Start: 2024-02-23 09:22:40 GMT [stable] Package: shovill Version: 1.1.0-4 Installed-Size: 39 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl:any, spades, velvet, skesa, megahit, flash, lighter, samtools, bwa, kmc, seqtk, pilon, trimmomatic, pigz, samclip Description: Assemble bacterial isolate genomes from Illumina paired-end reads Homepage: https://github.com/tseemann/shovill Description-md5: 8695f2fc2647e597d0b8f3983a621eea Section: science Priority: optional Filename: pool/main/s/shovill/shovill_1.1.0-4_amd64.deb Size: 12652 MD5sum: 3ef88b1fbf883897cb5d9be86ce641bb SHA256: a76a2953734b1c693fe8362d077c6af1dca914b38a4f65b3de1d6cfa775793d6 [testing] Package: shovill Version: 1.1.0-9 Installed-Size: 40 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl:any, spades, velvet, skesa, megahit, flash, lighter, samtools, bwa, kmc, seqtk, pilon, trimmomatic, pigz, samclip Description: Assemble bacterial isolate genomes from Illumina paired-end reads Homepage: https://github.com/tseemann/shovill Description-md5: 8695f2fc2647e597d0b8f3983a621eea Section: science Priority: optional Filename: pool/main/s/shovill/shovill_1.1.0-9_amd64.deb Size: 13488 MD5sum: 17ed6cadd0b6dd8fc411afb3b24ee02c SHA256: f648c19fe514a541e6ca6495f3d99269fa504888757f8a07f2a6536133fea77c [sid] Package: shovill Version: 1.1.0-9 Installed-Size: 40 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl:any, spades, velvet, skesa, megahit, flash, lighter, samtools, bwa, kmc, seqtk, pilon, trimmomatic, pigz, samclip Description: Assemble bacterial isolate genomes from Illumina paired-end reads Homepage: https://github.com/tseemann/shovill Description-md5: 8695f2fc2647e597d0b8f3983a621eea Section: science Priority: optional Filename: pool/main/s/shovill/shovill_1.1.0-9_amd64.deb Size: 13488 MD5sum: 17ed6cadd0b6dd8fc411afb3b24ee02c SHA256: f648c19fe514a541e6ca6495f3d99269fa504888757f8a07f2a6536133fea77c Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat --apt shovill=1.1.0-9 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.3.1~202401311821~1.3-2-g28295102 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat --apt shovill=1.1.0-9 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpg85mmkgu 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpg85mmkgu 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m2.0s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu/proc'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu/proc'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu/dev/pts'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu/dev/pts'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu/dev/ptmx'] 0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu/dev/ptmx'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu/dev/console'] 0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu/dev/console'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu/dev/shm'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu/dev/shm'] 0m2.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m2.1s DEBUG: Created policy-rc.d and chmodded it. 0m2.1s DEBUG: Created resolv.conf. 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpg85mmkgu/tmp/scripts/ 0m2.1s INFO: Running scripts post_chroot_unpack 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-get', 'update'] 0m6.6s DUMP: Get:1 http://deb.debian.org/debian bullseye InRelease [116 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 Packages [8068 kB] Get:3 http://deb.debian.org/debian bullseye/main Translation-en [6236 kB] Fetched 14.4 MB in 4s (3966 kB/s) Reading package lists... 0m6.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-get', 'update'] 0m6.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-get', '-yf', 'dist-upgrade'] 0m9.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: base-files libc-bin libc6 libgnutls30 perl-base tar tzdata 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 7841 kB of archives. After this operation, 44.0 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 base-files amd64 11.1+deb11u9 [70.2 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 perl-base amd64 5.32.1-4+deb11u3 [1628 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 tar amd64 1.34+dfsg-1+deb11u1 [847 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libc6 amd64 2.31-13+deb11u8 [2823 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 libc-bin amd64 2.31-13+deb11u8 [829 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libgnutls30 amd64 3.7.1-5+deb11u4 [1340 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 tzdata all 2024a-0+deb11u1 [304 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7841 kB in 0s (61.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../base-files_11.1+deb11u9_amd64.deb ... Unpacking base-files (11.1+deb11u9) over (11.1+deb11u8) ... Setting up base-files (11.1+deb11u9) ... Installing new version of config file /etc/debian_version ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../perl-base_5.32.1-4+deb11u3_amd64.deb ... Unpacking perl-base (5.32.1-4+deb11u3) over (5.32.1-4+deb11u2) ... Setting up perl-base (5.32.1-4+deb11u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../tar_1.34+dfsg-1+deb11u1_amd64.deb ... Unpacking tar (1.34+dfsg-1+deb11u1) over (1.34+dfsg-1) ... Setting up tar (1.34+dfsg-1+deb11u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../libc6_2.31-13+deb11u8_amd64.deb ... Unpacking libc6:amd64 (2.31-13+deb11u8) over (2.31-13+deb11u6) ... Setting up libc6:amd64 (2.31-13+deb11u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../libc-bin_2.31-13+deb11u8_amd64.deb ... Unpacking libc-bin (2.31-13+deb11u8) over (2.31-13+deb11u6) ... Setting up libc-bin (2.31-13+deb11u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.1-5+deb11u4_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.1-5+deb11u4) over (3.7.1-5+deb11u3) ... Setting up libgnutls30:amd64 (3.7.1-5+deb11u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../tzdata_2024a-0+deb11u1_all.deb ... Unpacking tzdata (2024a-0+deb11u1) over (2021a-1+deb11u10) ... Setting up tzdata (2024a-0+deb11u1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Feb 23 09:22:50 UTC 2024. Universal Time is now: Fri Feb 23 09:22:50 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Processing triggers for libc-bin (2.31-13+deb11u8) ... 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-get', '-yf', 'dist-upgrade'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m10.2s DUMP: 29fcf27583012b383113cec2bf757015 - 0m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m10.2s INFO: Running scripts post_setup 0m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_setup_dummy_users'] 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_setup_dummy_users'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_setup_forbid_home'] 0m11.2s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m11.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_setup_forbid_home'] 0m11.