Start: 2024-03-14 12:07:26 GMT [stable] Package: r-bioc-scrnaseq Version: 2.4.0+ds-3 Installed-Size: 511 Maintainer: Debian R Packages Maintainers Architecture: all Depends: r-base-core (>= 4.0.3-1), r-api-4.0, r-api-bioc-3.12, r-bioc-singlecellexperiment, r-bioc-biocgenerics, r-bioc-s4vectors, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-experimenthub, r-bioc-annotationhub, r-bioc-annotationdbi, r-bioc-ensembldb, r-bioc-genomicfeatures Suggests: r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown, r-bioc-biocfilecache, r-cran-testthat Description: Collection of Public Single-Cell RNA-Seq Datasets Homepage: https://bioconductor.org/packages/data/experiment/scRNAseq/ Description-md5: a469441afa6957bf554513e79e91b2d0 Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-scrnaseq/r-bioc-scrnaseq_2.4.0+ds-3_all.deb Size: 208296 MD5sum: eb8698ce014e15001850ebe88aee5d11 SHA256: 8941d2e520d92be0ca9d319e155d2f29d0609a7939d2a6bf546f4436662517f2 [testing] Package: r-bioc-scrnaseq Version: 2.12.0+ds-1 Installed-Size: 720 Maintainer: Debian R Packages Maintainers Architecture: all Depends: r-base-core (>= 4.2.2.20221110-1), r-api-4.0, r-api-bioc-3.16, r-bioc-singlecellexperiment, r-bioc-biocgenerics, r-bioc-s4vectors, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-experimenthub (>= 2.3.4), r-bioc-annotationhub (>= 3.3.6), r-bioc-annotationdbi, r-bioc-ensembldb, r-bioc-genomicfeatures Suggests: r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown, r-bioc-biocfilecache, r-cran-testthat, r-cran-rappdirs Description: Collection of Public Single-Cell RNA-Seq Datasets Homepage: https://bioconductor.org/packages/data/experiment/scRNAseq/ Description-md5: a469441afa6957bf554513e79e91b2d0 Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-scrnaseq/r-bioc-scrnaseq_2.12.0+ds-1_all.deb Size: 285656 MD5sum: bb5dcf31eb817937f9d6c45cdfdf22ad SHA256: 64ea980700a20f35d14e573d0b2276e92931ce4b5b474383c562239ef6e2478a [sid] Package: r-bioc-scrnaseq Version: 2.16.0+ds-1 Installed-Size: 720 Maintainer: Debian R Packages Maintainers Architecture: all Depends: r-api-4.0, r-api-bioc-3.18, r-bioc-singlecellexperiment, r-bioc-biocgenerics, r-bioc-s4vectors, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-experimenthub (>= 2.3.4), r-bioc-annotationhub (>= 3.3.6), r-bioc-annotationdbi, r-bioc-ensembldb, r-bioc-genomicfeatures Suggests: r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown, r-bioc-biocfilecache, r-cran-testthat, r-cran-rappdirs Description: Collection of Public Single-Cell RNA-Seq Datasets Homepage: https://bioconductor.org/packages/data/experiment/scRNAseq/ Description-md5: a469441afa6957bf554513e79e91b2d0 Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-scrnaseq/r-bioc-scrnaseq_2.16.0+ds-1_all.deb Size: 286656 MD5sum: a06be18301b7cf618fab86441b73d64f SHA256: 112ee93d6331ff8f1d35cd78e5c76aa65384c2ab7fbe4a25a5529766a32f901c Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat --apt r-bioc-scrnaseq=2.16.0+ds-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.3.1~202401311821~1.3-2-g28295102 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat --apt r-bioc-scrnaseq=2.16.0+ds-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpym7b3fk9 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpym7b3fk9 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9/dev/pts'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9/dev/pts'] 0m0.4s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9/dev/ptmx'] 0m0.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpym7b3fk9/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', 'update'] 0m1.5s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Reading package lists... 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', 'update'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', '-yf', 'dist-upgrade'] 0m1.9s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', '-yf', 'dist-upgrade'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.3s DUMP: 29fcf27583012b383113cec2bf757015 - 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.3s INFO: Running scripts post_setup 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_setup_dummy_users'] 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_setup_dummy_users'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_setup_forbid_home'] 0m3.3s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_setup_forbid_home'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.4s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_setup_minimize'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_setup_minimize'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_setup_zz_backports'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_setup_zz_backports'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.4s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u9 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u8 install ok installed libc6:amd64 libc6 2.31-13+deb11u8 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.4s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat 0m3.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9'] 0m4.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9'] 0m4.1s INFO: Running scripts is_testable 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/is_testable_uninstallable'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/is_testable_uninstallable'] 0m4.1s INFO: Running scripts pre_test 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_test_exceptions'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_test_exceptions'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_test_root_password'] 0m4.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_test_root_password'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-scrnaseq'] 0m4.4s DUMP: Package: r-bioc-scrnaseq Version: 2.4.0+ds-3 Installed-Size: 511 Maintainer: Debian R Packages Maintainers Architecture: all Depends: r-base-core (>= 4.0.3-1), r-api-4.0, r-api-bioc-3.12, r-bioc-singlecellexperiment, r-bioc-biocgenerics, r-bioc-s4vectors, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-experimenthub, r-bioc-annotationhub, r-bioc-annotationdbi, r-bioc-ensembldb, r-bioc-genomicfeatures Suggests: r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown, r-bioc-biocfilecache, r-cran-testthat Description-en: Collection of Public Single-Cell RNA-Seq Datasets Gene-level counts for a collection of public scRNA-seq datasets, provided as SingleCellExperiment objects with cell- and gene-level metadata. Description-md5: a469441afa6957bf554513e79e91b2d0 Homepage: https://bioconductor.org/packages/data/experiment/scRNAseq/ Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-scrnaseq/r-bioc-scrnaseq_2.4.0+ds-3_all.deb Size: 208296 MD5sum: eb8698ce014e15001850ebe88aee5d11 SHA256: 8941d2e520d92be0ca9d319e155d2f29d0609a7939d2a6bf546f4436662517f2 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-scrnaseq'] 0m4.4s INFO: apt-cache knows about the following packages: r-bioc-scrnaseq 0m4.4s INFO: Running scripts pre_install 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_database-server'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_database-server'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_exceptions'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_exceptions'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_extras'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_extras'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-cache', 'policy'] 0m4.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.9,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-cache', 'policy'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-cache', 'policy', 'r-bioc-scrnaseq'] 0m4.5s DUMP: r-bioc-scrnaseq: Installed: (none) Candidate: 2.4.0+ds-3 Version table: 2.4.0+ds-3 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-cache', 'policy', 'r-bioc-scrnaseq'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', '-y', 'install', 'r-bioc-scrnaseq'] 0m41.9s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ca-certificates fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-glyphicons-halflings libasan6 libatomic1 libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcairo2 libcrypt-dev libcurl4 libdatrie1 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgcc-10-dev libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu67 libitm1 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-microplugin.js libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack3 libldap-2.4-2 liblsan0 libmd0 libnghttp2-14 libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16 libpsl5 libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh2-1 libstdc++-10-dev libtcl8.6 libthai-data libthai0 libtiff5 libtirpc-dev libtk8.6 libtsan0 libubsan1 libuv1 libwebp6 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 linux-libc-dev littler node-html5shiv node-normalize.css openssl r-base-core r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biocversion r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray r-bioc-ensembldb r-bioc-experimenthub r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-singlecellexperiment r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-assertthat r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli r-cran-commonmark r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-fansi r-cran-fastmap r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-jsonlite r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rsqlite r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml readline-common sensible-utils ucf unzip x11-common xdg-utils zip zlib1g-dev Suggested packages: libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev glibc-doc manpages-dev libjs-jquery-ui-docs libstdc++-10-doc tcl8.6 tk8.6 nodejs elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-bioc-org.hs.eg.db r-bioc-graph r-bioc-biocstyle r-cran-knitr r-bioc-variantannotation r-bioc-all r-cran-rmarkdown r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc r-bioc-shortread r-cran-codetools r-cran-data.table r-cran-testthat r-bioc-bsgenome r-bioc-hdf5array r-bioc-genefilter r-bioc-delayedmatrixstats r-cran-runit r-bioc-gviz r-bioc-edger r-bioc-dexseq r-bioc-sparsematrixstats r-bioc-limma r-cran-rtsne r-bioc-rhdf5 r-cran-covr r-cran-remotes r-cran-roxygen2 r-cran-callr r-cran-ps r-cran-rstudioapi r-cran-prettycode r-cran-ggplot2 r-cran-rmysql r-cran-bench r-cran-broom r-cran-rpostgresql r-cran-testit r-cran-unitizer r-cran-r.utils r-cran-forcats r-cran-lubridate r-cran-cairo r-cran-ragg r-cran-jpeg r-cran-png r-cran-readr r-cran-plyr r-cran-sf r-cran-getopt r-cran-scales r-cran-inline r-cran-gh r-cran-rvest r-cran-markdown r-cran-rmpi r-cran-rsprng r-cran-rlecuyer r-cran-evaluate r-cran-formattable r-cran-tidyr r-cran-zeallot r-cran-plm r-cran-zoo r-cran-survival readline-doc Recommended packages: manpages manpages-dev libc-devtools libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libldap-common publicsuffix libsasl2-modules r-recommended r-base-dev r-doc-html r-bioc-go.db r-cran-runit r-cran-testthat r-cran-batchjobs r-cran-doparallel r-cran-batchtools r-cran-rmpi r-bioc-shortread r-bioc-annotate r-cran-mockery r-cran-webutils r-cran-rmysql r-cran-rpostgresql r-cran-tidyr r-cran-data.table r-cran-mass r-cran-testit r-cran-codetools r-cran-survival r-cran-pkgload r-cran-markdown r-cran-sp r-cran-sodium r-cran-lubridate r-cran-future r-cran-rmarkdown r-cran-dbitest r-cran-ggplot2 r-cran-dygraphs r-cran-knitr r-cran-mockr r-cran-waldo libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ca-certificates fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-glyphicons-halflings libasan6 libatomic1 libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcairo2 libcrypt-dev libcurl4 libdatrie1 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgcc-10-dev libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu67 libitm1 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-microplugin.js libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack3 libldap-2.4-2 liblsan0 libmd0 libnghttp2-14 libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16 libpsl5 libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh2-1 libstdc++-10-dev libtcl8.6 libthai-data libthai0 libtiff5 libtirpc-dev libtk8.6 libtsan0 libubsan1 libuv1 libwebp6 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 linux-libc-dev littler node-html5shiv node-normalize.css openssl r-base-core r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biocversion r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray r-bioc-ensembldb r-bioc-experimenthub r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-scrnaseq r-bioc-singlecellexperiment r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-assertthat r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli r-cran-commonmark r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-fansi r-cran-fastmap r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-jsonlite r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rsqlite r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml readline-common sensible-utils ucf unzip x11-common xdg-utils zip zlib1g-dev 0 upgraded, 213 newly installed, 0 to remove and 0 not upgraded. Need to get 180 MB of archives. After this operation, 525 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 node-normalize.css all 8.0.1-3 [12.5 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1w-0+deb11u1 [859 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1+deb11u1 [418 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 fontconfig amd64 2.13.1-4.2 [417 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-2 [164 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libasan6 amd64 10.2.1-6 [2065 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 libatomic1 amd64 10.2.1-6 [9008 B] Get:20 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3+deb11u1 [153 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 libgomp1 amd64 10.2.1-6 [99.9 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 libitm1 amd64 10.2.1-6 [25.8 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 liblsan0 amd64 10.2.1-6 [828 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 libtsan0 amd64 10.2.1-6 [2000 kB] Get:25 http://deb.debian.org/debian bullseye/main amd64 libubsan1 amd64 10.2.1-6 [777 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 libquadmath0 amd64 10.2.1-6 [145 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 libgcc-10-dev amd64 10.2.1-6 [2328 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 libc-dev-bin amd64 2.31-13+deb11u8 [276 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 linux-libc-dev amd64 5.10.209-2 [1698 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 libcrypt-dev amd64 1:4.4.18-4 [104 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 libtirpc-dev amd64 1.3.1-1+deb11u1 [191 kB] Get:32 http://deb.debian.org/debian bullseye/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:33 http://deb.debian.org/debian bullseye/main amd64 libc6-dev amd64 2.31-13+deb11u8 [2361 kB] Get:34 http://deb.debian.org/debian bullseye/main amd64 libstdc++-10-dev amd64 10.2.1-6 [1741 kB] Get:35 http://deb.debian.org/debian bullseye/main amd64 libboost1.74-dev amd64 1.74.0-9 [9534 kB] Get:36 http://deb.debian.org/debian bullseye/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get:37 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get:38 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1+deb11u1 [108 kB] Get:39 http://deb.debian.org/debian bullseye/main amd64 libpixman-1-0 amd64 0.40.0-1.1~deb11u1 [543 kB] Get:40 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:41 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:42 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:43 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1+deb11u2 [311 kB] Get:44 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1+deb11u2 [772 kB] Get:45 http://deb.debian.org/debian bullseye/main amd64 libxcb-render0 amd64 1.14-3 [111 kB] Get:46 http://deb.debian.org/debian bullseye/main amd64 libxcb-shm0 amd64 1.14-3 [101 kB] Get:47 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get:48 http://deb.debian.org/debian bullseye/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:49 http://deb.debian.org/debian bullseye/main amd64 libcairo2 amd64 1.16.0-5 [694 kB] Get:50 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1+deb11u1 [69.1 kB] Get:51 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1+deb11u1 [106 kB] Get:52 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3+deb11u1 [232 kB] Get:53 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1+deb11u1 [77.2 kB] Get:54 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:55 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:56 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get:57 http://deb.debian.org/debian bullseye/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u11 [347 kB] Get:58 http://deb.debian.org/debian bullseye/main amd64 libdatrie1 amd64 0.2.13-1 [42.7 kB] Get:59 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get:60 http://deb.debian.org/debian bullseye/main amd64 libfribidi0 amd64 1.0.8-2+deb11u1 [64.9 kB] Get:61 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get:62 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-0 amd64 2.66.8-1+deb11u1 [1374 kB] Get:63 http://deb.debian.org/debian bullseye/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:64 http://deb.debian.org/debian bullseye/main amd64 libharfbuzz0b amd64 2.7.4-1 [1471 kB] Get:65 http://deb.debian.org/debian bullseye/main amd64 x11-common all 1:7.7+22 [252 kB] Get:66 http://deb.debian.org/debian bullseye/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:67 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:68 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:69 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get:70 http://deb.debian.org/debian bullseye/main amd64 libjs-bootstrap all 3.4.1+dfsg-2 [173 kB] Get:71 http://deb.debian.org/debian bullseye/main amd64 libjs-d3 all 3.5.17-4 [132 kB] Get:72 http://deb.debian.org/debian bullseye/main amd64 libjs-es5-shim all 4.5.15-1 [43.6 kB] Get:73 http://deb.debian.org/debian bullseye/main amd64 libjs-highlight.js all 9.18.5+dfsg1-1 [397 kB] Get:74 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get:75 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-datatables all 1.10.21+dfsg-2+deb11u1 [138 kB] Get:76 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] Get:77 http://deb.debian.org/debian bullseye/main amd64 libjs-sifter.js all 0.6.0+dfsg-1 [12.1 kB] Get:78 http://deb.debian.org/debian bullseye/main amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B] Get:79 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB] Get:80 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-ui all 1.12.1+dfsg-8+deb11u2 [232 kB] Get:81 http://deb.debian.org/debian bullseye/main amd64 libjs-json all 0~20190826+~1.0.5-2 [20.5 kB] Get:82 http://deb.debian.org/debian bullseye/main amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB] Get:83 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3+deb11u1 [2166 kB] Get:84 http://deb.debian.org/debian bullseye/main amd64 libthai-data all 0.1.28-3 [170 kB] Get:85 http://deb.debian.org/debian bullseye/main amd64 libthai0 amd64 0.1.28-3 [54.2 kB] Get:86 http://deb.debian.org/debian bullseye/main amd64 libpango-1.0-0 amd64 1.46.2-3 [191 kB] Get:87 http://deb.debian.org/debian bullseye/main amd64 libpangoft2-1.0-0 amd64 1.46.2-3 [62.2 kB] Get:88 http://deb.debian.org/debian bullseye/main amd64 libpangocairo-1.0-0 amd64 1.46.2-3 [50.6 kB] Get:89 http://deb.debian.org/debian bullseye/main amd64 libpaper1 amd64 1.1.28+b1 [21.6 kB] Get:90 http://deb.debian.org/debian bullseye/main amd64 libpaper-utils amd64 1.1.28+b1 [18.3 kB] Get:91 http://deb.debian.org/debian bullseye/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:92 http://deb.debian.org/debian bullseye/main amd64 libtcl8.6 amd64 8.6.11+dfsg-1 [1018 kB] Get:93 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1+deb11u2 [259 kB] Get:94 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1+deb11u5 [290 kB] Get:95 http://deb.debian.org/debian bullseye/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:96 http://deb.debian.org/debian bullseye/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:97 http://deb.debian.org/debian bullseye/main amd64 libtk8.6 amd64 8.6.11-2 [780 kB] Get:98 http://deb.debian.org/debian bullseye/main amd64 libuv1 amd64 1.40.0-2 [132 kB] Get:99 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get:100 http://deb.debian.org/debian bullseye/main amd64 libxt6 amd64 1:1.2.0-1 [189 kB] Get:101 http://deb.debian.org/debian bullseye/main amd64 zip amd64 3.0-12 [232 kB] Get:102 http://deb.debian.org/debian bullseye/main amd64 unzip amd64 6.0-26+deb11u1 [172 kB] Get:103 http://deb.debian.org/debian bullseye/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get:104 http://deb.debian.org/debian bullseye/main amd64 r-base-core amd64 4.0.4-1 [25.1 MB] Get:105 http://deb.debian.org/debian bullseye/main amd64 r-cran-littler amd64 0.3.12-1 [95.9 kB] Get:106 http://deb.debian.org/debian bullseye/main amd64 littler all 0.3.12-1 [15.6 kB] Get:107 http://deb.debian.org/debian bullseye/main amd64 node-html5shiv all 3.7.3+dfsg-3 [12.9 kB] Get:108 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biocgenerics all 0.36.0-1 [648 kB] Get:109 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biobase amd64 2.50.0-1 [2229 kB] Get:110 http://deb.debian.org/debian bullseye/main amd64 r-bioc-s4vectors amd64 0.28.1-1 [2027 kB] Get:111 http://deb.debian.org/debian bullseye/main amd64 r-bioc-iranges amd64 2.24.1-1 [2202 kB] Get:112 http://deb.debian.org/debian bullseye/main amd64 r-cran-dbi all 1.1.1-1 [619 kB] Get:113 http://deb.debian.org/debian bullseye/main amd64 r-cran-bit amd64 4.0.4+dfsg-1 [422 kB] Get:114 http://deb.debian.org/debian bullseye/main amd64 r-cran-bit64 amd64 4.0.5-1 [463 kB] Get:115 http://deb.debian.org/debian bullseye/main amd64 r-cran-rlang amd64 0.4.10-1 [1176 kB] Get:116 http://deb.debian.org/debian bullseye/main amd64 r-cran-ellipsis amd64 0.3.1-1 [31.7 kB] Get:117 http://deb.debian.org/debian bullseye/main amd64 r-cran-digest amd64 0.6.27-1 [192 kB] Get:118 http://deb.debian.org/debian bullseye/main amd64 r-cran-glue amd64 1.4.2-1 [138 kB] Get:119 http://deb.debian.org/debian bullseye/main amd64 r-cran-vctrs amd64 0.3.6-1 [1107 kB] Get:120 http://deb.debian.org/debian bullseye/main amd64 r-cran-blob all 1.2.1-2 [49.1 kB] Get:121 http://deb.debian.org/debian bullseye/main amd64 r-cran-fastmap amd64 1.1.0-1 [64.7 kB] Get:122 http://deb.debian.org/debian bullseye/main amd64 r-cran-cachem amd64 1.0.3-1 [61.4 kB] Get:123 http://deb.debian.org/debian bullseye/main amd64 r-cran-memoise all 2.0.0-1 [52.9 kB] Get:124 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get:125 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgkitten all 0.2.1-1 [26.5 kB] Get:126 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcpp amd64 1.0.6-1 [2035 kB] Get:127 http://deb.debian.org/debian bullseye/main amd64 r-cran-bh all 1.74.0-1 [5196 B] Get:128 http://deb.debian.org/debian bullseye/main amd64 r-cran-plogr all 0.2.0-3 [14.9 kB] Get:129 http://deb.debian.org/debian bullseye/main amd64 r-cran-rsqlite amd64 2.2.3-1 [1035 kB] Get:130 http://deb.debian.org/debian bullseye/main amd64 r-bioc-annotationdbi all 1.52.0-1 [4707 kB] Get:131 http://deb.debian.org/debian bullseye/main amd64 r-cran-bitops amd64 1.0-6-5 [23.6 kB] Get:132 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcurl amd64 1.98-1.2-1+b1 [787 kB] Get:133 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomeinfodbdata all 1.2.4-1 [10.7 MB] Get:134 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomeinfodb all 1.26.2-2 [3905 kB] Get:135 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2+deb11u2 [191 kB] Get:136 http://deb.debian.org/debian bullseye/main amd64 r-bioc-zlibbioc all 1.36.0+dfsg-1 [8824 B] Get:137 http://deb.debian.org/debian bullseye/main amd64 r-bioc-xvector amd64 0.30.0-1 [620 kB] Get:138 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomicranges amd64 1.42.0+dfsg-1 [1856 kB] Get:139 http://deb.debian.org/debian bullseye/main amd64 r-cran-lazyeval amd64 0.2.2-1+b1 [142 kB] Get:140 http://deb.debian.org/debian bullseye/main amd64 r-bioc-annotationfilter all 1.14.0+dfsg-1 [229 kB] Get:141 http://deb.debian.org/debian bullseye/main amd64 r-cran-assertthat all 0.2.1-2 [56.5 kB] Get:142 http://deb.debian.org/debian bullseye/main amd64 r-cran-generics all 0.1.0-1 [73.5 kB] Get:143 http://deb.debian.org/debian bullseye/main amd64 r-cran-lifecycle all 0.2.0-2 [93.2 kB] Get:144 http://deb.debian.org/debian bullseye/main amd64 r-cran-magrittr amd64 2.0.1-1 [198 kB] Get:145 http://deb.debian.org/debian bullseye/main amd64 r-cran-r6 all 2.5.0-1 [104 kB] Get:146 http://deb.debian.org/debian bullseye/main amd64 r-cran-cli all 2.3.0-1 [480 kB] Get:147 http://deb.debian.org/debian bullseye/main amd64 r-cran-crayon all 1.4.0-1 [143 kB] Get:148 http://deb.debian.org/debian bullseye/main amd64 r-cran-fansi amd64 0.4.2-1 [345 kB] Get:149 http://deb.debian.org/debian bullseye/main amd64 r-cran-utf8 amd64 1.1.4-2 [131 kB] Get:150 http://deb.debian.org/debian bullseye/main amd64 r-cran-pillar all 1.4.7-1 [227 kB] Get:151 http://deb.debian.org/debian bullseye/main amd64 r-cran-tibble amd64 3.0.6+dfsg-1 [416 kB] Get:152 http://deb.debian.org/debian bullseye/main amd64 r-cran-purrr amd64 0.3.4-1+b1 [398 kB] Get:153 http://deb.debian.org/debian bullseye/main amd64 r-cran-tidyselect amd64 1.1.0+dfsg-1 [192 kB] Get:154 http://deb.debian.org/debian bullseye/main amd64 r-cran-dplyr amd64 1.0.4-1 [1143 kB] Get:155 http://deb.debian.org/debian bullseye/main amd64 r-cran-withr all 2.4.1-1 [210 kB] Get:156 http://deb.debian.org/debian bullseye/main amd64 r-cran-dbplyr all 2.1.0-1 [802 kB] Get:157 http://deb.debian.org/debian bullseye/main amd64 r-cran-rappdirs amd64 0.3.3-1 [47.4 kB] Get:158 http://deb.debian.org/debian bullseye/main amd64 r-cran-curl amd64 4.3+dfsg-1+b1 [151 kB] Get:159 http://deb.debian.org/debian bullseye/main amd64 r-cran-jsonlite amd64 1.7.2+dfsg-1 [447 kB] Get:160 http://deb.debian.org/debian bullseye/main amd64 r-cran-mime amd64 0.9-1+b1 [35.5 kB] Get:161 http://deb.debian.org/debian bullseye/main amd64 r-cran-sys amd64 3.4-1 [42.9 kB] Get:162 http://deb.debian.org/debian bullseye/main amd64 r-cran-askpass amd64 1.1-2 [22.2 kB] Get:163 http://deb.debian.org/debian bullseye/main amd64 r-cran-openssl amd64 1.4.3+dfsg-2 [376 kB] Get:164 http://deb.debian.org/debian bullseye/main amd64 r-cran-httr all 1.4.2-1 [478 kB] Get:165 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biocfilecache all 1.14.0+dfsg-1 [289 kB] Get:166 http://deb.debian.org/debian bullseye/main amd64 r-cran-biocmanager all 1.30.10+dfsg-2 [94.8 kB] Get:167 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biocversion all 3.12.0-1 [10.3 kB] Get:168 http://deb.debian.org/debian bullseye/main amd64 r-cran-later amd64 1.1.0.1+dfsg-1 [119 kB] Get:169 http://deb.debian.org/debian bullseye/main amd64 r-cran-promises amd64 1.1.1+dfsg-1 [172 kB] Get:170 http://deb.debian.org/debian bullseye/main amd64 r-cran-httpuv amd64 1.5.5+dfsg-1 [491 kB] Get:171 http://deb.debian.org/debian bullseye/main amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get:172 http://deb.debian.org/debian bullseye/main amd64 r-cran-base64enc amd64 0.1-3-3 [27.9 kB] Get:173 http://deb.debian.org/debian bullseye/main amd64 r-cran-htmltools amd64 0.5.1.1-1 [241 kB] Get:174 http://deb.debian.org/debian bullseye/main amd64 r-cran-sourcetools amd64 0.1.7-3 [45.3 kB] Get:175 http://deb.debian.org/debian bullseye/main amd64 r-cran-commonmark amd64 1.7-2 [111 kB] Get:176 http://deb.debian.org/debian bullseye/main amd64 r-cran-shiny all 1.5.0+dfsg-2 [3599 kB] Get:177 http://deb.debian.org/debian bullseye/main amd64 r-cran-yaml amd64 2.2.1-1+b1 [104 kB] Get:178 http://deb.debian.org/debian bullseye/main amd64 r-cran-htmlwidgets all 1.5.3+dfsg-1 [124 kB] Get:179 http://deb.debian.org/debian bullseye/main amd64 r-cran-crosstalk all 1.1.1+dfsg-2 [167 kB] Get:180 http://deb.debian.org/debian bullseye/main amd64 r-cran-dt all 0.17+dfsg-3 [209 kB] Get:181 http://deb.debian.org/debian bullseye/main amd64 r-bioc-interactivedisplaybase all 1.28.0+dfsg-1 [30.0 kB] Get:182 http://deb.debian.org/debian bullseye/main amd64 r-bioc-annotationhub all 2.22.0+dfsg-1 [422 kB] Get:183 http://deb.debian.org/debian bullseye/main amd64 r-cran-formatr all 1.7-2 [151 kB] Get:184 http://deb.debian.org/debian bullseye/main amd64 r-cran-lambda.r all 1.2.4-2 [118 kB] Get:185 http://deb.debian.org/debian bullseye/main amd64 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get:186 http://deb.debian.org/debian bullseye/main amd64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get:187 http://deb.debian.org/debian bullseye/main amd64 r-cran-snow all 1:0.4.3-2 [109 kB] Get:188 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biocparallel amd64 1.24.1-1 [1143 kB] Get:189 http://deb.debian.org/debian bullseye/main amd64 r-cran-xml amd64 3.99-0.5-1 [1722 kB] Get:190 http://deb.debian.org/debian bullseye/main amd64 r-cran-hms all 1.0.0-1 [102 kB] Get:191 http://deb.debian.org/debian bullseye/main amd64 r-cran-prettyunits all 1.1.1-2 [39.1 kB] Get:192 http://deb.debian.org/debian bullseye/main amd64 r-cran-progress all 1.2.2-2 [88.9 kB] Get:193 http://deb.debian.org/debian bullseye/main amd64 r-cran-stringi amd64 1.5.3-1 [729 kB] Get:194 http://deb.debian.org/debian bullseye/main amd64 r-cran-stringr all 1.4.0-2 [199 kB] Get:195 http://deb.debian.org/debian bullseye/main amd64 r-cran-xml2 amd64 1.3.2-1+b1 [270 kB] Get:196 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biomart all 2.46.2+dfsg-1 [414 kB] Get:197 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biostrings amd64 2.58.0-1 [14.2 MB] Get:198 http://deb.debian.org/debian bullseye/main amd64 r-cran-lattice amd64 0.20-41-1+b1 [1164 kB] Get:199 http://deb.debian.org/debian bullseye/main amd64 r-cran-matrix amd64 1.3-2-1 [3604 kB] Get:200 http://deb.debian.org/debian bullseye/main amd64 r-cran-matrixstats amd64 0.58.0-3 [664 kB] Get:201 http://deb.debian.org/debian bullseye/main amd64 r-bioc-matrixgenerics all 1.2.1-4 [288 kB] Get:202 http://deb.debian.org/debian bullseye/main amd64 r-bioc-delayedarray amd64 0.16.1+dfsg-1 [1798 kB] Get:203 http://deb.debian.org/debian bullseye/main amd64 r-bioc-rhtslib amd64 1.22.0+dfsg-1 [1024 kB] Get:204 http://deb.debian.org/debian bullseye/main amd64 r-bioc-rsamtools amd64 2.6.0-1 [3659 kB] Get:205 http://deb.debian.org/debian bullseye/main amd64 r-bioc-summarizedexperiment all 1.20.0+dfsg-1 [1955 kB] Get:206 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomicalignments amd64 1.26.0-1 [2196 kB] Get:207 http://deb.debian.org/debian bullseye/main amd64 r-bioc-rtracklayer amd64 1.50.0-1 [7467 kB] Get:208 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomicfeatures all 1.42.1+dfsg-1 [1834 kB] Get:209 http://deb.debian.org/debian bullseye/main amd64 r-bioc-protgenerics all 1.22.0-1 [84.9 kB] Get:210 http://deb.debian.org/debian bullseye/main amd64 r-bioc-ensembldb all 2.14.0+dfsg-1 [1502 kB] Get:211 http://deb.debian.org/debian bullseye/main amd64 r-bioc-experimenthub all 1.16.0+ds-1 [76.5 kB] Get:212 http://deb.debian.org/debian bullseye/main amd64 r-bioc-singlecellexperiment all 1.12.0+ds-1 [758 kB] Get:213 http://deb.debian.org/debian bullseye/main amd64 r-bioc-scrnaseq all 2.4.0+ds-3 [208 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 180 MB in 2s (96.6 MB/s) Selecting previously unselected package node-normalize.css. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6672 files and directories currently installed.) Preparing to unpack .../000-node-normalize.css_8.0.1-3_all.deb ... Unpacking node-normalize.css (8.0.1-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. 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Preparing to unpack .../209-r-bioc-ensembldb_2.14.0+dfsg-1_all.deb ... Unpacking r-bioc-ensembldb (2.14.0+dfsg-1) ... Selecting previously unselected package r-bioc-experimenthub. Preparing to unpack .../210-r-bioc-experimenthub_1.16.0+ds-1_all.deb ... Unpacking r-bioc-experimenthub (1.16.0+ds-1) ... Selecting previously unselected package r-bioc-singlecellexperiment. Preparing to unpack .../211-r-bioc-singlecellexperiment_1.12.0+ds-1_all.deb ... Unpacking r-bioc-singlecellexperiment (1.12.0+ds-1) ... Selecting previously unselected package r-bioc-scrnaseq. Preparing to unpack .../212-r-bioc-scrnaseq_2.4.0+ds-3_all.deb ... Unpacking r-bioc-scrnaseq (2.4.0+ds-3) ... Setting up libexpat1:amd64 (2.2.10-2+deb11u5) ... Setting up libjs-json (0~20190826+~1.0.5-2) ... Setting up libgraphite2-3:amd64 (1.3.14-1) ... Setting up libpixman-1-0:amd64 (0.40.0-1.1~deb11u1) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up libicu67:amd64 (67.1-7) ... Setting up libdatrie1:amd64 (0.2.13-1) ... Setting up libglib2.0-0:amd64 (2.66.8-1+deb11u1) ... No schema files found: doing nothing. Setting up libjs-sifter.js (0.6.0+dfsg-1) ... Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-2) ... Setting up unzip (6.0-26+deb11u1) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up node-html5shiv (3.7.3+dfsg-3) ... Setting up libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Setting up libdeflate0:amd64 (1.7-1) ... Setting up linux-libc-dev:amd64 (5.10.209-2) ... Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... Setting up libgomp1:amd64 (10.2.1-6) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libasan6:amd64 (10.2.1-6) ... Setting up libjs-es5-shim (4.5.15-1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up zip (3.0-12) ... Setting up libblas3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libtirpc-dev:amd64 (1.3.1-1+deb11u1) ... Setting up libuv1:amd64 (1.40.0-2) ... Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up libx11-data (2:1.7.2-1+deb11u2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libfribidi0:amd64 (1.0.8-2+deb11u1) ... Setting up libquadmath0:amd64 (10.2.1-6) ... Setting up libjs-d3 (3.5.17-4) ... Setting up libpng16-16:amd64 (1.6.37-3) ... Setting up libatomic1:amd64 (10.2.1-6) ... Setting up libtcl8.6:amd64 (8.6.11+dfsg-1) ... Setting up libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up libubsan1:amd64 (10.2.1-6) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up libjs-highlight.js (9.18.5+dfsg1-1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.14) ... Setting up libcrypt-dev:amd64 (1:4.4.18-4) ... Setting up libthai-data (0.1.28-3) ... Setting up libssh2-1:amd64 (1.9.0-2) ... Setting up libtiff5:amd64 (4.2.0-1+deb11u5) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libc-dev-bin (2.31-13+deb11u8) ... Setting up openssl (1.1.1w-0+deb11u1) ... Setting up libbsd0:amd64 (0.11.3-1+deb11u1) ... Setting up node-normalize.css (8.0.1-3) ... Setting up readline-common (8.1-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liblsan0:amd64 (10.2.1-6) ... Setting up libjs-bootstrap (3.4.1+dfsg-2) ... Setting up libitm1:amd64 (10.2.1-6) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Setting up libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... Setting up libtsan0:amd64 (10.2.1-6) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3) ... Setting up libxcb-render0:amd64 (1.14-3) ... Setting up libgcc-10-dev:amd64 (10.2.1-6) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Setting up libxcb-shm0:amd64 (1.14-3) ... Setting up libjs-jquery-datatables (1.10.21+dfsg-2+deb11u1) ... Setting up libthai0:amd64 (0.1.28-3) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libjs-jquery-ui (1.12.1+dfsg-8+deb11u2) ... Setting up libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Setting up ucf (3.0043) ... Setting up libcurl4:amd64 (7.74.0-1.3+deb11u11) ... Setting up libc6-dev:amd64 (2.31-13+deb11u8) ... Setting up libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Setting up libharfbuzz0b:amd64 (2.7.4-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libpaper1:amd64 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up libstdc++-10-dev:amd64 (10.2.1-6) ... Setting up libboost1.74-dev:amd64 (1.74.0-9) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up libxext6:amd64 (2:1.3.3-1.1) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up libxt6:amd64 (1:1.2.0-1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u2) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up r-cran-bh (1.74.0-1) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.2-2) ... Setting up libtk8.6:amd64 (8.6.11-2) ... Setting up libpango-1.0-0:amd64 (1.46.2-3) ... Setting up libcairo2:amd64 (1.16.0-5) ... Setting up libpangoft2-1.0-0:amd64 (1.46.2-3) ... Setting up libpangocairo-1.0-0:amd64 (1.46.2-3) ... Setting up r-base-core (4.0.4-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.4.0-1) ... Setting up r-cran-sourcetools (0.1.7-3) ... Setting up r-cran-futile.options (1.0.1-3) ... Setting up r-cran-lattice (0.20-41-1+b1) ... Setting up r-cran-formatr (1.7-2) ... Setting up r-cran-xml (3.99-0.5-1) ... Setting up r-cran-lazyeval (0.2.2-1+b1) ... Setting up r-cran-commonmark (1.7-2) ... Setting up r-cran-r6 (2.5.0-1) ... Setting up r-cran-pkgkitten (0.2.1-1) ... Setting up r-cran-magrittr (2.0.1-1) ... Setting up r-cran-rappdirs (0.3.3-1) ... Setting up r-bioc-genomeinfodbdata (1.2.4-1) ... Setting up r-cran-littler (0.3.12-1) ... Setting up r-cran-rcpp (1.0.6-1) ... Setting up r-cran-curl (4.3+dfsg-1+b1) ... Setting up r-bioc-biocgenerics (0.36.0-1) ... Setting up r-cran-rlang (0.4.10-1) ... Setting up r-cran-matrixstats (0.58.0-3) ... Setting up r-cran-assertthat (0.2.1-2) ... Setting up littler (0.3.12-1) ... Setting up r-bioc-matrixgenerics (1.2.1-4) ... Setting up r-cran-sys (3.4-1) ... Setting up r-cran-plogr (0.2.0-3) ... Setting up r-cran-withr (2.4.1-1) ... Setting up r-cran-mime (0.9-1+b1) ... Setting up r-cran-generics (0.1.0-1) ... Setting up r-cran-base64enc (0.1-3-3) ... Setting up r-cran-digest (0.6.27-1) ... Setting up r-cran-yaml (2.2.1-1+b1) ... Setting up r-cran-lambda.r (1.2.4-2) ... Setting up r-cran-xml2 (1.3.2-1+b1) ... Setting up r-bioc-protgenerics (1.22.0-1) ... Setting up r-cran-dbi (1.1.1-1) ... Setting up r-cran-prettyunits (1.1.1-2) ... Setting up r-cran-fansi (0.4.2-1) ... Setting up r-cran-snow (1:0.4.3-2) ... Setting up r-cran-glue (1.4.2-1) ... Setting up r-cran-bit (4.0.4+dfsg-1) ... Setting up r-cran-xtable (1:1.8-4-2) ... Setting up r-cran-cli (2.3.0-1) ... Setting up r-cran-lifecycle (0.2.0-2) ... Setting up r-cran-bitops (1.0-6-5) ... Setting up r-bioc-biocversion (3.12.0-1) ... Setting up r-cran-bit64 (4.0.5-1) ... Setting up r-cran-biocmanager (1.30.10+dfsg-2) ... Setting up r-bioc-zlibbioc (1.36.0+dfsg-1) ... Setting up r-cran-askpass (1.1-2) ... Setting up r-cran-fastmap (1.1.0-1) ... Setting up r-bioc-biobase (2.50.0-1) ... Setting up r-cran-jsonlite (1.7.2+dfsg-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-utf8 (1.1.4-2) ... Setting up r-cran-stringi (1.5.3-1) ... Setting up r-bioc-s4vectors (0.28.1-1) ... Setting up r-cran-futile.logger (1.4.3-4) ... Setting up r-cran-purrr (0.3.4-1+b1) ... Setting up r-cran-later (1.1.0.1+dfsg-1) ... Setting up r-cran-matrix (1.3-2-1) ... Setting up r-cran-htmltools (0.5.1.1-1) ... Setting up r-cran-cachem (1.0.3-1) ... Setting up r-bioc-iranges (2.24.1-1) ... Setting up r-cran-rcurl (1.98-1.2-1+b1) ... Setting up r-bioc-delayedarray (0.16.1+dfsg-1) ... Setting up r-cran-ellipsis (0.3.1-1) ... Setting up r-cran-openssl (1.4.3+dfsg-2) ... Setting up r-cran-stringr (1.4.0-2) ... Setting up r-bioc-biocparallel (1.24.1-1) ... Setting up r-bioc-rhtslib (1.22.0+dfsg-1) ... Setting up r-cran-htmlwidgets (1.5.3+dfsg-1) ... Setting up r-bioc-genomeinfodb (1.26.2-2) ... Setting up r-cran-httr (1.4.2-1) ... Setting up r-cran-memoise (2.0.0-1) ... Setting up r-cran-promises (1.1.1+dfsg-1) ... Setting up r-bioc-xvector (0.30.0-1) ... Setting up r-cran-vctrs (0.3.6-1) ... Setting up r-cran-pillar (1.4.7-1) ... Setting up r-bioc-genomicranges (1.42.0+dfsg-1) ... Setting up r-cran-httpuv (1.5.5+dfsg-1) ... Setting up r-bioc-biostrings (2.58.0-1) ... Setting up r-cran-tibble (3.0.6+dfsg-1) ... Setting up r-bioc-annotationfilter (1.14.0+dfsg-1) ... Setting up r-cran-shiny (1.5.0+dfsg-2) ... Setting up r-cran-tidyselect (1.1.0+dfsg-1) ... Setting up r-cran-hms (1.0.0-1) ... Setting up r-cran-blob (1.2.1-2) ... Setting up r-bioc-rsamtools (2.6.0-1) ... Setting up r-cran-dplyr (1.0.4-1) ... Setting up r-cran-dbplyr (2.1.0-1) ... Setting up r-cran-rsqlite (2.2.3-1) ... Setting up r-cran-progress (1.2.2-2) ... Setting up r-cran-crosstalk (1.1.1+dfsg-2) ... Setting up r-cran-dt (0.17+dfsg-3) ... Setting up r-bioc-summarizedexperiment (1.20.0+dfsg-1) ... Setting up r-bioc-biocfilecache (1.14.0+dfsg-1) ... Setting up r-bioc-annotationdbi (1.52.0-1) ... Setting up r-bioc-interactivedisplaybase (1.28.0+dfsg-1) ... Setting up r-bioc-annotationhub (2.22.0+dfsg-1) ... Setting up r-bioc-biomart (2.46.2+dfsg-1) ... Setting up r-bioc-genomicalignments (1.26.0-1) ... Setting up r-bioc-rtracklayer (1.50.0-1) ... Setting up r-bioc-singlecellexperiment (1.12.0+ds-1) ... Setting up r-bioc-genomicfeatures (1.42.1+dfsg-1) ... Setting up r-bioc-experimenthub (1.16.0+ds-1) ... Setting up r-bioc-ensembldb (2.14.0+dfsg-1) ... Setting up r-bioc-scrnaseq (2.4.0+ds-3) ... Processing triggers for libc-bin (2.31-13+deb11u8) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m41.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', '-y', 'install', 'r-bioc-scrnaseq'] 0m41.9s INFO: Running scripts post_install 0m41.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_install_exceptions'] 0m41.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_install_exceptions'] 0m41.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9'] 0m43.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9'] 0m43.9s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpym7b3fk9 to testing 0m43.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m43.9s INFO: Running scripts pre_distupgrade 0m43.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_distupgrade_exceptions'] 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_distupgrade_exceptions'] 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', 'update'] 0m47.6s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [151 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8786 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [6109 kB] Fetched 15.0 MB in 3s (5808 kB/s) Reading package lists... 0m47.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', 'update'] 0m47.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', '-yf', 'dist-upgrade'] 1m48.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: gcc-11-base libasan6 libgcc-10-dev libicu67 libldap-2.4-2 libstdc++-10-dev libtiff5 libtsan0 libwebp6 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libsemanage1 The following NEW packages will be installed: fonts-mathjax gcc-11-base gcc-12-base javascript-common libasan8 libcap2 libffi8 libfile-find-rule-perl libgcc-12-dev libgdbm-compat4 libgdbm6 libicu72 libjs-bootstrap4 libjs-mathjax libjs-modernizr libjs-popper.js libjs-prettify libldap-2.5-0 liblerc4 liblua5.3-0 libnumber-compare-perl libperl5.36 libsemanage2 libsepol2 libssl3 libstdc++-12-dev libtext-glob-perl libtiff6 libtsan2 libwebp7 libyaml-0-2 node-bootstrap-sass pandoc pandoc-data perl perl-modules-5.36 r-bioc-biocio r-bioc-keggrest r-cran-bslib r-cran-codetools r-cran-cpp11 r-cran-evaluate r-cran-filelock r-cran-fontawesome r-cran-fs r-cran-highr r-cran-jquerylib r-cran-knitr r-cran-png r-cran-restfulr r-cran-rjson r-cran-rmarkdown r-cran-sass r-cran-tinytex r-cran-xfun rpcsvc-proto usrmerge util-linux-extra The following packages will be upgraded: adduser apt base-files base-passwd bash bsdutils ca-certificates coreutils dash debconf debian-archive-keyring debianutils diffutils dpkg e2fsprogs findutils fontconfig fontconfig-config fonts-dejavu-core fonts-glyphicons-halflings gpgv grep gzip hostname init-system-helpers libacl1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libaudit-common libaudit1 libblas3 libblkid1 libboost1.74-dev libbrotli1 libbsd0 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcairo2 libcap-ng0 libcom-err2 libcrypt-dev libcrypt1 libcurl4 libdatrie1 libdb5.3 libdebconfclient0 libdeflate0 libexpat1 libext2fs2 libfontconfig1 libfreetype6 libfribidi0 libgcc-s1 libgcrypt20 libgfortran5 libglib2.0-0 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libharfbuzz0b libhogweed6 libidn2-0 libitm1 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-ui libjs-json libjs-sifter.js libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblsan0 liblz4-1 liblzma5 libmd0 libmount1 libnettle8 libnghttp2-14 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-8-0 libpcre3 libpixman-1-0 libpng16-16 libpsl5 libquadmath0 libreadline8 libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsmartcols1 libss2 libssh2-1 libstdc++6 libsystemd0 libtasn1-6 libtcl8.6 libthai-data libthai0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan0 libubsan1 libudev1 libunistring2 libuuid1 libuv1 libx11-6 libx11-data libxcb-render0 libxcb-shm0 libxcb1 libxext6 libxft2 libxml2 libxrender1 libxt6 libxxhash0 libzstd1 linux-libc-dev littler login logsave lsb-base mawk mount ncurses-base ncurses-bin node-html5shiv node-normalize.css openssl passwd perl-base r-base-core r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biocversion r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray r-bioc-ensembldb r-bioc-experimenthub r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-scrnaseq r-bioc-singlecellexperiment r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli r-cran-commonmark r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-fansi r-cran-fastmap r-cran-formatr r-cran-generics r-cran-glue r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-jsonlite r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgkitten r-cran-promises r-cran-purrr r-cran-r6 r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rsqlite r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xml r-cran-xml2 r-cran-yaml readline-common sed sensible-utils sysvinit-utils tar tzdata ucf unzip util-linux x11-common zip zlib1g zlib1g-dev 266 upgraded, 58 newly installed, 1 to remove and 0 not upgraded. Need to get 271 MB of archives. After this operation, 405 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 base-files amd64 12.4+deb12u5 [70.8 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libcrypt-dev amd64 1:4.4.33-2 [118 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libc6-dev amd64 2.36-9+deb12u4 [1897 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 libc-dev-bin amd64 2.36-9+deb12u4 [45.4 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libaudit-common all 1:3.0.9-1 [10.4 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libc6 amd64 2.36-9+deb12u4 [2748 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libc-bin amd64 2.36-9+deb12u4 [606 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libcap-ng0 amd64 0.8.3-1+b3 [17.1 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libaudit1 amd64 1:3.0.9-1 [46.8 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 perl-base amd64 5.36.0-7+deb12u1 [1608 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 debconf all 1.5.82 [121 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libpam0g amd64 1.5.2-6+deb12u1 [92.0 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libcrypt1 amd64 1:4.4.33-2 [89.5 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 linux-libc-dev amd64 6.1.76-1 [1930 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 gcc-12-base amd64 12.2.0-14 [37.5 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libgcc-s1 amd64 12.2.0-14 [49.9 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libblkid1 amd64 2.38.1-5+b1 [147 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libpcre2-8-0 amd64 10.42-1 [261 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 libselinux1 amd64 3.4-1+b6 [73.7 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libmount1 amd64 2.38.1-5+b1 [166 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 libsmartcols1 amd64 2.38.1-5+b1 [107 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 login amd64 1:4.13+dfsg1-1+b1 [616 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 util-linux-extra amd64 2.38.1-5+b1 [111 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 util-linux amd64 2.38.1-5+b1 [1177 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 liblzma5 amd64 5.4.1-0.2 [205 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libzstd1 amd64 1.5.4+dfsg2-5 [290 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 tar amd64 1.34+dfsg-1.2+deb12u1 [836 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 dpkg amd64 1.21.22 [1567 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 sysvinit-utils amd64 3.06-4 [31.0 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 lsb-base all 11.6 [4584 B] Get:32 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 debianutils amd64 5.7-0.5~deb12u1 [103 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 bash amd64 5.2.15-2+b2 [1491 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 bsdutils amd64 1:2.38.1-5+b1 [94.4 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 libgmp10 amd64 2:6.2.1+dfsg1-1.1 [563 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 coreutils amd64 9.1-1 [2897 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 dash amd64 0.5.12-2 [91.8 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 diffutils amd64 1:3.8-4 [352 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 findutils amd64 4.9.0-4 [636 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 grep amd64 3.8-5 [421 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 gzip amd64 1.12-1 [140 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 hostname amd64 3.23+nmu1 [10.5 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libtinfo6 amd64 6.4-4 [331 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 ncurses-bin amd64 6.4-4 [421 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 sed amd64 4.9-1 [329 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 libgpg-error0 amd64 1.46-1 [76.9 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 libgcrypt20 amd64 1.10.1-3 [696 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 libstdc++6 amd64 12.2.0-14 [614 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 libbz2-1.0 amd64 1.0.8-5+b1 [47.3 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 liblz4-1 amd64 1.9.4-1 [62.9 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 libcap2 amd64 1:2.66-4 [27.0 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 libsystemd0 amd64 252.22-1~deb12u1 [331 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 libudev1 amd64 252.22-1~deb12u1 [108 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 libxxhash0 amd64 0.8.1-1 [27.6 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 zlib1g amd64 1:1.2.13.dfsg-1 [86.7 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libapt-pkg6.0 amd64 2.6.1 [907 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 libnettle8 amd64 3.8.1-2 [288 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 libhogweed6 amd64 3.8.1-2 [328 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libunistring2 amd64 1.0-2 [437 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 libidn2-0 amd64 2.3.3-1+b1 [124 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libffi8 amd64 3.4.4-1 [22.9 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 libp11-kit0 amd64 0.24.1-2 [345 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 libtasn1-6 amd64 4.19.0-2 [56.6 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libgnutls30 amd64 3.7.9-2+deb12u2 [1404 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 libsemanage-common all 3.4-1 [21.6 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 libsepol2 amd64 3.4-2.1 [276 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 libsemanage2 amd64 3.4-1+b5 [89.9 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 passwd amd64 1:4.13+dfsg1-1+b1 [972 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 libpam-modules-bin amd64 1.5.2-6+deb12u1 [75.6 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 libpam-modules amd64 1.5.2-6+deb12u1 [291 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 adduser all 3.134 [183 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 gpgv amd64 2.2.40-1.1 [648 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 debian-archive-keyring all 2023.3+deb12u1 [161 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 libseccomp2 amd64 2.5.4-1+b3 [46.6 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 apt amd64 2.6.1 [1373 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 libdebconfclient0 amd64 0.270 [9900 B] Get:79 http://deb.debian.org/debian bookworm/main amd64 base-passwd amd64 3.6.1 [60.0 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.36 all 5.36.0-7+deb12u1 [2815 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.23-3 [72.2 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.23-3 [48.2 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 libdb5.3 amd64 5.3.28+dfsg2-1 [697 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 libperl5.36 amd64 5.36.0-7+deb12u1 [4218 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.36.0-7+deb12u1 [239 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:87 http://deb.debian.org/debian bookworm/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:88 http://deb.debian.org/debian bookworm/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 usrmerge all 37~deb12u1 [13.3 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 init-system-helpers all 1.65.2 [49.8 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 ncurses-base all 6.4-4 [261 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 logsave amd64 1.47.0-2 [19.6 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 libext2fs2 amd64 1.47.0-2 [205 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 e2fsprogs amd64 1.47.0-2 [571 kB] Get:95 http://deb.debian.org/debian bookworm/main amd64 mount amd64 2.38.1-5+b1 [134 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 libpam-runtime all 1.5.2-6+deb12u1 [161 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 libacl1 amd64 2.3.1-3 [31.5 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 libattr1 amd64 1:2.5.1-4 [22.2 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 libmd0 amd64 1.0.4-2 [29.5 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 libpcre3 amd64 2:8.39-15 [341 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 libuuid1 amd64 2.38.1-5+b1 [28.8 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 mawk amd64 1.3.4.20200120-3.1 [119 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 tzdata all 2024a-0+deb12u1 [297 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.11-1~deb12u2 [2019 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.11-1~deb12u2 [1419 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get:109 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:110 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get:111 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:114 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5 [399 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get:117 http://deb.debian.org/debian bookworm/main amd64 fontconfig amd64 2.14.1-4 [449 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 gcc-11-base amd64 11.3.0-12 [38.4 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 javascript-common all 11+nmu1 [6260 B] Get:122 http://deb.debian.org/debian bookworm/main amd64 libasan6 amd64 11.3.0-12 [2050 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 libasan8 amd64 12.2.0-14 [2195 kB] Get:124 http://deb.debian.org/debian bookworm/main amd64 libatomic1 amd64 12.2.0-14 [9328 B] Get:125 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:126 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-14 [116 kB] Get:127 http://deb.debian.org/debian bookworm/main amd64 libitm1 amd64 12.2.0-14 [26.1 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 liblsan0 amd64 12.2.0-14 [969 kB] Get:129 http://deb.debian.org/debian bookworm/main amd64 libtsan2 amd64 12.2.0-14 [2196 kB] Get:130 http://deb.debian.org/debian bookworm/main amd64 libubsan1 amd64 12.2.0-14 [883 kB] Get:131 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-14 [144 kB] Get:132 http://deb.debian.org/debian bookworm/main amd64 libgcc-12-dev amd64 12.2.0-14 [2437 kB] Get:133 http://deb.debian.org/debian bookworm/main amd64 libstdc++-12-dev amd64 12.2.0-14 [2046 kB] Get:134 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-21 [9508 kB] Get:135 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get:136 http://deb.debian.org/debian bookworm/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB] Get:137 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2+deb12u2 [292 kB] Get:138 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:139 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2+deb12u2 [760 kB] Get:140 http://deb.debian.org/debian bookworm/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get:141 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get:142 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:143 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:144 http://deb.debian.org/debian bookworm/main amd64 libcairo2 amd64 1.16.0-7 [575 kB] Get:145 http://deb.debian.org/debian bookworm/main amd64 libcom-err2 amd64 1.47.0-2 [19.8 kB] Get:146 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u1 [134 kB] Get:147 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u1 [332 kB] Get:148 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u1 [78.9 kB] Get:149 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u1 [32.4 kB] Get:150 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:151 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get:152 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get:153 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get:154 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1+deb12u1 [72.4 kB] Get:155 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get:156 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:157 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-10+deb12u5 [390 kB] Get:158 http://deb.debian.org/debian bookworm/main amd64 libdatrie1 amd64 0.2.13-2+b1 [43.3 kB] Get:159 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get:160 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get:161 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get:162 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB] Get:163 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get:164 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:165 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get:166 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get:167 http://deb.debian.org/debian bookworm/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get:168 http://deb.debian.org/debian bookworm/main amd64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get:169 http://deb.debian.org/debian bookworm/main amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB] Get:170 http://deb.debian.org/debian bookworm/main amd64 libjs-es5-shim all 4.6.7-2 [47.4 kB] Get:171 http://deb.debian.org/debian bookworm/main amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB] Get:172 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:173 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Get:174 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:175 http://deb.debian.org/debian bookworm/main amd64 libjs-json all 0~20221030+~1.0.8-1 [20.0 kB] Get:176 http://deb.debian.org/debian bookworm/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get:177 http://deb.debian.org/debian bookworm/main amd64 libjs-modernizr all 2.6.2+ds1-5 [47.1 kB] Get:178 http://deb.debian.org/debian bookworm/main amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB] Get:179 http://deb.debian.org/debian bookworm/main amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB] Get:180 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:181 