkgconf3:amd64 libpkgconf3 1.8.1-4 install ok installed libpkgconf7:amd64 libpkgconf7 2.5.1-4 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.59-1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-9 install ok installed libproc2-1:amd64 libproc2-1 2:4.0.7-1 install ok installed libpsl-dev:amd64 libpsl-dev 0.23.3-1 install ok installed libpsl5t64:amd64 libpsl5t64 0.23.3-1 install ok installed libquadmath0:amd64 libquadmath0 16.2.0-3 install ok installed libraw23t64:amd64 libraw23t64 0.21.4-2+deb13u1 install ok installed libraw25:amd64 libraw25 0.22.1-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed librhash1:amd64 librhash1 1.4.6-1.1+b1 install ok installed librtmp-dev:amd64 librtmp-dev 2.6-1 install ok installed librtmp1:amd64 librtmp1 2.6-1 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-12 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-12 install ok installed libseccomp2:amd64 libseccomp2 2.6.1-1+b1 install ok installed libselinux1:amd64 libselinux1 3.11-2.1 install ok installed libsemanage-common libsemanage-common 3.11-1 install ok installed libsemanage2:amd64 libsemanage2 3.11-1+b1 install ok installed libsepol2:amd64 libsepol2 3.11-1 install ok installed libsframe3:amd64 libsframe3 2.47-6 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.6.0-0.1 install ok installed libsm6:amd64 libsm6 2:1.2.6-1+b2 install ok installed libsmartcols1:amd64 libsmartcols1 2.42.4-1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.3.1-3 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.53.4-2 install ok installed libssh2-1-dev:amd64 libssh2-1-dev 1.11.1-6 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.1-6 install ok installed libssl-dev:amd64 libssl-dev 3.6.5-1 install ok installed libssl3t64:amd64 libssl3t64 3.6.5-1 install ok installed libstdc++-14-dev:amd64 libstdc++-14-dev 14.4.0-3 install ok installed libstdc++-16-dev:amd64 libstdc++-16-dev 16.2.0-3 install ok installed libstdc++6:amd64 libstdc++6 16.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 262.1-1 install ok installed libsz2:amd64 libsz2 1.1.7-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.21.0-2+b1 install ok installed libtasn1-6-dev:amd64 libtasn1-6-dev 4.21.0-2+b1 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.18+dfsg-1 install ok installed libtext-charwidth-perl:amd64 libtext-charwidth-perl 0.04-12+b1 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-11 install ok installed libthai-data libthai-data 0.1.30-3 install ok installed libthai0:amd64 libthai0 0.1.30-3 install ok installed libtiff6:amd64 libtiff6 4.7.2-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20260608-2 install ok installed libtirpc-common libtirpc-common 1.3.7+ds-1 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.7+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.18-1 install ok installed libtsan2:amd64 libtsan2 16.2.0-3 install ok installed libubsan1:amd64 libubsan1 16.2.0-3 install ok installed libudev1:amd64 libudev1 262.1-1 install ok installed libunbound8:amd64 libunbound8 1.26.1-1 install ok installed libunistring-dev:amd64 libunistring-dev 1.4.2-1 install ok installed libunistring5:amd64 libunistring5 1.4.2-1 install ok installed libuuid1:amd64 libuuid1 2.42.4-1 install ok installed libuv1t64:amd64 libuv1t64 1.53.0-1 install ok installed libwebp7:amd64 libwebp7 1.6.0-0.1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.6.0-0.1 install ok installed libwebpmux3:amd64 libwebpmux3 1.6.0-0.1 install ok installed libx11-6:amd64 libx11-6 2:1.8.13-1 install ok installed libx11-data libx11-data 2:1.8.13-1 install ok installed libxau6:amd64 libxau6 1:1.0.11-1+b2 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2+b2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2+b2 install ok installed libxcb1:amd64 libxcb1 1.17.0-2+b2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.5-2+b1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b4 install ok installed libxft2:amd64 libxft2 2.3.6-1+b5 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg+really2.9.14-2.4 install ok installed libxml2-16:amd64 libxml2-16 2.15.4+dfsg-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.12-1+b2 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b4 install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.3+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b2 install ok installed libzstd-dev:amd64 libzstd-dev 1.5.7+dfsg-4 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-4 install ok installed linux-libc-dev linux-libc-dev 7.2.11-1 install ok installed littler littler 0.3.23-1 install ok installed login login 1:4.16.0-2+really2.42.4-1 install ok installed login.defs login.defs 1:4.20.3-1 install ok installed make make 4.4.1-3 install ok installed mawk mawk 1.3.4.20260302-2 install ok installed mount mount 2.42.4-1 install ok installed ncurses-base ncurses-base 6.6+20260608-2 install ok installed ncurses-bin ncurses-bin 6.6+20260608-2 install ok installed nettle-dev:amd64 nettle-dev 3.10.2-1+b1 install ok installed openssl openssl 3.6.5-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.6.5-1 install ok installed passwd passwd 1:4.20.3-1 install ok installed patch patch 2.8-2 install ok installed perl perl 5.42.3-1 install ok installed perl-base perl-base 5.42.3-1 install ok installed perl-modules-5.42 perl-modules-5.42 5.42.3-1 install ok installed pkgconf:amd64 pkgconf 2.5.1-4 install ok installed pkgconf-bin pkgconf-bin 2.5.1-4 install ok installed procps procps 2:4.0.7-1 install ok installed r-base-core r-base-core 4.6.1-9 install ok installed r-bioc-annotate r-bioc-annotate 1.90.0+dfsg-1 install ok installed r-bioc-annotationdbi r-bioc-annotationdbi 1.74.0-1 install ok installed r-bioc-assorthead r-bioc-assorthead 1.6.4+dfsg-1 install ok installed r-bioc-biobase r-bioc-biobase 2.72.0-1 install ok installed r-bioc-biocfilecache r-bioc-biocfilecache 3.2.0+dfsg-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.58.1-2 install ok installed r-bioc-biocmake r-bioc-biocmake 1.4.0+dfsg-1 install ok installed r-bioc-biocparallel r-bioc-biocparallel 1.46.0-1 install ok installed r-bioc-biostrings r-bioc-biostrings 2.80.2+dfsg-1 install ok installed r-bioc-delayedarray r-bioc-delayedarray 0.38.2+dfsg-1 install ok installed r-bioc-delayedmatrixstats r-bioc-delayedmatrixstats 1.34.0+ds-1 install ok installed r-bioc-dir.expiry r-bioc-dir.expiry 1.20.0+dfsg-1 install ok installed r-bioc-genomeinfodbdata r-bioc-genomeinfodbdata 1.2.15-2 install ok installed r-bioc-genomicranges r-bioc-genomicranges 1.64.0+dfsg-1 install ok installed r-bioc-graph r-bioc-graph 1.90.0-1 install ok installed r-bioc-gseabase r-bioc-gseabase 1.74.0+ds-1 install ok installed r-bioc-gsva r-bioc-gsva 2.6.12+dfsg-1 install ok installed r-bioc-h5mread r-bioc-h5mread 1.4.1+dfsg-1 install ok installed r-bioc-hdf5array r-bioc-hdf5array 1.40.0-1 install ok installed r-bioc-iranges r-bioc-iranges 2.46.0-1 install ok installed r-bioc-keggrest r-bioc-keggrest 1.52.2+dfsg-1 install ok installed r-bioc-matrixgenerics r-bioc-matrixgenerics 1.24.0-1 install ok installed r-bioc-rhdf5 r-bioc-rhdf5 2.56.1+dfsg-1 install ok installed r-bioc-rhdf5filters r-bioc-rhdf5filters 1.24.1+dfsg-1 install ok installed r-bioc-rhdf5lib r-bioc-rhdf5lib 2.0.0+dfsg2-1 install ok installed r-bioc-s4arrays r-bioc-s4arrays 1.12.1+dfsg-1 install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.50.3+dfsg-1 install ok installed r-bioc-seqinfo r-bioc-seqinfo 1.2.0+dfsg-1 install ok installed r-bioc-singlecellexperiment r-bioc-singlecellexperiment 1.34.0+ds-1 install ok installed r-bioc-sparsearray r-bioc-sparsearray 1.12.3+dfsg-1 install ok installed r-bioc-sparsematrixstats r-bioc-sparsematrixstats 1.24.0+dfsg-1 install ok installed r-bioc-spatialexperiment r-bioc-spatialexperiment 1.22.0+ds-1 install ok installed r-bioc-summarizedexperiment r-bioc-summarizedexperiment 1.42.0+dfsg-1 install ok installed r-bioc-xvector r-bioc-xvector 0.52.0-1 install ok installed r-cran-abind r-cran-abind 1.4-8-1 install ok installed r-cran-askpass r-cran-askpass 1.2.1-3 install ok installed r-cran-bh r-cran-bh 1.90.0-1 install ok installed r-cran-bit r-cran-bit 4.6.0+dfsg-3 install ok installed r-cran-bit64 r-cran-bit64 4.8.6-1 install ok installed r-cran-blob r-cran-blob 1.3.0-1 install ok installed r-cran-cachem r-cran-cachem 1.1.0-3 install ok installed r-cran-cli r-cran-cli 3.6.6-1 install ok installed r-cran-codetools r-cran-codetools 0.2-20-1 install ok installed r-cran-cpp11 r-cran-cpp11 0.5.5-1 install ok installed r-cran-crayon r-cran-crayon 1.5.3-2 install ok installed r-cran-curl r-cran-curl 8.0.0+dfsg-1 install ok installed r-cran-dbi r-cran-dbi 1.3.0-1 install ok installed r-cran-dbplyr r-cran-dbplyr 2.6.0+dfsg-1 install ok installed r-cran-dplyr r-cran-dplyr 1.2.1-2 install ok installed r-cran-fansi r-cran-fansi 1.0.7-2 install ok installed r-cran-fastmap r-cran-fastmap 1.2.0-3 install ok installed r-cran-filelock r-cran-filelock 1.0.3-2 