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_setup_force-unsafe-io'] 0m11.3s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_setup_force-unsafe-io'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_setup_minimize'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_setup_minimize'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_setup_squeeze-backports'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_setup_squeeze-backports'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_setup_zz_backports'] 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_setup_zz_backports'] 0m11.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m11.3s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u9 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u8 install ok installed libc6:amd64 libc6 2.31-13+deb11u8 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m11.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m11.3s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat 0m11.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu'] 0m11.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu'] 0m11.9s INFO: Running scripts is_testable 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/is_testable_uninstallable'] 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/is_testable_uninstallable'] 0m11.9s INFO: Running scripts pre_test 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_test_exceptions'] 0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_test_exceptions'] 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_test_root_password'] 0m12.0s DUMP: New password: Retype new password: passwd: password updated successfully 0m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_test_root_password'] 0m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-cache', 'show', '--no-all-versions', 'shovill'] 0m12.2s DUMP: Package: shovill Version: 1.1.0-4 Installed-Size: 39 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl:any, spades, velvet, skesa, megahit, flash, lighter, samtools, bwa, kmc, seqtk, pilon, trimmomatic, pigz, samclip Description-en: Assemble bacterial isolate genomes from Illumina paired-end reads Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other assemblers like SKESA, Velvet and Megahit, so you can take advantage of the pre- and post-processing the Shovill provides with those too. Description-md5: 8695f2fc2647e597d0b8f3983a621eea Homepage: https://github.com/tseemann/shovill Section: science Priority: optional Filename: pool/main/s/shovill/shovill_1.1.0-4_amd64.deb Size: 12652 MD5sum: 3ef88b1fbf883897cb5d9be86ce641bb SHA256: a76a2953734b1c693fe8362d077c6af1dca914b38a4f65b3de1d6cfa775793d6 0m12.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-cache', 'show', '--no-all-versions', 'shovill'] 0m12.2s INFO: apt-cache knows about the following packages: shovill 0m12.2s INFO: Running scripts pre_install 0m12.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_database-server'] 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_database-server'] 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_exceptions'] 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_exceptions'] 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_extras'] 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_extras'] 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-cache', 'policy'] 0m12.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.9,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-cache', 'policy'] 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-cache', 'policy', 'shovill'] 0m12.4s DUMP: shovill: Installed: (none) Candidate: 1.1.0-4 Version table: 1.1.0-4 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-cache', 'policy', 'shovill'] 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-get', '-y', 'install', 'shovill'] 0m52.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ant ant-optional bamtools bwa bzip2 ca-certificates ca-certificates-java default-jre default-jre-headless flash fontconfig-config fonts-dejavu-core java-common java-wrappers kmc libactivation-java libaopalliance-java libapache-pom-java libargs4j-java libasound2 libasound2-data libatinject-jsr330-api-java libavahi-client3 libavahi-common-data libavahi-common3 libbamtools2.5.1 libbrotli1 libbsd0 libcdi-api-java libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java libcommons-logging-java libcommons-parent-java libcups2 libcurl3-gnutls libdbus-1-3 libdeflate0 libdom4j-java libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdtd-parser-java libedit2 libelf1 libexpat1 libfastinfoset-java libfontconfig1 libfreetype6 libgdbm-compat4 libgdbm6 libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libguava-java libguice-java libharfbuzz0b libhat-trie0 libhts3 libhtsjdk-java libhttpclient-java libhttpcore-java libicu67 libistack-commons-java libjaxb-api-java libjaxb-java libjaxen-java libjbzip2-java libjpeg62-turbo libjsoncpp24 libjsoup-java libjsr305-java liblcms2-2 libldap-2.4-2 libllvm11 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libmpdec3 libncbi-vdb2 libncurses6 libncursesw6 libnghttp2-14 libngs-java libngs-sdk-dev libngs-sdk2 libnlopt0 libnspr4 libnss3 libpciaccess0 libpcsclite1 libperl5.32 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libpng16-16 libprocps8 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libreadline8 librelaxng-datatype-java librngom-java librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsisu-inject-java libsisu-plexus-java libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libsqlite3-0 libssh2-1 libssw0 libstax-ex-java libstreambuffer-java libtxw2-java libvulkan1 libwagon-http-java libwagon-provider-api-java libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxml-commons-resolver1.1-java libxml2 libxrender1 libxshmfence1 libxsom-java libxtst6 libxxf86vm1 libxz-java libyaml-0-2 libz3-4 lighter media-types megahit openjdk-11-jre openjdk-11-jre-headless openssl perl perl-modules-5.32 pigz pilon procps python3 python3-all python3-distutils python3-joblib python3-lib2to3 python3-minimal python3-pkg-resources python3-yaml python3.9 python3.9-minimal readline-common samclip samtools scala-library sensible-utils seqtk skesa spades trimmomatic ucf unzip velvet x11-common Suggested packages: ant-doc default-jdk | java-compiler | java-sdk antlr javacc junit junit4 jython libbcel-java libbsf-java libcommons-net-java libmail-java libjaxp1.3-java libjdepend-java libjsch-java liblog4j1.2-java liboro-java libregexp-java libxalan2-java bzip2-doc libaopalliance-java-doc libasound2-plugins alsa-utils libatinject-jsr330-api-java-doc libel-api-java libcommons-io-java-doc libcommons-lang-java-doc libcommons-lang3-java-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java cups-common libdom4j-java-doc libmsv-java libxpp2-java libxpp3-java gdbm-l10n libasm-java libcglib-java picard-tools libjdom1-java libxom-java libjsoup-java-doc libjsr305-java-doc liblcms2-utils