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get:182 http://deb.debian.org/debian bookworm/main amd64 liblua5.3-0 amd64 5.3.6-2 [123 kB] Get:183 http://deb.debian.org/debian bookworm/main amd64 libpango-1.0-0 amd64 1.50.12+ds-1 [212 kB] Get:184 http://deb.debian.org/debian bookworm/main amd64 libpangocairo-1.0-0 amd64 1.50.12+ds-1 [34.2 kB] Get:185 http://deb.debian.org/debian bookworm/main amd64 libpangoft2-1.0-0 amd64 1.50.12+ds-1 [47.4 kB] Get:186 http://deb.debian.org/debian bookworm/main amd64 libthai-data all 0.1.29-1 [176 kB] Get:187 http://deb.debian.org/debian bookworm/main amd64 libthai0 amd64 0.1.29-1 [57.5 kB] Get:188 http://deb.debian.org/debian bookworm/main amd64 libpaper1 amd64 1.1.29 [12.5 kB] Get:189 http://deb.debian.org/debian bookworm/main amd64 libpaper-utils amd64 1.1.29 [8868 B] Get:190 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:191 http://deb.debian.org/debian bookworm/main amd64 libss2 amd64 1.47.0-2 [24.5 kB] Get:192 http://deb.debian.org/debian bookworm/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [1035 kB] Get:193 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.2+deb12u1 [286 kB] Get:194 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-6+deb12u1 [316 kB] Get:195 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:196 http://deb.debian.org/debian bookworm/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 kB] Get:197 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:198 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB] Get:199 http://deb.debian.org/debian bookworm/main amd64 libtk8.6 amd64 8.6.13-2 [781 kB] Get:200 http://deb.debian.org/debian bookworm/main amd64 libtsan0 amd64 11.3.0-12 [2016 kB] Get:201 http://deb.debian.org/debian bookworm/main amd64 libuv1 amd64 1.44.2-1 [140 kB] Get:202 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u1 [687 kB] Get:203 http://deb.debian.org/debian bookworm/main amd64 libxt6 amd64 1:1.2.1-1.1 [186 kB] Get:204 http://deb.debian.org/debian bookworm/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:205 http://deb.debian.org/debian bookworm/main amd64 zip amd64 3.0-13 [230 kB] Get:206 http://deb.debian.org/debian bookworm/main amd64 unzip amd64 6.0-28 [166 kB] Get:207 http://deb.debian.org/debian bookworm/main amd64 r-base-core amd64 4.2.2.20221110-2 [26.0 MB] Get:208 http://deb.debian.org/debian bookworm/main amd64 r-cran-littler amd64 0.3.17-1 [96.3 kB] Get:209 http://deb.debian.org/debian bookworm/main amd64 littler all 0.3.17-1 [14.4 kB] Get:210 http://deb.debian.org/debian bookworm/main amd64 node-bootstrap-sass all 3.4.3-2 [186 kB] Get:211 http://deb.debian.org/debian bookworm/main amd64 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Get:212 http://deb.debian.org/debian bookworm/main amd64 node-normalize.css all 8.0.1-5 [12.7 kB] Get:213 http://deb.debian.org/debian bookworm/main amd64 pandoc-data all 2.17.1.1-2~deb12u1 [418 kB] Get:214 http://deb.debian.org/debian bookworm/main amd64 pandoc amd64 2.17.1.1-2~deb12u1 [21.3 MB] Get:215 http://deb.debian.org/debian bookworm/main amd64 r-bioc-zlibbioc all 1.44.0+dfsg-1 [9200 B] Get:216 http://deb.debian.org/debian bookworm/main amd64 r-bioc-s4vectors amd64 0.36.1-1 [2026 kB] Get:217 http://deb.debian.org/debian bookworm/main amd64 r-bioc-iranges amd64 2.32.0-1 [2222 kB] Get:218 http://deb.debian.org/debian bookworm/main amd64 r-bioc-xvector amd64 0.38.0-1 [618 kB] Get:219 http://deb.debian.org/debian bookworm/main amd64 r-cran-matrixstats amd64 0.63.0-1 [470 kB] Get:220 http://deb.debian.org/debian bookworm/main amd64 r-bioc-matrixgenerics all 1.10.0-1 [302 kB] Get:221 http://deb.debian.org/debian bookworm/main amd64 r-cran-bitops amd64 1.0-7-1 [30.2 kB] Get:222 http://deb.debian.org/debian bookworm/main amd64 r-cran-rcurl amd64 1.98-1.10+dfsg-1 [783 kB] Get:223 http://deb.debian.org/debian bookworm/main amd64 r-bioc-genomeinfodbdata all 1.2.9-1 [11.7 MB] Get:224 http://deb.debian.org/debian bookworm/main amd64 r-bioc-genomeinfodb all 1.34.9-1 [3938 kB] Get:225 http://deb.debian.org/debian bookworm/main amd64 r-bioc-genomicranges amd64 1.50.2+dfsg-1 [1796 kB] Get:226 http://deb.debian.org/debian bookworm/main amd64 r-bioc-biobase amd64 2.58.0-2 [2112 kB] Get:227 http://deb.debian.org/debian bookworm/main amd64 r-cran-lattice amd64 0.20-45-3 [1177 kB] Get:228 http://deb.debian.org/debian bookworm/main amd64 r-cran-matrix amd64 1.5-3-1 [3822 kB] Get:229 http://deb.debian.org/debian bookworm/main amd64 r-bioc-delayedarray amd64 0.24.0+dfsg-1 [1937 kB] Get:230 http://deb.debian.org/debian bookworm/main amd64 r-bioc-summarizedexperiment all 1.28.0+dfsg-1 [2018 kB] Get:231 http://deb.debian.org/debian bookworm/main amd64 r-bioc-singlecellexperiment all 1.20.0+ds-1 [826 kB] Get:232 http://deb.debian.org/debian bookworm/main amd64 r-cran-rlang amd64 1.0.6-1 [1618 kB] Get:233 http://deb.debian.org/debian bookworm/main amd64 r-cran-cli amd64 3.6.0-1 [1287 kB] Get:234 http://deb.debian.org/debian bookworm/main amd64 r-cran-glue amd64 1.6.2-1 [152 kB] Get:235 http://deb.debian.org/debian bookworm/main amd64 r-cran-lifecycle all 1.0.3+dfsg-1 [109 kB] Get:236 http://deb.debian.org/debian bookworm/main amd64 r-cran-vctrs amd64 0.5.2-1 [1371 kB] Get:237 http://deb.debian.org/debian bookworm/main amd64 r-cran-blob all 1.2.3-1 [49.5 kB] Get:238 http://deb.debian.org/debian bookworm/main amd64 r-cran-dbi all 1.1.3-1 [687 kB] Get:239 http://deb.debian.org/debian bookworm/main amd64 r-cran-generics all 0.1.3-1 [81.4 kB] Get:240 http://deb.debian.org/debian bookworm/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB] Get:241 http://deb.debian.org/debian bookworm/main amd64 r-cran-r6 all 2.5.1-1 [105 kB] Get:242 http://deb.debian.org/debian bookworm/main amd64 r-cran-fansi amd64 1.0.4-1 [619 kB] Get:243 http://deb.debian.org/debian bookworm/main amd64 r-cran-utf8 amd64 1.2.3-1 [133 kB] Get:244 http://deb.debian.org/debian bookworm/main amd64 r-cran-pillar all 1.8.1+dfsg-1 [463 kB] Get:245 http://deb.debian.org/debian bookworm/main amd64 r-cran-tibble amd64 3.1.8+dfsg-1 [513 kB] Get:246 http://deb.debian.org/debian bookworm/main amd64 r-cran-withr all 2.5.0-1 [236 kB] Get:247 http://deb.debian.org/debian bookworm/main amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [219 kB] Get:248 http://deb.debian.org/debian bookworm/main amd64 r-cran-dplyr amd64 1.0.10-1 [1227 kB] Get:249 http://deb.debian.org/debian bookworm/main amd64 r-cran-purrr amd64 1.0.1-1 [507 kB] Get:250 http://deb.debian.org/debian bookworm/main amd64 r-cran-dbplyr all 2.3.0+dfsg-1 [1055 kB] Get:251 http://deb.debian.org/debian bookworm/main amd64 r-cran-fastmap amd64 1.1.1-1 [68.9 kB] Get:252 http://deb.debian.org/debian bookworm/main amd64 r-cran-cachem amd64 1.0.7-1 [71.6 kB] Get:253 http://deb.debian.org/debian bookworm/main amd64 r-cran-memoise all 2.0.1-1 [53.8 kB] Get:254 http://deb.debian.org/debian bookworm/main amd64 r-cran-pkgkitten all 0.2.2-2 [27.0 kB] Get:255 http://deb.debian.org/debian bookworm/main amd64 r-cran-rcpp amd64 1.0.10-1 [2059 kB] Get:256 http://deb.debian.org/debian bookworm/main amd64 r-cran-rsqlite amd64 2.2.20-1 [1123 kB] Get:257 http://deb.debian.org/debian bookworm/main amd64 r-cran-filelock amd64 1.0.2-2 [24.6 kB] Get:258 http://deb.debian.org/debian bookworm/main amd64 r-cran-curl amd64 5.0.0+dfsg-1 [172 kB] Get:259 http://deb.debian.org/debian bookworm/main amd64 r-cran-jsonlite amd64 1.8.4+dfsg-1 [442 kB] Get:260 http://deb.debian.org/debian bookworm/main amd64 r-cran-mime amd64 0.12-1+b1 [36.0 kB] Get:261 http://deb.debian.org/debian bookworm/main amd64 r-cran-openssl amd64 2.0.5+dfsg-1 [391 kB] Get:262 http://deb.debian.org/debian bookworm/main amd64 r-cran-httr all 1.4.5+dfsg-1 [465 kB] Get:263 http://deb.debian.org/debian bookworm/main amd64 r-bioc-biocfilecache all 2.6.1+dfsg-1 [296 kB] Get:264 http://deb.debian.org/debian bookworm/main amd64 r-cran-biocmanager all 1.30.20+dfsg-1 [126 kB] Get:265 http://deb.debian.org/debian bookworm/main amd64 r-bioc-biocversion all 3.16.0-1 [10.6 kB] Get:266 http://deb.debian.org/debian bookworm/main amd64 r-cran-later amd64 1.3.0+dfsg-1+b1 [117 kB] Get:267 http://deb.debian.org/debian bookworm/main amd64 r-cran-promises amd64 1.2.0.1+dfsg-1 [274 kB] Get:268 http://deb.debian.org/debian bookworm/main amd64 r-cran-httpuv amd64 1.6.9+dfsg-1 [478 kB] Get:269 http://deb.debian.org/debian bookworm/main amd64 r-cran-digest amd64 0.6.31-1 [184 kB] Get:270 http://deb.debian.org/debian bookworm/main amd64 r-cran-ellipsis amd64 0.3.2-2 [35.1 kB] Get:271 http://deb.debian.org/debian bookworm/main amd64 r-cran-htmltools amd64 0.5.4-1 [364 kB] Get:272 http://deb.debian.org/debian bookworm/main amd64 r-cran-fontawesome all 0.5.0-1 [1304 kB] Get:273 http://deb.debian.org/debian bookworm/main amd64 r-cran-sourcetools amd64 0.1.7-1-1 [45.9 kB] Get:274 http://deb.debian.org/debian bookworm/main amd64 r-cran-crayon all 1.5.2-1 [165 kB] Get:275 http://deb.debian.org/debian bookworm/main amd64 r-cran-commonmark amd64 1.8.1-1 [117 kB] Get:276 http://deb.debian.org/debian bookworm/main amd64 r-cran-fs amd64 1.6.1+dfsg-1 [226 kB] Get:277 http://deb.debian.org/debian bookworm/main amd64 r-cran-sass amd64 0.4.5+dfsg-1 [942 kB] Get:278 http://deb.debian.org/debian bookworm/main amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.1 kB] Get:279 http://deb.debian.org/debian bookworm/main amd64 r-cran-bslib all 0.4.2+dfsg-1 [3773 kB] Get:280 http://deb.debian.org/debian bookworm/main amd64 r-cran-shiny all 1.7.4+dfsg-2+deb12u1 [2751 kB] Get:281 http://deb.debian.org/debian bookworm/main amd64 r-cran-yaml amd64 2.3.7-1 [104 kB] Get:282 http://deb.debian.org/debian bookworm/main amd64 r-cran-evaluate all 0.20-1 [85.9 kB] Get:283 http://deb.debian.org/debian bookworm/main amd64 r-cran-xfun amd64 0.37+dfsg-1 [394 kB] Get:284 http://deb.debian.org/debian bookworm/main amd64 r-cran-highr all 0.10+dfsg-1 [38.1 kB] Get:285 http://deb.debian.org/debian bookworm/main amd64 r-cran-knitr all 1.42+dfsg-1 [901 kB] Get:286 http://deb.debian.org/debian bookworm/main amd64 r-cran-stringi amd64 1.7.12-1 [858 kB] Get:287 http://deb.debian.org/debian bookworm/main amd64 r-cran-stringr all 1.5.0-1 [295 kB] Get:288 http://deb.debian.org/debian bookworm/main amd64 r-cran-tinytex all 0.44-1 [138 kB] Get:289 http://deb.debian.org/debian bookworm/main amd64 r-cran-rmarkdown all 2.20+dfsg-1 [2265 kB] Get:290 http://deb.debian.org/debian bookworm/main amd64 r-cran-htmlwidgets all 1.6.1+dfsg-1 [120 kB] Get:291 http://deb.debian.org/debian bookworm/main amd64 r-cran-crosstalk all 1.2.0+dfsg-1 [171 kB] Get:292 http://deb.debian.org/debian bookworm/main amd64 r-cran-dt all 0.27+dfsg-1 [236 kB] Get:293 http://deb.debian.org/debian bookworm/main amd64 r-bioc-interactivedisplaybase all 1.36.0+dfsg-1 [30.0 kB] Get:294 http://deb.debian.org/debian bookworm/main amd64 r-bioc-annotationhub all 3.6.0+dfsg-1 [435 kB] Get:295 http://deb.debian.org/debian bookworm/main amd64 r-bioc-experimenthub all 2.6.0+ds-1 [79.3 kB] Get:296 http://deb.debian.org/debian bookworm/main amd64 r-bioc-biostrings amd64 2.66.0-1 [13.8 MB] Get:297 http://deb.debian.org/debian bookworm/main amd64 r-bioc-biocio all 1.8.0+dfsg-1 [201 kB] Get:298 http://deb.debian.org/debian bookworm/main amd64 r-cran-xml amd64 3.99-0.13-1 [1717 kB] Get:299 http://deb.debian.org/debian bookworm/main amd64 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get:300 http://deb.debian.org/debian bookworm/main amd64 r-cran-codetools all 0.2-19-1 [90.9 kB] Get:301 http://deb.debian.org/debian bookworm/main amd64 r-cran-bh all 1.74.0-2 [5524 B] Get:302 http://deb.debian.org/debian bookworm/main amd64 r-cran-cpp11 all 0.4.3-1 [223 kB] Get:303 http://deb.debian.org/debian bookworm/main amd64 r-bioc-biocparallel amd64 1.32.5-1 [1337 kB] Get:304 http://deb.debian.org/debian bookworm/main amd64 r-bioc-rhtslib amd64 2.0.0+dfsg-1 [1287 kB] Get:305 http://deb.debian.org/debian bookworm/main amd64 r-bioc-rsamtools amd64 2.14.0-1 [3755 kB] Get:306 http://deb.debian.org/debian bookworm/main amd64 r-bioc-genomicalignments amd64 1.34.0-1 [2112 kB] Get:307 http://deb.debian.org/debian bookworm/main amd64 r-cran-rjson amd64 0.2.21-1 [139 kB] Get:308 http://deb.debian.org/debian bookworm/main amd64 r-cran-restfulr amd64 0.0.15-1 [382 kB] Get:309 http://deb.debian.org/debian bookworm/main amd64 r-bioc-rtracklayer amd64 1.58.0-1 [5104 kB] Get:310 http://deb.debian.org/debian bookworm/main amd64 r-cran-xml2 amd64 1.3.3-1+b1 [280 kB] Get:311 http://deb.debian.org/debian bookworm/main amd64 r-bioc-biomart all 2.54.0+dfsg-1 [442 kB] Get:312 http://deb.debian.org/debian bookworm/main amd64 r-bioc-genomicfeatures all 1.50.4+dfsg-1 [1676 kB] Get:313 http://deb.debian.org/debian bookworm/main amd64 r-bioc-annotationfilter all 1.22.0+dfsg-1 [234 kB] Get:314 http://deb.debian.org/debian bookworm/main amd64 r-bioc-protgenerics all 1.30.0-1 [215 kB] Get:315 http://deb.debian.org/debian bookworm/main amd64 r-bioc-ensembldb all 2.22.0+dfsg-1 [1484 kB] Get:316 http://deb.debian.org/debian bookworm/main amd64 r-bioc-scrnaseq all 2.12.0+ds-1 [286 kB] Get:317 http://deb.debian.org/debian bookworm/main amd64 r-bioc-annotationdbi all 1.60.0-1 [4696 kB] Get:318 http://deb.debian.org/debian bookworm/main amd64 r-bioc-biocgenerics all 0.44.0-2 [600 kB] Get:319 http://deb.debian.org/debian bookworm/main amd64 r-cran-png amd64 0.1-8-1 [41.1 kB] Get:320 http://deb.debian.org/debian bookworm/main amd64 r-bioc-keggrest all 1.38.0+dfsg-1 [179 kB] Get:321 http://deb.debian.org/debian bookworm/main amd64 r-cran-bit amd64 4.0.5-1 [1070 kB] Get:322 http://deb.debian.org/debian bookworm/main amd64 r-cran-formatr all 1.14-1 [152 kB] Get:323 http://deb.debian.org/debian bookworm/main amd64 r-cran-hms all 1.1.2-1 [104 kB] Get:324 http://deb.debian.org/debian bookworm/main amd64 r-cran-sys amd64 3.4.1-1 [42.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 271 MB in 3s (101 MB/s) (Reading database ... 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Unpacking libc-dev-bin (2.36-9+deb12u4) over (2.31-13+deb11u8) ... Selecting previously unselected package rpcsvc-proto. Preparing to unpack .../rpcsvc-proto_1.4.3-1_amd64.deb ... Unpacking rpcsvc-proto (1.4.3-1) ... Preparing to unpack .../libaudit-common_1%3a3.0.9-1_all.deb ... Unpacking libaudit-common (1:3.0.9-1) over (1:3.0-2) ... Setting up libaudit-common (1:3.0.9-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37713 files and directories currently installed.) Preparing to unpack .../libc6_2.36-9+deb12u4_amd64.deb ... Unpacking libc6:amd64 (2.36-9+deb12u4) over (2.31-13+deb11u8) ... Setting up libc6:amd64 (2.36-9+deb12u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37698 files and directories currently installed.) Preparing to unpack .../libc-bin_2.36-9+deb12u4_amd64.deb ... Unpacking libc-bin (2.36-9+deb12u4) over (2.31-13+deb11u8) ... Setting up libc-bin (2.36-9+deb12u4) ... (Reading database ... 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Preparing to unpack .../util-linux-extra_2.38.1-5+b1_amd64.deb ... Unpacking util-linux-extra (2.38.1-5+b1) ... Setting up util-linux-extra (2.38.1-5+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37780 files and directories currently installed.) Preparing to unpack .../liblzma5_5.4.1-0.2_amd64.deb ... Unpacking liblzma5:amd64 (5.4.1-0.2) over (5.2.5-2.1~deb11u1) ... Setting up liblzma5:amd64 (5.4.1-0.2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37801 files and directories currently installed.) Preparing to unpack .../libsystemd0_252.22-1~deb12u1_amd64.deb ... Unpacking libsystemd0:amd64 (252.22-1~deb12u1) over (247.3-7+deb11u4) ... Setting up libsystemd0:amd64 (252.22-1~deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37802 files and directories currently installed.) Preparing to unpack .../libudev1_252.22-1~deb12u1_amd64.deb ... Unpacking libudev1:amd64 (252.22-1~deb12u1) over (247.3-7+deb11u4) ... Setting up libudev1:amd64 (252.22-1~deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37803 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.1-1_amd64.deb ... Unpacking libxxhash0:amd64 (0.8.1-1) over (0.8.0-2) ... Setting up libxxhash0:amd64 (0.8.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37803 files and directories currently installed.) Preparing to unpack .../zlib1g-dev_1%3a1.2.13.dfsg-1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.13.dfsg-1) over (1:1.2.11.dfsg-2+deb11u2) ... Preparing to unpack .../zlib1g_1%3a1.2.13.dfsg-1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.13.dfsg-1) over (1:1.2.11.dfsg-2+deb11u2) ... Setting up zlib1g:amd64 (1:1.2.13.dfsg-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37806 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.6.1_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.6.1) over (2.2.4) ... Setting up libapt-pkg6.0:amd64 (2.6.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37806 files and directories currently installed.) Preparing to unpack .../libnettle8_3.8.1-2_amd64.deb ... Unpacking libnettle8:amd64 (3.8.1-2) over (3.7.3-1) ... Setting up libnettle8:amd64 (3.8.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37806 files and directories currently installed.) Preparing to unpack .../libhogweed6_3.8.1-2_amd64.deb ... Unpacking libhogweed6:amd64 (3.8.1-2) over (3.7.3-1) ... Setting up libhogweed6:amd64 (3.8.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37806 files and directories currently installed.) Preparing to unpack .../libunistring2_1.0-2_amd64.deb ... Unpacking libunistring2:amd64 (1.0-2) over (0.9.10-4) ... Setting up libunistring2:amd64 (1.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37806 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.3-1+b1_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.3-1+b1) over (2.3.0-5) ... Setting up libidn2-0:amd64 (2.3.3-1+b1) ... Selecting previously unselected package libffi8:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37808 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.4-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.4-1) ... Setting up libffi8:amd64 (3.4.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37813 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.24.1-2_amd64.deb ... Unpacking libp11-kit0:amd64 (0.24.1-2) over (0.23.22-1) ... Setting up libp11-kit0:amd64 (0.24.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37813 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.19.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.19.0-2) over (4.16.0-2+deb11u1) ... Setting up libtasn1-6:amd64 (4.19.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37813 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.9-2+deb12u2_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.9-2+deb12u2) over (3.7.1-5+deb11u4) ... Setting up libgnutls30:amd64 (3.7.9-2+deb12u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37815 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.4-1_all.deb ... Unpacking libsemanage-common (3.4-1) over (3.1-1) ... Setting up libsemanage-common (3.4-1) ... Installing new version of config file /etc/selinux/semanage.conf ... Selecting previously unselected package libsepol2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37815 files and directories currently installed.) Preparing to unpack .../libsepol2_3.4-2.1_amd64.deb ... Unpacking libsepol2:amd64 (3.4-2.1) ... Setting up libsepol2:amd64 (3.4-2.1) ... Selecting previously unselected package libsemanage2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37819 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.4-1+b5_amd64.deb ... Unpacking libsemanage2:amd64 (3.4-1+b5) ... Setting up libsemanage2:amd64 (3.4-1+b5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37824 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.13+dfsg1-1+b1_amd64.deb ... Unpacking passwd (1:4.13+dfsg1-1+b1) over (1:4.8.1-1) ... Setting up passwd (1:4.13+dfsg1-1+b1) ... Installing new version of config file /etc/default/useradd ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37859 files and directories currently installed.) Removing libsemanage1:amd64 (3.1-1+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37854 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.2-6+deb12u1_amd64.deb ... Unpacking libpam-modules-bin (1.5.2-6+deb12u1) over (1.4.0-9+deb11u1) ... Replacing files in old package libpam-modules:amd64 (1.4.0-9+deb11u1) ... Setting up libpam-modules-bin (1.5.2-6+deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37861 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.2-6+deb12u1_amd64.deb ... Unpacking libpam-modules:amd64 (1.5.2-6+deb12u1) over (1.4.0-9+deb11u1) ... Setting up libpam-modules:amd64 (1.5.2-6+deb12u1) ... Installing new version of config file /etc/security/limits.conf ... Installing new version of config file /etc/security/sepermit.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37862 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.134_all.deb ... moving unchanged adduser.conf to adduser.conf.update-old. New dpkg-conffile will come from the package. Unpacking adduser (3.134) over (3.118+deb11u1) ... Setting up adduser (3.134) ... Installing new version of config file /etc/deluser.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37830 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.40-1.1_amd64.deb ... Unpacking gpgv (2.2.40-1.1) over (2.2.27-2+deb11u2) ... Setting up gpgv (2.2.40-1.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37830 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2023.3+deb12u1_all.deb ... Unpacking debian-archive-keyring (2023.3+deb12u1) over (2021.1.1+deb11u1) ... Setting up debian-archive-keyring (2023.3+deb12u1) ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-automatic.gpg ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37830 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.4-1+b3_amd64.deb ... Unpacking libseccomp2:amd64 (2.5.4-1+b3) over (2.5.1-1+deb11u1) ... Setting up libseccomp2:amd64 (2.5.4-1+b3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37831 files and directories currently installed.) Preparing to unpack .../archives/apt_2.6.1_amd64.deb ... Unpacking apt (2.6.1) over (2.2.4) ... Setting up apt (2.6.1) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt-compat ... Removing obsolete conffile /etc/kernel/postinst.d/apt-auto-removal ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37828 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.270_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.270) over (0.260) ... Setting up libdebconfclient0:amd64 (0.270) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37828 files and directories currently installed.) Preparing to unpack .../base-passwd_3.6.1_amd64.deb ... Unpacking base-passwd (3.6.1) over (3.5.51) ... Setting up base-passwd (3.6.1) ... Selecting previously unselected package perl-modules-5.36. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37828 files and directories currently installed.) Preparing to unpack .../perl-modules-5.36_5.36.0-7+deb12u1_all.deb ... Unpacking perl-modules-5.36 (5.36.0-7+deb12u1) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../libgdbm6_1.23-3_amd64.deb ... Unpacking libgdbm6:amd64 (1.23-3) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../libgdbm-compat4_1.23-3_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.23-3) ... Preparing to unpack .../libdb5.3_5.3.28+dfsg2-1_amd64.deb ... Unpacking libdb5.3:amd64 (5.3.28+dfsg2-1) over (5.3.28+dfsg1-0.8) ... Setting up libdb5.3:amd64 (5.3.28+dfsg2-1) ... Selecting previously unselected package libperl5.36:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 39250 files and directories currently installed.) Preparing to unpack .../libperl5.36_5.36.0-7+deb12u1_amd64.deb ... Unpacking libperl5.36:amd64 (5.36.0-7+deb12u1) ... Selecting previously unselected package perl. Preparing to unpack .../perl_5.36.0-7+deb12u1_amd64.deb ... Unpacking perl (5.36.0-7+deb12u1) ... Selecting previously unselected package libnumber-compare-perl. Preparing to unpack .../libnumber-compare-perl_0.03-3_all.deb ... Unpacking libnumber-compare-perl (0.03-3) ... Setting up libnumber-compare-perl (0.03-3) ... Selecting previously unselected package libtext-glob-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 39839 files and directories currently installed.) Preparing to unpack .../libtext-glob-perl_0.11-3_all.deb ... Unpacking libtext-glob-perl (0.11-3) ... Setting up libtext-glob-perl (0.11-3) ... Selecting previously unselected package libfile-find-rule-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 39846 files and directories currently installed.) Preparing to unpack .../libfile-find-rule-perl_0.34-3_all.deb ... Unpacking libfile-find-rule-perl (0.34-3) ... Setting up perl-modules-5.36 (5.36.0-7+deb12u1) ... Setting up libgdbm6:amd64 (1.23-3) ... Setting up libgdbm-compat4:amd64 (1.23-3) ... Setting up libperl5.36:amd64 (5.36.0-7+deb12u1) ... Setting up perl (5.36.0-7+deb12u1) ... Setting up libfile-find-rule-perl (0.34-3) ... Selecting previously unselected package usrmerge. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 39861 files and directories currently installed.) Preparing to unpack .../usrmerge_37~deb12u1_all.deb ... Unpacking usrmerge (37~deb12u1) ... Setting up usrmerge (37~deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 39868 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.65.2_all.deb ... Unpacking init-system-helpers (1.65.2) over (1.60) ... Setting up init-system-helpers (1.65.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 39868 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.4-4_all.deb ... Unpacking ncurses-base (6.4-4) over (6.2+20201114-2+deb11u2) ... Setting up ncurses-base (6.4-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 39870 files and directories currently installed.) Preparing to unpack .../logsave_1.47.0-2_amd64.deb ... Unpacking logsave (1.47.0-2) over (1.46.2-2) ... Preparing to unpack .../libext2fs2_1.47.0-2_amd64.deb ... Unpacking libext2fs2:amd64 (1.47.0-2) over (1.46.2-2) ... Setting up libext2fs2:amd64 (1.47.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 39870 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.0-2_amd64.deb ... Unpacking e2fsprogs (1.47.0-2) over (1.46.2-2) ... Preparing to unpack .../mount_2.38.1-5+b1_amd64.deb ... Unpacking mount (2.38.1-5+b1) over (2.36.1-8+deb11u1) ... Preparing to unpack .../libpam-runtime_1.5.2-6+deb12u1_all.deb ... Unpacking libpam-runtime (1.5.2-6+deb12u1) over (1.4.0-9+deb11u1) ... Setting up libpam-runtime (1.5.2-6+deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 39871 files and directories currently installed.) Preparing to unpack .../libacl1_2.3.1-3_amd64.deb ... Unpacking libacl1:amd64 (2.3.1-3) over (2.2.53-10) ... Setting up libacl1:amd64 (2.3.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 39872 files and directories currently installed.) Preparing to unpack .../libattr1_1%3a2.5.1-4_amd64.deb ... Unpacking libattr1:amd64 (1:2.5.1-4) over (1:2.4.48-6) ... Setting up libattr1:amd64 (1:2.5.1-4) ... Installing new version of config file /etc/xattr.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 39873 files and directories currently installed.) Preparing to unpack .../libmd0_1.0.4-2_amd64.deb ... Unpacking libmd0:amd64 (1.0.4-2) over (1.0.3-3) ... Setting up libmd0:amd64 (1.0.4-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 39873 files and directories currently installed.) Preparing to unpack .../libpcre3_2%3a8.39-15_amd64.deb ... Unpacking libpcre3:amd64 (2:8.39-15) over (2:8.39-13) ... Setting up libpcre3:amd64 (2:8.39-15) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 39873 files and directories currently installed.) Preparing to unpack .../libuuid1_2.38.1-5+b1_amd64.deb ... Unpacking libuuid1:amd64 (2.38.1-5+b1) over (2.36.1-8+deb11u1) ... Setting up libuuid1:amd64 (2.38.1-5+b1) ... (Reading database ... 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Setting up libxft2:amd64 (2.3.6-1) ... Setting up libstdc++-12-dev:amd64 (12.2.0-14) ... Setting up libtk8.6:amd64 (8.6.13-2) ... Setting up libpango-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libpaper-utils (1.1.29) ... Setting up libcairo2:amd64 (1.16.0-7) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libboost1.74-dev:amd64 (1.74.0+ds1-21) ... Setting up r-base-core (4.2.2.20221110-2) ... Installing new version of config file /etc/R/Makeconf ... Installing new version of config file /etc/R/Renviron.site ... Installing new version of config file /etc/R/repositories ... Replacing config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.2-1) ... Setting up r-cran-sourcetools (0.1.7-1-1) ... Setting up r-cran-lattice (0.20-45-3) ... Setting up r-cran-formatr (1.14-1) ... 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Setting up r-cran-promises (1.2.0.1+dfsg-1) ... Setting up r-cran-purrr (1.0.1-1) ... Setting up r-cran-blob (1.2.3-1) ... Setting up r-cran-htmltools (0.5.4-1) ... Setting up r-bioc-xvector (0.38.0-1) ... Setting up r-cran-sass (0.4.5+dfsg-1) ... Setting up r-cran-dplyr (1.0.10-1) ... Setting up r-cran-dbplyr (2.3.0+dfsg-1) ... Setting up r-cran-rsqlite (2.2.20-1) ... Setting up r-bioc-biocfilecache (2.6.1+dfsg-1) ... Setting up r-bioc-genomicranges (1.50.2+dfsg-1) ... Setting up r-cran-httpuv (1.6.9+dfsg-1) ... Setting up r-bioc-biostrings (2.66.0-1) ... Setting up r-bioc-annotationfilter (1.22.0+dfsg-1) ... Setting up r-cran-fontawesome (0.5.0-1) ... Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... Setting up r-cran-bslib (0.4.2+dfsg-1) ... Setting up r-bioc-rsamtools (2.14.0-1) ... Setting up r-bioc-summarizedexperiment (1.28.0+dfsg-1) ... Setting up r-bioc-keggrest (1.38.0+dfsg-1) ... Setting up r-bioc-annotationdbi (1.60.0-1) ... Setting up r-cran-shiny (1.7.4+dfsg-2+deb12u1) ... Setting up r-cran-rmarkdown (2.20+dfsg-1) ... Setting up r-bioc-biomart (2.54.0+dfsg-1) ... Setting up r-bioc-genomicalignments (1.34.0-1) ... Setting up r-cran-crosstalk (1.2.0+dfsg-1) ... Setting up r-bioc-rtracklayer (1.58.0-1) ... Setting up r-bioc-singlecellexperiment (1.20.0+ds-1) ... Setting up r-bioc-genomicfeatures (1.50.4+dfsg-1) ... Setting up r-cran-htmlwidgets (1.6.1+dfsg-1) ... Setting up r-bioc-ensembldb (2.22.0+dfsg-1) ... Setting up r-cran-dt (0.27+dfsg-1) ... Setting up r-bioc-interactivedisplaybase (1.36.0+dfsg-1) ... Setting up r-bioc-annotationhub (3.6.0+dfsg-1) ... Setting up r-bioc-experimenthub (2.6.0+ds-1) ... Setting up r-bioc-scrnaseq (2.12.0+ds-1) ... Processing triggers for debianutils (5.7-0.5~deb12u1) ... Processing triggers for libc-bin (2.36-9+deb12u4) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m48.