install ok installed r-cran-formatr r-cran-formatr 1.14-3 install ok installed r-cran-futile.logger r-cran-futile.logger 1.4.9-2 install ok installed r-cran-futile.options r-cran-futile.options 1.0.1-4 install ok installed r-cran-generics r-cran-generics 0.1.4-1 install ok installed r-cran-glue r-cran-glue 1.8.1-2 install ok installed r-cran-httr r-cran-httr 1.4.9+dfsg-1 install ok installed r-cran-httr2 r-cran-httr2 1.3.0-1 install ok installed r-cran-irlba r-cran-irlba 2.3.7-1 install ok installed r-cran-jsonlite r-cran-jsonlite 2.0.0+dfsg-2 install ok installed r-cran-lambda.r r-cran-lambda.r 1.2.4-3 install ok installed r-cran-lattice r-cran-lattice 0.23-1-1 install ok installed r-cran-lifecycle r-cran-lifecycle 1.0.5+dfsg-1 install ok installed r-cran-littler r-cran-littler 0.3.23-1 install ok installed r-cran-magick r-cran-magick 2.9.1+dfsg-3 install ok installed r-cran-magrittr r-cran-magrittr 2.0.5-1 install ok installed r-cran-matrix r-cran-matrix 1.7-6-1 install ok installed r-cran-matrixstats r-cran-matrixstats 1.5.0-3 install ok installed r-cran-memoise r-cran-memoise 2.0.1-2 install ok installed r-cran-memuse r-cran-memuse 4.2-3-1 install ok installed r-cran-mime r-cran-mime 0.13-2 install ok installed r-cran-openssl r-cran-openssl 2.4.2+dfsg-1 install ok installed r-cran-pillar r-cran-pillar 1.11.1+dfsg-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-3 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.2.4-1 install ok installed r-cran-plogr r-cran-plogr 0.2.0-4 install ok installed r-cran-png r-cran-png 0.1-9-1 install ok installed r-cran-purrr r-cran-purrr 1.2.2-1 install ok installed r-cran-r6 r-cran-r6 2.6.1-2 install ok installed r-cran-rcpp r-cran-rcpp 1.1.2-1 install ok installed r-cran-rjson r-cran-rjson 0.2.23-1+b1 install ok installed r-cran-rlang r-cran-rlang 1.3.0-1 install ok installed r-cran-rsqlite r-cran-rsqlite 2.4.6-1 install ok installed r-cran-rsvd r-cran-rsvd 1.0.5-2 install ok installed r-cran-snow r-cran-snow 1:0.4.4-2 install ok installed r-cran-stringi r-cran-stringi 1.8.9-1 install ok installed r-cran-stringr r-cran-stringr 1.6.0-1 install ok installed r-cran-sys r-cran-sys 3.4.3-3 install ok installed r-cran-tibble r-cran-tibble 3.3.1+dfsg-2 install ok installed r-cran-tidyr r-cran-tidyr 1.3.2-3 install ok installed r-cran-tidyselect r-cran-tidyselect 1.2.1+dfsg-3 install ok installed r-cran-utf8 r-cran-utf8 1.2.6-2 install ok installed r-cran-vctrs r-cran-vctrs 0.7.3-2 install ok installed r-cran-withr r-cran-withr 3.0.3+dfsg-1 install ok installed r-cran-xml r-cran-xml 3.99-0.25-1 install ok installed r-cran-xtable r-cran-xtable 1:1.8-8-1 install ok installed r-pkg-team-core-architecture r-pkg-team-core-architecture 20260707 install ok installed readline-common readline-common 8.3-4 install ok installed rpcsvc-proto rpcsvc-proto 1.4.4-1 install ok installed sed sed 4.9-3 install ok installed sensible-utils sensible-utils 0.0.26 install ok installed sqv sqv 1.5.0-1 install ok installed sysvinit-utils sysvinit-utils 3.18-1 install ok installed tar tar 1.35+dfsg-6 install ok installed tzdata tzdata 2026e-1 install ok installed ucf ucf 3.0056 install ok installed unzip unzip 6.0-31 install ok installed util-linux util-linux 2.42.4-1 install ok installed x11-common x11-common 1:7.7+26 install ok installed xdg-utils xdg-utils 1.2.1-2 install ok installed xz-utils xz-utils 5.8.4-1 install ok installed zip zip 3.0-16 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.2-3 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg+really1.3.2-3 2m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-get', 'remove', '--allow-remove-essential', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'ca-certificates', 'cmake', 'comerr-dev:amd64', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dpkg-dev', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'g++-', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'git', 'git-man', 'hdf5-helpers', 'imagemagick-7-common', 'krb5-multidev:amd64', 'libaec-dev:amd64', 'libaec0:amd64', 'libarchive13t64:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libboost-dev:amd64', 'libboost-regex1.92-dev:amd64', 'libboost-regex1.92.0:amd64', 'libboost1.92-dev:amd64', 'libbrotli-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4-gnutls:amd64', 'libcurl4-openssl-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'liberror-perl', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgcc-16-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgssrpc4t64:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhdf5-320:amd64', 'libhdf5-cpp-310:amd64', 'libhdf5-cpp-320:amd64', 'libhdf5-dev', 'libhdf5-fortran-310:amd64', 'libhdf5-fortran-320:amd64', 'libhdf5-hl-310:amd64', 'libhdf5-hl-320:amd64', 'libhdf5-hl-cpp-310:amd64', 'libhdf5-hl-cpp-320:amd64', 'libhdf5-hl-fortran-310:amd64', 'libhdf5-hl-fortran-320:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhnswlib-dev', 'libhwasan0:amd64', 'libice6:amd64', 'libicu76:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjsoncpp26:amd64', 'libk5crypto3:amd64', 'libkadm5clnt-mit12:amd64', 'libkadm5srv-mit12:amd64', 'libkdb5-10t64:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5-dev:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-dev:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblqr-1-0:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'libmagick++-7.q16-5:amd64', 'libmagickcore-7.q16-10:amd64', 'libmagickwand-7.q16-10:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp2-dev:amd64', 'libnghttp3-9:amd64', 'libnghttp3-dev:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl-dev:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libngtcp2-dev:amd64', 'libopenjp2-7:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpkgconf7:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libproc2-1:amd64', 'libpsl-dev:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libraw23t64:amd64', 'libraw25:amd64', 'libreadline8t64:amd64', 'librhash1:amd64', 'librtmp-dev:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libssh2-1-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libstdc++-14-dev:amd64', 'libstdc++-16-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunistring-dev:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'littler', 'make', 'nettle-dev:amd64', 'openssl', 'patch', 'perl', 'perl-modules-5.42', 'pkgconf:amd64', 'pkgconf-bin', 'procps', 'r-base-core', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-assorthead', 'r-bioc-biobase', 'r-bioc-biocfilecache', 'r-bioc-biocgenerics', 'r-bioc-biocmake', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-delayedarray', 'r-bioc-delayedmatrixstats', 'r-bioc-dir.expiry', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicranges', 'r-bioc-graph', 'r-bioc-gseabase', 'r-bioc-h5mread', 'r-bioc-hdf5array', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-matrixgenerics', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-seqinfo', 'r-bioc-singlecellexperiment', 'r-bioc-sparsearray', 'r-bioc-sparsematrixstats', 'r-bioc-spatialexperiment', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-askpass', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-blob', 'r-cran-cachem', 'r-cran-cli', 'r-cran-codetools', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-curl', 'r-cran-dbi', 'r-cran-dbplyr', 'r-cran-dplyr', 'r-cran-fansi', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-httr', 'r-cran-httr2', 'r-cran-irlba', 'r-cran-jsonlite', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magick', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-memuse', 'r-cran-mime', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plogr', 'r-cran-png', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcpp', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rsqlite', 'r-cran-rsvd', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-withr', 'r-cran-xml', 'r-cran-xtable', 'r-pkg-team-core-architecture', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'r-bioc-gsva'] 2m6.7s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: binutils binutils-common binutils-x86-64-linux-gnu build-essential bzip2 ca-certificates cmake comerr-dev cpp cpp-16 cpp-16-x86-64-linux-gnu cpp-x86-64-linux-gnu dpkg-dev fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++ g++-16 g++-16-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-16 gcc-16-x86-64-linux-gnu gcc-x86-64-linux-gnu git git-man hdf5-helpers imagemagick-7-common krb5-multidev libaec-dev libaec0 libarchive13t64 libasan8 libatomic1 libbinutils libblas3 libblosc1 libboost-dev libboost-regex1.92-dev libboost-regex1.92.0 libboost1.92-dev libbrotli-dev libbrotli1 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcom-err2 libcrypt-dev libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4-gnutls libcurl4-openssl-dev libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libdpkg-perl liberror-perl libevent-2.1-7t64 libexpat1 