libmaven-file-management-java-doc libmaven-shared-io-java-doc libmaven-shared-utils-java-doc liblogback-java pciutils pcscd libplexus-classworlds-java-doc libplexus-sec-dispatcher-java-doc libplexus-utils2-java-doc lm-sensors testng libxml-commons-resolver1.1-java-doc libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python3-setuptools python3.9-venv python3.9-doc binutils binfmt-support readline-doc cwltool zip velvet-example Recommended packages: alsa-ucm-conf alsa-topology-conf dbus libglib2.0-data shared-mime-info xdg-user-dirs libldap-common libjansi-java libgpm2 publicsuffix libsasl2-modules mesa-vulkan-drivers | vulkan-icd libatk-wrapper-java-jni fonts-dejavu-extra netbase psmisc python3-numpy python3-pytest python3-simplejson python3-psutil The following NEW packages will be installed: ant ant-optional bamtools bwa bzip2 ca-certificates ca-certificates-java default-jre default-jre-headless flash fontconfig-config fonts-dejavu-core java-common java-wrappers kmc libactivation-java libaopalliance-java libapache-pom-java libargs4j-java libasound2 libasound2-data libatinject-jsr330-api-java libavahi-client3 libavahi-common-data libavahi-common3 libbamtools2.5.1 libbrotli1 libbsd0 libcdi-api-java libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java libcommons-logging-java libcommons-parent-java libcups2 libcurl3-gnutls libdbus-1-3 libdeflate0 libdom4j-java libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdtd-parser-java libedit2 libelf1 libexpat1 libfastinfoset-java libfontconfig1 libfreetype6 libgdbm-compat4 libgdbm6 libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libguava-java libguice-java libharfbuzz0b libhat-trie0 libhts3 libhtsjdk-java libhttpclient-java libhttpcore-java libicu67 libistack-commons-java libjaxb-api-java libjaxb-java libjaxen-java libjbzip2-java libjpeg62-turbo libjsoncpp24 libjsoup-java libjsr305-java liblcms2-2 libldap-2.4-2 libllvm11 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libmpdec3 libncbi-vdb2 libncurses6 libncursesw6 libnghttp2-14 libngs-java libngs-sdk-dev libngs-sdk2 libnlopt0 libnspr4 libnss3 libpciaccess0 libpcsclite1 libperl5.32 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libpng16-16 libprocps8 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libreadline8 librelaxng-datatype-java librngom-java librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsisu-inject-java libsisu-plexus-java libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libsqlite3-0 libssh2-1 libssw0 libstax-ex-java libstreambuffer-java libtxw2-java libvulkan1 libwagon-http-java libwagon-provider-api-java libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxml-commons-resolver1.1-java libxml2 libxrender1 libxshmfence1 libxsom-java libxtst6 libxxf86vm1 libxz-java libyaml-0-2 libz3-4 lighter media-types megahit openjdk-11-jre openjdk-11-jre-headless openssl perl perl-modules-5.32 pigz pilon procps python3 python3-all python3-distutils python3-joblib python3-lib2to3 python3-minimal python3-pkg-resources python3-yaml python3.9 python3.9-minimal readline-common samclip samtools scala-library sensible-utils seqtk shovill skesa spades trimmomatic ucf unzip velvet x11-common 0 upgraded, 215 newly installed, 0 to remove and 0 not upgraded. Need to get 157 MB of archives. After this operation, 564 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 perl-modules-5.32 all 5.32.1-4+deb11u3 [2823 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.19-2 [64.9 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.19-2 [44.7 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libperl5.32 amd64 5.32.1-4+deb11u3 [4121 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 perl amd64 5.32.1-4+deb11u3 [293 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 pigz amd64 2.6-1 [64.0 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.2+20201114-2+deb11u2 [132 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2+deb11u2 [102 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:25 http://deb.debian.org/debian bullseye/main amd64 bzip2 amd64 1.0.8-4 [49.3 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1w-0+deb11u1 [859 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 libnspr4 amd64 2:4.29-1 [112 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 libnss3 amd64 2:3.61-1+deb11u3 [1305 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 ca-certificates-java all 20190909+deb11u1 [15.9 kB] Get:32 http://deb.debian.org/debian bullseye/main amd64 java-common all 0.72 [14.5 kB] Get:33 http://deb.debian.org/debian bullseye/main amd64 libavahi-common-data amd64 0.8-5+deb11u2 [124 kB] Get:34 http://deb.debian.org/debian bullseye/main amd64 libavahi-common3 amd64 0.8-5+deb11u2 [58.7 kB] Get:35 http://deb.debian.org/debian bullseye/main amd64 libdbus-1-3 amd64 1.12.28-0+deb11u1 [223 kB] Get:36 http://deb.debian.org/debian bullseye/main amd64 libavahi-client3 amd64 0.8-5+deb11u2 [62.6 kB] Get:37 http://deb.debian.org/debian bullseye/main amd64 libcups2 amd64 2.3.3op2-3+deb11u6 [351 kB] Get:38 http://deb.debian.org/debian bullseye/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get:39 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get:40 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:41 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:42 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1+deb11u1 [418 kB] Get:43 http://deb.debian.org/debian bullseye/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:44 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:45 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:46 http://deb.debian.org/debian bullseye/main amd64 libasound2-data all 1.2.4-1.1 [38.2 kB] Get:47 http://deb.debian.org/debian bullseye/main amd64 libasound2 amd64 1.2.4-1.1 [356 kB] Get:48 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-0 amd64 2.66.8-1+deb11u1 [1374 kB] Get:49 http://deb.debian.org/debian bullseye/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:50 http://deb.debian.org/debian bullseye/main amd64 libharfbuzz0b amd64 2.7.4-1 [1471 kB] Get:51 http://deb.debian.org/debian bullseye/main amd64 libpcsclite1 amd64 1.9.1-1 [60.2 kB] Get:52 http://deb.debian.org/debian bullseye/main amd64 openjdk-11-jre-headless amd64 11.0.22+7-1~deb11u1 [38.2 MB] Get:53 http://deb.debian.org/debian bullseye/main amd64 default-jre-headless amd64 2:1.11-72 [10.9 kB] Get:54 http://deb.debian.org/debian bullseye/main amd64 ant all 1.10.9-4 [2118 kB] Get:55 http://deb.debian.org/debian bullseye/main amd64 ant-optional all 1.10.9-4 [381 kB] Get:56 http://deb.debian.org/debian bullseye/main amd64 libbamtools2.5.1 amd64 2.5.1+dfsg-9 [158 kB] Get:57 http://deb.debian.org/debian bullseye/main amd64 libjsoncpp24 amd64 1.9.4-4 [78.9 kB] Get:58 http://deb.debian.org/debian bullseye/main amd64 bamtools amd64 2.5.1+dfsg-9 [183 kB] Get:59 http://deb.debian.org/debian bullseye/main amd64 bwa amd64 0.7.17-6+b1 [212 kB] Get:60 http://deb.debian.org/debian bullseye/main amd64 libglvnd0 