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', '-yf', 'dist-upgrade'] 1m48.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m50.1s DUMP: 0942a352c5bc637c4fdbc12bf31cd5ba - 1m50.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m50.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-scrnaseq'] 1m50.4s DUMP: Package: r-bioc-scrnaseq Version: 2.12.0+ds-1 Installed-Size: 720 Maintainer: Debian R Packages Maintainers Architecture: all Depends: r-base-core (>= 4.2.2.20221110-1), r-api-4.0, r-api-bioc-3.16, r-bioc-singlecellexperiment, r-bioc-biocgenerics, r-bioc-s4vectors, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-experimenthub (>= 2.3.4), r-bioc-annotationhub (>= 3.3.6), r-bioc-annotationdbi, r-bioc-ensembldb, r-bioc-genomicfeatures Suggests: r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown, r-bioc-biocfilecache, r-cran-testthat, r-cran-rappdirs Description-en: Collection of Public Single-Cell RNA-Seq Datasets Gene-level counts for a collection of public scRNA-seq datasets, provided as SingleCellExperiment objects with cell- and gene-level metadata. Description-md5: a469441afa6957bf554513e79e91b2d0 Homepage: https://bioconductor.org/packages/data/experiment/scRNAseq/ Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-scrnaseq/r-bioc-scrnaseq_2.12.0+ds-1_all.deb Size: 285656 MD5sum: bb5dcf31eb817937f9d6c45cdfdf22ad SHA256: 64ea980700a20f35d14e573d0b2276e92931ce4b5b474383c562239ef6e2478a 1m50.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-scrnaseq'] 1m50.4s INFO: apt-cache knows about the following packages: r-bioc-scrnaseq 1m50.4s INFO: Running scripts pre_install 1m50.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_database-server'] 1m50.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_database-server'] 1m50.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_exceptions'] 1m50.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_exceptions'] 1m50.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_extras'] 1m50.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_extras'] 1m50.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_foreign_architecture'] 1m50.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_foreign_architecture'] 1m50.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m50.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m50.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-cache', 'policy'] 1m50.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.5,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-cache', 'policy'] 1m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-cache', 'policy', 'r-bioc-scrnaseq'] 1m50.5s DUMP: r-bioc-scrnaseq: Installed: 2.12.0+ds-1 Candidate: 2.12.0+ds-1 Version table: *** 2.12.0+ds-1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 100 /var/lib/dpkg/status 1m50.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-cache', 'policy', 'r-bioc-scrnaseq'] 1m50.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', '-y', 'install', 'r-bioc-scrnaseq'] 1m51.0s DUMP: Reading package lists... Building dependency tree... Reading state information... r-bioc-scrnaseq is already the newest version (2.12.0+ds-1). The following packages were automatically installed and are no longer required: gcc-11-base libasan6 libgcc-10-dev libicu67 libldap-2.4-2 libstdc++-10-dev libtiff5 libtsan0 libwebp6 Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m51.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', '-y', 'install', 'r-bioc-scrnaseq'] 1m51.0s INFO: Running scripts post_install 1m51.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_install_exceptions'] 1m51.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_install_exceptions'] 1m51.0s INFO: Running scripts post_distupgrade 1m51.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m51.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m51.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_distupgrade_exceptions'] 1m51.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_distupgrade_exceptions'] 1m51.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_distupgrade_zz_backports'] 1m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_distupgrade_zz_backports'] 1m51.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9'] 1m53.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9'] 1m53.5s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpym7b3fk9 to sid 1m53.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 1m53.5s INFO: Running scripts pre_distupgrade 1m53.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m53.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m53.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_distupgrade_exceptions'] 1m53.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_distupgrade_exceptions'] 1m53.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m53.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m53.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m53.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m53.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m53.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m53.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', 'update'] 1m58.1s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9964 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7224 kB] Fetched 17.4 MB in 3s (5092 kB/s) Reading package lists... 1m58.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', 'update'] 1m58.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', '-yf', 'dist-upgrade'] 2m52.6s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: gcc-11-base gcc-12-base libasan6 libgcc-10-dev libgcc-12-dev libicu67 libldap-2.4-2 liblua5.3-0 libnsl-dev libperl5.36 libstdc++-10-dev libstdc++-12-dev libtiff5 libtirpc-dev libtsan0 libwebp6 perl-modules-5.36 r-cran-assertthat Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0 libboost1.74-dev libcurl4 libdb5.3 libext2fs2 libgdbm-compat4 libgdbm6 libglib2.0-0 libgnutls30 libhogweed6 libnettle8 libpng16-16 libpsl5 libreadline8 libssh2-1 libssl3 libtirpc3 libxt6 The following NEW packages will be installed: fonts-dejavu-mono gcc-13-base gcc-14-base libapt-pkg6.0t64 libboost1.83-dev libcurl4t64 libdb5.3t64 libext2fs2t64 libgcc-13-dev libgdbm-compat4t64 libgdbm6t64 libglib2.0-0t64 libgnutls30t64 libhogweed6t64 libhwasan0 liblua5.4-0 libnettle8t64 libperl5.38t64 libpng16-16t64 libpsl5t64 libreadline8t64 libsharpyuv0 libssh2-1t64 libssl3t64 libstdc++-13-dev libtirpc3t64 libunistring5 libxt6t64 perl-modules-5.38 r-bioc-s4arrays r-bioc-sparsearray r-cran-abind r-cran-tidyr The following packages will be upgraded: adduser apt base-files base-passwd bash bsdutils ca-certificates coreutils dash debconf debian-archive-keyring debianutils diffutils dpkg e2fsprogs findutils fontconfig fontconfig-config fonts-dejavu-core gcc-10-base gcc-11-base gcc-12-base gcc-9-base gpgv grep hostname init-system-helpers libacl1 libasan6 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libblas3 libblkid1 libboost-dev libbrotli1 libbsd0 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcairo2 libcap-ng0 libcap2 libcom-err2 libcrypt-dev libcrypt1 libdatrie1 libdebconfclient0 libdeflate0 libexpat1 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgcc-10-dev libgcc-12-dev libgcc-s1 libgcrypt20 libgfortran5 libgmp10 libgomp1 libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libicu72 libidn2-0 libitm1 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.5-0 liblerc4 liblsan0 liblua5.3-0 liblz4-1 liblzma5 libmd0 libmount1 libnghttp2-14 libnsl-dev libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpcre2-8-0 libpcre3 libpixman-1-0 libquadmath0 librtmp1 libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libss2 libstdc++-10-dev libstdc++-12-dev libstdc++6 libsystemd0 libtasn1-6 libtcl8.6 libthai-data libthai0 libtiff6 libtinfo6 libtirpc-common libtirpc-dev libtk8.6 libtsan0 libtsan2 libubsan1 libudev1 libuuid1 libuv1 libwebp7 libx11-6 libx11-data libxft2 libxml2 libxxhash0 libzstd1 linux-libc-dev littler login logsave mawk mount ncurses-base ncurses-bin openssl pandoc pandoc-data passwd perl perl-base r-base-core r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocversion r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray r-bioc-ensembldb r-bioc-experimenthub r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-scrnaseq r-bioc-singlecellexperiment r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-bh r-cran-biocmanager r-cran-blob r-cran-bslib r-cran-cachem r-cran-cli r-cran-commonmark r-cran-cpp11 r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-dt r-cran-evaluate r-cran-fansi r-cran-filelock r-cran-fontawesome r-cran-fs r-cran-glue r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-matrix r-cran-matrixstats r-cran-openssl r-cran-pillar r-cran-pkgkitten r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-sass r-cran-shiny r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-yaml readline-common sed sensible-utils sysvinit-utils tar tzdata usrmerge util-linux util-linux-extra zlib1g zlib1g-dev 259 upgraded, 33 newly installed, 18 to remove and 0 not upgraded. Need to get 279 MB of archives. After this operation, 162 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 base-files amd64 13 [70.6 kB] Get:2 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.17 [89.0 kB] Get:3 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2.21-2 [1492 kB] Get:4 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.39.3-10 [97.3 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libnsl-dev amd64 1.3.0-3 [66.9 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.36-4 [119 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.37-15.1 [1905 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.37-15.1 [47.1 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1.1 [10.8 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libtirpc-dev amd64 1.3.4+ds-1.1 [189 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.1-2 [421 kB] Get:12 http://deb.debian.org/debian sid/main amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [786 kB] Get:13 http://deb.debian.org/debian sid/main amd64 r-cran-curl amd64 5.2.0+dfsg-1 [176 kB] Get:14 http://deb.debian.org/debian sid/main amd64 r-bioc-biobase amd64 2.62.0-1 [2119 kB] Get:15 http://deb.debian.org/debian sid/main amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2062 kB] Get:16 http://deb.debian.org/debian sid/main amd64 r-bioc-iranges amd64 2.36.0-1 [2258 kB] Get:17 http://deb.debian.org/debian sid/main amd64 r-cran-dbi all 1.2.2-1 [824 kB] Get:18 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14-20240303-1 [42.8 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14-20240303-1 [72.2 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14-20240303-1 [713 kB] Get:21 http://deb.debian.org/debian sid/main amd64 r-cran-rlang amd64 1.1.3-1 [1669 kB] Get:22 http://deb.debian.org/debian sid/main amd64 r-cran-cli amd64 3.6.2-1 [1325 kB] Get:23 http://deb.debian.org/debian sid/main amd64 r-cran-glue amd64 1.7.0-1 [157 kB] Get:24 http://deb.debian.org/debian sid/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get:25 http://deb.debian.org/debian sid/main amd64 r-cran-vctrs amd64 0.6.5-1 [1375 kB] Get:26 http://deb.debian.org/debian sid/main amd64 r-cran-blob all 1.2.4-1 [49.6 kB] Get:27 http://deb.debian.org/debian sid/main amd64 r-cran-cpp11 all 0.4.7-1 [219 kB] Get:28 http://deb.debian.org/debian sid/main amd64 r-cran-rsqlite amd64 2.3.4-1 [1159 kB] Get:29 http://deb.debian.org/debian sid/main amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [443 kB] Get:30 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.1.5-1.1 [1241 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.6.0-3.2 [430 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.1.5-1.1 [2058 kB] Get:33 http://deb.debian.org/debian sid/main amd64 r-cran-sys amd64 3.4.2-1 [43.7 kB] Get:34 http://deb.debian.org/debian sid/main amd64 r-cran-askpass amd64 1.2.0-1 [24.0 kB] Get:35 http://deb.debian.org/debian sid/main amd64 r-cran-openssl amd64 2.1.1+dfsg-2+b1 [397 kB] Get:36 http://deb.debian.org/debian sid/main amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libbz2-1.0 amd64 1.0.8-5+b2 [38.2 kB] Get:39 http://deb.debian.org/debian sid/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] Get:40 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.3.dfsg-3.1 [87.6 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b2 [438 kB] Get:42 http://deb.debian.org/debian sid/main amd64 perl-modules-5.38 all 5.38.2-3.2 [2899 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-5+b1 [697 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.23-5.1 [72.7 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.23-5.1 [48.5 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libperl5.38t64 amd64 5.38.2-3.2 [4266 kB] Get:47 http://deb.debian.org/debian sid/main amd64 perl amd64 5.38.2-3.2 [236 kB] Get:48 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.38.2-3.2 [1643 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-4+b2 [19.6 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.5+dfsg2-2 [295 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.66-5 [27.4 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.47-3 [77.8 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.10.3-2 [708 kB] Get:54 http://deb.debian.org/debian sid/main amd64 liblz4-1 amd64 1.9.4-1+b2 [61.6 kB] Get:55 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.6.0-0.2 [250 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 255.4-1+b1 [364 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:3.1.2-2.1 [11.4 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.8.4-2 [16.9 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:3.1.2-2.1 [48.5 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.36-4 [89.8 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.5.3-6 [67.7 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.42-4+b1 [262 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.5-2 [74.8 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.5.3-6 [54.2 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.5.3-6 [260 kB] Get:66 http://deb.debian.org/debian sid/main amd64 debconf all 1.5.86 [119 kB] Get:67 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:68 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:69 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.7-1 [802 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.0-2 [530 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.43-3 [278 kB] Get:77 http://deb.debian.org/debian sid/main amd64 r-cran-png amd64 0.1-8-1+b1 [41.5 kB] Get:78 http://deb.debian.org/debian sid/main amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9344 B] Get:79 http://deb.debian.org/debian sid/main amd64 r-bioc-xvector amd64 0.42.0-1 [622 kB] Get:80 http://deb.debian.org/debian sid/main amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] Get:81 http://deb.debian.org/debian sid/main amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3848 kB] Get:82 http://deb.debian.org/debian sid/main amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.7 MB] Get:83 http://deb.debian.org/debian sid/main amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] Get:84 http://deb.debian.org/debian sid/main amd64 r-bioc-annotationdbi all 1.64.1-1 [4705 kB] Get:85 http://deb.debian.org/debian sid/main amd64 r-cran-abind all 1.4-5-2 [64.6 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get:87 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14-20240303-1 [836 kB] Get:88 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get:89 http://deb.debian.org/debian sid/main amd64 r-cran-lattice amd64 0.22-5-1 [1394 kB] Get:90 http://deb.debian.org/debian sid/main amd64 r-cran-matrix amd64 1.6-5-1 [3789 kB] Get:91 http://deb.debian.org/debian sid/main amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [504 kB] Get:92 http://deb.debian.org/debian sid/main amd64 r-cran-matrixstats amd64 1.2.0-1 [484 kB] Get:93 http://deb.debian.org/debian sid/main amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] Get:94 http://deb.debian.org/debian sid/main amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1196 kB] Get:95 http://deb.debian.org/debian sid/main amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1794 kB] Get:96 http://deb.debian.org/debian sid/main amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1827 kB] Get:97 http://deb.debian.org/debian sid/main amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1139 kB] Get:98 http://deb.debian.org/debian sid/main amd64 r-bioc-singlecellexperiment all 1.24.0+ds-1 [832 kB] Get:99 http://deb.debian.org/debian sid/main amd64 r-cran-fansi amd64 1.0.5-1 [621 kB] Get:100 http://deb.debian.org/debian sid/main amd64 r-cran-utf8 amd64 1.2.4-1 [133 kB] Get:101 http://deb.debian.org/debian sid/main amd64 r-cran-pillar all 1.9.0+dfsg-1 [463 kB] Get:102 http://deb.debian.org/debian sid/main amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [420 kB] Get:103 http://deb.debian.org/debian sid/main amd64 r-cran-dplyr amd64 1.1.4-1 [1524 kB] Get:104 http://deb.debian.org/debian sid/main amd64 r-cran-purrr amd64 1.0.2-1 [507 kB] Get:105 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:106 http://deb.debian.org/debian sid/main amd64 r-cran-stringi amd64 1.8.3-1 [861 kB] Get:107 http://deb.debian.org/debian sid/main amd64 r-cran-stringr all 1.5.1-1 [296 kB] Get:108 http://deb.debian.org/debian sid/main amd64 r-cran-tidyr amd64 1.3.1-1 [1163 kB] Get:109 http://deb.debian.org/debian sid/main amd64 r-cran-withr all 3.0.0+dfsg-1 [240 kB] Get:110 http://deb.debian.org/debian sid/main amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1188 kB] Get:111 http://deb.debian.org/debian sid/main amd64 r-cran-filelock amd64 1.0.3-1 [27.3 kB] Get:112 http://deb.debian.org/debian sid/main amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [301 kB] Get:113 http://deb.debian.org/debian sid/main amd64 r-base-core amd64 4.3.3-3 [26.8 MB] Get:114 http://deb.debian.org/debian sid/main amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [126 kB] Get:115 http://deb.debian.org/debian sid/main amd64 r-bioc-biocversion all 3.18.1-1 [10.7 kB] Get:116 http://deb.debian.org/debian sid/main amd64 r-cran-yaml amd64 2.3.8-1 [106 kB] Get:117 http://deb.debian.org/debian sid/main amd64 r-cran-littler amd64 0.3.19-1 [99.8 kB] Get:118 http://deb.debian.org/debian sid/main amd64 littler all 0.3.19-1 [15.4 kB] Get:119 http://deb.debian.org/debian sid/main amd64 r-cran-pkgkitten all 0.2.3-1 [26.7 kB] Get:120 http://deb.debian.org/debian sid/main amd64 r-cran-rcpp amd64 1.0.12-1 [2071 kB] Get:121 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.37-15.1 [2752 kB] Get:122 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.37-15.1 [602 kB] Get:123 http://deb.debian.org/debian sid/main amd64 r-cran-later amd64 1.3.2+dfsg-1 [118 kB] Get:124 http://deb.debian.org/debian sid/main amd64 r-cran-promises amd64 1.2.1+dfsg-1 [281 kB] Get:125 http://deb.debian.org/debian sid/main amd64 libuv1 amd64 1.48.0-1 [147 kB] Get:126 http://deb.debian.org/debian sid/main amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [492 kB] Get:127 http://deb.debian.org/debian sid/main amd64 r-cran-digest amd64 0.6.35-1 [203 kB] Get:128 http://deb.debian.org/debian sid/main amd64 r-cran-htmltools amd64 0.5.7-1 [374 kB] Get:129 http://deb.debian.org/debian sid/main amd64 r-cran-fontawesome all 0.5.2-1 [1286 kB] Get:130 http://deb.debian.org/debian sid/main amd64 r-cran-commonmark amd64 1.9.1-1 [119 kB] Get:131 http://deb.debian.org/debian sid/main amd64 r-cran-cachem amd64 1.0.8-1 [72.0 kB] Get:132 http://deb.debian.org/debian sid/main amd64 r-cran-fs amd64 1.6.3+dfsg-1 [227 kB] Get:133 http://deb.debian.org/debian sid/main amd64 r-cran-sass amd64 0.4.8+dfsg-1 [959 kB] Get:134 http://deb.debian.org/debian sid/main amd64 r-cran-bslib all 0.6.1+dfsg-1 [5006 kB] Get:135 http://deb.debian.org/debian sid/main amd64 r-cran-shiny all 1.8.0+dfsg-1 [2764 kB] Get:136 http://deb.debian.org/debian sid/main amd64 r-cran-xfun amd64 0.41+dfsg-1 [416 kB] Get:137 http://deb.debian.org/debian sid/main amd64 r-cran-evaluate all 0.23-1 [90.6 kB] Get:138 http://deb.debian.org/debian sid/main amd64 r-cran-knitr all 1.45+dfsg-1 [922 kB] Get:139 http://deb.debian.org/debian sid/main amd64 r-cran-tinytex all 0.49-1 [142 kB] Get:140 http://deb.debian.org/debian sid/main amd64 pandoc amd64 3.1.3+ds-2 [24.3 MB] Get:141 http://deb.debian.org/debian sid/main amd64 pandoc-data all 3.1.3-1 [445 kB] Get:142 http://deb.debian.org/debian sid/main amd64 liblua5.4-0 amd64 5.4.6-3+b1 [147 kB] Get:143 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get:144 http://deb.debian.org/debian sid/main amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1454 kB] Get:145 http://deb.debian.org/debian sid/main amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] Get:146 http://deb.debian.org/debian sid/main amd64 r-cran-crosstalk all 1.2.1+dfsg-1 [175 kB] Get:147 http://deb.debian.org/debian sid/main amd64 r-cran-dt all 0.31+dfsg-1 [239 kB] Get:148 http://deb.debian.org/debian sid/main amd64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.1 kB] Get:149 http://deb.debian.org/debian sid/main amd64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] Get:150 http://deb.debian.org/debian sid/main amd64 r-bioc-experimenthub all 2.10.0+ds-1 [79.6 kB] Get:151 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:152 http://deb.debian.org/debian sid/main amd64 r-cran-xml amd64 3.99-0.16.1-1 [1751 kB] Get:153 http://deb.debian.org/debian sid/main amd64 r-cran-hms all 1.1.3-1 [104 kB] Get:154 http://deb.debian.org/debian sid/main amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] Get:155 http://deb.debian.org/debian sid/main amd64 r-cran-progress all 1.2.3-1 [93.0 kB] Get:156 http://deb.debian.org/debian sid/main amd64 r-cran-xml2 amd64 1.3.6-1 [320 kB] Get:157 http://deb.debian.org/debian sid/main amd64 r-bioc-biomart all 2.58.2+dfsg-1 [450 kB] Get:158 http://deb.debian.org/debian sid/main amd64 r-bioc-biocio all 1.12.0+dfsg-1 [214 kB] Get:159 http://deb.debian.org/debian sid/main amd64 gcc-13-base amd64 13.2.0-18 [43.5 kB] Get:160 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14-20240303-1 [136 kB] Get:161 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 14-20240303-1 [25.9 kB] Get:162 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14-20240303-1 [9208 B] Get:163 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 14-20240303-1 [2723 kB] Get:164 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 14-20240303-1 [1201 kB] Get:165 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 14-20240303-1 [1071 kB] Get:166 http://deb.debian.org/debian sid/main amd64 libstdc++-12-dev amd64 12.3.0-15 [2069 kB] Get:167 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 14-20240303-1 [147 kB] Get:168 http://deb.debian.org/debian sid/main amd64 libgcc-12-dev amd64 12.3.0-15 [2435 kB] Get:169 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 14-20240303-1 [2455 kB] Get:170 http://deb.debian.org/debian sid/main amd64 gcc-12-base amd64 12.3.0-15 [41.8 kB] Get:171 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 14-20240303-1 [1485 kB] Get:172 http://deb.debian.org/debian sid/main amd64 libgcc-13-dev amd64 13.2.0-18 [2544 kB] Get:173 http://deb.debian.org/debian sid/main amd64 libstdc++-13-dev amd64 13.2.0-18 [2211 kB] Get:174 http://deb.debian.org/debian sid/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get:175 http://deb.debian.org/debian sid/main amd64 libboost1.83-dev amd64 1.83.0-2.1 [10.6 MB] Get:176 http://deb.debian.org/debian sid/main amd64 r-cran-bh all 1.84.0-1 [5912 B] Get:177 http://deb.debian.org/debian sid/main amd64 r-bioc-biocparallel amd64 1.36.0-1 [1337 kB] Get:178 http://deb.debian.org/debian sid/main amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2144 kB] Get:179 http://deb.debian.org/debian sid/main amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5094 kB] Get:180 http://deb.debian.org/debian sid/main amd64 r-bioc-genomicfeatures all 1.54.3+dfsg-1 [1665 kB] Get:181 http://deb.debian.org/debian sid/main amd64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [238 kB] Get:182 http://deb.debian.org/debian sid/main amd64 r-bioc-protgenerics all 1.34.0-1 [224 kB] Get:183 http://deb.debian.org/debian sid/main amd64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1478 kB] Get:184 http://deb.debian.org/debian sid/main amd64 r-bioc-scrnaseq all 2.16.0+ds-1 [287 kB] Get:185 http://deb.debian.org/debian sid/main amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-3 [1285 kB] Get:186 http://deb.debian.org/debian sid/main amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3580 kB] Get:187 http://deb.debian.org/debian sid/main amd64 r-bioc-biocgenerics all 0.48.1-2 [597 kB] Get:188 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.7-2 [128 kB] Get:189 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get:190 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b1 [215 kB] Get:191 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-6 [135 kB] Get:192 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-6 [333 kB] Get:193 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-6 [79.7 kB] Get:194 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-6 [33.0 kB] Get:195 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.0-2.4 [20.2 kB] Get:196 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:197 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0t64 amd64 2.7.13+b1 [984 kB] Get:198 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 255.4-1+b1 [126 kB] Get:199 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.2-2+b1 [26.6 kB] Get:200 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.271+b2 [10.2 kB] Get:201 http://deb.debian.org/debian sid/main amd64 base-passwd amd64 3.6.3 [50.8 kB] Get:202 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.5-1 [9908 B] Get:203 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.5-2 [277 kB] Get:204 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.5-1+b2 [90.3 kB] Get:205 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.13+dfsg1-4 [973 kB] Get:206 http://deb.debian.org/debian sid/main amd64 adduser all 3.137 [140 kB] Get:207 http://deb.debian.org/debian sid/main amd64 gpgv amd64 2.2.40-2 [648 kB] Get:208 http://deb.debian.org/debian sid/main amd64 debian-archive-keyring all 2023.4 [161 kB] Get:209 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.5.5-1 [47.0 kB] Get:210 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2+b1 [559 kB] Get:211 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-4+b2 [57.1 kB] Get:212 http://deb.debian.org/debian sid/main amd64 libldap-2.5-0 amd64 2.5.16+dfsg-2 [185 kB] Get:213 http://deb.debian.org/debian sid/main amd64 libhogweed6t64 amd64 3.9.1-2.2 [328 kB] Get:214 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b3 [58.5 kB] Get:215 http://deb.debian.org/debian sid/main amd64 libnettle8t64 amd64 3.9.1-2.2 [296 kB] Get:216 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.3-4 [418 kB] Get:217 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.3-1.1 [1425 kB] Get:218 http://deb.debian.org/debian sid/main amd64 apt amd64 2.7.13+b1 [1368 kB] Get:219 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.19.0-3+b2 [48.9 kB] Get:220 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.59.0-1+b1 [74.1 kB] Get:221 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get:222 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get:223 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.52.1+ds-1 [48.3 kB] Get:224 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.52.1+ds-1 [216 kB] Get:225 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.52.1+ds-1 [35.1 kB] Get:226 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.15.0-1.1 [463 kB] Get:227 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get:228 http://deb.debian.org/debian sid/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:229 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB] Get:230 http://deb.debian.org/debian sid/main amd64 libthai0 amd64 0.1.29-2 [49.1 kB] Get:231 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.39.3-10 [159 kB] Get:232 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.39.3-10 [191 kB] Get:233 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.78.4-4 [1453 kB] Get:234 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-3.1 [69.2 kB] Get:235 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.4+20240113-1 [342 kB] Get:236 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-3.1 [167 kB] Get:237 http://deb.debian.org/debian sid/main amd64 libxt6t64 amd64 1:1.2.1-1.2 [187 kB] Get:238 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-2+b2 [167 kB] Get:239 http://deb.debian.org/debian sid/main amd64 tzdata all 2024a-1 [255 kB] Get:240 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1 [1034 kB] Get:241 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.3.2-0.4+b1 [108 kB] Get:242 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.3.2-0.4+b1 [308 kB] Get:243 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.19-1 [41.4 kB] Get:244 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get:245 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get:246 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get:247 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b1 [54.2 kB] Get:248 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.14-1 [784 kB] Get:249 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:250 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.1 [82.5 kB] Get:251 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-3 [40.0 kB] Get:252 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 6.7.9-2 [2255 kB] Get:253 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.4-3+b2 [2952 kB] Get:254 http://deb.debian.org/debian sid/main amd64 tar amd64 1.35+dfsg-3 [813 kB] Get:255 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.22.6 [1510 kB] Get:256 http://deb.debian.org/debian sid/main amd64 dash amd64 0.5.12-6 [92.1 kB] Get:257 http://deb.debian.org/debian sid/main amd64 diffutils amd64 1:3.10-1 [375 kB] Get:258 http://deb.debian.org/debian sid/main amd64 findutils amd64 4.9.0-5 [636 kB] Get:259 http://deb.debian.org/debian sid/main amd64 grep amd64 3.11-4 [431 kB] Get:260 http://deb.debian.org/debian sid/main amd64 hostname amd64 3.23+nmu2 [10.6 kB] Get:261 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.13+dfsg1-4 [616 kB] Get:262 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.4+20240113-1 [431 kB] Get:263 http://deb.debian.org/debian sid/main amd64 sed amd64 4.9-2 [329 kB] Get:264 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.39.3-10 [117 kB] Get:265 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.39.3-10 [30.1 kB] Get:266 http://deb.debian.org/debian sid/main amd64 util-linux-extra amd64 2.39.3-10 [155 kB] Get:267 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.39.3-10 [1231 kB] Get:268 http://deb.debian.org/debian sid/main amd64 usrmerge all 39 [13.1 kB] Get:269 http://deb.debian.org/debian sid/main amd64 init-system-helpers all 1.66 [39.0 kB] Get:270 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.4+20240113-1 [268 kB] Get:271 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.08-7 [32.2 kB] Get:272 http://deb.debian.org/debian sid/main amd64 logsave amd64 1.47.0-2.4 [20.1 kB] Get:273 http://deb.debian.org/debian sid/main amd64 libext2fs2t64 amd64 1.47.0-2.4 [206 kB] Get:274 http://deb.debian.org/debian sid/main amd64 e2fsprogs amd64 1.47.0-2.4 [571 kB] Get:275 http://deb.debian.org/debian sid/main amd64 mount amd64 2.39.3-10 [143 kB] Get:276 http://deb.debian.org/debian sid/main amd64 libpam-runtime all 1.5.3-6 [140 kB] Get:277 http://deb.debian.org/debian sid/main amd64 libacl1 amd64 2.3.2-1 [32.4 kB] Get:278 http://deb.debian.org/debian sid/main amd64 libattr1 amd64 1:2.5.2-1 [22.5 kB] Get:279 http://deb.debian.org/debian sid/main amd64 libmd0 amd64 1.1.0-2 [35.8 kB] Get:280 http://deb.debian.org/debian sid/main amd64 mawk amd64 1.3.4.20240123-1 [136 kB] Get:281 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get:282 http://deb.debian.org/debian sid/main amd64 libtsan0 amd64 11.4.0-7 [2019 kB] Get:283 http://deb.debian.org/debian sid/main amd64 libasan6 amd64 11.4.0-7 [2049 kB] Get:284 http://deb.debian.org/debian sid/main amd64 gcc-11-base amd64 11.4.0-7 [40.3 kB] Get:285 http://deb.debian.org/debian sid/main amd64 libstdc++-10-dev amd64 10.5.0-3 [1755 kB] Get:286 http://deb.debian.org/debian sid/main amd64 libgcc-10-dev amd64 10.5.0-3 [2323 kB] Get:287 http://deb.debian.org/debian sid/main amd64 gcc-10-base amd64 10.5.0-3 [36.6 kB] Get:288 http://deb.debian.org/debian sid/main amd64 gcc-9-base amd64 9.5.0-5 [28.8 kB] Get:289 http://deb.debian.org/debian sid/main amd64 libbsd0 amd64 0.12.1-1 [129 kB] Get:290 http://deb.debian.org/debian sid/main amd64 liblua5.3-0 amd64 5.3.6-2+b2 [129 kB] Get:291 http://deb.debian.org/debian sid/main amd64 libpcre3 amd64 2:8.39-15+b1 [342 kB] Get:292 http://deb.debian.org/debian sid/main amd64 libss2 amd64 1.47.0-2.4 [25.