libffi8 libfftw3-double3 libfontconfig1 libfreetype6 libfribidi0 libgcc-14-dev libgcc-16-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls28-dev libgnutls30t64 libgomp1 libgprofng0 libgraphite2-3 libgssapi-krb5-2 libgssrpc4t64 libharfbuzz0b libhdf5-310 libhdf5-320 libhdf5-cpp-310 libhdf5-cpp-320 libhdf5-dev libhdf5-fortran-310 libhdf5-fortran-320 libhdf5-hl-310 libhdf5-hl-320 libhdf5-hl-cpp-310 libhdf5-hl-cpp-320 libhdf5-hl-fortran-310 libhdf5-hl-fortran-320 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhnswlib-dev libhwasan0 libice6 libicu76 libicu78 libidn2-0 libidn2-dev libisl23 libitm1 libjansson4 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjsoncpp26 libk5crypto3 libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 liblapack3 liblcms2-2 libldap-dev libldap2 liblerc4 liblqr-1-0 liblsan0 libltdl7 libmagick++-7.q16-5 libmagickcore-7.q16-10 libmagickwand-7.q16-10 libmpc3 libmpfr6 libncursesw6 libnghttp2-14 libnghttp2-dev libnghttp3-9 libnghttp3-dev libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl-dev libngtcp2-crypto-ossl0 libngtcp2-dev libopenjp2-7 libp11-kit-dev libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libperl5.42 libpixman-1-0 libpkgconf3 libpkgconf7 libpng16-16t64 libproc2-0 libproc2-1 libpsl-dev libpsl5t64 libquadmath0 libraw23t64 libraw25 libreadline8t64 librhash1 librtmp-dev librtmp1 libsasl2-2 libsasl2-modules-db libsframe3 libsharpyuv0 libsm6 libsnappy1v5 libssh2-1-dev libssh2-1t64 libssl-dev libstdc++-14-dev libstdc++-16-dev libsz2 libtasn1-6 libtasn1-6-dev libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtirpc-common libtirpc3t64 libtk8.6 libtsan2 libubsan1 libunbound8 libunistring-dev libunistring5 libuv1t64 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxml2-16 libxrender1 libxss1 libxt6t64 libzstd-dev linux-libc-dev littler make nettle-dev openssl patch perl perl-modules-5.42 pkgconf pkgconf-bin procps r-base-core r-bioc-annotate r-bioc-annotationdbi r-bioc-assorthead r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocmake r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-dir.expiry r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-graph r-bioc-gseabase r-bioc-gsva r-bioc-h5mread r-bioc-hdf5array r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-seqinfo r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-spatialexperiment r-bioc-summarizedexperiment r-bioc-xvector r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-dplyr r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-httr r-cran-httr2 r-cran-irlba r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magick r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-memuse r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-purrr r-cran-r6 r-cran-rcpp r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-rsvd r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xml r-cran-xtable r-pkg-team-core-architecture readline-common rpcsvc-proto sensible-utils ucf unzip x11-common xdg-utils xz-utils zip zlib1g-dev 0 upgraded, 0 newly installed, 339 to remove and 0 not upgraded. After this operation, 1229 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52124 files and directories currently installed.) Removing r-bioc-gsva (2.6.12+dfsg-1) ... Removing r-bioc-hdf5array (1.40.0-1) ... Removing r-bioc-h5mread (1.4.1+dfsg-1) ... Removing r-bioc-rhdf5 (2.56.1+dfsg-1) ... Removing r-bioc-rhdf5filters (1.24.1+dfsg-1) ... Removing build-essential (12.12) ... Removing g++ (4:16.1.0-3) ... Removing gcc (4:16.1.0-3) ... Removing dpkg-dev (1.23.11) ... Removing g++-x86-64-linux-gnu (4:16.1.0-3) ... Removing gcc-x86-64-linux-gnu (4:16.1.0-3) ... Removing bzip2 (1.0.8-6+b2) ... Removing r-bioc-biocparallel (1.46.0-1) ... Removing r-cran-snow (1:0.4.4-2) ... Removing r-bioc-spatialexperiment (1.22.0+ds-1) ... Removing r-cran-magick (2.9.1+dfsg-3) ... Removing r-bioc-delayedmatrixstats (1.34.0+ds-1) ... Removing r-bioc-singlecellexperiment (1.34.0+ds-1) ... Removing r-bioc-summarizedexperiment (1.42.0+dfsg-1) ... Removing r-cran-rsvd (1.0.5-2) ... Removing r-bioc-sparsematrixstats (1.24.0+dfsg-1) ... Removing r-cran-rcpp (1.1.2-1) ... Removing r-bioc-rhdf5lib (2.0.0+dfsg2-1) ... Removing r-bioc-biocmake (1.4.0+dfsg-1) ... Removing cmake (4.3.4-1) ... Removing libhdf5-dev (2.2.0+repack-5) ... Removing libcurl4-openssl-dev:amd64 (8.23.0-1) ... Removing libkrb5-dev:amd64 (1.22.1-3) ... Removing krb5-multidev:amd64 (1.22.1-3) ... Removing comerr-dev:amd64 (2.1-1.47.4-1+b2) ... Removing cpp (4:16.1.0-3) ... Removing cpp-x86-64-linux-gnu (4:16.1.0-3) ... Removing libmagick++-7.q16-5:amd64 (8:7.1.2.33+dfsg1-1) ... Removing libmagickwand-7.q16-10:amd64 (8:7.1.2.33+dfsg1-1) ... Removing libmagickcore-7.q16-10:amd64 (8:7.1.2.33+dfsg1-1) ... Removing g++-16 (16.2.0-3) ... Removing g++-16-x86-64-linux-gnu (16.2.0-3) ... Removing r-bioc-assorthead (1.6.4+dfsg-1) ... Removing git (1:2.55.0-1) ... Removing git-man (1:2.55.0-1) ... Removing hdf5-helpers (2.2.0+repack-5) ... Removing imagemagick-7-common (8:7.1.2.33+dfsg1-1) ... Removing libaec-dev:amd64 (1.1.7-1) ... Removing libaec0:amd64 (1.1.7-1) ... Removing libarchive13t64:amd64 (3.8.9-1) ... Removing r-cran-bh (1.90.0-1) ... Removing libboost-dev:amd64 (1.92.0.1) ... Removing libstdc++-14-dev:amd64 (14.4.0-3) ... Removing libgcc-14-dev:amd64 (14.4.0-3) ... Removing liblqr-1-0:amd64 (0.4.2-2.2+b1) ... Removing r-cran-irlba (2.3.7-1) ... Removing libblosc1:amd64 (1.21.5+ds-2+b2) ... Removing libbrotli-dev:amd64 (1.2.0-4+b1) ... Removing librtmp-dev:amd64 (2.6-1) ... Removing libssh2-1-dev:amd64 (1.11.1-6) ... Removing zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.2-3) ... Removing libjpeg-dev:amd64 (1:3.1.3-4) ... Removing libjpeg62-turbo-dev:amd64 (1:3.1.3-4) ... Removing libgnutls28-dev:amd64 (3.8.13-1) ... Removing libkadm5srv-mit12:amd64 (1.22.1-3) ... Removing libkdb5-10t64:amd64 (1.22.1-3) ... Removing libkadm5clnt-mit12:amd64 (1.22.1-3) ... Removing libcrypt-dev:amd64 (1:4.5.2+20251210-1) ... Removing libcurl3t64-gnutls:amd64 (8.23.0-1) ... Removing libcurl4-gnutls:amd64 (8.23.0-1) ... Removing r-bioc-biocfilecache (3.2.0+dfsg-1) ... Removing r-cran-httr2 (1.3.0-1) ... Removing r-bioc-gseabase (1.74.0+ds-1) ... Removing r-bioc-annotate (1.90.0+dfsg-1) ... Removing libhdf5-hl-cpp-310:amd64 (1.14.6+repack-2+b1) ... Removing libdpkg-perl (1.23.11) ... Removing liberror-perl (0.17030-1) ... Removing libgnutls-dane0t64:amd64 (3.8.13-1) ... Removing libunbound8:amd64 (1.26.1-1) ... Removing libevent-2.1-7t64:amd64 (2.1.13-stable-1) ... Removing libp11-kit-dev:amd64 (0.26.5-1) ... Removing librtmp1:amd64 (2.6-1) ... Removing libfftw3-double3:amd64 (3.3.11-1) ... Removing perl (5.42.3-1) ... Removing libperl5.42:amd64 (5.42.3-1) ... Removing libgdbm-compat4t64:amd64 (1.26-1+b2) ... Removing libgdbm6t64:amd64 (1.26-1+b2) ... Removing libhdf5-hl-fortran-320:amd64 (2.2.0+repack-5) ... Removing nettle-dev:amd64 (3.10.2-1+b1) ... Removing libgmp-dev:amd64 (2:6.3.0+dfsg-5+b2) ... Removing libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-5+b2) ... Removing libraw23t64:amd64 (0.21.4-2+deb13u1) ... Removing r-bioc-annotationdbi (1.74.0-1) ... Removing r-bioc-keggrest (1.52.2+dfsg-1) ... Removing r-bioc-biostrings (2.80.2+dfsg-1) ... Removing libgssrpc4t64:amd64 (1.22.1-3) ... Removing libhdf5-hl-cpp-320:amd64 (2.2.0+repack-5) ... Removing libhdf5-hl-320:amd64 (2.2.0+repack-5) ... Removing libhdf5-cpp-310:amd64 (1.14.6+repack-2+b1) ... Removing libhdf5-cpp-320:amd64 (2.2.0+repack-5) ... Removing libhdf5-hl-fortran-310:amd64 (1.14.6+repack-2+b1) ... Removing libhdf5-fortran-310:amd64 (1.14.6+repack-2+b1) ... Removing libhdf5-fortran-320:amd64 (2.2.0+repack-5) ... Removing libhnswlib-dev (0.9.0-2) ... Removing libicu76:amd64 (76.1-4+b1) ... Removing r-cran-dbplyr (2.6.0+dfsg-1) ... Removing r-cran-tidyr (1.3.2-3) ... Removing r-cran-stringr (1.6.0-1) ... Removing r-cran-stringi (1.8.9-1) ... Removing libpsl-dev:amd64 (0.23.3-1) ... Removing libidn2-dev:amd64 (2.3.8-5) ... Removing libraw25:amd64 (0.22.1-1) ... Removing libjsoncpp26:amd64 (1.9.8-2) ... Removing liblcms2-2:amd64 (2.19.1-1) ... Removing libldap-dev:amd64 (2.6.14+dfsg-2) ... Removing libltdl7:amd64 (2.6.2-3) ... Removing libnghttp2-dev:amd64 (1.70.0-1) ... Removing libnghttp3-dev:amd64 (1.17.0-1) ... Removing libngtcp2-dev:amd64 (1.24.0-1) ... Removing libngtcp2-crypto-ossl-dev:amd64 (1.24.0-1) ... Removing libngtcp2-crypto-gnutls8:amd64 (1.24.0-1) ... Removing libopenjp2-7:amd64 (2.5.4-1.1) ... Removing libpkgconf3:amd64 (1.8.1-4) ... Removing pkgconf:amd64 (2.5.1-4) ... Removing pkgconf-bin (2.5.1-4) ... Removing libpkgconf7:amd64 (2.5.1-4) ... Removing r-cran-png (0.1-9-1) ... Removing libproc2-0:amd64 (2:4.0.4-9) ... Removing librhash1:amd64 (1.4.6-1.1+b1) ... Removing libwebpmux3:amd64 (1.6.0-0.1) ... Removing libwebpdemux2:amd64 (1.6.0-0.1) ... Removing libsnappy1v5:amd64 (1.3.1-3) ... Removing libssl-dev:amd64 (3.6.5-1) ... Removing