amd64 1.3.2-1 [53.6 kB] Get:61 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:62 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get:63 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1+deb11u1 [108 kB] Get:64 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:65 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:66 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1+deb11u2 [311 kB] Get:67 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1+deb11u2 [772 kB] Get:68 http://deb.debian.org/debian bullseye/main amd64 libdrm-common all 2.4.104-1 [14.9 kB] Get:69 http://deb.debian.org/debian bullseye/main amd64 libdrm2 amd64 2.4.104-1 [41.5 kB] Get:70 http://deb.debian.org/debian bullseye/main amd64 libglapi-mesa amd64 20.3.5-1 [71.7 kB] Get:71 http://deb.debian.org/debian bullseye/main amd64 libx11-xcb1 amd64 2:1.7.2-1+deb11u2 [204 kB] Get:72 http://deb.debian.org/debian bullseye/main amd64 libxcb-dri2-0 amd64 1.14-3 [103 kB] Get:73 http://deb.debian.org/debian bullseye/main amd64 libxcb-dri3-0 amd64 1.14-3 [102 kB] Get:74 http://deb.debian.org/debian bullseye/main amd64 libxcb-glx0 amd64 1.14-3 [118 kB] Get:75 http://deb.debian.org/debian bullseye/main amd64 libxcb-present0 amd64 1.14-3 [101 kB] Get:76 http://deb.debian.org/debian bullseye/main amd64 libxcb-shm0 amd64 1.14-3 [101 kB] Get:77 http://deb.debian.org/debian bullseye/main amd64 libxcb-sync1 amd64 1.14-3 [105 kB] Get:78 http://deb.debian.org/debian bullseye/main amd64 libxcb-xfixes0 amd64 1.14-3 [105 kB] Get:79 http://deb.debian.org/debian bullseye/main amd64 libxdamage1 amd64 1:1.1.5-2 [15.7 kB] Get:80 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get:81 http://deb.debian.org/debian bullseye/main amd64 libxfixes3 amd64 1:5.0.3-2 [22.1 kB] Get:82 http://deb.debian.org/debian bullseye/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:83 http://deb.debian.org/debian bullseye/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:84 http://deb.debian.org/debian bullseye/main amd64 libdrm-amdgpu1 amd64 2.4.104-1 [28.5 kB] Get:85 http://deb.debian.org/debian bullseye/main amd64 libpciaccess0 amd64 0.16-1 [53.6 kB] Get:86 http://deb.debian.org/debian bullseye/main amd64 libdrm-intel1 amd64 2.4.104-1 [71.8 kB] Get:87 http://deb.debian.org/debian bullseye/main amd64 libdrm-nouveau2 amd64 2.4.104-1 [26.8 kB] Get:88 http://deb.debian.org/debian bullseye/main amd64 libdrm-radeon1 amd64 2.4.104-1 [30.2 kB] Get:89 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get:90 http://deb.debian.org/debian bullseye/main amd64 libedit2 amd64 3.1-20191231-2+b1 [96.7 kB] Get:91 http://deb.debian.org/debian bullseye/main amd64 libz3-4 amd64 4.8.10-1 [6949 kB] Get:92 http://deb.debian.org/debian bullseye/main amd64 libllvm11 amd64 1:11.0.1-2 [17.9 MB] Get:93 http://deb.debian.org/debian bullseye/main amd64 libsensors-config all 1:3.6.0-7 [32.3 kB] Get:94 http://deb.debian.org/debian bullseye/main amd64 libsensors5 amd64 1:3.6.0-7 [52.3 kB] Get:95 http://deb.debian.org/debian bullseye/main amd64 libvulkan1 amd64 1.2.162.0-1 [103 kB] Get:96 http://deb.debian.org/debian bullseye/main amd64 libgl1-mesa-dri amd64 20.3.5-1 [9633 kB] Get:97 http://deb.debian.org/debian bullseye/main amd64 libglx-mesa0 amd64 20.3.5-1 [186 kB] Get:98 http://deb.debian.org/debian bullseye/main amd64 libglx0 amd64 1.3.2-1 [35.7 kB] Get:99 http://deb.debian.org/debian bullseye/main amd64 libgl1 amd64 1.3.2-1 [89.5 kB] Get:100 http://deb.debian.org/debian bullseye/main amd64 libgif7 amd64 5.1.9-2 [45.1 kB] Get:101 http://deb.debian.org/debian bullseye/main amd64 libxi6 amd64 2:1.7.10-1 [83.4 kB] Get:102 http://deb.debian.org/debian bullseye/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:103 http://deb.debian.org/debian bullseye/main amd64 x11-common all 1:7.7+22 [252 kB] Get:104 http://deb.debian.org/debian bullseye/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get:105 http://deb.debian.org/debian bullseye/main amd64 openjdk-11-jre amd64 11.0.22+7-1~deb11u1 [194 kB] Get:106 http://deb.debian.org/debian bullseye/main amd64 default-jre amd64 2:1.11-72 [1044 B] Get:107 http://deb.debian.org/debian bullseye/main amd64 flash amd64 1.2.11-2 [124 kB] Get:108 http://deb.debian.org/debian bullseye/main amd64 unzip amd64 6.0-26+deb11u1 [172 kB] Get:109 http://deb.debian.org/debian bullseye/main amd64 java-wrappers all 0.3 [10.9 kB] Get:110 http://deb.debian.org/debian bullseye/main amd64 kmc amd64 3.1.1+dfsg-3+b2 [882 kB] Get:111 http://deb.debian.org/debian bullseye/main amd64 libactivation-java all 1.2.0-2 [84.7 kB] Get:112 http://deb.debian.org/debian bullseye/main amd64 libaopalliance-java all 20070526-6 [9048 B] Get:113 http://deb.debian.org/debian bullseye/main amd64 libapache-pom-java all 18-1 [4676 B] Get:114 http://deb.debian.org/debian bullseye/main amd64 libargs4j-java all 2.33-1.1 [137 kB] Get:115 http://deb.debian.org/debian bullseye/main amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get:116 http://deb.debian.org/debian bullseye/main amd64 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4 [8484 B] Get:117 http://deb.debian.org/debian bullseye/main amd64 libcdi-api-java all 1.2-3 [54.3 kB] Get:118 http://deb.debian.org/debian bullseye/main amd64 libjaxen-java all 1.1.6-4 [214 kB] Get:119 http://deb.debian.org/debian bullseye/main amd64 libdom4j-java all 2.1.3-1 [310 kB] Get:120 http://deb.debian.org/debian bullseye/main amd64 libcommons-parent-java all 43-1 [10.8 kB] Get:121 http://deb.debian.org/debian bullseye/main amd64 libcommons-io-java all 2.8.0-1 [279 kB] Get:122 http://deb.debian.org/debian bullseye/main amd64 libmaven-shared-utils-java all 3.3.0-1+deb11u1 [149 kB] Get:123 http://deb.debian.org/debian bullseye/main amd64 libcommons-cli-java all 1.4-2 [57.3 kB] Get:124 http://deb.debian.org/debian bullseye/main amd64 libcommons-lang3-java all 3.11-1 [550 kB] Get:125 http://deb.debian.org/debian bullseye/main amd64 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.1 kB] Get:126 http://deb.debian.org/debian bullseye/main amd64 libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get:127 http://deb.debian.org/debian bullseye/main amd64 libguava-java all 29.0-6 [2419 kB] Get:128 http://deb.debian.org/debian bullseye/main amd64 libguice-java all 4.2.3-2 [1435 kB] Get:129 http://deb.debian.org/debian bullseye/main amd64 libmaven-parent-java all 31-2 [5100 B] Get:130 http://deb.debian.org/debian bullseye/main amd64 libplexus-utils2-java all 3.3.0-1 [250 kB] Get:131 http://deb.debian.org/debian bullseye/main amd64 libwagon-provider-api-java all 3.3.4-1 [50.2 kB] Get:132 http://deb.debian.org/debian bullseye/main amd64 libmaven-resolver-java all 1.4.2-3 [556 kB] Get:133 http://deb.debian.org/debian bullseye/main amd64 libplexus-cipher-java all 1.8-2 [15.0 kB] Get:134 http://deb.debian.org/debian bullseye/main amd64 libplexus-classworlds-java all 2.6.0-1 [49.4 kB] Get:135 http://deb.debian.org/debian bullseye/main amd64 libplexus-component-annotations-java all 2.1.0-1 [7620 B] Get:136 http://deb.debian.org/debian bullseye/main amd64 libplexus-interpolation-java all 1.26-1 [76.8 kB] Get:137 http://deb.debian.org/debian bullseye/main amd64 libplexus-sec-dispatcher-java all 1.4-4 [28.1 kB] Get:138 http://deb.debian.org/debian bullseye/main amd64 libslf4j-java all 1.7.30-1 [144 kB] Get:139 http://deb.debian.org/debian bullseye/main amd64 libsisu-inject-java all 0.3.4-2 [347 kB] Get:140 http://deb.debian.org/debian bullseye/main amd64 libsisu-plexus-java all 0.3.4-3 [181 kB] Get:141 http://deb.debian.org/debian bullseye/main amd64 libmaven3-core-java all 3.6.3-5 [1538 kB] Get:142 http://deb.debian.org/debian bullseye/main amd64 libmaven-shared-io-java all 3.0.0-3 [33.3 kB] Get:143 http://deb.debian.org/debian bullseye/main amd64 libmaven-file-management-java all 3.0.0-1 [35.1 kB] Get:144 http://deb.debian.org/debian bullseye/main amd64 libcommons-compress-java all 1.20-1 [574 kB] Get:145 http://deb.debian.org/debian bullseye/main amd64 libplexus-io-java all 3.2.0-1.1 [65.0 kB] Get:146 http://deb.debian.org/debian bullseye/main amd64 libsnappy1v5 amd64 1.1.8-1 [17.9 kB] Get:147 http://deb.debian.org/debian bullseye/main amd64 libsnappy-jni amd64 1.1.8.3-1 [7152 B] Get:148 http://deb.debian.org/debian bullseye/main amd64 libsnappy-java all 1.1.8.3-1 [98.9 kB] Get:149 http://deb.debian.org/debian bullseye/main amd64 libxz-java all 1.8-2 [141 kB] Get:150 http://deb.debian.org/debian bullseye/main amd64 libplexus-archiver-java all 3.6.0-2 [171 kB] Get:151 http://deb.debian.org/debian bullseye/main amd64 libhttpcore-java all 4.4.14-1 [631 kB] Get:152 http://deb.debian.org/debian bullseye/main amd64 libcommons-codec-java all 1.15-1 [292 kB] Get:153 http://deb.debian.org/debian bullseye/main amd64 libcommons-logging-java all 1.2-2 [62.2 kB] Get:154 http://deb.debian.org/debian bullseye/main amd64 libhttpclient-java all 4.5.13-2 [1233 kB] Get:155 http://deb.debian.org/debian bullseye/main amd64 libjsoup-java all 1.10.2-2 [350 kB] Get:156 http://deb.debian.org/debian bullseye/main amd64 libwagon-http-java all 3.3.4-1 [53.9 kB] Get:157 http://deb.debian.org/debian bullseye/main amd64 libistack-commons-java all 3.0.6-5 [145 kB] Get:158 http://deb.debian.org/debian bullseye/main amd64 libcodemodel-java all 2.6+jaxb2.3.0.1-10 [163 kB] Get:159 http://deb.debian.org/debian bullseye/main amd64 libcommons-jexl2-java all 2.1.1-5 [256 kB] Get:160 http://deb.debian.org/debian bullseye/main amd64 libcommons-lang-java all 2.6-9 [273 kB] Get:161 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1+deb11u1 [69.1 kB] Get:162 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1+deb11u1 [106 kB] Get:163 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3+deb11u1 [232 kB] Get:164 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1+deb11u1 [77.2 kB] Get:165 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:166 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:167 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get:168 http://deb.debian.org/debian bullseye/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+deb11u11 [344 kB] Get:169 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get:170 http://deb.debian.org/debian bullseye/main amd64 libdtd-parser-java all 1.2-1 [64.9 kB] Get:171 http://deb.debian.org/debian bullseye/main amd64 libjaxb-api-java all 2.3.1-1 [119 kB] Get:172 http://deb.debian.org/debian bullseye/main amd64 libstax-ex-java all 1.7.8-3 [40.9 kB] Get:173 http://deb.debian.org/debian bullseye/main amd64 libstreambuffer-java all 1.5.4-1.1 [74.0 kB] Get:174 http://deb.debian.org/debian bullseye/main amd64 librelaxng-datatype-java all 1.0+ds1-3.1 [11.7 kB] Get:175 http://deb.debian.org/debian bullseye/main amd64 libxsom-java all 2.3.0.1-10 [396 kB] Get:176 http://deb.debian.org/debian bullseye/main amd64 libfastinfoset-java all 1.2.12-3 [343 kB] Get:177 http://deb.debian.org/debian bullseye/main amd64 libgomp1 amd64 10.2.1-6 [99.9 kB] Get:178 http://deb.debian.org/debian bullseye/main amd64 libhat-trie0 amd64 0.1.2-2 [11.8 kB] Get:179 http://deb.debian.org/debian bullseye/main amd64 libhts3 amd64 1.11-4 [378 kB] Get:180 http://deb.debian.org/debian bullseye/main amd64 librngom-java all 2.3.0.1-10 [288 kB] Get:181 http://deb.debian.org/debian bullseye/main amd64 libtxw2-java all 2.3.0.1-10 [134 kB] Get:182 http://deb.debian.org/debian bullseye/main amd64 libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] Get:183 http://deb.debian.org/debian bullseye/main amd64 libjaxb-java all 2.3.0.1-10 [1954 kB] Get:184 http://deb.debian.org/debian bullseye/main amd64 libngs-sdk2 amd64 2.10.9-1 [59.2 kB] Get:185 http://deb.debian.org/debian bullseye/main amd64 libngs-sdk-dev amd64 2.10.9-1 [104 kB] Get:186 http://deb.debian.org/debian bullseye/main amd64 libngs-java amd64 2.10.9-1 [80.4 kB] Get:187 http://deb.debian.org/debian bullseye/main amd64 libhtsjdk-java all 2.23.0+dfsg-2 [1607 kB] Get:188 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:189 http://deb.debian.org/debian bullseye/main amd64 libjbzip2-java all 0.9.1-5 [42.6 kB] Get:190 http://deb.debian.org/debian bullseye/main amd64 libmbedcrypto3 amd64 2.16.9-0.1 [219 kB] Get:191 http://deb.debian.org/debian bullseye/main amd64 libmbedx509-0 amd64 2.16.9-0.1 [109 kB] Get:192 http://deb.debian.org/debian bullseye/main amd64 libmbedtls12 amd64 2.16.9-0.1 [139 kB] Get:193 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get:194 http://deb.debian.org/debian bullseye/main amd64 libncbi-vdb2 amd64 2.10.9+dfsg-2 [1266 kB] Get:195 http://deb.debian.org/debian bullseye/main amd64 libnlopt0 amd64 2.7.0-4+b2 [172 kB] Get:196 http://deb.debian.org/debian bullseye/main amd64 libssw0 amd64 1.1-13 [19.7 kB] Get:197 http://deb.debian.org/debian bullseye/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:198 http://deb.debian.org/debian bullseye/main amd64 lighter amd64 1.1.2-5 [46.7 kB] Get:199 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get:200 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get:201 http://deb.debian.org/debian bullseye/main amd64 python3-all amd64 3.9.2-3 [1056 B] Get:202 http://deb.debian.org/debian bullseye/main amd64 megahit amd64 1.2.9-2 [1036 kB] Get:203 http://deb.debian.org/debian bullseye/main amd64 scala-library all 2.11.12-4 [9589 kB] Get:204 http://deb.debian.org/debian bullseye/main amd64 pilon all 1.23+dfsg-2 [500 kB] Get:205 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get:206 http://deb.debian.org/debian bullseye/main amd64 python3-joblib all 0.17.0-4+deb11u1 [214 kB] Get:207 http://deb.debian.org/debian bullseye/main amd64 python3-yaml amd64 5.3.1-5 [138 kB] Get:208 http://deb.debian.org/debian bullseye/main amd64 samclip all 0.4.0-2 [19.9 kB] Get:209 http://deb.debian.org/debian bullseye/main amd64 samtools amd64 1.11-1 [545 kB] Get:210 http://deb.debian.org/debian bullseye/main amd64 seqtk amd64 1.3-2 [29.7 kB] Get:211 http://deb.debian.org/debian bullseye/main amd64 spades amd64 3.13.1+dfsg-2+b2 [4777 kB] Get:212 http://deb.debian.org/debian bullseye/main amd64 velvet amd64 1.2.10+dfsg1-7 [678 kB] Get:213 http://deb.debian.org/debian bullseye/main amd64 skesa amd64 2.4.0-1 [705 kB] Get:214 http://deb.debian.org/debian bullseye/main amd64 trimmomatic all 0.39+dfsg-2 [758 kB] Get:215 http://deb.debian.org/debian bullseye/main amd64 shovill amd64 1.1.0-4 [12.