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 279 MB in 2s (158 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48266 files and directories currently installed.) Preparing to unpack .../base-files_13_amd64.deb ... Unpacking base-files (13) over (12.4+deb12u5) ... Setting up base-files (13) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... (Reading database ... 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Preparing to unpack .../3-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) over (0.36.1-1) ... Preparing to unpack .../4-r-bioc-iranges_2.36.0-1_amd64.deb ... Unpacking r-bioc-iranges (2.36.0-1) over (2.32.0-1) ... Preparing to unpack .../5-r-cran-dbi_1.2.2-1_all.deb ... Unpacking r-cran-dbi (1.2.2-1) over (1.1.3-1) ... Selecting previously unselected package gcc-14-base:amd64. Preparing to unpack .../6-gcc-14-base_14-20240303-1_amd64.deb ... Unpacking gcc-14-base:amd64 (14-20240303-1) ... Setting up gcc-14-base:amd64 (14-20240303-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48284 files and directories currently installed.) Preparing to unpack .../0-r-cran-rlang_1.1.3-1_amd64.deb ... Unpacking r-cran-rlang (1.1.3-1) over (1.0.6-1) ... Preparing to unpack .../1-r-cran-cli_3.6.2-1_amd64.deb ... Unpacking r-cran-cli (3.6.2-1) over (3.6.0-1) ... Preparing to unpack .../2-r-cran-glue_1.7.0-1_amd64.deb ... Unpacking r-cran-glue (1.7.0-1) over (1.6.2-1) ... Preparing to unpack .../3-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 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Unpacking openssl (3.1.5-1.1) over (3.0.11-1~deb12u2) ... dpkg: libcurl4:amd64: dependency problems, but removing anyway as you requested: r-cran-rcurl depends on libcurl4 (>= 7.16.2). r-cran-curl depends on libcurl4 (>= 7.74.0). r-bioc-rsamtools depends on libcurl4 (>= 7.18.0). r-bioc-rhtslib depends on libcurl4 (>= 7.18.0). r-base-core depends on libcurl4 (>= 7.28.0). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48295 files and directories currently installed.) Removing libcurl4:amd64 (7.88.1-10+deb12u5) ... Selecting previously unselected package libcurl4t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48289 files and directories currently installed.) Preparing to unpack .../libcurl4t64_8.6.0-3.2_amd64.deb ... Unpacking libcurl4t64:amd64 (8.6.0-3.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48296 files and directories currently installed.) Removing libssh2-1:amd64 (1.10.0-3+b1) ... dpkg: libssl3:amd64: dependency problems, but removing anyway as you requested: r-cran-openssl depends on libssl3 (>= 3.0.0). libkrb5-3:amd64 depends on libssl3 (>= 3.0.0). Removing libssl3:amd64 (3.0.11-1~deb12u2) ... Selecting previously unselected package libssl3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48275 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.1.5-1.1_amd64.deb ... Unpacking libssl3t64:amd64 (3.1.5-1.1) ... Setting up libssl3t64:amd64 (3.1.5-1.1) ... (Reading database ... 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Unpacking perl-modules-5.38 (5.38.2-3.2) ... dpkg: libdb5.3:amd64: dependency problems, but removing anyway as you requested: libsasl2-modules-db:amd64 depends on libdb5.3. libperl5.36:amd64 depends on libdb5.3. libpam-modules:amd64 depends on libdb5.3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 49710 files and directories currently installed.) Removing libdb5.3:amd64 (5.3.28+dfsg2-1) ... Selecting previously unselected package libdb5.3t64:amd64. (Reading database ... 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(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 50247 files and directories currently installed.) Removing libpng16-16:amd64 (1.6.39-2) ... Selecting previously unselected package libpng16-16t64:amd64. (Reading database ... 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Unpacking libldap-2.5-0:amd64 (2.5.16+dfsg-2) over (2.5.13+dfsg-5) ... dpkg: libgnutls30:amd64: dependency problems, but removing anyway as you requested: librtmp1:amd64 depends on libgnutls30 (>= 3.6.14). libldap-2.4-2:amd64 depends on libgnutls30 (>= 3.7.0). apt depends on libgnutls30 (>= 3.7.5). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53169 files and directories currently installed.) Removing libgnutls30:amd64 (3.7.9-2+deb12u2) ... dpkg: libhogweed6:amd64: dependency problems, but removing anyway as you requested: librtmp1:amd64 depends on libhogweed6. Removing libhogweed6:amd64 (3.8.1-2) ... Selecting previously unselected package libhogweed6t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53134 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.9.1-2.2_amd64.deb ... Unpacking libhogweed6t64:amd64 (3.9.1-2.2) ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53133 files and directories currently installed.) Preparing to unpack .../libnettle8t64_3.9.1-2.2_amd64.deb ... Unpacking libnettle8t64:amd64 (3.9.1-2.2) ... Preparing to unpack .../libp11-kit0_0.25.3-4_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.3-4) over (0.24.1-2) ... Setting up libp11-kit0:amd64 (0.25.3-4) ... Selecting previously unselected package libgnutls30t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53142 files and directories currently installed.) Preparing to unpack .../libgnutls30t64_3.8.3-1.1_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.3-1.1) ... Setting up libnettle8t64:amd64 (3.9.1-2.2) ... Setting up libhogweed6t64:amd64 (3.9.1-2.2) ... Setting up libgnutls30t64:amd64 (3.8.3-1.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53171 files and directories currently installed.) Preparing to unpack .../apt_2.7.13+b1_amd64.deb ... Unpacking apt (2.7.13+b1) over (2.6.1) ... Setting up apt (2.7.13+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53168 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.19.0-3+b2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.19.0-3+b2) over (4.19.0-2) ... Setting up libtasn1-6:amd64 (4.19.0-3+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53169 files and directories currently installed.) Preparing to unpack .../00-libnghttp2-14_1.59.0-1+b1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.59.0-1+b1) over (1.52.0-1+deb12u1) ... Preparing to unpack .../01-libgraphite2-3_1.3.14-2_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.14-2) over (1.3.14-1) ... Preparing to unpack .../02-libharfbuzz0b_8.3.0-2+b1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (8.3.0-2+b1) over (6.0.0+dfsg-3) ... 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Unpacking libthai0:amd64 (0.1.29-2) over (0.1.29-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53175 files and directories currently installed.) Removing libglib2.0-0:amd64 (2.74.6-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53151 files and directories currently installed.) Preparing to unpack .../libblkid1_2.39.3-10_amd64.deb ... Unpacking libblkid1:amd64 (2.39.3-10) over (2.38.1-5+b1) ... Setting up libblkid1:amd64 (2.39.3-10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53150 files and directories currently installed.) Preparing to unpack .../libmount1_2.39.3-10_amd64.deb ... Unpacking libmount1:amd64 (2.39.3-10) over (2.38.1-5+b1) ... Setting up libmount1:amd64 (2.39.3-10) ... Selecting previously unselected package libglib2.0-0t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53149 files and directories currently installed.) Preparing to unpack .../libglib2.0-0t64_2.78.4-4_amd64.deb ... libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:amd64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... removed '/var/lib/dpkg/info/libglib2.0-0:amd64.postrm' Unpacking libglib2.0-0t64:amd64 (2.78.4-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53174 files and directories currently installed.) Removing libreadline8:amd64 (8.2-1.3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53161 files and directories currently installed.) Preparing to unpack .../readline-common_8.2-3.1_all.deb ... Unpacking readline-common (8.2-3.1) over (8.2-1.3) ... Preparing to unpack .../libtinfo6_6.4+20240113-1_amd64.deb ... Unpacking libtinfo6:amd64 (6.4+20240113-1) over (6.4-4) ... Setting up libtinfo6:amd64 (6.4+20240113-1) ... Selecting previously unselected package libreadline8t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53161 files and directories currently installed.) Preparing to unpack .../libreadline8t64_8.2-3.1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-3.1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53176 files and directories currently installed.) Preparing to unpack .../00-libxt6t64_1%3a1.2.1-1.2_amd64.deb ... Unpacking libxt6t64:amd64 (1:1.2.1-1.2) ... Preparing to unpack .../01-libjpeg62-turbo_1%3a2.1.5-2+b2_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.5-2+b2) over (1:2.1.5-2) ... Preparing to unpack .../02-tzdata_2024a-1_all.deb ... Unpacking tzdata (2024a-1) over (2024a-0+deb12u1) ... Preparing to unpack .../03-libtcl8.6_8.6.14+dfsg-1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.14+dfsg-1) over (8.6.13+dfsg-2) ... Selecting previously unselected package libsharpyuv0:amd64. Preparing to unpack .../04-libsharpyuv0_1.3.2-0.4+b1_amd64.deb ... Unpacking libsharpyuv0:amd64 (1.3.2-0.4+b1) ... Preparing to unpack .../05-libwebp7_1.3.2-0.4+b1_amd64.deb ... Unpacking libwebp7:amd64 (1.3.2-0.4+b1) over (1.2.4-0.2+deb12u1) ... Preparing to unpack .../06-libdeflate0_1.19-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.19-1) over (1.14-1) ... Preparing to unpack .../07-libjbig0_2.1-6.1+b1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1+b1) over (2.1-6.1) ... Preparing to unpack .../08-liblerc4_4.0.0+ds-4+b1_amd64.deb ... Unpacking liblerc4:amd64 (4.0.0+ds-4+b1) over (4.0.0+ds-2) ... Preparing to unpack .../09-libtiff6_4.5.1+git230720-4_amd64.deb ... Unpacking libtiff6:amd64 (4.5.1+git230720-4) over (4.5.0-6+deb12u1) ... Preparing to unpack .../10-libxft2_2.3.6-1+b1_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1+b1) over (2.3.6-1) ... Preparing to unpack .../11-libtk8.6_8.6.14-1_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.14-1) over (8.6.13-2) ... Preparing to unpack .../12-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) over (20230311) ... dpkg: libtirpc3:amd64: dependency problems, but removing anyway as you requested: libnsl2:amd64 depends on libtirpc3 (>= 1.0.2). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52418 files and directories currently installed.) Removing libtirpc3:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 52411 files and directories currently installed.) Preparing to unpack .../libtirpc3t64_1.3.4+ds-1.1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.1) ... Preparing to unpack .../libnsl2_1.3.0-3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3) over (1.3.0-2) ... Preparing to unpack .../linux-libc-dev_6.7.9-2_all.deb ... Unpacking linux-libc-dev (6.7.9-2) over (6.1.76-1) ... Preparing to unpack .../coreutils_9.4-3+b2_amd64.deb ... Unpacking coreutils (9.4-3+b2) over (9.1-1) ... Setting up coreutils (9.4-3+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54085 files and directories currently installed.) Preparing to unpack .../tar_1.35+dfsg-3_amd64.deb ... Unpacking tar (1.35+dfsg-3) over (1.34+dfsg-1.2+deb12u1) ... Setting up tar (1.35+dfsg-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54086 files and directories currently installed.) Preparing to unpack .../archives/dpkg_1.22.6_amd64.deb ... Unpacking dpkg (1.22.6) over (1.21.22) ... Setting up dpkg (1.22.6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54074 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-6_amd64.deb ... Unpacking dash (0.5.12-6) over (0.5.12-2) ... Setting up dash (0.5.12-6) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54072 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.10-1_amd64.deb ... Unpacking diffutils (1:3.10-1) over (1:3.8-4) ... Setting up diffutils (1:3.10-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54074 files and directories currently installed.) Preparing to unpack .../findutils_4.9.0-5_amd64.deb ... Unpacking findutils (4.9.0-5) over (4.9.0-4) ... Setting up findutils (4.9.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54074 files and directories currently installed.) Preparing to unpack .../archives/grep_3.11-4_amd64.deb ... Unpacking grep (3.11-4) over (3.8-5) ... Setting up grep (3.11-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54074 files and directories currently installed.) Preparing to unpack .../hostname_3.23+nmu2_amd64.deb ... Unpacking hostname (3.23+nmu2) over (3.23+nmu1) ... Setting up hostname (3.23+nmu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54074 files and directories currently installed.) Preparing to unpack .../login_1%3a4.13+dfsg1-4_amd64.deb ... Unpacking login (1:4.13+dfsg1-4) over (1:4.13+dfsg1-1+b1) ... Setting up login (1:4.13+dfsg1-4) ... Installing new version of config file /etc/login.defs ... Installing new version of config file /etc/pam.d/login ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54073 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.4+20240113-1_amd64.deb ... Unpacking ncurses-bin (6.4+20240113-1) over (6.4-4) ... Setting up ncurses-bin (6.4+20240113-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54073 files and directories currently installed.) Preparing to unpack .../archives/sed_4.9-2_amd64.deb ... Unpacking sed (4.9-2) over (4.9-1) ... Setting up sed (4.9-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54073 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.39.3-10_amd64.deb ... Unpacking libsmartcols1:amd64 (2.39.3-10) over (2.38.1-5+b1) ... Setting up libsmartcols1:amd64 (2.39.3-10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54072 files and directories currently installed.) Preparing to unpack .../libuuid1_2.39.3-10_amd64.deb ... Unpacking libuuid1:amd64 (2.39.3-10) over (2.38.1-5+b1) ... Setting up libuuid1:amd64 (2.39.3-10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54071 files and directories currently installed.) Preparing to unpack .../util-linux-extra_2.39.3-10_amd64.deb ... Unpacking util-linux-extra (2.39.3-10) over (2.38.1-5+b1) ... dpkg: warning: unable to delete old directory '/usr/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/usr/lib/udev': Directory not empty Setting up util-linux-extra (2.39.3-10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54076 files and directories currently installed.) Preparing to unpack .../util-linux_2.39.3-10_amd64.deb ... Unpacking util-linux (2.39.3-10) over (2.38.1-5+b1) ... Setting up util-linux (2.39.3-10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54078 files and directories currently installed.) Preparing to unpack .../archives/usrmerge_39_all.deb ... Unpacking usrmerge (39) over (37~deb12u1) ... Setting up perl-modules-5.38 (5.38.2-3.2) ... Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-5+b1) ... Setting up libgdbm6t64:amd64 (1.23-5.1) ... Setting up libgdbm-compat4t64:amd64 (1.23-5.1) ... Setting up libperl5.38t64:amd64 (5.38.2-3.2) ... Setting up perl (5.38.2-3.2) ... Setting up usrmerge (39) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54078 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.66_all.deb ... Unpacking init-system-helpers (1.66) over (1.65.2) ... Setting up init-system-helpers (1.66) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54078 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.4+20240113-1_all.deb ... Unpacking ncurses-base (6.4+20240113-1) over (6.4-4) ... Setting up ncurses-base (6.4+20240113-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54076 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.08-7_amd64.deb ... Unpacking sysvinit-utils (3.08-7) over (3.06-4) ... dpkg: warning: unable to delete old directory '/lib/lsb/init-functions.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/lsb': Directory not empty dpkg: warning: unable to delete old directory '/lib/init': Directory not empty Setting up sysvinit-utils (3.08-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54076 files and directories currently installed.) Preparing to unpack .../logsave_1.47.0-2.4_amd64.deb ... Unpacking logsave (1.47.0-2.4) over (1.47.0-2) ... dpkg: libext2fs2:amd64: dependency problems, but removing anyway as you requested: e2fsprogs depends on libext2fs2 (= 1.47.0-2). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54076 files and directories currently installed.) Removing libext2fs2:amd64 (1.47.0-2) ... Selecting previously unselected package libext2fs2t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54069 files and directories currently installed.) Preparing to unpack .../libext2fs2t64_1.47.0-2.4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:amd64 (1.47.0-2.4) ... Setting up libcom-err2:amd64 (1.47.0-2.4) ... Setting up libext2fs2t64:amd64 (1.47.0-2.4) ... (Reading database ... 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Setting up libjbig0:amd64 (2.1-6.1+b1) ... Setting up libasan6:amd64 (11.4.0-7) ... Setting up libkrb5support0:amd64 (1.20.1-6) ... Setting up gcc-12-base:amd64 (12.3.0-15) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-4+b2) ... Setting up tzdata (2024a-1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Mar 14 12:10:11 UTC 2024. Universal Time is now: Thu Mar 14 12:10:11 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up gcc-10-base:amd64 (10.5.0-3) ... Setting up libpcre3:amd64 (2:8.39-15+b1) ... Setting up libglib2.0-0t64:amd64 (2.78.4-4) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-3) ... Setting up libuv1:amd64 (1.48.0-1) ... Setting up gcc-13-base:amd64 (13.2.0-18) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-2+b2) ... Setting up libx11-data (2:1.8.7-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b3) ... Setting up libfribidi0:amd64 (1.0.13-3+b1) ... 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Setting up r-cran-tinytex (0.49-1) ... Setting up r-cran-knitr (1.45+dfsg-1) ... Setting up r-cran-cachem (1.0.8-1) ... Setting up r-cran-sass (0.4.8+dfsg-1) ... Setting up r-bioc-iranges (2.36.0-1) ... Setting up r-cran-vctrs (0.6.5-1) ... Setting up r-cran-pillar (1.9.0+dfsg-1) ... Setting up r-cran-openssl (2.1.1+dfsg-2+b1) ... Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... Setting up r-cran-stringr (1.5.1-1) ... Setting up r-bioc-biocparallel (1.36.0-1) ... Setting up r-bioc-rhtslib (2.4.1+dfsg-3) ... Setting up r-cran-xml2 (1.3.6-1) ... Setting up r-cran-tibble (3.2.1+dfsg-2) ... Setting up r-cran-fontawesome (0.5.2-1) ... Setting up r-bioc-biocio (1.12.0+dfsg-1) ... Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... Setting up r-cran-bslib (0.6.1+dfsg-1) ... Setting up r-cran-httr (1.4.7+dfsg-1) ... Setting up r-cran-hms (1.1.3-1) ... Setting up r-cran-promises (1.2.1+dfsg-1) ... Setting up r-cran-purrr (1.0.2-1) ... Setting up r-cran-blob (1.2.4-1) ... Setting up r-bioc-xvector (0.42.0-1) ... Setting up r-cran-dplyr (1.1.4-1) ... Setting up r-cran-rsqlite (2.3.4-1) ... Setting up r-cran-progress (1.2.3-1) ... Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... Setting up r-cran-httpuv (1.6.14+dfsg-1) ... Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... Setting up r-cran-shiny (1.8.0+dfsg-1) ... Setting up r-cran-rmarkdown (2.25+dfsg-3) ... Setting up r-cran-tidyr (1.3.1-1) ... Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... Setting up r-bioc-annotationdbi (1.64.1-1) ... Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... Setting up r-bioc-biomart (2.58.2+dfsg-1) ... Setting up r-bioc-genomicalignments (1.38.2-1) ... Setting up r-bioc-rtracklayer (1.62.0-1) ... Setting up r-cran-dt (0.31+dfsg-1) ... Setting up r-bioc-singlecellexperiment (1.24.0+ds-1) ... Setting up r-bioc-genomicfeatures (1.54.3+dfsg-1) ... Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... Setting up r-bioc-experimenthub (2.10.0+ds-1) ... Setting up r-bioc-scrnaseq (2.16.0+ds-1) ... Processing triggers for debianutils (5.17) ... Processing triggers for libc-bin (2.37-15.1) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 2m52.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', '-yf', 'dist-upgrade'] 2m52.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m54.6s DUMP: 01dcb520f085b945a2ae4741c099d1e7 - 2m54.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m54.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-scrnaseq'] 2m54.9s DUMP: Package: r-bioc-scrnaseq Version: 2.16.0+ds-1 Installed-Size: 720 Maintainer: Debian R Packages Maintainers Architecture: all Depends: r-api-4.0, r-api-bioc-3.18, r-bioc-singlecellexperiment, r-bioc-biocgenerics, r-bioc-s4vectors, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-experimenthub (>= 2.3.4), r-bioc-annotationhub (>= 3.3.6), r-bioc-annotationdbi, r-bioc-ensembldb, r-bioc-genomicfeatures Suggests: r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown, r-bioc-biocfilecache, r-cran-testthat, r-cran-rappdirs Description-en: Collection of Public Single-Cell RNA-Seq Datasets Gene-level counts for a collection of public scRNA-seq datasets, provided as SingleCellExperiment objects with cell- and gene-level metadata. Description-md5: a469441afa6957bf554513e79e91b2d0 Homepage: https://bioconductor.org/packages/data/experiment/scRNAseq/ Section: gnu-r Priority: optional Filename: pool/main/r/r-bioc-scrnaseq/r-bioc-scrnaseq_2.16.0+ds-1_all.deb Size: 286656 MD5sum: a06be18301b7cf618fab86441b73d64f SHA256: 112ee93d6331ff8f1d35cd78e5c76aa65384c2ab7fbe4a25a5529766a32f901c 2m54.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-cache', 'show', '--no-all-versions', 'r-bioc-scrnaseq'] 2m54.9s INFO: apt-cache knows about the following packages: r-bioc-scrnaseq 2m54.9s INFO: Running scripts pre_install 2m54.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_database-server'] 2m54.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_database-server'] 2m54.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_exceptions'] 2m54.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_exceptions'] 2m54.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_extras'] 2m54.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_extras'] 2m54.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_foreign_architecture'] 2m54.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_foreign_architecture'] 2m54.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m54.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m54.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-cache', 'policy'] 2m55.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m55.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-cache', 'policy'] 2m55.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-cache', 'policy', 'r-bioc-scrnaseq'] 2m55.0s DUMP: r-bioc-scrnaseq: Installed: 2.16.0+ds-1 Candidate: 2.16.0+ds-1 Version table: *** 2.16.0+ds-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 2m55.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-cache', 'policy', 'r-bioc-scrnaseq'] 2m55.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', '-y', 'install', 'r-bioc-scrnaseq'] 2m55.7s DUMP: Reading package lists... Building dependency tree... Reading state information... r-bioc-scrnaseq is already the newest version (2.16.0+ds-1). The following packages were automatically installed and are no longer required: gcc-11-base gcc-12-base libasan6 libgcc-10-dev libgcc-12-dev libicu67 libldap-2.4-2 liblua5.3-0 libnsl-dev libperl5.36 libstdc++-10-dev libstdc++-12-dev libtiff5 libtirpc-dev libtsan0 libwebp6 perl-modules-5.36 r-cran-assertthat Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', '-y', 'install', 'r-bioc-scrnaseq'] 2m55.7s INFO: Running scripts post_install 2m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_install_exceptions'] 2m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_install_exceptions'] 2m55.7s INFO: Running scripts post_distupgrade 2m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_distupgrade_exceptions'] 2m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_distupgrade_exceptions'] 2m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m55.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_distupgrade_zz_backports'] 2m55.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_distupgrade_zz_backports'] 2m55.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9'] 2m58.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9'] 2m58.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9'] 3m0.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9'] 3m0.9s INFO: Running scripts pre_install 3m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_database-server'] 3m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_database-server'] 3m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_exceptions'] 3m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_exceptions'] 3m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_extras'] 3m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_extras'] 3m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_foreign_architecture'] 3m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_foreign_architecture'] 3m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-cache', 'policy'] 3m0.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 3m0.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-cache', 'policy'] 3m0.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-cache', 'policy', 'r-bioc-scrnaseq'] 3m1.0s DUMP: r-bioc-scrnaseq: Installed: 2.16.0+ds-1 Candidate: 2.16.0+ds-1 Version table: *** 2.16.0+ds-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 3m1.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-cache', 'policy', 'r-bioc-scrnaseq'] 3m1.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', '-y', 'install', 'r-bioc-scrnaseq=2.16.0+ds-1'] 3m1.7s DUMP: Reading package lists... Building dependency tree... Reading state information... r-bioc-scrnaseq is already the newest version (2.16.0+ds-1). The following packages were automatically installed and are no longer required: gcc-11-base gcc-12-base libasan6 libgcc-10-dev libgcc-12-dev libicu67 libldap-2.4-2 liblua5.3-0 libnsl-dev libperl5.36 libstdc++-10-dev libstdc++-12-dev libtiff5 libtirpc-dev libtsan0 libwebp6 perl-modules-5.36 r-cran-assertthat Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', '-y', 'install', 'r-bioc-scrnaseq=2.16.0+ds-1'] 3m1.7s INFO: Running scripts post_install 3m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_install_exceptions'] 3m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_install_exceptions'] 3m1.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9'] 3m4.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9'] 3m4.7s INFO: /bin converted to /usr/bin by /usr merge 3m4.7s INFO: /lib converted to /usr/lib by /usr merge 3m4.7s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 3m4.7s INFO: /lib64 converted to /usr/lib64 by /usr merge 3m4.7s INFO: /sbin converted to /usr/sbin by /usr merge 3m9.4s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', '-ac', '--ignore-obsolete'] 3m14.