libtasn1-6-dev:amd64 (4.21.0-2+b1) ... Removing libunistring-dev:amd64 (1.4.2-1) ... Removing libuv1t64:amd64 (1.53.0-1) ... Removing libxml2:amd64 (2.12.7+dfsg+really2.9.14-2.4) ... Removing r-cran-xml (3.99-0.25-1) ... Removing libxml2-16:amd64 (2.15.4+dfsg-1) ... Removing libzstd-dev:amd64 (1.5.7+dfsg-4) ... Removing littler (0.3.23-1) ... Removing make (4.4.1-3) ... Removing patch (2.8-2) ... Removing perl-modules-5.42 (5.42.3-1) ... Removing r-bioc-biobase (2.72.0-1) ... Removing r-bioc-genomicranges (1.64.0+dfsg-1) ... Removing r-bioc-seqinfo (1.2.0+dfsg-1) ... Removing r-bioc-delayedarray (0.38.2+dfsg-1) ... Removing r-bioc-dir.expiry (1.20.0+dfsg-1) ... Removing r-bioc-genomeinfodbdata (1.2.15-2) ... Removing r-bioc-graph (1.90.0-1) ... Removing r-cran-rsqlite (2.4.6-1) ... Removing r-cran-bit64 (4.8.6-1) ... Removing r-cran-bit (4.6.0+dfsg-3) ... Removing r-cran-blob (1.3.0-1) ... Removing r-cran-memoise (2.0.1-2) ... Removing r-cran-cachem (1.1.0-3) ... Removing r-cran-dplyr (1.2.1-2) ... Removing r-cran-tidyselect (1.2.1+dfsg-3) ... Removing r-cran-tibble (3.3.1+dfsg-2) ... Removing r-cran-purrr (1.2.2-1) ... Removing r-cran-codetools (0.2-20-1) ... Removing r-cran-cpp11 (0.5.5-1) ... Removing r-cran-crayon (1.5.3-2) ... Removing r-cran-dbi (1.3.0-1) ... Removing r-cran-fansi (1.0.7-2) ... Removing r-cran-fastmap (1.2.0-3) ... Removing r-cran-filelock (1.0.3-2) ... Removing r-cran-futile.logger (1.4.9-2) ... Removing r-cran-lambda.r (1.2.4-3) ... Removing r-cran-formatr (1.14-3) ... Removing r-cran-futile.options (1.0.1-4) ... Removing r-cran-pillar (1.11.1+dfsg-1) ... Removing r-cran-littler (0.3.23-1) ... Removing r-cran-magrittr (2.0.5-1) ... Removing r-cran-memuse (4.2-3-1) ... Removing r-cran-pkgconfig (2.0.3-3) ... Removing r-cran-pkgkitten (0.2.4-1) ... Removing r-cran-plogr (0.2.0-4) ... Removing r-cran-rjson (0.2.23-1+b1) ... Removing r-cran-utf8 (1.2.6-2) ... Removing r-cran-withr (3.0.3+dfsg-1) ... Removing r-cran-xtable (1:1.8-8-1) ... Removing rpcsvc-proto (1.4.4-1) ... Removing xz-utils (5.8.4-1) ... Removing gcc-16 (16.2.0-3) ... Removing binutils (2.47-6) ... Removing libgprofng0:amd64 (2.47-6) ... Removing gcc-16-x86-64-linux-gnu (16.2.0-3) ... Removing binutils-x86-64-linux-gnu (2.47-6) ... Removing libctf0:amd64 (2.47-6) ... Removing libbinutils:amd64 (2.47-6) ... Removing binutils-common:amd64 (2.47-6) ... Removing r-bioc-sparsearray (1.12.3+dfsg-1) ... Removing r-bioc-s4arrays (1.12.1+dfsg-1) ... Removing r-cran-abind (1.4-8-1) ... Removing r-cran-matrix (1.7-6-1) ... Removing cpp-16 (16.2.0-3) ... Removing cpp-16-x86-64-linux-gnu (16.2.0-3) ... Removing libcc1-0:amd64 (16.2.0-3) ... Removing libctf-nobfd0:amd64 (2.47-6) ... Removing r-cran-httr (1.4.9+dfsg-1) ... Removing r-cran-curl (8.0.0+dfsg-1) ... Removing libhdf5-hl-310:amd64 (1.14.6+repack-2+b1) ... Removing libhdf5-310:amd64 (1.14.6+repack-2+b1) ... Removing libgnutls30t64:amd64 (3.8.13-1) ... Removing libp11-kit0:amd64 (0.26.5-1) ... Removing r-bioc-xvector (0.52.0-1) ... Removing r-bioc-iranges (2.46.0-1) ... Removing libhdf5-320:amd64 (2.2.0+repack-5) ... Removing libisl23:amd64 (0.28-1) ... Removing libjansson4:amd64 (2.15.1-1) ... Removing libmpc3:amd64 (1.3.1-3) ... Removing libmpfr6:amd64 (4.2.2-3) ... Removing libsframe3:amd64 (2.47-6) ... Removing libsz2:amd64 (1.1.7-1) ... Removing libtasn1-6:amd64 (4.21.0-2+b1) ... Removing r-bioc-s4vectors (0.50.3+dfsg-1) ... Removing r-bioc-matrixgenerics (1.24.0-1) ... Removing r-bioc-biocgenerics (0.58.1-2) ... Removing r-cran-openssl (2.4.2+dfsg-1) ... Removing r-cran-askpass (1.2.1-3) ... Removing r-cran-vctrs (0.7.3-2) ... Removing r-cran-generics (0.1.4-1) ... Removing r-cran-glue (1.8.1-2) ... Removing r-cran-jsonlite (2.0.0+dfsg-2) ... Removing r-cran-lattice (0.23-1-1) ... Removing r-cran-lifecycle (1.0.5+dfsg-1) ... Removing r-cran-matrixstats (1.5.0-3) ... Removing r-cran-mime (0.13-2) ... Removing r-cran-r6 (2.6.1-2) ... Removing r-cran-rlang (1.3.0-1) ... Removing r-cran-sys (3.4.3-3) ... Removing r-pkg-team-core-architecture (20260707) ... Removing r-cran-cli (3.6.6-1) ... Removing r-base-core (4.6.1-9) ... Removing ca-certificates (20260816) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpangocairo-1.0-0:amd64 (1.58.2-1) ... Removing libpangoft2-1.0-0:amd64 (1.58.2-1) ... Removing libpango-1.0-0:amd64 (1.58.2-1) ... Removing fontconfig (2.17.1-5) ... Removing libtk8.6:amd64 (8.6.18-1) ... Removing libxft2:amd64 (2.3.6-1+b5) ... Removing libharfbuzz0b:amd64 (12.3.2-2+b2) ... Removing libglib2.0-0t64:amd64 (2.90.1-2) ... Removing liblapack3:amd64 (3.12.1-8) ... Removing libblas3:amd64 (3.12.1-8) ... Removing libcairo2:amd64 (1.18.4-3+b1) ... Removing libtirpc3t64:amd64 (1.3.7+ds-1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libcurl4t64:amd64 (8.23.0-1) ... Removing libthai0:amd64 (0.1.30-3) ... Removing libdatrie1:amd64 (0.2.14-2) ... Removing libtiff6:amd64 (4.7.2-1) ... Removing libdeflate0:amd64 (1.25-1) ... Removing libffi8:amd64 (3.8.0-2) ... Removing libfribidi0:amd64 (1.0.16-5+b1) ... Removing libgfortran5:amd64 (16.2.0-3) ... Removing libgraphite2-3:amd64 (1.3.15-2) ... Removing libxt6t64:amd64 (1:1.2.1-1.3+b2) ... Removing libsm6:amd64 (2:1.2.6-1+b2) ... Removing libice6:amd64 (2:1.1.1-1+b2) ... Removing libicu78:amd64 (78.3-2) ... Removing libpsl5t64:amd64 (0.23.3-1) ... Removing libidn2-0:amd64 (2.3.8-5) ... Removing libjbig0:amd64 (2.1-6.1+b3) ... Removing libjpeg62-turbo:amd64 (1:3.1.3-4) ... Removing libldap2:amd64 (2.6.14+dfsg-2) ... Removing liblerc4:amd64 (4.2.0+ds-1) ... Removing ucf (3.0056) ... Removing procps (2:4.0.7-1) ... Removing libncursesw6:amd64 (6.6+20260608-2) ... Removing libnghttp2-14:amd64 (1.70.0-1) ... Removing libnghttp3-9:amd64 (1.17.0-1) ... Removing libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Removing libngtcp2-16:amd64 (1.24.0-1) ... Removing libpaper-utils (2.2.5-0.4) ... Removing libpaper2:amd64 (2.2.5-0.4) ... Removing libpixman-1-0:amd64 (0.46.4-1+b2) ... Removing libproc2-1:amd64 (2:4.0.7-1) ... Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsasl2-2:amd64 (2.1.28+dfsg1-12) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-12) ... Removing libwebp7:amd64 (1.6.0-0.1) ... Removing libssh2-1t64:amd64 (1.11.1-6) ... Removing libtcl8.6:amd64 (8.6.18+dfsg-1) ... Removing libtext-wrapi18n-perl (0.06-11) ... Removing libtext-charwidth-perl:amd64 (0.04-12+b1) ... Removing libthai-data (0.1.30-3) ... Removing libtirpc-common (1.3.7+ds-1) ... Removing libunistring5:amd64 (1.4.2-1) ... Removing libxss1:amd64 (1:1.2.3-1+b4) ... Removing libxrender1:amd64 (1:0.9.12-1+b2) ... Removing libxcb-shm0:amd64 (1.17.0-2+b2) ... Removing libxcb-render0:amd64 (1.17.0-2+b2) ... Removing libxext6:amd64 (2:1.3.4-1+b4) ... Removing openssl (3.6.5-1) ... Removing readline-common (8.3-4) ... Removing sensible-utils (0.0.26) ... Removing unzip (6.0-31) ... Removing x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.2.1-2) ... Removing zip (3.0-16) ... Removing libfontconfig1:amd64 (2.17.1-5) ... Removing fontconfig-config (2.17.1-5) ... Removing fonts-dejavu-core (2.37-9) ... Removing fonts-dejavu-mono (2.37-9) ... Removing libfreetype6:amd64 (2.14.3+dfsg-3) ... Removing libgssapi-krb5-2:amd64 (1.22.1-3) ... Removing libexpat1:amd64 (2.9.0-1) ... Removing libpng16-16t64:amd64 (1.6.59-1) ... Removing libx11-6:amd64 (2:1.8.13-1) ... Removing libx11-data (2:1.8.13-1) ... Removing libxcb1:amd64 (1.17.0-2+b2) ... Removing libxau6:amd64 (1:1.0.11-1+b2) ... Removing libxdmcp6:amd64 (1:1.1.5-2+b1) ... Removing libkrb5-3:amd64 (1.22.1-3) ... Removing libcom-err2:amd64 (1.47.4-1+b2) ... Removing libk5crypto3:amd64 (1.22.1-3) ... Removing libkeyutils1:amd64 (1.6.3-6+b2) ... Removing libkrb5support0:amd64 (1.22.1-3) ... Removing libboost1.92-dev:amd64 (1.92.0-4) ... Removing libboost-regex1.92-dev:amd64 (1.92.0-4) ... Removing libstdc++-16-dev:amd64 (16.2.0-3) ... Removing libgcc-16-dev:amd64 (16.2.0-3) ... Removing libasan8:amd64 (16.2.0-3) ... Removing libatomic1:amd64 (16.2.0-3) ... Removing libboost-regex1.92.0:amd64 (1.92.0-4) ... Removing libheif1:amd64 (1.23.6-2) ... Removing libheif-plugin-libde265:amd64 (1.23.6-2) ... Removing libbrotli1:amd64 (1.2.0-4+b1) ... Removing libc6-dev:amd64 (2.43-7) ... Removing libc-dev-bin (2.43-7) ... Removing libde265-0:amd64 (1.1.3-1+b1) ... Removing libgomp1:amd64 (16.2.0-3) ... Removing libhwasan0:amd64 (16.2.0-3) ... Removing libitm1:amd64 (16.2.0-3) ... Removing liblsan0:amd64 (16.2.0-3) ... Removing libquadmath0:amd64 (16.2.0-3) ... Removing libsharpyuv0:amd64 (1.6.0-0.1) ... Removing libtsan2:amd64 (16.2.0-3) ... Removing libubsan1:amd64 (16.2.0-3) ... Removing linux-libc-dev (7.2.11-1) ... Removing libheif-plugin-dav1d:amd64 (1.23.6-2) ... Removing libdav1d7:amd64 (1.5.4-1) ... Processing triggers for libc-bin (2.43-7) ... 