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 157 MB in 3s (53.6 MB/s) Selecting previously unselected package perl-modules-5.32. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6672 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.32_5.32.1-4+deb11u3_all.deb ... Unpacking perl-modules-5.32 (5.32.1-4+deb11u3) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.19-2_amd64.deb ... Unpacking libgdbm6:amd64 (1.19-2) ... Selecting previously unselected package libgdbm-compat4:amd64. 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Setting up libicu67:amd64 (67.1-7) ... Setting up libaopalliance-java (20070526-6) ... Setting up libcommons-cli-java (1.4-2) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libglib2.0-0:amd64 (2.66.8-1+deb11u1) ... No schema files found: doing nothing. Setting up bwa (0.7.17-6+b1) ... Setting up libglvnd0:amd64 (1.3.2-1) ... Setting up unzip (6.0-26+deb11u1) ... Setting up perl-modules-5.32 (5.32.1-4+deb11u3) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libsqlite3-0:amd64 (3.34.1-3) ... Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libsensors-config (1:3.6.0-7) ... Setting up libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Setting up libngs-sdk2:amd64 (2.10.9-1) ... Setting up libdeflate0:amd64 (1.7-1) ... Setting up scala-library (2.11.12-4) ... Setting up libnlopt0:amd64 (2.7.0-4+b2) ... Setting up libplexus-component-annotations-java (2.1.0-1) ... Setting up libgomp1:amd64 (10.2.1-6) ... Setting up bzip2 (1.0.8-4) ... Setting up libplexus-cipher-java (1.8-2) ... Setting up libsnappy1v5:amd64 (1.1.8-1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... Setting up libgeronimo-interceptor-3.0-spec-java (1.0.1-4) ... Setting up libasound2-data (1.2.4-1.1) ... Setting up libz3-4:amd64 (4.8.10-1) ... Setting up libhat-trie0:amd64 (0.1.2-2) ... Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up libjaxen-java (1.1.6-4) ... Setting up libx11-data (2:1.7.2-1+deb11u2) ... Setting up libnspr4:amd64 (2:4.29-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libapache-pom-java (18-1) ... Setting up libavahi-common-data:amd64 (0.8-5+deb11u2) ... Setting up libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... Setting up libdbus-1-3:amd64 (1.12.28-0+deb11u1) ... Setting up libplexus-interpolation-java (1.26-1) ... Setting up libbamtools2.5.1:amd64 (2.5.1+dfsg-9) ... Setting up libpng16-16:amd64 (1.6.37-3) ... Setting up libxml-commons-resolver1.1-java (1.2-11) ... Setting up libxz-java (1.8-2) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libjbzip2-java (0.9.1-5) ... Setting up libngs-sdk-dev:amd64 (2.10.9-1) ... Setting up libpcsclite1:amd64 (1.9.1-1) ... Setting up libsensors5:amd64 (1:3.6.0-7) ... Setting up libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Setting up libactivation-java (1.2.0-2) ... Setting up libglapi-mesa:amd64 (20.3.5-1) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libvulkan1:amd64 (1.2.162.0-1) ... Setting up libjsoncpp24:amd64 (1.9.4-4) ... Setting up libgif7:amd64 (5.1.9-2) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up libjsoup-java (1.10.2-2) ... Setting up pigz (2.6-1) ... Setting up bamtools (2.5.1+dfsg-9) ... Setting up libasound2:amd64 (1.2.4-1.1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libmbedcrypto3:amd64 (2.16.9-0.1) ... Setting up libplexus-sec-dispatcher-java (1.4-4) ... Setting up libssh2-1:amd64 (1.9.0-2) ... Setting up libhttpcore-java (4.4.14-1) ... Setting up libngs-java:amd64 (2.10.9-1) ... Setting up librelaxng-datatype-java (1.0+ds1-3.1) ... Setting up openssl (1.1.1w-0+deb11u1) ... Setting up libbsd0:amd64 (0.11.3-1+deb11u1) ... Setting up velvet (1.2.10+dfsg1-7) ... Setting up libdrm-common (2.4.104-1) ... Setting up libcdi-api-java (1.2-3) ... Setting up libelf1:amd64 (0.183-1) ... Setting up libsnappy-jni (1.1.8.3-1) ... Setting up kmc (3.1.1+dfsg-3+b2) ... Setting up libssw0:amd64 (1.1-13) ... Setting up readline-common (8.1-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up libargs4j-java (2.33-1.1) ... Setting up libprocps8:amd64 (2:3.3.17-5) ... Setting up flash (1.2.11-2) ... Setting up libgdbm6:amd64 (1.19-2) ... Setting up lighter (1.1.2-5) ... Setting up libdom4j-java (2.1.3-1) ... Setting up libjaxb-api-java (2.3.1-1) ... Setting up libwagon-provider-api-java (3.3.4-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.14-3) ... Setting up libxcb-xfixes0:amd64 (1.14-3) ... Setting up java-wrappers (0.3) ... Setting up libmbedx509-0:amd64 (2.16.9-0.1) ... Setting up libstax-ex-java (1.7.8-3) ... Setting up libxcb-glx0:amd64 (1.14-3) ... Setting up libmaven-parent-java (31-2) ... Setting up libedit2:amd64 (3.1-20191231-2+b1) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libcommons-parent-java (43-1) ... Setting up libmbedtls12:amd64 (2.16.9-0.1) ... Setting up libavahi-common3:amd64 (0.8-5+deb11u2) ... Setting up libcommons-logging-java (1.2-2) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Setting up libsisu-inject-java (0.3.4-2) ... Setting up libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u11) ... Setting up libnss3:amd64 (2:3.61-1+deb11u3) ... Setting up libxcb-shm0:amd64 (1.14-3) ... Setting up libncbi-vdb2 (2.10.9+dfsg-2) ... Setting up libcommons-lang-java (2.6-9) ... Setting up libxcb-present0:amd64 (1.14-3) ... Setting up libcommons-jexl2-java (2.1.1-5) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libsisu-plexus-java (0.3.4-3) ... Setting up libmaven-resolver-java (1.4.2-3) ... Setting up libllvm11:amd64 (1:11.0.1-2) ... Setting up libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Setting up libguava-java (29.0-6) ... Setting up libxcb-sync1:amd64 (1.14-3) ... Setting up libstreambuffer-java (1.5.4-1.1) ... Setting up libgdbm-compat4:amd64 (1.19-2) ... Setting up ucf (3.0043) ... Setting up libperl5.32:amd64 (5.32.1-4+deb11u3) ... Setting up libcommons-lang3-java (3.11-1) ... Setting up libxcb-dri2-0:amd64 (1.14-3) ... Setting up librngom-java (2.3.0.1-10) ... Setting up libdrm2:amd64 (2.4.104-1) ... Setting up procps (2:3.3.17-5) ... Setting up libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Setting up libharfbuzz0b:amd64 (2.7.4-1) ... Setting up libsnappy-java (1.1.8.3-1) ... Setting up libxsom-java (2.3.0.1-10) ... Setting up libcommons-codec-java (1.15-1) ... Setting up libavahi-client3:amd64 (0.8-5+deb11u2) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up libdrm-amdgpu1:amd64 (2.4.104-1) ... Setting up libxcb-dri3-0:amd64 (1.14-3) ... Setting up libx11-xcb1:amd64 (2:1.7.2-1+deb11u2) ... Setting up libhts3:amd64 (1.11-4) ... Setting up libdrm-nouveau2:amd64 (2.4.104-1) ... Setting up libxdamage1:amd64 (1:1.1.5-2) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libcommons-compress-java (1.20-1) ... Setting up libcommons-io-java (2.8.0-1) ... Setting up libdrm-radeon1:amd64 (2.4.104-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up libdrm-intel1:amd64 (2.4.104-1) ... Setting up libgl1-mesa-dri:amd64 (20.3.5-1) ... Setting up libxext6:amd64 (2:1.3.3-1.1) ... Setting up skesa (2.4.0-1) ... Setting up libguice-java (4.2.3-2) ... Setting up samtools (1.11-1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up perl (5.32.1-4+deb11u3) ... Setting up libxfixes3:amd64 (1:5.0.3-2) ... Setting up libcups2:amd64 (2.3.3op2-3+deb11u6) ... Setting up libhttpclient-java (4.5.13-2) ... Setting up libwagon-http-java (3.3.4-1) ... Setting up libmaven-shared-utils-java (3.3.0-1+deb11u1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up libfastinfoset-java (1.2.12-3) ... Setting up python3.9 (3.9.2-1) ... Setting up libplexus-io-java (3.2.0-1.1) ... Setting up libglx-mesa0:amd64 (20.3.5-1) ... Setting up libxi6:amd64 (2:1.7.10-1) ... Setting up libglx0:amd64 (1.3.2-1) ... Setting up libmaven3-core-java (3.6.3-5) ... Setting up libmaven-shared-io-java (3.0.0-3) ... Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up python3 (3.9.2-3) ... Setting up samclip (0.4.0-2) ... Setting up libgl1:amd64 (1.3.2-1) ... Setting up libmaven-file-management-java (3.0.0-1) ... Setting up libplexus-archiver-java (3.6.0-2) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up python3-joblib (0.17.0-4+deb11u1) ... Setting up python3-all (3.9.2-3) ... Setting up python3-yaml (5.3.1-5) ... Setting up megahit (1.2.9-2) ... Setting up spades (3.13.1+dfsg-2+b2) ... Setting up default-jre-headless (2:1.11-72) ... Setting up openjdk-11-jre-headless:amd64 (11.0.22+7-1~deb11u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up openjdk-11-jre:amd64 (11.0.22+7-1~deb11u1) ... Setting up default-jre (2:1.11-72) ... Setting up ant (1.10.9-4) ... Setting up ca-certificates-java (20190909+deb11u1) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:emSign_Root_CA_-_G1.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GTS_Root_R4.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R1.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DST_Root_CA_X3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Setting up trimmomatic (0.39+dfsg-2) ... Setting up ant-optional (1.10.9-4) ... Setting up libistack-commons-java (3.0.6-5) ... Setting up libcodemodel-java (2.6+jaxb2.3.0.1-10) ... Setting up libtxw2-java (2.3.0.1-10) ... Setting up libjaxb-java (2.3.0.1-10) ... Setting up libhtsjdk-java (2.23.0+dfsg-2) ... Setting up pilon (1.23+dfsg-2) ... Setting up shovill (1.1.0-4) ... Processing triggers for libc-bin (2.31-13+deb11u8) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. 0m52.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-get', '-y', 'install', 'shovill'] 0m52.5s INFO: Running scripts post_install 0m52.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_install_exceptions'] 0m52.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_install_exceptions'] 0m52.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu'] 0m53.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu'] 0m53.5s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpg85mmkgu to testing 0m53.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m53.5s INFO: Running scripts pre_distupgrade 0m53.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m53.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m53.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_distupgrade_exceptions'] 0m53.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_distupgrade_exceptions'] 0m53.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m53.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m53.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m53.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m53.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m53.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m53.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-get', 'update'] 0m57.5s DUMP: Get:1 http://deb.debian.org/debian bookworm InRelease [151 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 Packages [8786 kB] Get:3 http://deb.debian.org/debian bookworm/main Translation-en [6109 kB] Fetched 15.0 MB in 3s (4794 kB/s) Reading package lists... 0m57.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-get', 'update'] 0m57.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-get', '-yf', 'dist-upgrade'] 1m56.5s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: ant ant-optional libactivation-java libaopalliance-java libargs4j-java libatinject-jsr330-api-java libbamtools2.5.1 libcdi-api-java libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-io-java libcommons-lang3-java libdom4j-java libdtd-parser-java liberror-prone-java libfastinfoset-java libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libguava-java libguice-java libhat-trie0 libhttpclient-java libhttpcore-java libicu67 libistack-commons-java libjaxb-api-java libjaxb-java libjaxen-java libjsoncpp24 libjsoup-java libjsr305-java libldap-2.4-2 libllvm11 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec3 libngs-sdk-dev libngs-sdk2 libperl5.32 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libprocps8 libpython3.9-minimal libpython3.9-stdlib librelaxng-datatype-java librngom-java libsisu-inject-java libsisu-plexus-java libslf4j-java libstax-ex-java libstreambuffer-java libtxw2-java libvulkan1 libwagon-http-java libwagon-provider-api-java libxml-commons-resolver1.1-java libxsom-java openjdk-11-jre openjdk-11-jre-headless perl-modules-5.32 python3.9 python3.9-minimal ucf Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libncbi-vdb2 libsemanage1 The following NEW packages will be installed: adwaita-icon-theme at-spi2-common fontconfig gcc-12-base gtk-update-icon-cache hicolor-icon-theme libatk1.0-0 libbamtools2.5.2 libboost-chrono1.74.0 libboost-iostreams1.74.0 libboost-program-options1.74.0 libboost-regex1.74.0 libboost-timer1.74.0 libcairo2 libcap2 libdatrie1 liberror-prone-java libffi8 libfile-find-rule-perl libfribidi0 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgtk2.0-0 libgtk2.0-common libhtscodecs2 libicu72 libjbig0 libjsoncpp25 libldap-2.5-0 liblerc4 libllvm15 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmjson-java libncbi-ngs3 libncbi-vdb3 libngs-c++3 libngs-jni libnumber-compare-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libperl5.36 libpixman-1-0 libproc2-0 libpython3.11-minimal libpython3.11-stdlib librhino-java libsemanage2 libsepol2 libssl3 libtext-glob-perl libthai-data libthai0 libtiff6 libwebp7 libxcb-randr0 libxcb-render0 libxcomposite1 libxcursor1 libxinerama1 libxrandr2 ncbi-vdb-data openjdk-17-jre openjdk-17-jre-headless perl-modules-5.36 python3.11 python3.11-minimal shared-mime-info usrmerge util-linux-extra The following