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', '-ac', '--ignore-obsolete'] 3m14.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 3m14.6s DUMP: 0.15.6 3m14.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 3m14.6s INFO: Running adequate version 0.15.6 now. 3m14.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'r-bioc-scrnaseq'] 3m14.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'r-bioc-scrnaseq'] 3m14.7s INFO: Running scripts pre_remove 3m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 3m14.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 3m14.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 3m14.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 3m14.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m23.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m23.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m23.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m23.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m23.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m23.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_remove_exceptions'] 3m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/pre_remove_exceptions'] 3m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m23.6s DUMP: install ok installed adduser adduser 3.137 install ok installed apt apt 2.7.13+b1 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.39.3-10 install ok installed ca-certificates ca-certificates 20240203 install ok installed coreutils coreutils 9.4-3+b2 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.17 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.6 install ok installed e2fsprogs e2fsprogs 1.47.0-2.4 install ok installed findutils findutils 4.9.0-5 install ok installed fontconfig fontconfig 2.15.0-1.1 install ok installed fontconfig-config fontconfig-config 2.15.0-1.1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-4.1 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-3 install ok installed fonts-mathjax fonts-mathjax 2.7.9+dfsg-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.5.0-3 install ok installed gcc-11-base:amd64 gcc-11-base 11.4.0-7 install ok installed gcc-12-base:amd64 gcc-12-base 12.3.0-15 install ok installed gcc-13-base:amd64 gcc-13-base 13.2.0-18 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240303-1 install ok installed gcc-9-base:amd64 gcc-9-base 9.5.0-5 install ok installed gpgv gpgv 2.2.40-2 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed javascript-common javascript-common 11+nmu1 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.7.13+b1 install ok installed libasan6:amd64 libasan6 11.4.0-7 install ok installed libasan8:amd64 libasan8 14-20240303-1 install ok installed libatomic1:amd64 libatomic1 14-20240303-1 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libblas3:amd64 libblas3 3.12.0-3 install ok installed libblkid1:amd64 libblkid1 2.39.3-10 install ok installed libboost-dev:amd64 libboost-dev 1.83.0.2+b2 install ok installed libboost1.83-dev:amd64 libboost1.83-dev 1.83.0-2.1 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b3 install ok installed libbsd0:amd64 libbsd0 0.12.1-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b2 install ok installed libc-bin libc-bin 2.37-15.1 install ok installed libc-dev-bin libc-dev-bin 2.37-15.1 install ok installed libc6:amd64 libc6 2.37-15.1 install ok installed libc6-dev:amd64 libc6-dev 2.37-15.1 install ok installed libcairo2:amd64 libcairo2 1.18.0-2 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2.4 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.36-4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libcurl4t64:amd64 libcurl4t64 8.6.0-3.2 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-3 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-5+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b2 install ok installed libdeflate0:amd64 libdeflate0 1.19-1 install ok installed libexpat1:amd64 libexpat1 2.6.2-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.0-2.4 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-1.1 install ok installed libfreetype6:amd64 libfreetype6 2.13.2+dfsg-1+b2 install ok installed libfribidi0:amd64 libfribidi0 1.0.13-3+b1 install ok installed libgcc-10-dev:amd64 libgcc-10-dev 10.5.0-3 install ok installed libgcc-12-dev:amd64 libgcc-12-dev 12.3.0-15 install ok installed libgcc-13-dev:amd64 libgcc-13-dev 13.2.0-18 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240303-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.23-5.1 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.23-5.1 install ok installed libgfortran5:amd64 libgfortran5 14-20240303-1 deinstall ok config-files libglib2.0-0:amd64 libglib2.0-0 2.74.6-2 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.78.4-4 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.3-1.1 install ok installed libgomp1:amd64 libgomp1 14-20240303-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-6 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 8.3.0-2+b1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.9.1-2.2 install ok installed libhwasan0:amd64 libhwasan0 14-20240303-1 install ok installed libice6:amd64 libice6 2:1.0.10-1 install ok installed libicu67:amd64 libicu67 67.1-7 install ok installed libicu72:amd64 libicu72 72.1-4+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libitm1:amd64 libitm1 14-20240303-1 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-2+b2 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-3 install ok installed libjs-bootstrap4 libjs-bootstrap4 4.6.1+dfsg1-4 install ok installed libjs-d3 libjs-d3 3.5.17-4 install ok installed libjs-es5-shim libjs-es5-shim 4.6.7-2 install ok installed libjs-highlight.js libjs-highlight.js 9.18.5+dfsg1-2 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-datatables libjs-jquery-datatables 1.11.5+dfsg-2 install ok installed libjs-jquery-datatables-extensions libjs-jquery-datatables-extensions 0.0+git20150910.28fd64e+dfsg-5 install ok installed libjs-jquery-selectize.js libjs-jquery-selectize.js 0.12.6+dfsg-1.1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libjs-json libjs-json 0~20221030+~1.0.8-1 install ok installed libjs-mathjax libjs-mathjax 2.7.9+dfsg-1 install ok installed libjs-microplugin.js libjs-microplugin.js 0.0.3+dfsg-1.1 install ok installed libjs-modernizr libjs-modernizr 2.6.2+ds1-5 install ok installed libjs-popper.js libjs-popper.js 1.16.1+ds-6 install ok installed libjs-prettify libjs-prettify 2015.12.04+dfsg-1.1 install ok installed libjs-sifter.js libjs-sifter.js 0.6.0+dfsg-3 install ok installed libjs-twitter-bootstrap-datepicker libjs-twitter-bootstrap-datepicker 1.3.1+dfsg1-4.1 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-6 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-6 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-6 install ok installed liblapack3:amd64 liblapack3 3.12.0-3 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.57+dfsg-3+deb11u1 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.16+dfsg-2 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-4+b1 install ok installed liblsan0:amd64 liblsan0 14-20240303-1 install ok installed liblua5.3-0:amd64 liblua5.3-0 5.3.6-2+b2 install ok installed liblua5.4-0:amd64 liblua5.4-0 5.4.6-3+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzma5:amd64 liblzma5 5.6.0-0.2 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.39.3-10 install ok installed libnettle8t64:amd64 libnettle8t64 3.9.1-2.2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.59.0-1+b1 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-3 install ok installed libnsl2:amd64 libnsl2 1.3.0-3 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-6 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-6 install ok installed libpam-runtime libpam-runtime 1.5.3-6 install ok installed libpam0g:amd64 libpam0g 1.5.3-6 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.52.1+ds-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.52.1+ds-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.52.1+ds-1 install ok installed libpaper-utils libpaper-utils 1.1.29 install ok installed libpaper1:amd64 libpaper1 1.1.29 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libpcre3:amd64 libpcre3 2:8.39-15+b1 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-7+deb12u1 install ok installed libperl5.38t64:amd64 libperl5.38t64 5.38.2-3.2 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.42.2-1+b1 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.43-3 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1 install ok installed libquadmath0:amd64 libquadmath0 14-20240303-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-3.1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b3 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-4+b2 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-4+b2 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.3.2-0.4+b1 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-10 install ok installed libss2:amd64 libss2 1.47.0-2.4 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.0-4.1+b1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libssl3t64:amd64 libssl3t64 3.1.5-1.1 install ok installed libstdc++-10-dev:amd64 libstdc++-10-dev 10.5.0-3 install ok installed libstdc++-12-dev:amd64 libstdc++-12-dev 12.3.0-15 install ok installed libstdc++-13-dev:amd64 libstdc++-13-dev 13.2.0-18 install ok installed libstdc++6:amd64 libstdc++6 14-20240303-1 install ok installed libsystemd0:amd64 libsystemd0 255.4-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.14+dfsg-1 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libthai-data libthai-data 0.1.29-2 install ok installed libthai0:amd64 libthai0 0.1.29-2 install ok installed libtiff5:amd64 libtiff5 4.2.0-1+deb11u5 install ok installed libtiff6:amd64 libtiff6 4.5.1+git230720-4 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1.1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.4+ds-1.1 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.4+ds-1.1 install ok installed libtk8.6:amd64 libtk8.6 8.6.14-1 install ok installed libtsan0:amd64 libtsan0 11.4.0-7 install ok installed libtsan2:amd64 libtsan2 14-20240303-1 install ok installed libubsan1:amd64 libubsan1 14-20240303-1 install ok installed libudev1:amd64 libudev1 255.4-1+b1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.3-10 install ok installed libuv1:amd64 libuv1 1.48.0-1 install ok installed libwebp6:amd64 libwebp6 0.6.1-2.1+deb11u2 install ok installed libwebp7:amd64 libwebp7 1.3.2-0.4+b1 install ok installed libx11-6:amd64 libx11-6 2:1.8.7-1 install ok installed libx11-data libx11-data 2:1.8.7-1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.15-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.15-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxft2:amd64 libxft2 2.3.6-1+b1 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3+b2 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.2 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed linux-libc-dev linux-libc-dev 6.7.9-2 install ok installed littler littler 0.3.19-1 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2.4 install ok installed lsb-base lsb-base 11.6 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed mount mount 2.39.3-10 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed node-bootstrap-sass node-bootstrap-sass 3.4.3-2 install ok installed node-html5shiv node-html5shiv 3.7.3+dfsg-5 install ok installed node-normalize.css node-normalize.css 8.0.1-5 install ok installed openssl openssl 3.1.5-1.1 install ok installed pandoc pandoc 3.1.3+ds-2 install ok installed pandoc-data pandoc-data 3.1.3-1 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl perl 5.38.2-3.2 install ok installed perl-base perl-base 5.38.2-3.2 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-7+deb12u1 install ok installed perl-modules-5.38 perl-modules-5.38 5.38.2-3.2 install ok installed r-base-core r-base-core 4.3.3-3 install ok installed r-bioc-annotationdbi r-bioc-annotationdbi 1.64.1-1 install ok installed r-bioc-annotationfilter r-bioc-annotationfilter 1.26.0+dfsg-1 install ok installed r-bioc-annotationhub r-bioc-annotationhub 3.10.0+dfsg-1 install ok installed r-bioc-biobase r-bioc-biobase 2.62.0-1 install ok installed r-bioc-biocfilecache r-bioc-biocfilecache 2.10.1+dfsg-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.48.1-2 install ok installed r-bioc-biocio r-bioc-biocio 1.12.0+dfsg-1 install ok installed r-bioc-biocparallel r-bioc-biocparallel 1.36.0-1 install ok installed r-bioc-biocversion r-bioc-biocversion 3.18.1-1 install ok installed r-bioc-biomart r-bioc-biomart 2.58.2+dfsg-1 install ok installed r-bioc-biostrings r-bioc-biostrings 2.70.2+dfsg-1 install ok installed r-bioc-delayedarray r-bioc-delayedarray 0.28.0+dfsg-1 install ok installed r-bioc-ensembldb r-bioc-ensembldb 2.26.0+dfsg-1 install ok installed r-bioc-experimenthub r-bioc-experimenthub 2.10.0+ds-1 install ok installed r-bioc-genomeinfodb r-bioc-genomeinfodb 1.38.6+dfsg-1 install ok installed r-bioc-genomeinfodbdata r-bioc-genomeinfodbdata 1.2.11-2 install ok installed r-bioc-genomicalignments r-bioc-genomicalignments 1.38.2-1 install ok installed r-bioc-genomicfeatures r-bioc-genomicfeatures 1.54.3+dfsg-1 install ok installed r-bioc-genomicranges r-bioc-genomicranges 1.54.1+dfsg-1 install ok installed r-bioc-interactivedisplaybase r-bioc-interactivedisplaybase 1.40.0+dfsg-1 install ok installed r-bioc-iranges r-bioc-iranges 2.36.0-1 install ok installed r-bioc-keggrest r-bioc-keggrest 1.42.0+dfsg-1 install ok installed r-bioc-matrixgenerics r-bioc-matrixgenerics 1.14.0-1 install ok installed r-bioc-protgenerics r-bioc-protgenerics 1.34.0-1 install ok installed r-bioc-rhtslib r-bioc-rhtslib 2.4.1+dfsg-3 install ok installed r-bioc-rsamtools r-bioc-rsamtools 2.18.0+dfsg-1 install ok installed r-bioc-rtracklayer r-bioc-rtracklayer 1.62.0-1 install ok installed r-bioc-s4arrays r-bioc-s4arrays 1.2.0+dfsg-1 install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.40.2+dfsg-1 install ok installed r-bioc-scrnaseq r-bioc-scrnaseq 2.16.0+ds-1 install ok installed r-bioc-singlecellexperiment r-bioc-singlecellexperiment 1.24.0+ds-1 install ok installed r-bioc-sparsearray r-bioc-sparsearray 1.2.4+dfsg-1 install ok installed r-bioc-summarizedexperiment r-bioc-summarizedexperiment 1.32.0+dfsg-1 install ok installed r-bioc-xvector r-bioc-xvector 0.42.0-1 install ok installed r-bioc-zlibbioc r-bioc-zlibbioc 1.48.0+dfsg-1 install ok installed r-cran-abind r-cran-abind 1.4-5-2 install ok installed r-cran-askpass r-cran-askpass 1.2.0-1 install ok installed r-cran-assertthat r-cran-assertthat 0.2.1-2 install ok installed r-cran-base64enc r-cran-base64enc 0.1-3-3 install ok installed r-cran-bh r-cran-bh 1.84.0-1 install ok installed r-cran-biocmanager r-cran-biocmanager 1.30.22+dfsg-2 install ok installed r-cran-bit r-cran-bit 4.0.5-1 install ok installed r-cran-bit64 r-cran-bit64 4.0.5-1 install ok installed r-cran-bitops r-cran-bitops 1.0-7-1 install ok installed r-cran-blob r-cran-blob 1.2.4-1 install ok installed r-cran-bslib r-cran-bslib 0.6.1+dfsg-1 install ok installed r-cran-cachem r-cran-cachem 1.0.8-1 install ok installed r-cran-cli r-cran-cli 3.6.2-1 install ok installed r-cran-codetools r-cran-codetools 0.2-19-1 install ok installed r-cran-commonmark r-cran-commonmark 1.9.1-1 install ok installed r-cran-cpp11 r-cran-cpp11 0.4.7-1 install ok installed r-cran-crayon r-cran-crayon 1.5.2-1 install ok installed r-cran-crosstalk r-cran-crosstalk 1.2.1+dfsg-1 install ok installed r-cran-curl r-cran-curl 5.2.0+dfsg-1 install ok installed r-cran-dbi r-cran-dbi 1.2.2-1 install ok installed r-cran-dbplyr r-cran-dbplyr 2.4.0+dfsg-1 install ok installed r-cran-digest r-cran-digest 0.6.35-1 install ok installed r-cran-dplyr r-cran-dplyr 1.1.4-1 install ok installed r-cran-dt r-cran-dt 0.31+dfsg-1 install ok installed r-cran-ellipsis r-cran-ellipsis 0.3.2-2 install ok installed r-cran-evaluate r-cran-evaluate 0.23-1 install ok installed r-cran-fansi r-cran-fansi 1.0.5-1 install ok installed r-cran-fastmap r-cran-fastmap 1.1.1-1 install ok installed r-cran-filelock r-cran-filelock 1.0.3-1 install ok installed r-cran-fontawesome r-cran-fontawesome 0.5.2-1 install ok installed r-cran-formatr r-cran-formatr 1.14-1 install ok installed r-cran-fs r-cran-fs 1.6.3+dfsg-1 install ok installed r-cran-futile.logger r-cran-futile.logger 1.4.3-4 install ok installed r-cran-futile.options r-cran-futile.options 1.0.1-3 install ok installed r-cran-generics r-cran-generics 0.1.3-1 install ok installed r-cran-glue r-cran-glue 1.7.0-1 install ok installed r-cran-highr r-cran-highr 0.10+dfsg-1 install ok installed r-cran-hms r-cran-hms 1.1.3-1 install ok installed r-cran-htmltools r-cran-htmltools 0.5.7-1 install ok installed r-cran-htmlwidgets r-cran-htmlwidgets 1.6.4+dfsg-1 install ok installed r-cran-httpuv r-cran-httpuv 1.6.14+dfsg-1 install ok installed r-cran-httr r-cran-httr 1.4.7+dfsg-1 install ok installed r-cran-jquerylib r-cran-jquerylib 0.1.4+dfsg-4 install ok installed r-cran-jsonlite r-cran-jsonlite 1.8.8+dfsg-1 install ok installed r-cran-knitr r-cran-knitr 1.45+dfsg-1 install ok installed r-cran-lambda.r r-cran-lambda.r 1.2.4-2 install ok installed r-cran-later r-cran-later 1.3.2+dfsg-1 install ok installed r-cran-lattice r-cran-lattice 0.22-5-1 install ok installed r-cran-lazyeval r-cran-lazyeval 0.2.2-1+b1 install ok installed r-cran-lifecycle r-cran-lifecycle 1.0.4+dfsg-1 install ok installed r-cran-littler r-cran-littler 0.3.19-1 install ok installed r-cran-magrittr r-cran-magrittr 2.0.3-1 install ok installed r-cran-matrix r-cran-matrix 1.6-5-1 install ok installed r-cran-matrixstats r-cran-matrixstats 1.2.0-1 install ok installed r-cran-memoise r-cran-memoise 2.0.1-1 install ok installed r-cran-mime r-cran-mime 0.12-1+b1 install ok installed r-cran-openssl r-cran-openssl 2.1.1+dfsg-2+b1 install ok installed r-cran-pillar r-cran-pillar 1.9.0+dfsg-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-2 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.2.3-1 install ok installed r-cran-plogr r-cran-plogr 0.2.0-3 install ok installed r-cran-png r-cran-png 0.1-8-1+b1 install ok installed r-cran-prettyunits r-cran-prettyunits 1.2.0-1 install ok installed r-cran-progress r-cran-progress 1.2.3-1 install ok installed r-cran-promises r-cran-promises 1.2.1+dfsg-1 install ok installed r-cran-purrr r-cran-purrr 1.0.2-1 install ok installed r-cran-r6 r-cran-r6 2.5.1-1 install ok installed r-cran-rappdirs r-cran-rappdirs 0.3.3-1 install ok installed r-cran-rcpp r-cran-rcpp 1.0.12-1 install ok installed r-cran-rcurl r-cran-rcurl 1.98-1.14+dfsg-1 install ok installed r-cran-restfulr r-cran-restfulr 0.0.15-1 install ok installed r-cran-rjson r-cran-rjson 0.2.21-1 install ok installed r-cran-rlang r-cran-rlang 1.1.3-1 install ok installed r-cran-rmarkdown r-cran-rmarkdown 2.25+dfsg-3 install ok installed r-cran-rsqlite r-cran-rsqlite 2.3.4-1 install ok installed r-cran-sass r-cran-sass 0.4.8+dfsg-1 install ok installed r-cran-shiny r-cran-shiny 1.8.0+dfsg-1 install ok installed r-cran-snow r-cran-snow 1:0.4.4-2 install ok installed r-cran-sourcetools r-cran-sourcetools 0.1.7-1-1 install ok installed r-cran-stringi r-cran-stringi 1.8.3-1 install ok installed r-cran-stringr r-cran-stringr 1.5.1-1 install ok installed r-cran-sys r-cran-sys 3.4.2-1 install ok installed r-cran-tibble r-cran-tibble 3.2.1+dfsg-2 install ok installed r-cran-tidyr r-cran-tidyr 1.3.1-1 install ok installed r-cran-tidyselect r-cran-tidyselect 1.2.0+dfsg-1 install ok installed r-cran-tinytex r-cran-tinytex 0.49-1 install ok installed r-cran-utf8 r-cran-utf8 1.2.4-1 install ok installed r-cran-vctrs r-cran-vctrs 0.6.5-1 install ok installed r-cran-withr r-cran-withr 3.0.0+dfsg-1 install ok installed r-cran-xfun r-cran-xfun 0.41+dfsg-1 install ok installed r-cran-xml r-cran-xml 3.99-0.16.1-1 install ok installed r-cran-xml2 r-cran-xml2 1.3.6-1 install ok installed r-cran-xtable r-cran-xtable 1:1.8-4-2 install ok installed r-cran-yaml r-cran-yaml 2.3.8-1 install ok installed readline-common readline-common 8.2-3.1 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.22 install ok installed sysvinit-utils sysvinit-utils 3.08-7 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-1 install ok installed ucf ucf 3.0043+nmu1 install ok installed unzip unzip 6.0-28 install ok installed usrmerge usrmerge 39 install ok installed util-linux util-linux 2.39.3-10 install ok installed util-linux-extra util-linux-extra 2.39.3-10 install ok installed x11-common x11-common 1:7.7+23 install ok installed xdg-utils xdg-utils 1.1.3-4.1 install ok installed zip zip 3.0-13 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3.1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg-3.1 3m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', '-y', '--no-install-recommends', '--force-yes', 'install', 'libhogweed6:amd64=3.9.1-2+b1', 'libnettle8:amd64=3.9.1-2+b1', 'libtirpc3:amd64=1.3.4+ds-1', 'ca-certificates-', 'fontconfig-', 'fontconfig-config-', 'fonts-dejavu-core-', 'fonts-dejavu-mono-', 'fonts-font-awesome-', 'fonts-glyphicons-halflings-', 'fonts-mathjax-', 'gcc-11-base:amd64-', 'gcc-13-base:amd64-', 'javascript-common-', 'libasan6:amd64-', 'libasan8:amd64-', 'libatomic1:amd64-', 'libblas3:amd64-', 'libboost-dev:amd64-', 'libboost1.83-dev:amd64-', 'libbrotli1:amd64-', 'libbsd0:amd64-', 'libc-dev-bin-', 'libc6-dev:amd64-', 'libcairo2:amd64-', 'libcrypt-dev:amd64-', 'libcurl4t64:amd64-', 'libdatrie1:amd64-', 'libdeflate0:amd64-', 'libexpat1:amd64-', 'libfontconfig1:amd64-', 'libfreetype6:amd64-', 'libfribidi0:amd64-', 'libgcc-10-dev:amd64-', 'libgcc-12-dev:amd64-', 'libgcc-13-dev:amd64-', 'libgfortran5:amd64-', 'libglib2.0-0:amd64-', 'libglib2.0-0t64:amd64-', 'libgomp1:amd64-', 'libgraphite2-3:amd64-', 'libharfbuzz0b:amd64-', 'libhogweed6t64:amd64-', 'libhwasan0:amd64-', 'libice6:amd64-', 'libicu67:amd64-', 'libicu72:amd64-', 'libitm1:amd64-', 'libjbig0:amd64-', 'libjpeg62-turbo:amd64-', 'libjs-bootstrap-', 'libjs-bootstrap4-', 'libjs-d3-', 'libjs-es5-shim-', 'libjs-highlight.js-', 'libjs-jquery-', 'libjs-jquery-datatables-', 'libjs-jquery-datatables-extensions-', 'libjs-jquery-selectize.js-', 'libjs-jquery-ui-', 'libjs-json-', 'libjs-mathjax-', 'libjs-microplugin.js-', 'libjs-modernizr-', 'libjs-popper.js-', 'libjs-prettify-', 'libjs-sifter.js-', 'libjs-twitter-bootstrap-datepicker-', 'liblapack3:amd64-', 'libldap-2.4-2:amd64-', 'libldap-2.5-0:amd64-', 'liblerc4:amd64-', 'liblsan0:amd64-', 'liblua5.3-0:amd64-', 'liblua5.4-0:amd64-', 'libnettle8t64:amd64-', 'libnghttp2-14:amd64-', 'libnsl-dev:amd64-', 'libpango-1.0-0:amd64-', 'libpangocairo-1.0-0:amd64-', 'libpangoft2-1.0-0:amd64-', 'libpaper-utils-', 'libpaper1:amd64-', 'libpixman-1-0:amd64-', 'libpng16-16t64:amd64-', 'libpsl5t64:amd64-', 'libquadmath0:amd64-', 'libreadline8t64:amd64-', 'librtmp1:amd64-', 'libsasl2-2:amd64-', 'libsasl2-modules-db:amd64-', 'libsharpyuv0:amd64-', 'libsm6:amd64-', 'libssh2-1t64:amd64-', 'libstdc++-10-dev:amd64-', 'libstdc++-12-dev:amd64-', 'libstdc++-13-dev:amd64-', 'libtcl8.6:amd64-', 'libthai-data-', 'libthai0:amd64-', 'libtiff5:amd64-', 'libtiff6:amd64-', 'libtirpc-dev:amd64-', 'libtirpc3t64:amd64-', 'libtk8.6:amd64-', 'libtsan0:amd64-', 'libtsan2:amd64-', 'libubsan1:amd64-', 'libuv1:amd64-', 'libwebp6:amd64-', 'libwebp7:amd64-', 'libx11-6:amd64-', 'libx11-data-', 'libxau6:amd64-', 'libxcb-render0:amd64-', 'libxcb-shm0:amd64-', 'libxcb1:amd64-', 'libxdmcp6:amd64-', 'libxext6:amd64-', 'libxft2:amd64-', 'libxml2:amd64-', 'libxrender1:amd64-', 'libxss1:amd64-', 'libxt6t64:amd64-', 'libyaml-0-2:amd64-', 'linux-libc-dev-', 'littler-', 'node-bootstrap-sass-', 'node-html5shiv-', 'node-normalize.css-', 'openssl-', 'pandoc-', 'pandoc-data-', 'r-base-core-', 'r-bioc-annotationdbi-', 'r-bioc-annotationfilter-', 'r-bioc-annotationhub-', 'r-bioc-biobase-', 'r-bioc-biocfilecache-', 'r-bioc-biocgenerics-', 'r-bioc-biocio-', 'r-bioc-biocparallel-', 'r-bioc-biocversion-', 'r-bioc-biomart-', 'r-bioc-biostrings-', 'r-bioc-delayedarray-', 'r-bioc-ensembldb-', 'r-bioc-experimenthub-', 'r-bioc-genomeinfodb-', 'r-bioc-genomeinfodbdata-', 'r-bioc-genomicalignments-', 'r-bioc-genomicfeatures-', 'r-bioc-genomicranges-', 'r-bioc-interactivedisplaybase-', 'r-bioc-iranges-', 'r-bioc-keggrest-', 'r-bioc-matrixgenerics-', 'r-bioc-protgenerics-', 'r-bioc-rhtslib-', 'r-bioc-rsamtools-', 'r-bioc-rtracklayer-', 'r-bioc-s4arrays-', 'r-bioc-s4vectors-', 'r-bioc-singlecellexperiment-', 'r-bioc-sparsearray-', 'r-bioc-summarizedexperiment-', 'r-bioc-xvector-', 'r-bioc-zlibbioc-', 'r-cran-abind-', 'r-cran-askpass-', 'r-cran-assertthat-', 'r-cran-base64enc-', 'r-cran-bh-', 'r-cran-biocmanager-', 'r-cran-bit-', 'r-cran-bit64-', 'r-cran-bitops-', 'r-cran-blob-', 'r-cran-bslib-', 'r-cran-cachem-', 'r-cran-cli-', 'r-cran-codetools-', 'r-cran-commonmark-', 'r-cran-cpp11-', 'r-cran-crayon-', 'r-cran-crosstalk-', 'r-cran-curl-', 'r-cran-dbi-', 'r-cran-dbplyr-', 'r-cran-digest-', 'r-cran-dplyr-', 'r-cran-dt-', 'r-cran-ellipsis-', 'r-cran-evaluate-', 'r-cran-fansi-', 'r-cran-fastmap-', 'r-cran-filelock-', 'r-cran-fontawesome-', 'r-cran-formatr-', 'r-cran-fs-', 'r-cran-futile.logger-', 'r-cran-futile.options-', 'r-cran-generics-', 'r-cran-glue-', 'r-cran-highr-', 'r-cran-hms-', 'r-cran-htmltools-', 'r-cran-htmlwidgets-', 'r-cran-httpuv-', 'r-cran-httr-', 'r-cran-jquerylib-', 'r-cran-jsonlite-', 'r-cran-knitr-', 'r-cran-lambda.r-', 'r-cran-later-', 'r-cran-lattice-', 'r-cran-lazyeval-', 'r-cran-lifecycle-', 'r-cran-littler-', 'r-cran-magrittr-', 'r-cran-matrix-', 'r-cran-matrixstats-', 'r-cran-memoise-', 'r-cran-mime-', 'r-cran-openssl-', 'r-cran-pillar-', 'r-cran-pkgconfig-', 'r-cran-pkgkitten-', 'r-cran-plogr-', 'r-cran-png-', 'r-cran-prettyunits-', 'r-cran-progress-', 'r-cran-promises-', 'r-cran-purrr-', 'r-cran-r6-', 'r-cran-rappdirs-', 'r-cran-rcpp-', 'r-cran-rcurl-', 'r-cran-restfulr-', 'r-cran-rjson-', 'r-cran-rlang-', 'r-cran-rmarkdown-', 'r-cran-rsqlite-', 'r-cran-sass-', 'r-cran-shiny-', 'r-cran-snow-', 'r-cran-sourcetools-', 'r-cran-stringi-', 'r-cran-stringr-', 'r-cran-sys-', 'r-cran-tibble-', 'r-cran-tidyr-', 'r-cran-tidyselect-', 'r-cran-tinytex-', 'r-cran-utf8-', 'r-cran-vctrs-', 'r-cran-withr-', 'r-cran-xfun-', 'r-cran-xml-', 'r-cran-xml2-', 'r-cran-xtable-', 'r-cran-yaml-', 'readline-common-', 'rpcsvc-proto-', 'sensible-utils-', 'ucf-', 'unzip-', 'x11-common-', 'xdg-utils-', 'zip-', 'zlib1g-dev:amd64-', 'r-bioc-scrnaseq-'] 3m29.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Package 'libglib2.0-0' is not installed, so not removed The following packages were automatically installed and are no longer required: gcc-12-base libperl5.36 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: ca-certificates fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gcc-11-base gcc-13-base javascript-common libasan6 libasan8 libatomic1 libblas3 libboost-dev libboost1.83-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcairo2 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgcc-10-dev libgcc-12-dev libgcc-13-dev libgfortran5 libglib2.0-0t64 libgomp1 libgraphite2-3 libharfbuzz0b libhogweed6t64 libhwasan0 libice6 libicu67 libicu72 libitm1 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack3 libldap-2.4-2 libldap-2.5-0 liblerc4 liblsan0 liblua5.3-0 liblua5.4-0 libnettle8t64 libnghttp2-14 libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16t64 libpsl5t64 libquadmath0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libssh2-1t64 libstdc++-10-dev libstdc++-12-dev libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff5 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan0 libtsan2 libubsan1 libuv1 libwebp6 libwebp7 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6t64 libyaml-0-2 linux-libc-dev littler node-bootstrap-sass node-html5shiv node-normalize.css openssl pandoc pandoc-data r-base-core r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocversion r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray r-bioc-ensembldb r-bioc-experimenthub r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-scrnaseq r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-assertthat r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml readline-common rpcsvc-proto sensible-utils ucf unzip x11-common xdg-utils zip zlib1g-dev The following NEW packages will be installed: libhogweed6 libnettle8 libtirpc3 0 upgraded, 3 newly installed, 268 to remove and 0 not upgraded. Need to get 705 kB of archives. After this operation, 982 MB disk space will be freed. Get:1 http://deb.debian.org/debian sid/main amd64 libhogweed6 amd64 3.9.1-2+b1 [328 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libnettle8 amd64 3.9.1-2+b1 [296 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libtirpc3 amd64 1.3.4+ds-1 [82.