2m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-get', 'remove', '--allow-remove-essential', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'ca-certificates', 'cmake', 'comerr-dev:amd64', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dpkg-dev', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'g++-', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'git', 'git-man', 'hdf5-helpers', 'imagemagick-7-common', 'krb5-multidev:amd64', 'libaec-dev:amd64', 'libaec0:amd64', 'libarchive13t64:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libboost-dev:amd64', 'libboost-regex1.92-dev:amd64', 'libboost-regex1.92.0:amd64', 'libboost1.92-dev:amd64', 'libbrotli-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4-gnutls:amd64', 'libcurl4-openssl-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'liberror-perl', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgcc-16-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgssrpc4t64:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhdf5-320:amd64', 'libhdf5-cpp-310:amd64', 'libhdf5-cpp-320:amd64', 'libhdf5-dev', 'libhdf5-fortran-310:amd64', 'libhdf5-fortran-320:amd64', 'libhdf5-hl-310:amd64', 'libhdf5-hl-320:amd64', 'libhdf5-hl-cpp-310:amd64', 'libhdf5-hl-cpp-320:amd64', 'libhdf5-hl-fortran-310:amd64', 'libhdf5-hl-fortran-320:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhnswlib-dev', 'libhwasan0:amd64', 'libice6:amd64', 'libicu76:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjsoncpp26:amd64', 'libk5crypto3:amd64', 'libkadm5clnt-mit12:amd64', 'libkadm5srv-mit12:amd64', 'libkdb5-10t64:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5-dev:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-dev:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblqr-1-0:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'libmagick++-7.q16-5:amd64', 'libmagickcore-7.q16-10:amd64', 'libmagickwand-7.q16-10:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp2-dev:amd64', 'libnghttp3-9:amd64', 'libnghttp3-dev:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl-dev:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libngtcp2-dev:amd64', 'libopenjp2-7:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpkgconf7:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libproc2-1:amd64', 'libpsl-dev:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libraw23t64:amd64', 'libraw25:amd64', 'libreadline8t64:amd64', 'librhash1:amd64', 'librtmp-dev:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libssh2-1-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libstdc++-14-dev:amd64', 'libstdc++-16-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunistring-dev:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'littler', 'make', 'nettle-dev:amd64', 'openssl', 'patch', 'perl', 'perl-modules-5.42', 'pkgconf:amd64', 'pkgconf-bin', 'procps', 'r-base-core', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-assorthead', 'r-bioc-biobase', 'r-bioc-biocfilecache', 'r-bioc-biocgenerics', 'r-bioc-biocmake', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-delayedarray', 'r-bioc-delayedmatrixstats', 'r-bioc-dir.expiry', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicranges', 'r-bioc-graph', 'r-bioc-gseabase', 'r-bioc-h5mread', 'r-bioc-hdf5array', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-matrixgenerics', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-seqinfo', 'r-bioc-singlecellexperiment', 'r-bioc-sparsearray', 'r-bioc-sparsematrixstats', 'r-bioc-spatialexperiment', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-askpass', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-blob', 'r-cran-cachem', 'r-cran-cli', 'r-cran-codetools', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-curl', 'r-cran-dbi', 'r-cran-dbplyr', 'r-cran-dplyr', 'r-cran-fansi', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-httr', 'r-cran-httr2', 'r-cran-irlba', 'r-cran-jsonlite', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magick', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-memuse', 'r-cran-mime', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plogr', 'r-cran-png', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcpp', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rsqlite', 'r-cran-rsvd', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-withr', 'r-cran-xml', 'r-cran-xtable', 'r-pkg-team-core-architecture', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xz-utils', 'zip', 'zlib1g-dev:amd64', 'r-bioc-gsva'] 2m6.7s INFO: Running scripts post_remove 2m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_remove_exceptions'] 2m6.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_remove_exceptions'] 2m6.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'ca-certificates', 'cmake', 'comerr-dev:amd64', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dpkg-dev', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'g++', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'git', 'git-man', 'hdf5-helpers', 'imagemagick-7-common', 'krb5-multidev:amd64', 'libaec-dev:amd64', 'libaec0:amd64', 'libarchive13t64:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libboost-dev:amd64', 'libboost-regex1.92-dev:amd64', 'libboost-regex1.92.0:amd64', 'libboost1.92-dev:amd64', 'libbrotli-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4-gnutls:amd64', 'libcurl4-openssl-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'liberror-perl', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgcc-16-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgssrpc4t64:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhdf5-320:amd64', 'libhdf5-cpp-310:amd64', 'libhdf5-cpp-320:amd64', 'libhdf5-dev', 'libhdf5-fortran-310:amd64', 'libhdf5-fortran-320:amd64', 'libhdf5-hl-310:amd64', 'libhdf5-hl-320:amd64', 'libhdf5-hl-cpp-310:amd64', 'libhdf5-hl-cpp-320:amd64', 'libhdf5-hl-fortran-310:amd64', 'libhdf5-hl-fortran-320:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhnswlib-dev', 'libhwasan0:amd64', 'libice6:amd64', 'libicu76:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjsoncpp26:amd64', 'libk5crypto3:amd64', 'libkadm5clnt-mit12:amd64', 'libkadm5srv-mit12:amd64', 'libkdb5-10t64:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5-dev:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-dev:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblqr-1-0:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'libmagick++-7.q16-5:amd64', 'libmagickcore-7.q16-10:amd64', 'libmagickwand-7.q16-10:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp2-dev:amd64', 'libnghttp3-9:amd64', 'libnghttp3-dev:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl-dev:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libngtcp2-dev:amd64', 'libopenjp2-7:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpkgconf7:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libproc2-1:amd64', 'libpsl-dev:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libraw23t64:amd64', 'libraw25:amd64', 'libreadline8t64:amd64', 'librhash1:amd64', 'librtmp-dev:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libssh2-1-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libstdc++-14-dev:amd64', 'libstdc++-16-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunistring-dev:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'littler', 'make', 'nettle-dev:amd64', 'openssl', 'patch', 'perl', 'perl-modules-5.42', 'pkgconf:amd64', 'pkgconf-bin', 'procps', 'r-base-core', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-assorthead', 'r-bioc-biobase', 'r-bioc-biocfilecache', 'r-bioc-biocgenerics', 'r-bioc-biocmake', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-delayedarray', 'r-bioc-delayedmatrixstats', 'r-bioc-dir.expiry', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicranges', 'r-bioc-graph', 'r-bioc-gseabase', 'r-bioc-h5mread', 'r-bioc-hdf5array', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-matrixgenerics', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-seqinfo', 'r-bioc-singlecellexperiment', 'r-bioc-sparsearray', 'r-bioc-sparsematrixstats', 'r-bioc-spatialexperiment', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-askpass', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-blob', 'r-cran-cachem', 'r-cran-cli', 'r-cran-codetools', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-curl', 'r-cran-dbi', 'r-cran-dbplyr', 'r-cran-dplyr', 'r-cran-fansi', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-httr', 'r-cran-httr2', 'r-cran-irlba', 'r-cran-jsonlite', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magick', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-memuse', 'r-cran-mime', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plogr', 'r-cran-png', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcpp', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rsqlite', 'r-cran-rsvd', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-withr', 'r-cran-xml', 'r-cran-xtable', 'r-pkg-team-core-architecture', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xz-utils', 'zip', 'zlib1g-dev:amd64'] 2m7.1s DUMP: (Reading database ... 5054 files and directories currently installed.) Purging configuration files for binutils (2.47-6) ... Purging configuration files for binutils-common:amd64 (2.47-6) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove build-essential which is not installed dpkg: warning: ignoring request to remove bzip2 which is not installed Purging configuration files for ca-certificates (20260816) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove cmake which is not installed Purging configuration files for comerr-dev:amd64 (2.1-1.47.4-1+b2) ... Purging configuration files for cpp (4:16.1.0-3) ... dpkg: warning: ignoring request to remove cpp-16 which is not installed dpkg: warning: ignoring request to remove cpp-16-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove cpp-x86-64-linux-gnu which is not installed Purging configuration files for dpkg-dev (1.23.11) ... Purging configuration files for fontconfig (2.17.1-5) ... Purging configuration files for fontconfig-config (2.17.1-5) ... Purging configuration files for fonts-dejavu-core (2.37-9) ... Purging configuration files for fonts-dejavu-mono (2.37-9) ... dpkg: warning: ignoring request to remove g++ which is not installed dpkg: warning: ignoring request to remove g++-16 which is not installed dpkg: warning: ignoring request to remove g++-16-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove g++-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove gcc which is not installed dpkg: warning: ignoring request to remove gcc-16 which is not installed dpkg: warning: ignoring request to remove gcc-16-x86-64-linux-gnu which is not installed dpkg: warning: ignoring request to remove gcc-x86-64-linux-gnu which is not installed Purging configuration files for git (1:2.55.0-1) ... dpkg: warning: ignoring request to remove git-man which is not installed dpkg: warning: ignoring request to remove hdf5-helpers which is not installed Purging configuration files for imagemagick-7-common (8:7.1.2.33+dfsg1-1) ... dpkg: warning: ignoring 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warning: ignoring request to remove libbrotli-dev which is not installed dpkg: warning: ignoring request to remove libbrotli1 which is not installed dpkg: warning: ignoring request to remove libc-dev-bin which is not installed dpkg: warning: ignoring request to remove libc6-dev which is not installed dpkg: warning: ignoring request to remove libcairo2 which is not installed dpkg: warning: ignoring request to remove libcc1-0 which is not installed dpkg: warning: ignoring request to remove libcom-err2 which is not installed Purging configuration files for libcrypt-dev:amd64 (1:4.5.2+20251210-1) ... dpkg: warning: ignoring request to remove libctf-nobfd0 which is not installed dpkg: warning: ignoring request to remove libctf0 which is not installed dpkg: warning: ignoring request to remove libcurl3t64-gnutls which is not installed dpkg: warning: ignoring request to remove libcurl4-gnutls which is not installed dpkg: warning: ignoring request to remove libcurl4-openssl-dev which is not installed dpkg: warning: ignoring request to remove libcurl4t64 which is not installed dpkg: warning: ignoring request to remove libdatrie1 which is not installed dpkg: warning: ignoring request to remove libdav1d7 which is not installed dpkg: warning: ignoring request to remove libde265-0 which is not installed dpkg: warning: ignoring request to remove libdeflate0 which is not installed dpkg: warning: ignoring request to remove libdpkg-perl which is not installed dpkg: warning: ignoring request to remove liberror-perl which is not installed dpkg: warning: ignoring request to remove libevent-2.1-7t64 which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libfftw3-double3 which is not installed dpkg: warning: ignoring request to remove libfontconfig1 which is not installed dpkg: warning: ignoring request to remove libfreetype6 which is not installed dpkg: warning: ignoring request to remove libfribidi0 which is not installed dpkg: warning: ignoring request to remove libgcc-14-dev which is not installed dpkg: warning: ignoring request to remove libgcc-16-dev which is not installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which is not installed dpkg: warning: ignoring request to remove libgdbm6t64 which is not installed dpkg: warning: ignoring request to remove libgfortran5 which is not installed Purging configuration files for libglib2.0-0t64:amd64 (2.90.1-2) ... dpkg: warning: ignoring request to remove libgmp-dev which is not installed dpkg: warning: ignoring request to remove libgmpxx4ldbl which is not installed dpkg: warning: ignoring request to remove libgnutls-dane0t64 which is not installed dpkg: warning: ignoring request to remove libgnutls28-dev which is not installed dpkg: warning: ignoring request to remove libgnutls30t64 which is not installed dpkg: warning: ignoring request to 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not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-gnutls8 which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-ossl-dev which is not installed dpkg: warning: ignoring request to remove libngtcp2-crypto-ossl0 which is not installed dpkg: warning: ignoring request to remove libngtcp2-dev which is not installed dpkg: warning: ignoring request to remove libopenjp2-7 which is not installed dpkg: warning: ignoring request to remove libp11-kit-dev which is not installed dpkg: warning: ignoring request to remove libp11-kit0 which is not installed dpkg: warning: ignoring request to remove libpango-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which is not installed dpkg: warning: ignoring request to remove libpaper-utils which is not installed Purging configuration files for libpaper2:amd64 (2.2.5-0.4) ... dpkg: warning: ignoring request to remove libperl5.42 which is not installed dpkg: warning: ignoring request to remove libpixman-1-0 which is not installed dpkg: warning: ignoring request to remove libpkgconf3 which is not installed dpkg: warning: ignoring request to remove libpkgconf7 which is not installed dpkg: warning: ignoring request to remove libpng16-16t64 which is not installed dpkg: warning: ignoring request to remove libproc2-0 which is not installed dpkg: warning: ignoring request to remove libproc2-1 which is not installed dpkg: warning: ignoring request to remove libpsl-dev which is not installed dpkg: warning: ignoring request to remove libpsl5t64 which is not installed dpkg: warning: ignoring request to remove libquadmath0 which is not installed dpkg: warning: ignoring request to remove libraw23t64 which is not installed dpkg: warning: ignoring request to remove libraw25 which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: 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Purging configuration files for libtirpc3t64:amd64 (1.3.7+ds-1) ... dpkg: warning: ignoring request to remove libtk8.6 which is not installed dpkg: warning: ignoring request to remove libtsan2 which is not installed dpkg: warning: ignoring request to remove libubsan1 which is not installed dpkg: warning: ignoring request to remove libunbound8 which is not installed dpkg: warning: ignoring request to remove libunistring-dev which is not installed dpkg: warning: ignoring request to remove libunistring5 which is not installed dpkg: warning: ignoring request to remove libuv1t64 which is not installed dpkg: warning: ignoring request to remove libwebp7 which is not installed dpkg: warning: ignoring request to remove libwebpdemux2 which is not installed dpkg: warning: ignoring request to remove libwebpmux3 which is not installed dpkg: warning: ignoring request to remove libx11-6 which is not installed dpkg: warning: ignoring request to remove libx11-data which is not installed dpkg: warning: ignoring request to remove libxau6 which is not installed dpkg: warning: ignoring request to remove libxcb-render0 which is not installed dpkg: warning: ignoring request to remove libxcb-shm0 which is not installed dpkg: warning: ignoring request to remove libxcb1 which is not installed dpkg: warning: ignoring request to remove libxdmcp6 which is not installed dpkg: warning: ignoring request to remove libxext6 which is not installed dpkg: warning: ignoring request to remove libxft2 which is not installed dpkg: warning: ignoring request to remove libxml2 which is not installed dpkg: warning: ignoring request to remove libxml2-16 which is not installed dpkg: warning: ignoring request to remove libxrender1 which is not installed dpkg: warning: ignoring request to remove libxss1 which is not installed dpkg: warning: ignoring request to remove libxt6t64 which is not installed dpkg: warning: ignoring request to remove libzstd-dev which is not installed dpkg: warning: ignoring request to remove linux-libc-dev which is not installed dpkg: warning: ignoring request