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 705 kB in 0s (12.4 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54089 files and directories currently installed.) Removing r-bioc-scrnaseq (2.16.0+ds-1) ... Removing r-bioc-ensembldb (2.26.0+dfsg-1) ... Removing r-bioc-genomicfeatures (1.54.3+dfsg-1) ... Removing r-bioc-rtracklayer (1.62.0-1) ... Removing r-bioc-genomicalignments (1.38.2-1) ... Removing r-bioc-rsamtools (2.18.0+dfsg-1) ... Removing r-bioc-biocparallel (1.36.0-1) ... Removing r-cran-snow (1:0.4.4-2) ... Removing r-bioc-singlecellexperiment (1.24.0+ds-1) ... Removing r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... Removing r-bioc-delayedarray (0.28.0+dfsg-1) ... Removing r-bioc-sparsearray (1.2.4+dfsg-1) ... Removing r-bioc-s4arrays (1.2.0+dfsg-1) ... Removing r-cran-abind (1.4-5-2) ... Removing r-bioc-experimenthub (2.10.0+ds-1) ... Removing r-bioc-annotationhub (3.10.0+dfsg-1) ... Removing r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... Removing r-cran-dt (0.31+dfsg-1) ... Removing r-cran-htmlwidgets (1.6.4+dfsg-1) ... Removing r-cran-rmarkdown (2.25+dfsg-3) ... Removing r-cran-matrix (1.6-5-1) ... Removing r-cran-knitr (1.45+dfsg-1) ... Removing r-cran-crosstalk (1.2.1+dfsg-1) ... Removing libjs-mathjax (2.7.9+dfsg-1) ... Removing fonts-mathjax (2.7.9+dfsg-1) ... Removing libstdc++-10-dev:amd64 (10.5.0-3) ... Removing libgcc-10-dev:amd64 (10.5.0-3) ... Removing libtsan0:amd64 (11.4.0-7) ... Removing libasan6:amd64 (11.4.0-7) ... Removing gcc-11-base:amd64 (11.4.0-7) ... Removing r-cran-bh (1.84.0-1) ... Removing libboost-dev:amd64 (1.83.0.2+b2) ... Removing libboost1.83-dev:amd64 (1.83.0-2.1) ... Removing libstdc++-13-dev:amd64 (13.2.0-18) ... Removing libgcc-13-dev:amd64 (13.2.0-18) ... Removing gcc-13-base:amd64 (13.2.0-18) ... Removing libstdc++-12-dev:amd64 (12.3.0-15) ... Removing libgcc-12-dev:amd64 (12.3.0-15) ... Removing libasan8:amd64 (14-20240303-1) ... Removing libatomic1:amd64 (14-20240303-1) ... Removing r-bioc-rhtslib (2.4.1+dfsg-3) ... Removing r-bioc-biomart (2.58.2+dfsg-1) ... Removing r-bioc-annotationdbi (1.64.1-1) ... Removing r-bioc-keggrest (1.42.0+dfsg-1) ... Removing r-bioc-biostrings (2.70.2+dfsg-1) ... Removing r-bioc-annotationfilter (1.26.0+dfsg-1) ... Removing r-bioc-genomicranges (1.54.1+dfsg-1) ... Removing r-bioc-xvector (0.42.0-1) ... Removing r-bioc-zlibbioc (1.48.0+dfsg-1) ... Removing zlib1g-dev:amd64 (1:1.3.dfsg-3.1) ... Removing libc6-dev:amd64 (2.37-15.1) ... Removing libc-dev-bin (2.37-15.1) ... Removing libcrypt-dev:amd64 (1:4.4.36-4) ... Removing libtiff5:amd64 (4.2.0-1+deb11u5) ... Removing r-cran-shiny (1.8.0+dfsg-1) ... Removing r-cran-xtable (1:1.8-4-2) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Removing r-cran-bslib (0.6.1+dfsg-1) ... Removing libjs-bootstrap4 (4.6.1+dfsg1-4) ... Removing libjs-popper.js (1.16.1+ds-6) ... Removing javascript-common (11+nmu1) ... dpkg: r-cran-httr: dependency problems, but removing anyway as you requested: r-bioc-biocfilecache depends on r-cran-httr. Removing r-cran-httr (1.4.7+dfsg-1) ... dpkg: r-cran-curl: dependency problems, but removing anyway as you requested: r-bioc-biocfilecache depends on r-cran-curl. Removing r-cran-curl (5.2.0+dfsg-1) ... dpkg: libcurl4t64:amd64: dependency problems, but removing anyway as you requested: r-base-core depends on libcurl4t64 (>= 7.28.0). r-cran-rcurl depends on libcurl4 (>= 7.16.2); however: Package libcurl4 is not installed. Package libcurl4t64:amd64 which provides libcurl4 is to be removed. Removing libcurl4t64:amd64 (8.6.0-3.2) ... dpkg: libbrotli1:amd64: dependency problems, but removing anyway as you requested: libfreetype6:amd64 depends on libbrotli1 (>= 0.6.0). Removing libbrotli1:amd64 (1.1.0-2+b3) ... dpkg: libxt6t64:amd64: dependency problems, but removing anyway as you requested: r-base-core depends on libxt6t64. Removing libxt6t64:amd64 (1:1.2.1-1.2) ... dpkg: libxss1:amd64: dependency problems, but removing anyway as you requested: libtk8.6:amd64 depends on libxss1. Removing libxss1:amd64 (1:1.2.3-1) ... dpkg: libx11-6:amd64: dependency problems, but removing anyway as you requested: r-base-core depends on libx11-6. libxrender1:amd64 depends on libx11-6 (>= 2:1.6.0). libxft2:amd64 depends on libx11-6. libxext6:amd64 depends on libx11-6 (>= 2:1.6.0). libtk8.6:amd64 depends on libx11-6. libcairo2:amd64 depends on libx11-6. Removing libx11-6:amd64 (2:1.8.7-1) ... dpkg: libxcb-shm0:amd64: dependency problems, but removing anyway as you requested: libcairo2:amd64 depends on libxcb-shm0. Removing libxcb-shm0:amd64 (1.15-1) ... dpkg: libxcb1:amd64: dependency problems, but removing anyway as you requested: libxcb-render0:amd64 depends on libxcb1 (>= 1.8). libcairo2:amd64 depends on libxcb1 (>= 1.6). Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libice6:amd64 (2:1.0.10-1) ... Removing libbsd0:amd64 (0.12.1-1) ... dpkg: libthai0:amd64: dependency problems, but removing anyway as you requested: libpango-1.0-0:amd64 depends on libthai0 (>= 0.1.25). Removing libthai0:amd64 (0.1.29-2) ... Removing libdatrie1:amd64 (0.2.13-3) ... dpkg: libtiff6:amd64: dependency problems, but removing anyway as you requested: r-base-core depends on libtiff6 (>= 4.0.3). Removing libtiff6:amd64 (4.5.1+git230720-4) ... Removing libdeflate0:amd64 (1.19-1) ... dpkg: libexpat1:amd64: dependency problems, but removing anyway as you requested: libfontconfig1:amd64 depends on libexpat1 (>= 2.0.1). Removing libexpat1:amd64 (2.6.2-1) ... dpkg: libfribidi0:amd64: dependency problems, but removing anyway as you requested: libpango-1.0-0:amd64 depends on libfribidi0 (>= 1.0.0). Removing libfribidi0:amd64 (1.0.13-3+b1) ... dpkg: libgfortran5:amd64: dependency problems, but removing anyway as you requested: liblapack3:amd64 depends on libgfortran5 (>= 8). Removing libgfortran5:amd64 (14-20240303-1) ... dpkg: libglib2.0-0t64:amd64: dependency problems, but removing anyway as you requested: r-base-core depends on libglib2.0-0t64 (>= 2.12.0). libpangoft2-1.0-0:amd64 depends on libglib2.0-0t64 (>= 2.68.0). libpangocairo-1.0-0:amd64 depends on libglib2.0-0t64 (>= 2.56.0). libpango-1.0-0:amd64 depends on libglib2.0-0t64 (>= 2.75.3). libharfbuzz0b:amd64 depends on libglib2.0-0t64 (>= 2.32.0). Removing libglib2.0-0t64:amd64 (2.78.4-4) ... dpkg: libgomp1:amd64: dependency problems, but removing anyway as you requested: r-base-core depends on libgomp1 (>= 4.9). Removing libgomp1:amd64 (14-20240303-1) ... dpkg: libgraphite2-3:amd64: dependency problems, but removing anyway as you requested: libharfbuzz0b:amd64 depends on libgraphite2-3 (>= 1.2.2). Removing libgraphite2-3:amd64 (1.3.14-2) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b3) ... dpkg: r-base-core: dependency problems, but removing anyway as you requested: r-cran-tidyselect depends on r-base-core (>= 4.2.1-2). r-cran-tidyselect depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-tibble depends on r-base-core (>= 4.3.1-2). r-cran-tibble depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-sys depends on r-base-core (>= 4.3.1-1). r-cran-sys depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-sourcetools depends on r-base-core (>= 4.2.2.20221110-2). r-cran-sourcetools depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-rjson depends on r-base-core (>= 4.1.2-1). r-cran-rjson depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-restfulr depends on r-base-core (>= 4.2.1-1). r-cran-restfulr depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-rappdirs depends on r-base-core (>= 4.0.3-1). r-cran-rappdirs depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-r6 depends on r-base-core (>= 4.1.1-2). r-cran-r6 depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-plogr depends on r-base-core (>= 4.0.0-3). r-cran-plogr depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-pkgkitten depends on r-base-core (>= 4.2.2.20221110-2). r-cran-pkgkitten depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-pkgconfig depends on r-base-core (>= 4.0.0-3). r-cran-pkgconfig depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-pillar depends on r-base-core (>= 4.3.0-1). r-cran-pillar depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-mime depends on r-base-core (>= 4.2.1-2). r-cran-mime depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-memoise depends on r-base-core (>= 4.1.2-1). r-cran-memoise depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-magrittr depends on r-base-core (>= 4.2.0-1). r-cran-magrittr depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-littler depends on r-base-core (>= 4.3.2-1). r-cran-littler depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-lazyeval depends on r-base-core (>= 4.0.0-3). r-cran-lazyeval depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-lambda.r depends on r-base-core (>= 4.0.0-3). r-cran-lambda.r depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-jquerylib depends on r-base-core (>= 4.2.1-2). r-cran-jquerylib depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-hms depends on r-base-core (>= 4.3.1-1). r-cran-hms depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-highr depends on r-base-core (>= 4.2.2.20221110-1). r-cran-highr depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-generics depends on r-base-core (>= 4.2.1-1). r-cran-generics depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-futile.options depends on r-base-core (>= 4.0.0-3). r-cran-futile.options depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-futile.logger depends on r-base-core (>= 4.0.0-3). r-cran-futile.logger depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-formatr depends on r-base-core (>= 4.2.2.20221110-1). r-cran-formatr depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-fastmap depends on r-base-core (>= 4.2.2.20221110-2). r-cran-fastmap depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-ellipsis depends on r-base-core (>= 4.1.1-2). r-cran-ellipsis depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-crayon depends on r-base-core (>= 4.2.1-2). r-cran-crayon depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-codetools depends on r-base-core (>= 4.2.2.20221110-2). r-cran-codetools depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-cachem depends on r-base-core (>= 4.3.0-1). r-cran-cachem depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-blob depends on r-base-core (>= 4.3.0-1). r-cran-blob depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-bitops depends on r-base-core (>= 4.1.1-2). r-cran-bitops depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-bit64 depends on r-base-core (>= 4.0.2-1). r-cran-bit64 depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-bit depends on r-base-core (>= 4.2.2.20221110-1). r-cran-bit depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-base64enc depends on r-base-core (>= 4.0.2-1). r-cran-base64enc depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-assertthat depends on r-base-core (>= 4.0.0-3). r-cran-assertthat depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-yaml depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-xml2 depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-xml depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-xfun depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-withr depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-vctrs depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-utf8 depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-tinytex depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-tidyselect depends on r-base-core (>= 4.2.1-2). r-cran-tidyselect depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-tidyr depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-tibble depends on r-base-core (>= 4.3.1-2). r-cran-tibble depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-sys depends on r-base-core (>= 4.3.1-1). r-cran-sys depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-stringr depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-stringi depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-sourcetools depends on r-base-core (>= 4.2.2.20221110-2). r-cran-sourcetools depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-sass depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-rsqlite depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-rlang depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-rjson depends on r-base-core (>= 4.1.2-1). r-cran-rjson depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-restfulr depends on r-base-core (>= 4.2.1-1). r-cran-restfulr depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-rcurl depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-rcpp depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-rappdirs depends on r-base-core (>= 4.0.3-1). r-cran-rappdirs depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-r6 depends on r-base-core (>= 4.1.1-2). r-cran-r6 depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-purrr depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-promises depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-progress depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-prettyunits depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-png depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-plogr depends on r-base-core (>= 4.0.0-3). r-cran-plogr depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-pkgkitten depends on r-base-core (>= 4.2.2.20221110-2). r-cran-pkgkitten depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-pkgconfig depends on r-base-core (>= 4.0.0-3). r-cran-pkgconfig depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-pillar depends on r-base-core (>= 4.3.0-1). r-cran-pillar depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-openssl depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-mime depends on r-base-core (>= 4.2.1-2). r-cran-mime depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-memoise depends on r-base-core (>= 4.1.2-1). r-cran-memoise depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-matrixstats depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-magrittr depends on r-base-core (>= 4.2.0-1). r-cran-magrittr depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-littler depends on r-base-core (>= 4.3.2-1). r-cran-littler depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-lifecycle depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-lazyeval depends on r-base-core (>= 4.0.0-3). r-cran-lazyeval depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-lattice depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-later depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-lambda.r depends on r-base-core (>= 4.0.0-3). r-cran-lambda.r depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-jsonlite depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-jquerylib depends on r-base-core (>= 4.2.1-2). r-cran-jquerylib depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-httpuv depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-htmltools depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-hms depends on r-base-core (>= 4.3.1-1). r-cran-hms depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-highr depends on r-base-core (>= 4.2.2.20221110-1). r-cran-highr depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-glue depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-generics depends on r-base-core (>= 4.2.1-1). r-cran-generics depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-futile.options depends on r-base-core (>= 4.0.0-3). r-cran-futile.options depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-futile.logger depends on r-base-core (>= 4.0.0-3). r-cran-futile.logger depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-fs depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-formatr depends on r-base-core (>= 4.2.2.20221110-1). r-cran-formatr depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-fontawesome depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-filelock depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-fastmap depends on r-base-core (>= 4.2.2.20221110-2). r-cran-fastmap depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-fansi depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-evaluate depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-ellipsis depends on r-base-core (>= 4.1.1-2). r-cran-ellipsis depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-dplyr depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-digest depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-dbplyr depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-dbi depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-crayon depends on r-base-core (>= 4.2.1-2). r-cran-crayon depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-cpp11 depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-commonmark depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-codetools depends on r-base-core (>= 4.2.2.20221110-2). r-cran-codetools depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-cli depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-cachem depends on r-base-core (>= 4.3.0-1). r-cran-cachem depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-blob depends on r-base-core (>= 4.3.0-1). r-cran-blob depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-bitops depends on r-base-core (>= 4.1.1-2). r-cran-bitops depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-bit64 depends on r-base-core (>= 4.0.2-1). r-cran-bit64 depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-bit depends on r-base-core (>= 4.2.2.20221110-1). r-cran-bit depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-biocmanager depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-base64enc depends on r-base-core (>= 4.0.2-1). r-cran-base64enc depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-assertthat depends on r-base-core (>= 4.0.0-3). r-cran-assertthat depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-cran-askpass depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-bioc-s4vectors depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-bioc-protgenerics depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-bioc-matrixgenerics depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-bioc-iranges depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-bioc-genomeinfodbdata depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-bioc-genomeinfodb depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-bioc-biocversion depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-bioc-biocio depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-bioc-biocgenerics depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-bioc-biocfilecache depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. r-bioc-biobase depends on r-api-4.0; however: Package r-api-4.0 is not installed. Package r-base-core which provides r-api-4.0 is to be removed. Removing r-base-core (4.3.3-3) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpangocairo-1.0-0:amd64 (1.52.1+ds-1) ... Removing libpangoft2-1.0-0:amd64 (1.52.1+ds-1) ... Removing libpango-1.0-0:amd64 (1.52.1+ds-1) ... Removing fontconfig (2.15.0-1.1) ... Removing libtk8.6:amd64 (8.6.14-1) ... Removing libxft2:amd64 (2.3.6-1+b1) ... Removing libcairo2:amd64 (1.18.0-2) ... Removing libfontconfig1:amd64 (2.15.0-1.1) ... Removing fontconfig-config (2.15.0-1.1) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... dpkg: libjs-bootstrap: dependency problems, but removing anyway as you requested: libjs-twitter-bootstrap-datepicker depends on libjs-bootstrap. Removing libjs-bootstrap (3.4.1+dfsg-3) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... dpkg: warning: while removing fonts-glyphicons-halflings, directory '/usr/share/fonts/truetype/glyphicons' not empty so not removed Removing liblapack3:amd64 (3.12.0-3) ... Removing libblas3:amd64 (3.12.0-3) ... Removing libharfbuzz0b:amd64 (8.3.0-2+b1) ... Removing libfreetype6:amd64 (2.13.2+dfsg-1+b2) ... Selecting previously unselected package libhogweed6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22357 files and directories currently installed.) Preparing to unpack .../libhogweed6_3.9.1-2+b1_amd64.deb ... Unpacking libhogweed6:amd64 (3.9.1-2+b1) ... Replaced by files in installed package libhogweed6t64:amd64 (3.9.1-2.2) ... dpkg: libhogweed6t64:amd64: dependency problems, but removing anyway as you requested: libgnutls30t64:amd64 depends on libhogweed6 (>= 3.6); however: Package libhogweed6:amd64 is not configured yet. Package libhogweed6t64:amd64 which provides libhogweed6 is to be removed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22362 files and directories currently installed.) Removing libhogweed6t64:amd64 (3.9.1-2.2) ... Setting up libhogweed6:amd64 (3.9.1-2+b1) ... Selecting previously unselected package libnettle8:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22355 files and directories currently installed.) Preparing to unpack .../libnettle8_3.9.1-2+b1_amd64.deb ... Unpacking libnettle8:amd64 (3.9.1-2+b1) ... Replaced by files in installed package libnettle8t64:amd64 (3.9.1-2.2) ... dpkg: libnettle8t64:amd64: dependency problems, but removing anyway as you requested: libhogweed6:amd64 depends on libnettle8; however: Package libnettle8:amd64 is not configured yet. Package libnettle8t64:amd64 which provides libnettle8 is to be removed. libgnutls30t64:amd64 depends on libnettle8 (>= 3.9~); however: Package libnettle8:amd64 is not configured yet. Package libnettle8t64:amd64 which provides libnettle8 is to be removed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22362 files and directories currently installed.) Removing libnettle8t64:amd64 (3.9.1-2.2) ... Setting up libnettle8:amd64 (3.9.1-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22353 files and directories currently installed.) Removing libhwasan0:amd64 (14-20240303-1) ... Removing libicu67:amd64 (67.1-7) ... Removing r-bioc-biocfilecache (2.10.1+dfsg-1) ... Removing r-cran-dbplyr (2.4.0+dfsg-1) ... Removing r-cran-tidyr (1.3.1-1) ... Removing r-cran-stringr (1.5.1-1) ... Removing r-cran-stringi (1.8.3-1) ... Removing r-cran-xml2 (1.3.6-1) ... Removing libitm1:amd64 (14-20240303-1) ... Removing libjbig0:amd64 (2.1-6.1+b1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-2+b2) ... Removing libjs-d3 (3.5.17-4) ... Removing libjs-es5-shim (4.6.7-2) ... Removing r-cran-highr (0.10+dfsg-1) ... Removing libjs-highlight.js (9.18.5+dfsg1-2) ... Removing r-cran-jquerylib (0.1.4+dfsg-4) ... Removing libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Removing libjs-jquery-datatables (1.11.5+dfsg-2) ... Removing libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing libjs-json (0~20221030+~1.0.8-1) ... Removing libjs-microplugin.js (0.0.3+dfsg-1.1) ... Removing libjs-modernizr (2.6.2+ds1-5) ... Removing libjs-prettify (2015.12.04+dfsg-1.1) ... Removing libjs-sifter.js (0.6.0+dfsg-3) ... Removing libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Removing libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Removing libldap-2.5-0:amd64 (2.5.16+dfsg-2) ... Removing liblerc4:amd64 (4.0.0+ds-4+b1) ... Removing liblsan0:amd64 (14-20240303-1) ... Removing liblua5.3-0:amd64 (5.3.6-2+b2) ... Removing pandoc (3.1.3+ds-2) ... Removing liblua5.4-0:amd64 (5.4.6-3+b1) ... Removing libnghttp2-14:amd64 (1.59.0-1+b1) ... Removing libnsl-dev:amd64 (1.3.0-3) ... Removing libpaper-utils (1.1.29) ... Removing libpaper1:amd64 (1.1.29) ... Removing libpixman-1-0:amd64 (0.42.2-1+b1) ... Removing r-cran-png (0.1-8-1+b1) ... Removing libpng16-16t64:amd64 (1.6.43-3) ... Removing libpsl5t64:amd64 (0.21.2-1.1) ... Removing libquadmath0:amd64 (14-20240303-1) ... Removing libreadline8t64:amd64 (8.2-3.1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsasl2-2:amd64 (2.1.28+dfsg1-4+b2) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-4+b2) ... Removing libwebp7:amd64 (1.3.2-0.4+b1) ... Removing libsharpyuv0:amd64 (1.3.2-0.4+b1) ... Removing libssh2-1t64:amd64 (1.11.0-4.1+b1) ... Removing libtcl8.6:amd64 (8.6.14+dfsg-1) ... Removing libthai-data (0.1.29-2) ... Removing libtirpc-dev:amd64 (1.3.4+ds-1.1) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: libxml2:amd64: dependency problems, but removing anyway as you requested: r-cran-xml depends on libxml2 (>= 2.7.4). Removing libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Removing libicu72:amd64 (72.1-4+b1) ... dpkg: libtirpc3t64:amd64: dependency problems, but removing anyway as you requested: libnsl2:amd64 depends on libtirpc3 (>= 1.0.2); however: Package libtirpc3 is not installed. Package libtirpc3t64:amd64 which provides libtirpc3 is to be removed. Removing libtirpc3t64:amd64 (1.3.4+ds-1.1) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Selecting previously unselected package libtirpc3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20050 files and directories currently installed.) Preparing to unpack .../libtirpc3_1.3.4+ds-1_amd64.deb ... Unpacking libtirpc3:amd64 (1.3.4+ds-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20057 files and directories currently installed.) Removing libtsan2:amd64 (14-20240303-1) ... Removing libubsan1:amd64 (14-20240303-1) ... Removing r-cran-httpuv (1.6.14+dfsg-1) ... Removing r-cran-sass (0.4.8+dfsg-1) ... Removing r-cran-fs (1.6.3+dfsg-1) ... Removing libuv1:amd64 (1.48.0-1) ... Removing libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Removing libx11-data (2:1.8.7-1) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing libxcb-render0:amd64 (1.15-1) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing libxrender1:amd64 (1:0.9.10-1.1) ... Removing libyaml-0-2:amd64 (0.2.5-1) ... Removing linux-libc-dev (6.7.9-2) ... Removing r-cran-promises (1.2.1+dfsg-1) ... Removing r-cran-later (1.3.2+dfsg-1) ... Removing r-cran-rcpp (1.0.12-1) ... Removing littler (0.3.19-1) ... Removing node-bootstrap-sass (3.4.3-2) ... Removing node-html5shiv (3.7.3+dfsg-5) ... Removing node-normalize.css (8.0.1-5) ... Removing openssl (3.1.5-1.1) ... Removing pandoc-data (3.1.3-1) ... Removing r-bioc-biobase (2.62.0-1) ... Removing r-cran-restfulr (0.0.15-1) ... Removing r-bioc-genomeinfodb (1.38.6+dfsg-1) ... Removing r-bioc-iranges (2.36.0-1) ... Removing r-bioc-protgenerics (1.34.0-1) ... Removing r-bioc-biocio (1.12.0+dfsg-1) ... Removing r-bioc-matrixgenerics (1.14.0-1) ... Removing r-bioc-biocversion (3.18.1-1) ... Removing r-bioc-genomeinfodbdata (1.2.11-2) ... Removing r-cran-openssl (2.1.1+dfsg-2+b1) ... Removing r-cran-askpass (1.2.0-1) ... Removing r-cran-assertthat (0.2.1-2) ... Removing r-cran-fontawesome (0.5.2-1) ... Removing r-cran-htmltools (0.5.7-1) ... Removing r-cran-base64enc (0.1-3-3) ... Removing r-cran-biocmanager (1.30.22+dfsg-2) ... Removing r-cran-rsqlite (2.3.4-1) ... Removing r-cran-bit64 (4.0.5-1) ... Removing r-cran-bit (4.0.5-1) ... Removing r-cran-rcurl (1.98-1.14+dfsg-1) ... Removing r-cran-bitops (1.0-7-1) ... Removing r-cran-blob (1.2.4-1) ... Removing r-cran-memoise (2.0.1-1) ... Removing r-cran-cachem (1.0.8-1) ... Removing r-cran-dplyr (1.1.4-1) ... Removing r-cran-tidyselect (1.2.0+dfsg-1) ... Removing r-cran-tibble (3.2.1+dfsg-2) ... Removing r-cran-purrr (1.0.2-1) ... Removing r-cran-codetools (0.2-19-1) ... Removing r-cran-commonmark (1.9.1-1) ... Removing r-cran-cpp11 (0.4.7-1) ... Removing r-cran-progress (1.2.3-1) ... Removing r-cran-crayon (1.5.2-1) ... Removing r-cran-dbi (1.2.2-1) ... Removing r-cran-digest (0.6.35-1) ... Removing r-cran-ellipsis (0.3.2-2) ... Removing r-cran-evaluate (0.23-1) ... Removing r-cran-pillar (1.9.0+dfsg-1) ... Removing r-cran-fansi (1.0.5-1) ... Removing r-cran-fastmap (1.1.1-1) ... Removing r-cran-filelock (1.0.3-1) ... Removing r-cran-futile.logger (1.4.3-4) ... Removing r-cran-lambda.r (1.2.4-2) ... Removing r-cran-formatr (1.14-1) ... Removing r-cran-futile.options (1.0.1-3) ... Removing r-cran-generics (0.1.3-1) ... Removing r-cran-hms (1.1.3-1) ... Removing r-cran-jsonlite (1.8.8+dfsg-1) ... Removing r-cran-lattice (0.22-5-1) ... Removing r-cran-lazyeval (0.2.2-1+b1) ... Removing r-cran-rjson (0.2.21-1) ... Removing r-cran-littler (0.3.19-1) ... Removing r-cran-magrittr (2.0.3-1) ... Removing r-cran-matrixstats (1.2.0-1) ... Removing r-cran-mime (0.12-1+b1) ... Removing r-cran-pkgconfig (2.0.3-2) ... Removing r-cran-pkgkitten (0.2.3-1) ... Removing r-cran-plogr (0.2.0-3) ... Removing r-cran-prettyunits (1.2.0-1) ... Removing r-cran-r6 (2.5.1-1) ... Removing r-cran-rappdirs (0.3.3-1) ... Removing r-cran-sourcetools (0.1.7-1-1) ... Removing r-cran-sys (3.4.2-1) ... Removing r-cran-tinytex (0.49-1) ... Removing r-cran-utf8 (1.2.4-1) ... Removing r-cran-withr (3.0.0+dfsg-1) ... Removing r-cran-xfun (0.41+dfsg-1) ... Removing r-cran-xml (3.99-0.16.1-1) ... Removing r-cran-yaml (2.3.8-1) ... Removing readline-common (8.2-3.1) ... Removing rpcsvc-proto (1.4.3-1) ... Removing ucf (3.0043+nmu1) ... Removing sensible-utils (0.0.22) ... Removing unzip (6.0-28) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.1.3-4.1) ... Removing zip (3.0-13) ... Removing r-bioc-s4vectors (0.40.2+dfsg-1) ... Removing r-bioc-biocgenerics (0.48.1-2) ... Removing r-cran-vctrs (0.6.5-1) ... Removing r-cran-lifecycle (1.0.4+dfsg-1) ... Removing r-cran-glue (1.7.0-1) ... Removing r-cran-rlang (1.1.3-1) ... Removing r-cran-cli (3.6.2-1) ... Setting up libtirpc3:amd64 (1.3.4+ds-1) ... Processing triggers for libc-bin (2.37-15.1) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. 3m29.