to remove littler which is not installed dpkg: warning: ignoring request to remove make which is not installed dpkg: warning: ignoring request to remove nettle-dev which is not installed Purging configuration files for openssl (3.6.5-1) ... dpkg: warning: ignoring request to remove patch which is not installed Purging configuration files for perl (5.42.3-1) ... dpkg: warning: ignoring request to remove perl-modules-5.42 which is not installed Purging configuration files for pkgconf:amd64 (2.5.1-4) ... dpkg: warning: ignoring request to remove pkgconf-bin which is not installed Purging configuration files for procps (2:4.0.7-1) ... Purging configuration files for r-base-core (4.6.1-9) ... dpkg: warning: ignoring request to remove r-bioc-annotate which is not installed dpkg: warning: ignoring request to remove r-bioc-annotationdbi which is not installed dpkg: warning: ignoring request to remove r-bioc-assorthead which is not installed dpkg: warning: ignoring request to remove r-bioc-biobase which is not installed dpkg: warning: ignoring request to remove r-bioc-biocfilecache which is not installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which is not installed dpkg: warning: ignoring request to remove r-bioc-biocmake which is not installed dpkg: warning: ignoring request to remove r-bioc-biocparallel which is not installed dpkg: warning: ignoring request to remove r-bioc-biostrings which is not installed dpkg: warning: ignoring request to remove r-bioc-delayedarray which is not installed dpkg: warning: ignoring request to remove r-bioc-delayedmatrixstats which is not installed dpkg: warning: ignoring request to remove r-bioc-dir.expiry which is not installed dpkg: warning: ignoring request to remove r-bioc-genomeinfodbdata which is not installed dpkg: warning: ignoring request to remove r-bioc-genomicranges which is not installed dpkg: warning: ignoring request to remove r-bioc-graph which is not installed dpkg: warning: ignoring request to remove r-bioc-gseabase which is not installed dpkg: warning: ignoring request to remove r-bioc-h5mread which is not installed dpkg: warning: ignoring request to remove r-bioc-hdf5array which is not installed dpkg: warning: ignoring request to remove r-bioc-iranges which is not installed dpkg: warning: ignoring request to remove r-bioc-keggrest which is not installed dpkg: warning: ignoring request to remove r-bioc-matrixgenerics which is not installed dpkg: warning: ignoring request to remove r-bioc-rhdf5 which is not installed dpkg: warning: ignoring request to remove r-bioc-rhdf5filters which is not installed dpkg: warning: ignoring request to remove r-bioc-rhdf5lib which is not installed dpkg: warning: ignoring request to remove r-bioc-s4arrays which is not installed dpkg: warning: ignoring request to remove r-bioc-s4vectors which is not installed dpkg: warning: ignoring request to remove r-bioc-seqinfo which is not installed dpkg: warning: ignoring request to remove r-bioc-singlecellexperiment which is not installed dpkg: warning: ignoring request to remove r-bioc-sparsearray which is not installed dpkg: warning: ignoring request to remove r-bioc-sparsematrixstats which is not installed dpkg: warning: ignoring request to remove r-bioc-spatialexperiment which is not installed dpkg: warning: ignoring request to remove r-bioc-summarizedexperiment which is not installed dpkg: warning: ignoring request to remove r-bioc-xvector which is not installed dpkg: warning: ignoring request to remove r-cran-abind which is not installed dpkg: warning: ignoring request to remove r-cran-askpass which is not installed dpkg: warning: ignoring request to remove r-cran-bh which is not installed dpkg: warning: ignoring request to remove r-cran-bit which is not installed dpkg: warning: ignoring request to remove r-cran-bit64 which is not installed dpkg: warning: ignoring request to remove r-cran-blob which is not installed dpkg: warning: ignoring request to remove r-cran-cachem which is not installed dpkg: warning: ignoring request to remove r-cran-cli which is not installed dpkg: warning: ignoring request to remove r-cran-codetools which is not installed dpkg: warning: ignoring request to remove r-cran-cpp11 which is not installed dpkg: warning: ignoring request to remove r-cran-crayon which is not installed dpkg: warning: ignoring request to remove r-cran-curl which is not installed dpkg: warning: ignoring request to remove r-cran-dbi which is not installed dpkg: warning: ignoring request to remove r-cran-dbplyr which is not installed dpkg: warning: ignoring request to remove r-cran-dplyr which is not installed dpkg: warning: ignoring request to remove r-cran-fansi which is not installed dpkg: warning: ignoring request to remove r-cran-fastmap which is not installed dpkg: warning: ignoring request to remove r-cran-filelock which is not installed dpkg: warning: ignoring request to remove r-cran-formatr which is not installed dpkg: warning: ignoring request to remove r-cran-futile.logger which is not installed dpkg: warning: ignoring request to remove r-cran-futile.options which is not installed dpkg: warning: ignoring request to remove r-cran-generics which is not installed dpkg: warning: ignoring request to remove r-cran-glue which is not installed dpkg: warning: ignoring request to remove r-cran-httr which is not installed dpkg: warning: ignoring request to remove r-cran-httr2 which is not installed dpkg: warning: ignoring request to remove r-cran-irlba which is not installed dpkg: warning: ignoring request to remove r-cran-jsonlite which is not installed dpkg: warning: ignoring request to remove r-cran-lambda.r which is not installed dpkg: warning: ignoring request to remove r-cran-lattice which is not installed dpkg: warning: ignoring request to remove r-cran-lifecycle which is not installed dpkg: warning: ignoring request to remove r-cran-littler which is not installed dpkg: warning: ignoring request to remove r-cran-magick which is not installed dpkg: warning: ignoring request to remove r-cran-magrittr which is not installed dpkg: warning: ignoring request to remove r-cran-matrix which is not installed dpkg: warning: ignoring request to remove r-cran-matrixstats which is not installed dpkg: warning: ignoring request to remove r-cran-memoise which is not installed dpkg: warning: ignoring request to remove r-cran-memuse which is not installed dpkg: warning: ignoring request to remove r-cran-mime which is not installed dpkg: warning: ignoring request to remove r-cran-openssl which is not installed dpkg: warning: ignoring request to remove r-cran-pillar which is not installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which is not installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which is not installed dpkg: warning: ignoring request to remove r-cran-plogr which is not installed dpkg: warning: ignoring request to remove r-cran-png which is not installed dpkg: warning: ignoring request to remove r-cran-purrr which is not installed dpkg: warning: ignoring request to remove r-cran-r6 which is not installed dpkg: warning: ignoring request to remove r-cran-rcpp which is not installed dpkg: warning: ignoring request to remove r-cran-rjson which is not installed dpkg: warning: ignoring request to remove r-cran-rlang which is not installed dpkg: warning: ignoring request to remove r-cran-rsqlite which is not installed dpkg: warning: ignoring request to remove r-cran-rsvd which is not installed dpkg: warning: ignoring request to remove r-cran-snow which is not installed dpkg: warning: ignoring request to remove r-cran-stringi which is not installed dpkg: warning: ignoring request to remove r-cran-stringr which is not installed dpkg: warning: ignoring request to remove r-cran-sys which is not installed dpkg: warning: ignoring request to remove r-cran-tibble which is not installed dpkg: warning: ignoring request to remove r-cran-tidyr which is not installed dpkg: warning: ignoring request to remove r-cran-tidyselect which is not installed dpkg: warning: ignoring request to remove r-cran-utf8 which is not installed dpkg: warning: ignoring request to remove r-cran-vctrs which is not installed dpkg: warning: ignoring request to remove r-cran-withr which is not installed dpkg: warning: ignoring request to remove r-cran-xml which is not installed dpkg: warning: ignoring request to remove r-cran-xtable which is not installed dpkg: warning: ignoring request to remove r-pkg-team-core-architecture which is not installed Purging configuration files for readline-common (8.3-4) ... dpkg: warning: ignoring request to remove rpcsvc-proto which is not installed dpkg: warning: ignoring request to remove sensible-utils which is not installed Purging configuration files for ucf (3.0056) ... dpkg: warning: ignoring request to remove unzip which is not installed Purging configuration files for x11-common (1:7.7+26) ... dpkg: warning: ignoring request to