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', '-y', '--no-install-recommends', '--force-yes', 'install', 'libhogweed6:amd64=3.9.1-2+b1', 'libnettle8:amd64=3.9.1-2+b1', 'libtirpc3:amd64=1.3.4+ds-1', 'ca-certificates-', 'fontconfig-', 'fontconfig-config-', 'fonts-dejavu-core-', 'fonts-dejavu-mono-', 'fonts-font-awesome-', 'fonts-glyphicons-halflings-', 'fonts-mathjax-', 'gcc-11-base:amd64-', 'gcc-13-base:amd64-', 'javascript-common-', 'libasan6:amd64-', 'libasan8:amd64-', 'libatomic1:amd64-', 'libblas3:amd64-', 'libboost-dev:amd64-', 'libboost1.83-dev:amd64-', 'libbrotli1:amd64-', 'libbsd0:amd64-', 'libc-dev-bin-', 'libc6-dev:amd64-', 'libcairo2:amd64-', 'libcrypt-dev:amd64-', 'libcurl4t64:amd64-', 'libdatrie1:amd64-', 'libdeflate0:amd64-', 'libexpat1:amd64-', 'libfontconfig1:amd64-', 'libfreetype6:amd64-', 'libfribidi0:amd64-', 'libgcc-10-dev:amd64-', 'libgcc-12-dev:amd64-', 'libgcc-13-dev:amd64-', 'libgfortran5:amd64-', 'libglib2.0-0:amd64-', 'libglib2.0-0t64:amd64-', 'libgomp1:amd64-', 'libgraphite2-3:amd64-', 'libharfbuzz0b:amd64-', 'libhogweed6t64:amd64-', 'libhwasan0:amd64-', 'libice6:amd64-', 'libicu67:amd64-', 'libicu72:amd64-', 'libitm1:amd64-', 'libjbig0:amd64-', 'libjpeg62-turbo:amd64-', 'libjs-bootstrap-', 'libjs-bootstrap4-', 'libjs-d3-', 'libjs-es5-shim-', 'libjs-highlight.js-', 'libjs-jquery-', 'libjs-jquery-datatables-', 'libjs-jquery-datatables-extensions-', 'libjs-jquery-selectize.js-', 'libjs-jquery-ui-', 'libjs-json-', 'libjs-mathjax-', 'libjs-microplugin.js-', 'libjs-modernizr-', 'libjs-popper.js-', 'libjs-prettify-', 'libjs-sifter.js-', 'libjs-twitter-bootstrap-datepicker-', 'liblapack3:amd64-', 'libldap-2.4-2:amd64-', 'libldap-2.5-0:amd64-', 'liblerc4:amd64-', 'liblsan0:amd64-', 'liblua5.3-0:amd64-', 'liblua5.4-0:amd64-', 'libnettle8t64:amd64-', 'libnghttp2-14:amd64-', 'libnsl-dev:amd64-', 'libpango-1.0-0:amd64-', 'libpangocairo-1.0-0:amd64-', 'libpangoft2-1.0-0:amd64-', 'libpaper-utils-', 'libpaper1:amd64-', 'libpixman-1-0:amd64-', 'libpng16-16t64:amd64-', 'libpsl5t64:amd64-', 'libquadmath0:amd64-', 'libreadline8t64:amd64-', 'librtmp1:amd64-', 'libsasl2-2:amd64-', 'libsasl2-modules-db:amd64-', 'libsharpyuv0:amd64-', 'libsm6:amd64-', 'libssh2-1t64:amd64-', 'libstdc++-10-dev:amd64-', 'libstdc++-12-dev:amd64-', 'libstdc++-13-dev:amd64-', 'libtcl8.6:amd64-', 'libthai-data-', 'libthai0:amd64-', 'libtiff5:amd64-', 'libtiff6:amd64-', 'libtirpc-dev:amd64-', 'libtirpc3t64:amd64-', 'libtk8.6:amd64-', 'libtsan0:amd64-', 'libtsan2:amd64-', 'libubsan1:amd64-', 'libuv1:amd64-', 'libwebp6:amd64-', 'libwebp7:amd64-', 'libx11-6:amd64-', 'libx11-data-', 'libxau6:amd64-', 'libxcb-render0:amd64-', 'libxcb-shm0:amd64-', 'libxcb1:amd64-', 'libxdmcp6:amd64-', 'libxext6:amd64-', 'libxft2:amd64-', 'libxml2:amd64-', 'libxrender1:amd64-', 'libxss1:amd64-', 'libxt6t64:amd64-', 'libyaml-0-2:amd64-', 'linux-libc-dev-', 'littler-', 'node-bootstrap-sass-', 'node-html5shiv-', 'node-normalize.css-', 'openssl-', 'pandoc-', 'pandoc-data-', 'r-base-core-', 'r-bioc-annotationdbi-', 'r-bioc-annotationfilter-', 'r-bioc-annotationhub-', 'r-bioc-biobase-', 'r-bioc-biocfilecache-', 'r-bioc-biocgenerics-', 'r-bioc-biocio-', 'r-bioc-biocparallel-', 'r-bioc-biocversion-', 'r-bioc-biomart-', 'r-bioc-biostrings-', 'r-bioc-delayedarray-', 'r-bioc-ensembldb-', 'r-bioc-experimenthub-', 'r-bioc-genomeinfodb-', 'r-bioc-genomeinfodbdata-', 'r-bioc-genomicalignments-', 'r-bioc-genomicfeatures-', 'r-bioc-genomicranges-', 'r-bioc-interactivedisplaybase-', 'r-bioc-iranges-', 'r-bioc-keggrest-', 'r-bioc-matrixgenerics-', 'r-bioc-protgenerics-', 'r-bioc-rhtslib-', 'r-bioc-rsamtools-', 'r-bioc-rtracklayer-', 'r-bioc-s4arrays-', 'r-bioc-s4vectors-', 'r-bioc-singlecellexperiment-', 'r-bioc-sparsearray-', 'r-bioc-summarizedexperiment-', 'r-bioc-xvector-', 'r-bioc-zlibbioc-', 'r-cran-abind-', 'r-cran-askpass-', 'r-cran-assertthat-', 'r-cran-base64enc-', 'r-cran-bh-', 'r-cran-biocmanager-', 'r-cran-bit-', 'r-cran-bit64-', 'r-cran-bitops-', 'r-cran-blob-', 'r-cran-bslib-', 'r-cran-cachem-', 'r-cran-cli-', 'r-cran-codetools-', 'r-cran-commonmark-', 'r-cran-cpp11-', 'r-cran-crayon-', 'r-cran-crosstalk-', 'r-cran-curl-', 'r-cran-dbi-', 'r-cran-dbplyr-', 'r-cran-digest-', 'r-cran-dplyr-', 'r-cran-dt-', 'r-cran-ellipsis-', 'r-cran-evaluate-', 'r-cran-fansi-', 'r-cran-fastmap-', 'r-cran-filelock-', 'r-cran-fontawesome-', 'r-cran-formatr-', 'r-cran-fs-', 'r-cran-futile.logger-', 'r-cran-futile.options-', 'r-cran-generics-', 'r-cran-glue-', 'r-cran-highr-', 'r-cran-hms-', 'r-cran-htmltools-', 'r-cran-htmlwidgets-', 'r-cran-httpuv-', 'r-cran-httr-', 'r-cran-jquerylib-', 'r-cran-jsonlite-', 'r-cran-knitr-', 'r-cran-lambda.r-', 'r-cran-later-', 'r-cran-lattice-', 'r-cran-lazyeval-', 'r-cran-lifecycle-', 'r-cran-littler-', 'r-cran-magrittr-', 'r-cran-matrix-', 'r-cran-matrixstats-', 'r-cran-memoise-', 'r-cran-mime-', 'r-cran-openssl-', 'r-cran-pillar-', 'r-cran-pkgconfig-', 'r-cran-pkgkitten-', 'r-cran-plogr-', 'r-cran-png-', 'r-cran-prettyunits-', 'r-cran-progress-', 'r-cran-promises-', 'r-cran-purrr-', 'r-cran-r6-', 'r-cran-rappdirs-', 'r-cran-rcpp-', 'r-cran-rcurl-', 'r-cran-restfulr-', 'r-cran-rjson-', 'r-cran-rlang-', 'r-cran-rmarkdown-', 'r-cran-rsqlite-', 'r-cran-sass-', 'r-cran-shiny-', 'r-cran-snow-', 'r-cran-sourcetools-', 'r-cran-stringi-', 'r-cran-stringr-', 'r-cran-sys-', 'r-cran-tibble-', 'r-cran-tidyr-', 'r-cran-tidyselect-', 'r-cran-tinytex-', 'r-cran-utf8-', 'r-cran-vctrs-', 'r-cran-withr-', 'r-cran-xfun-', 'r-cran-xml-', 'r-cran-xml2-', 'r-cran-xtable-', 'r-cran-yaml-', 'readline-common-', 'rpcsvc-proto-', 'sensible-utils-', 'ucf-', 'unzip-', 'x11-common-', 'xdg-utils-', 'zip-', 'zlib1g-dev:amd64-', 'r-bioc-scrnaseq-'] 3m29.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', '-y', '--no-install-recommends', '--reinstall', 'install', 'libhogweed6:amd64=3.9.1-2+b1', 'libnettle8:amd64=3.9.1-2+b1', 'libtirpc3:amd64=1.3.4+ds-1'] 3m30.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: gcc-12-base libperl5.36 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 0 newly installed, 3 reinstalled, 0 to remove and 0 not upgraded. Need to get 0 B/705 kB of archives. After this operation, 0 B of additional disk space will be used. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9471 files and directories currently installed.) Preparing to unpack .../libhogweed6_3.9.1-2+b1_amd64.deb ... Unpacking libhogweed6:amd64 (3.9.1-2+b1) over (3.9.1-2+b1) ... Preparing to unpack .../libnettle8_3.9.1-2+b1_amd64.deb ... Unpacking libnettle8:amd64 (3.9.1-2+b1) over (3.9.1-2+b1) ... Setting up libnettle8:amd64 (3.9.1-2+b1) ... Setting up libhogweed6:amd64 (3.9.1-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9475 files and directories currently installed.) Preparing to unpack .../libtirpc3_1.3.4+ds-1_amd64.deb ... Unpacking libtirpc3:amd64 (1.3.4+ds-1) over (1.3.4+ds-1) ... Setting up libtirpc3:amd64 (1.3.4+ds-1) ... Processing triggers for libc-bin (2.37-15.1) ... 3m30.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', '-y', '--no-install-recommends', '--reinstall', 'install', 'libhogweed6:amd64=3.9.1-2+b1', 'libnettle8:amd64=3.9.1-2+b1', 'libtirpc3:amd64=1.3.4+ds-1'] 3m30.2s INFO: Running scripts post_remove 3m30.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_remove_exceptions'] 3m30.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_remove_exceptions'] 3m30.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'dpkg', '--purge', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'gcc-11-base:amd64', 'gcc-13-base:amd64', 'javascript-common', 'libasan6:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcrypt-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-10-dev:amd64', 'libgcc-12-dev:amd64', 'libgcc-13-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhogweed6t64:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu67:amd64', 'libicu72:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-datatables-extensions', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'liblua5.3-0:amd64', 'liblua5.4-0:amd64', 'libnettle8t64:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libssh2-1t64:amd64', 'libstdc++-10-dev:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-13-dev:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtiff6:amd64', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev', 'littler', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openssl', 'pandoc', 'pandoc-data', 'r-base-core', 'r-bioc-annotationdbi', 'r-bioc-annotationfilter', 'r-bioc-annotationhub', 'r-bioc-biobase', 'r-bioc-biocfilecache', 'r-bioc-biocgenerics', 'r-bioc-biocio', 'r-bioc-biocparallel', 'r-bioc-biocversion', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-delayedarray', 'r-bioc-ensembldb', 'r-bioc-experimenthub', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-interactivedisplaybase', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-matrixgenerics', 'r-bioc-protgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-singlecellexperiment', 'r-bioc-sparsearray', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-askpass', 'r-cran-assertthat', 'r-cran-base64enc', 'r-cran-bh', 'r-cran-biocmanager', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-cli', 'r-cran-codetools', 'r-cran-commonmark', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-crosstalk', 'r-cran-curl', 'r-cran-dbi', 'r-cran-dbplyr', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-dt', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-fontawesome', 'r-cran-formatr', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mime', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plogr', 'r-cran-png', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-restfulr', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rsqlite', 'r-cran-sass', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xml2', 'r-cran-xtable', 'r-cran-yaml', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64'] 3m30.9s DUMP: (Reading database ... 9475 files and directories currently installed.) Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for fontconfig (2.15.0-1.1) ... Purging configuration files for fontconfig-config (2.15.0-1.1) ... dpkg: warning: while removing fontconfig-config, directory '/etc/fonts/conf.d' not empty so not removed Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... dpkg: warning: while removing fonts-dejavu-mono, directory '/usr/share/fonts/truetype/dejavu' not empty so not removed dpkg: warning: while removing fonts-dejavu-mono, directory '/etc/fonts' not empty so not removed Purging configuration files for fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/truetype/font-awesome' not empty so not removed dpkg: warning: while removing fonts-font-awesome, directory '/usr/share/fonts/opentype/font-awesome' not empty so not removed dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which isn't installed dpkg: warning: ignoring request to remove fonts-mathjax which isn't installed dpkg: warning: ignoring request to remove gcc-11-base which isn't installed dpkg: warning: ignoring request to remove gcc-13-base which isn't installed Purging configuration files for javascript-common (11+nmu1) ... dpkg: warning: ignoring request to remove libasan6 which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libboost-dev which isn't installed dpkg: warning: ignoring request to remove libboost1.83-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.36-4) ... dpkg: warning: ignoring request to remove libcurl4t64 which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgcc-10-dev which isn't installed dpkg: warning: ignoring request to remove libgcc-12-dev which isn't installed dpkg: warning: ignoring request to remove libgcc-13-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0t64:amd64 (2.78.4-4) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhogweed6t64 which isn't installed dpkg: warning: ignoring request to remove libhwasan0 which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu67 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjs-bootstrap which isn't installed Purging configuration files for libjs-bootstrap4 (4.6.1+dfsg1-4) ... dpkg: warning: ignoring request to remove libjs-d3 which isn't installed dpkg: warning: ignoring request to remove libjs-es5-shim which isn't installed dpkg: warning: ignoring request to remove libjs-highlight.js which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-jquery-datatables which isn't installed dpkg: warning: ignoring request to remove libjs-jquery-datatables-extensions which isn't installed dpkg: warning: ignoring request to remove libjs-jquery-selectize.js which isn't installed dpkg: warning: ignoring request to remove libjs-jquery-ui which isn't installed dpkg: warning: ignoring request to remove libjs-json which isn't installed dpkg: warning: ignoring request to remove libjs-mathjax which isn't installed dpkg: warning: ignoring request to remove libjs-microplugin.js which isn't installed dpkg: warning: ignoring request to remove libjs-modernizr which isn't installed Purging configuration files for libjs-popper.js (1.16.1+ds-6) ... dpkg: warning: ignoring request to remove libjs-prettify which isn't installed dpkg: warning: ignoring request to remove libjs-sifter.js which isn't installed dpkg: warning: ignoring request to remove libjs-twitter-bootstrap-datepicker which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove liblua5.3-0 which isn't installed dpkg: warning: ignoring request to remove liblua5.4-0 which isn't installed dpkg: warning: ignoring request to remove libnettle8t64 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnsl-dev which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper1:amd64 (1.1.29) ... dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-3.1) ... dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed dpkg: warning: ignoring request to remove libstdc++-10-dev which isn't installed dpkg: warning: ignoring request to remove libstdc++-12-dev which isn't installed dpkg: warning: ignoring request to remove libstdc++-13-dev which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed dpkg: warning: ignoring request to remove libtirpc-dev which isn't installed Purging configuration files for libtirpc3t64:amd64 (1.3.4+ds-1.1) ... dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libtsan0 which isn't installed dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libuv1 which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libxt6t64 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove littler which isn't installed dpkg: warning: ignoring request to remove node-bootstrap-sass which isn't installed dpkg: warning: ignoring request to remove node-html5shiv which isn't installed dpkg: warning: ignoring request to remove node-normalize.css which isn't installed Purging configuration files for openssl (3.1.5-1.1) ... dpkg: warning: ignoring request to remove pandoc which isn't installed dpkg: warning: ignoring request to remove pandoc-data which isn't installed Purging configuration files for r-base-core (4.3.3-3) ... dpkg: warning: ignoring request to remove r-bioc-annotationdbi which isn't installed dpkg: warning: ignoring request to remove r-bioc-annotationfilter which isn't installed dpkg: warning: ignoring request to remove r-bioc-annotationhub which isn't installed dpkg: warning: ignoring request to remove r-bioc-biobase which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocfilecache which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocio which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocparallel which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocversion which isn't installed dpkg: warning: ignoring request to remove r-bioc-biomart which isn't installed dpkg: warning: ignoring request to remove r-bioc-biostrings which isn't installed dpkg: warning: ignoring request to remove r-bioc-delayedarray which isn't installed dpkg: warning: ignoring request to remove r-bioc-ensembldb which isn't installed dpkg: warning: ignoring request to remove r-bioc-experimenthub which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomeinfodb which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomeinfodbdata which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicalignments which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicfeatures which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-interactivedisplaybase which isn't installed dpkg: warning: ignoring request to remove r-bioc-iranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-keggrest which isn't installed dpkg: warning: ignoring request to remove r-bioc-matrixgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-protgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-rhtslib which isn't installed dpkg: warning: ignoring request to remove r-bioc-rsamtools which isn't installed dpkg: warning: ignoring request to remove r-bioc-rtracklayer which isn't installed dpkg: warning: ignoring request to remove r-bioc-s4arrays which isn't installed dpkg: warning: ignoring request to remove r-bioc-s4vectors which isn't installed dpkg: warning: ignoring request to remove r-bioc-singlecellexperiment which isn't installed dpkg: warning: ignoring request to remove r-bioc-sparsearray which isn't installed dpkg: warning: ignoring request to remove r-bioc-summarizedexperiment which isn't installed dpkg: warning: ignoring request to remove r-bioc-xvector which isn't installed dpkg: warning: ignoring request to remove r-bioc-zlibbioc which isn't installed dpkg: warning: ignoring request to remove r-cran-abind which isn't installed dpkg: warning: ignoring request to remove r-cran-askpass which isn't installed dpkg: warning: ignoring request to remove r-cran-assertthat which isn't installed dpkg: warning: ignoring request to remove r-cran-base64enc which isn't installed dpkg: warning: ignoring request to remove r-cran-bh which isn't installed dpkg: warning: ignoring request to remove r-cran-biocmanager which isn't installed dpkg: warning: ignoring request to remove r-cran-bit which isn't installed dpkg: warning: ignoring request to remove r-cran-bit64 which isn't installed dpkg: warning: ignoring request to remove r-cran-bitops which isn't installed dpkg: warning: ignoring request to remove r-cran-blob which isn't installed dpkg: warning: ignoring request to remove r-cran-bslib which isn't installed dpkg: warning: ignoring request to remove r-cran-cachem which isn't installed dpkg: warning: ignoring request to remove r-cran-cli which isn't installed dpkg: warning: ignoring request to remove r-cran-codetools which isn't installed dpkg: warning: ignoring request to remove r-cran-commonmark which isn't installed dpkg: warning: ignoring request to remove r-cran-cpp11 which isn't installed dpkg: warning: ignoring request to remove r-cran-crayon which isn't installed dpkg: warning: ignoring request to remove r-cran-crosstalk which isn't installed dpkg: warning: ignoring request to remove r-cran-curl which isn't installed dpkg: warning: ignoring request to remove r-cran-dbi which isn't installed dpkg: warning: ignoring request to remove r-cran-dbplyr which isn't installed dpkg: warning: ignoring request to remove r-cran-digest which isn't installed dpkg: warning: ignoring request to remove r-cran-dplyr which isn't installed dpkg: warning: ignoring request to remove r-cran-dt which isn't installed dpkg: warning: ignoring request to remove r-cran-ellipsis which isn't installed dpkg: warning: ignoring request to remove r-cran-evaluate which isn't installed dpkg: warning: ignoring request to remove r-cran-fansi which isn't installed dpkg: warning: ignoring request to remove r-cran-fastmap which isn't installed dpkg: warning: ignoring request to remove r-cran-filelock which isn't installed dpkg: warning: ignoring request to remove r-cran-fontawesome which isn't installed dpkg: warning: ignoring request to remove r-cran-formatr which isn't installed dpkg: warning: ignoring request to remove r-cran-fs which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.logger which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.options which isn't installed dpkg: warning: ignoring request to remove r-cran-generics which isn't installed dpkg: warning: ignoring request to remove r-cran-glue which isn't installed dpkg: warning: ignoring request to remove r-cran-highr which isn't installed dpkg: warning: ignoring request to remove r-cran-hms which isn't installed dpkg: warning: ignoring request to remove r-cran-htmltools which isn't installed dpkg: warning: ignoring request to remove r-cran-htmlwidgets which isn't installed dpkg: warning: ignoring request to remove r-cran-httpuv which isn't installed dpkg: warning: ignoring request to remove r-cran-httr which isn't installed dpkg: warning: ignoring request to remove r-cran-jquerylib which isn't installed dpkg: warning: ignoring request to remove r-cran-jsonlite which isn't installed dpkg: warning: ignoring request to remove r-cran-knitr which isn't installed dpkg: warning: ignoring request to remove r-cran-lambda.r which isn't installed dpkg: warning: ignoring request to remove r-cran-later which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-lazyeval which isn't installed dpkg: warning: ignoring request to remove r-cran-lifecycle which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-matrixstats which isn't installed dpkg: warning: ignoring request to remove r-cran-memoise which isn't installed dpkg: warning: ignoring request to remove r-cran-mime which isn't installed dpkg: warning: ignoring request to remove r-cran-openssl which isn't installed dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-plogr which isn't installed dpkg: warning: ignoring request to remove r-cran-png which isn't installed dpkg: warning: ignoring request to remove r-cran-prettyunits which isn't installed dpkg: warning: ignoring request to remove r-cran-progress which isn't installed dpkg: warning: ignoring request to remove r-cran-promises which isn't installed dpkg: warning: ignoring request to remove r-cran-purrr which isn't installed dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed dpkg: warning: ignoring request to remove r-cran-rappdirs which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-rcurl which isn't installed dpkg: warning: ignoring request to remove r-cran-restfulr which isn't installed dpkg: warning: ignoring request to remove r-cran-rjson which isn't installed dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed dpkg: warning: ignoring request to remove r-cran-rmarkdown which isn't installed dpkg: warning: ignoring request to remove r-cran-rsqlite which isn't installed dpkg: warning: ignoring request to remove r-cran-sass which isn't installed dpkg: warning: ignoring request to remove r-cran-shiny which isn't installed dpkg: warning: ignoring request to remove r-cran-snow which isn't installed dpkg: warning: ignoring request to remove r-cran-sourcetools which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-sys which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyr which isn't installed dpkg: warning: ignoring request to remove r-cran-tidyselect which isn't installed dpkg: warning: ignoring request to remove r-cran-tinytex which isn't installed dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed dpkg: warning: ignoring request to remove r-cran-vctrs which isn't installed dpkg: warning: ignoring request to remove r-cran-withr which isn't installed dpkg: warning: ignoring request to remove r-cran-xfun which isn't installed dpkg: warning: ignoring request to remove r-cran-xml which isn't installed dpkg: warning: ignoring request to remove r-cran-xml2 which isn't installed dpkg: warning: ignoring request to remove r-cran-xtable which isn't installed dpkg: warning: ignoring request to remove r-cran-yaml which isn't installed Purging configuration files for readline-common (8.2-3.1) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed Purging configuration files for ucf (3.0043+nmu1) ... Purging configuration files for unzip (6.0-28) ... Purging configuration files for x11-common (1:7.7+23) ... dpkg: warning: while removing x11-common, directory '/etc/init.d' not empty so not removed dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 3m30.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'dpkg', '--purge', 'ca-certificates', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-font-awesome', 'fonts-glyphicons-halflings', 'fonts-mathjax', 'gcc-11-base:amd64', 'gcc-13-base:amd64', 'javascript-common', 'libasan6:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcrypt-dev:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-10-dev:amd64', 'libgcc-12-dev:amd64', 'libgcc-13-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhogweed6t64:amd64', 'libhwasan0:amd64', 'libice6:amd64', 'libicu67:amd64', 'libicu72:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-bootstrap4', 'libjs-d3', 'libjs-es5-shim', 'libjs-highlight.js', 'libjs-jquery', 'libjs-jquery-datatables', 'libjs-jquery-datatables-extensions', 'libjs-jquery-selectize.js', 'libjs-jquery-ui', 'libjs-json', 'libjs-mathjax', 'libjs-microplugin.js', 'libjs-modernizr', 'libjs-popper.js', 'libjs-prettify', 'libjs-sifter.js', 'libjs-twitter-bootstrap-datepicker', 'liblapack3:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'liblua5.3-0:amd64', 'liblua5.4-0:amd64', 'libnettle8t64:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libssh2-1t64:amd64', 'libstdc++-10-dev:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-13-dev:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtiff6:amd64', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev', 'littler', 'node-bootstrap-sass', 'node-html5shiv', 'node-normalize.css', 'openssl', 'pandoc', 'pandoc-data', 'r-base-core', 'r-bioc-annotationdbi', 'r-bioc-annotationfilter', 'r-bioc-annotationhub', 'r-bioc-biobase', 'r-bioc-biocfilecache', 'r-bioc-biocgenerics', 'r-bioc-biocio', 'r-bioc-biocparallel', 'r-bioc-biocversion', 'r-bioc-biomart', 'r-bioc-biostrings', 'r-bioc-delayedarray', 'r-bioc-ensembldb', 'r-bioc-experimenthub', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicfeatures', 'r-bioc-genomicranges', 'r-bioc-interactivedisplaybase', 'r-bioc-iranges', 'r-bioc-keggrest', 'r-bioc-matrixgenerics', 'r-bioc-protgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-rtracklayer', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-singlecellexperiment', 'r-bioc-sparsearray', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-askpass', 'r-cran-assertthat', 'r-cran-base64enc', 'r-cran-bh', 'r-cran-biocmanager', 'r-cran-bit', 'r-cran-bit64', 'r-cran-bitops', 'r-cran-blob', 'r-cran-bslib', 'r-cran-cachem', 'r-cran-cli', 'r-cran-codetools', 'r-cran-commonmark', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-crosstalk', 'r-cran-curl', 'r-cran-dbi', 'r-cran-dbplyr', 'r-cran-digest', 'r-cran-dplyr', 'r-cran-dt', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-fastmap', 'r-cran-filelock', 'r-cran-fontawesome', 'r-cran-formatr', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-generics', 'r-cran-glue', 'r-cran-highr', 'r-cran-hms', 'r-cran-htmltools', 'r-cran-htmlwidgets', 'r-cran-httpuv', 'r-cran-httr', 'r-cran-jquerylib', 'r-cran-jsonlite', 'r-cran-knitr', 'r-cran-lambda.r', 'r-cran-later', 'r-cran-lattice', 'r-cran-lazyeval', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-memoise', 'r-cran-mime', 'r-cran-openssl', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plogr', 'r-cran-png', 'r-cran-prettyunits', 'r-cran-progress', 'r-cran-promises', 'r-cran-purrr', 'r-cran-r6', 'r-cran-rappdirs', 'r-cran-rcpp', 'r-cran-rcurl', 'r-cran-restfulr', 'r-cran-rjson', 'r-cran-rlang', 'r-cran-rmarkdown', 'r-cran-rsqlite', 'r-cran-sass', 'r-cran-shiny', 'r-cran-snow', 'r-cran-sourcetools', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-sys', 'r-cran-tibble', 'r-cran-tidyr', 'r-cran-tidyselect', 'r-cran-tinytex', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-withr', 'r-cran-xfun', 'r-cran-xml', 'r-cran-xml2', 'r-cran-xtable', 'r-cran-yaml', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'ucf', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64'] 3m30.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'dpkg', '--purge', 'r-bioc-scrnaseq'] 3m30.9s DUMP: dpkg: warning: ignoring request to remove r-bioc-scrnaseq which isn't installed 3m30.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'dpkg', '--purge', 'r-bioc-scrnaseq'] 3m30.9s INFO: Running scripts post_purge 3m30.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_purge_exceptions'] 3m30.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_purge_exceptions'] 3m30.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'dpkg', '--purge', '--pending'] 3m30.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'dpkg', '--purge', '--pending'] 3m30.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'dpkg', '--remove', '--pending'] 3m30.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'dpkg', '--remove', '--pending'] 3m30.9s INFO: Running scripts post_test 3m30.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_test_exceptions'] 3m30.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'tmp/scripts/post_test_exceptions'] 3m30.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9'] 3m31.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9'] 3m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'dpkg-divert', '--list'] 3m31.6s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 3m31.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'dpkg-divert', '--list'] 3m31.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', 'clean'] 3m31.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9', 'apt-get', 'clean'] 3m31.8s DEBUG: Recording chroot state 3m32.7s INFO: Warning: Package purging left files on system: /etc/fonts/ owned by: fontconfig-config, fonts-dejavu-mono, fonts-dejavu-core /etc/fonts/conf.d/ owned by: fontconfig-config, fonts-dejavu-mono, fonts-dejavu-core /etc/fonts/conf.d/70-no-bitmaps-except-emoji.conf -> /usr/share/fontconfig/conf.avail/70-no-bitmaps-except-emoji.conf not owned /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: fonts-dejavu-mono, fonts-dejavu-core, fonts-mathjax, fonts-glyphicons-halflings, fonts-font-awesome /usr/share/fonts/.uuid not owned /usr/share/fonts/opentype/ owned by: fonts-mathjax, fonts-font-awesome /usr/share/fonts/opentype/.uuid not owned /usr/share/fonts/opentype/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/opentype/font-awesome/.uuid not owned /usr/share/fonts/truetype/ owned by: fonts-dejavu-mono, fonts-dejavu-core, fonts-glyphicons-halflings, fonts-font-awesome /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/dejavu/ owned by: fonts-dejavu-mono, fonts-dejavu-core /usr/share/fonts/truetype/dejavu/.uuid not owned /usr/share/fonts/truetype/font-awesome/ owned by: fonts-font-awesome /usr/share/fonts/truetype/font-awesome/.uuid not owned /usr/share/fonts/truetype/glyphicons/ owned by: fonts-glyphicons-halflings /usr/share/fonts/truetype/glyphicons/.uuid not owned 3m33.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9/dev/shm'] 3m33.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9/dev/shm'] 3m33.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9/dev/console'] 3m33.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9/dev/console'] 3m33.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9/dev/ptmx'] 3m33.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9/dev/ptmx'] 3m33.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9/dev/pts'] 3m33.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9/dev/pts'] 3m33.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9/proc'] 3m33.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9/proc'] 3m33.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9'] 3m33.6s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpym7b3fk9'] 3m33.6s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpym7b3fk9 3m33.6s INFO: PASS: Upgrading between Debian distributions. 3m33.6s INFO: PASS: All tests. 3m33.6s INFO: piuparts run ends. ret=0 End: 2024-03-14 12:11:00 GMT