remove xdg-utils which is not installed dpkg: warning: ignoring request to remove xz-utils which is not installed dpkg: warning: ignoring request to remove zip which is not installed dpkg: warning: ignoring request to remove zlib1g-dev which is not installed 2m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'build-essential', 'bzip2', 'ca-certificates', 'cmake', 'comerr-dev:amd64', 'cpp', 'cpp-16', 'cpp-16-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'dpkg-dev', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'g++', 'g++-16', 'g++-16-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-16', 'gcc-16-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'git', 'git-man', 'hdf5-helpers', 'imagemagick-7-common', 'krb5-multidev:amd64', 'libaec-dev:amd64', 'libaec0:amd64', 'libarchive13t64:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libblosc1:amd64', 'libboost-dev:amd64', 'libboost-regex1.92-dev:amd64', 'libboost-regex1.92.0:amd64', 'libboost1.92-dev:amd64', 'libbrotli-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcc1-0:amd64', 'libcom-err2:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4-gnutls:amd64', 'libcurl4-openssl-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdav1d7:amd64', 'libde265-0:amd64', 'libdeflate0:amd64', 'libdpkg-perl', 'liberror-perl', 'libevent-2.1-7t64:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libfftw3-double3:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-14-dev:amd64', 'libgcc-16-dev:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgmp-dev:amd64', 'libgmpxx4ldbl:amd64', 'libgnutls-dane0t64:amd64', 'libgnutls28-dev:amd64', 'libgnutls30t64:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgraphite2-3:amd64', 'libgssapi-krb5-2:amd64', 'libgssrpc4t64:amd64', 'libharfbuzz0b:amd64', 'libhdf5-310:amd64', 'libhdf5-320:amd64', 'libhdf5-cpp-310:amd64', 'libhdf5-cpp-320:amd64', 'libhdf5-dev', 'libhdf5-fortran-310:amd64', 'libhdf5-fortran-320:amd64', 'libhdf5-hl-310:amd64', 'libhdf5-hl-320:amd64', 'libhdf5-hl-cpp-310:amd64', 'libhdf5-hl-cpp-320:amd64', 'libhdf5-hl-fortran-310:amd64', 'libhdf5-hl-fortran-320:amd64', 'libheif-plugin-dav1d:amd64', 'libheif-plugin-libde265:amd64', 'libheif1:amd64', 'libhnswlib-dev', 'libhwasan0:amd64', 'libice6:amd64', 'libicu76:amd64', 'libicu78:amd64', 'libidn2-0:amd64', 'libidn2-dev:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjbig0:amd64', 'libjpeg-dev:amd64', 'libjpeg62-turbo:amd64', 'libjpeg62-turbo-dev:amd64', 'libjsoncpp26:amd64', 'libk5crypto3:amd64', 'libkadm5clnt-mit12:amd64', 'libkadm5srv-mit12:amd64', 'libkdb5-10t64:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5-dev:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblcms2-2:amd64', 'libldap-dev:amd64', 'libldap2:amd64', 'liblerc4:amd64', 'liblqr-1-0:amd64', 'liblsan0:amd64', 'libltdl7:amd64', 'libmagick++-7.q16-5:amd64', 'libmagickcore-7.q16-10:amd64', 'libmagickwand-7.q16-10:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnghttp2-dev:amd64', 'libnghttp3-9:amd64', 'libnghttp3-dev:amd64', 'libngtcp2-16:amd64', 'libngtcp2-crypto-gnutls8:amd64', 'libngtcp2-crypto-ossl-dev:amd64', 'libngtcp2-crypto-ossl0:amd64', 'libngtcp2-dev:amd64', 'libopenjp2-7:amd64', 'libp11-kit-dev:amd64', 'libp11-kit0:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper2:amd64', 'libperl5.42:amd64', 'libpixman-1-0:amd64', 'libpkgconf3:amd64', 'libpkgconf7:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libproc2-1:amd64', 'libpsl-dev:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libraw23t64:amd64', 'libraw25:amd64', 'libreadline8t64:amd64', 'librhash1:amd64', 'librtmp-dev:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe3:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsnappy1v5:amd64', 'libssh2-1-dev:amd64', 'libssh2-1t64:amd64', 'libssl-dev:amd64', 'libstdc++-14-dev:amd64', 'libstdc++-16-dev:amd64', 'libsz2:amd64', 'libtasn1-6:amd64', 'libtasn1-6-dev:amd64', 'libtcl8.6:amd64', 'libtext-charwidth-perl:amd64', 'libtext-wrapi18n-perl', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtirpc-common', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libunbound8:amd64', 'libunistring-dev:amd64', 'libunistring5:amd64', 'libuv1t64:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxml2-16:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libzstd-dev:amd64', 'linux-libc-dev', 'littler', 'make', 'nettle-dev:amd64', 'openssl', 'patch', 'perl', 'perl-modules-5.42', 'pkgconf:amd64', 'pkgconf-bin', 'procps', 'r-base-core', 'r-bioc-annotate', 'r-bioc-annotationdbi', 'r-bioc-assorthead', 'r-bioc-biobase', 'r-bioc-biocfilecache', 'r-bioc-biocgenerics', 'r-bioc-biocmake', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-delayedarray', 'r-bioc-delayedmatrixstats', 'r-bioc-dir.expiry', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicranges', 'r-bioc-graph', 'r-bioc-gseabase', 'r-bioc-h5mread', 'r-bioc-hdf5array', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-matrixgenerics', 'r-bioc-rhdf5', 'r-bioc-rhdf5filters', 'r-bioc-rhdf5lib', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-seqinfo', 'r-bioc-singlecellexperiment', 'r-bioc-sparsearray', 'r-bioc-sparsematrixstats', 'r-bioc-spatialexperiment', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-cran-abind', 'r-cran-askpass', 'r-cran-bh', 'r-cran-bit', 'r-cran-bit64', 'r-cran-blob', 'r-cran-cachem', 'r-cran-cli', 'r-cran-codetools', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-curl', 'r-cran-dbi', 'r-cran-dbplyr', 'r-cran-dplyr', 'r-cran-fansi', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-formatr', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-httr', 'r-cran-httr2', 'r-cran-irlba', 'r-cran-jsonlite', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magick', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-memuse', 'r-cran-mime', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plogr', 'r-cran-png', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rcpp', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rsqlite', 'r-cran-rsvd', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-withr', 'r-cran-xml', 'r-cran-xtable', 'r-pkg-team-core-architecture', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'xz-utils', 'zip', 'zlib1g-dev:amd64'] 2m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'dpkg', '--purge', 'r-bioc-gsva'] 2m7.1s DUMP: dpkg: warning: ignoring request to remove r-bioc-gsva which is not installed 2m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'dpkg', '--purge', 'r-bioc-gsva'] 2m7.1s INFO: Running scripts post_purge 2m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_purge_exceptions'] 2m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_purge_exceptions'] 2m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'dpkg', '--purge', '--pending'] 2m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'dpkg', '--purge', '--pending'] 2m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'dpkg', '--remove', '--pending'] 2m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'dpkg', '--remove', '--pending'] 2m7.1s INFO: Running scripts post_test 2m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_test_exceptions'] 2m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'tmp/scripts/post_test_exceptions'] 2m7.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpveszhioq'] 2m7.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpveszhioq'] 2m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'dpkg-divert', '--list'] 2m7.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 2m7.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'dpkg-divert', '--list'] 2m7.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-get', 'clean'] 2m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpveszhioq', 'apt-get', 'clean'] 2m7.6s DEBUG: Recording chroot state 2m8.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpveszhioq/dev/shm'] 2m8.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpveszhioq/dev/shm'] 2m8.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpveszhioq/dev/console'] 2m8.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpveszhioq/dev/console'] 2m8.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpveszhioq/dev/ptmx'] 2m8.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpveszhioq/dev/ptmx'] 2m8.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpveszhioq/dev/pts'] 2m8.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpveszhioq/dev/pts'] 2m8.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpveszhioq/proc'] 2m8.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpveszhioq/proc'] 2m8.7s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpveszhioq'] 2m8.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpveszhioq'] 2m8.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpveszhioq 2m8.8s INFO: PASS: Upgrading between Debian distributions. 2m8.8s INFO: PASS: All tests. 2m8.8s INFO: piuparts run ends. ret=0 End: 2026-10-19 04:03:34 GMT