packages will be upgraded: adduser ant ant-optional apt bamtools base-files base-passwd bash bsdutils bwa bzip2 ca-certificates ca-certificates-java coreutils dash debconf debian-archive-keyring debianutils default-jre default-jre-headless diffutils dpkg e2fsprogs findutils fontconfig-config fonts-dejavu-core gpgv grep gzip hostname init-system-helpers java-common java-wrappers kmc libacl1 libaopalliance-java libapache-pom-java libapt-pkg6.0 libargs4j-java libasound2 libasound2-data libattr1 libaudit-common libaudit1 libavahi-client3 libavahi-common-data libavahi-common3 libblkid1 libbrotli1 libbsd0 libbz2-1.0 libc-bin libc6 libcap-ng0 libcodemodel-java libcom-err2 libcommons-cli-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java libcommons-logging-java libcommons-parent-java libcrypt1 libcups2 libcurl3-gnutls libdb5.3 libdbus-1-3 libdebconfclient0 libdeflate0 libdom4j-java libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1 libext2fs2 libfontconfig1 libfreetype6 libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libguava-java libharfbuzz0b libhogweed6 libhts3 libhtsjdk-java libhttpclient-java libhttpcore-java libidn2-0 libjaxb-java libjbzip2-java libjpeg62-turbo libjsoup-java libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 liblz4-1 liblzma5 libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmd0 libmount1 libncurses6 libncursesw6 libnettle8 libnghttp2-14 libngs-java libnlopt0 libnspr4 libnss3 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpciaccess0 libpcre2-8-0 libpcre3 libpcsclite1 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libpng16-16 libpsl5 libpython3-stdlib libreadline8 librngom-java libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsensors-config libsensors5 libslf4j-java libsmartcols1 libsnappy1v5 libsqlite3-0 libss2 libssh2-1 libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtirpc-common libtirpc3 libtxw2-java libudev1 libunistring2 libuuid1 libvulkan1 libwagon-http-java libwagon-provider-api-java libx11-6 libx11-data libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdamage1 libxext6 libxfixes3 libxi6 libxml2 libxrender1 libxsom-java libxtst6 libxxhash0 libxz-java libyaml-0-2 libz3-4 libzstd1 lighter login logsave lsb-base mawk media-types megahit mount ncurses-base ncurses-bin openssl passwd perl perl-base pilon procps python3 python3-all python3-distutils python3-joblib python3-lib2to3 python3-minimal python3-pkg-resources python3-yaml readline-common samclip samtools scala-library sed sensible-utils seqtk shovill skesa spades sysvinit-utils tar tzdata ucf unzip util-linux velvet x11-common zlib1g 249 upgraded, 72 newly installed, 2 to remove and 0 not upgraded. Need to get 220 MB of archives. After this operation, 515 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 base-files amd64 12.4+deb12u5 [70.8 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libc6 amd64 2.36-9+deb12u4 [2748 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libc-bin amd64 2.36-9+deb12u4 [606 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 gcc-12-base amd64 12.2.0-14 [37.5 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 libgcc-s1 amd64 12.2.0-14 [49.9 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 libblkid1 amd64 2.38.1-5+b1 [147 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libpcre2-8-0 amd64 10.42-1 [261 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libselinux1 amd64 3.4-1+b6 [73.7 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libmount1 amd64 2.38.1-5+b1 [166 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libsmartcols1 amd64 2.38.1-5+b1 [107 kB] Get:11 http://deb.debian.org/debian bookworm/main amd64 libaudit-common all 1:3.0.9-1 [10.4 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libcap-ng0 amd64 0.8.3-1+b3 [17.1 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libaudit1 amd64 1:3.0.9-1 [46.8 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 login amd64 1:4.13+dfsg1-1+b1 [616 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 util-linux-extra amd64 2.38.1-5+b1 [111 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 util-linux amd64 2.38.1-5+b1 [1177 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 liblzma5 amd64 5.4.1-0.2 [205 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libzstd1 amd64 1.5.4+dfsg2-5 [290 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 tar amd64 1.34+dfsg-1.2+deb12u1 [836 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 dpkg amd64 1.21.22 [1567 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 sysvinit-utils amd64 3.06-4 [31.0 kB] Get:22 http://deb.debian.org/debian bookworm/main amd64 lsb-base all 11.6 [4584 B] Get:23 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 debianutils amd64 5.7-0.5~deb12u1 [103 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 bash amd64 5.2.15-2+b2 [1491 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 bsdutils amd64 1:2.38.1-5+b1 [94.4 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libgmp10 amd64 2:6.2.1+dfsg1-1.1 [563 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 coreutils amd64 9.1-1 [2897 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 dash amd64 0.5.12-2 [91.8 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 diffutils amd64 1:3.8-4 [352 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 findutils amd64 4.9.0-4 [636 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 grep amd64 3.8-5 [421 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 gzip amd64 1.12-1 [140 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 hostname amd64 3.23+nmu1 [10.5 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 libncurses6 amd64 6.4-4 [103 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-4 [134 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 libtinfo6 amd64 6.4-4 [331 kB] Get:38 http://deb.debian.org/debian bookworm/main amd64 ncurses-bin amd64 6.4-4 [421 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 perl-modules-5.36 all 5.36.0-7+deb12u1 [2815 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 libgdbm6 amd64 1.23-3 [72.2 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 libperl5.36 amd64 5.36.0-7+deb12u1 [4218 kB] Get:42 http://deb.debian.org/debian bookworm/main amd64 perl amd64 5.36.0-7+deb12u1 [239 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 perl-base amd64 5.36.0-7+deb12u1 [1608 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 bzip2 amd64 1.0.8-5+b1 [49.8 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 libbz2-1.0 amd64 1.0.8-5+b1 [47.3 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 debconf all 1.5.82 [121 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 libpam0g amd64 1.5.2-6+deb12u1 [92.0 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 libcrypt1 amd64 1:4.4.33-2 [89.5 kB] Get:49 http://deb.debian.org/debian bookworm/main amd64 libdb5.3 amd64 5.3.28+dfsg2-1 [697 kB] Get:50 http://deb.debian.org/debian bookworm/main amd64 libgdbm-compat4 amd64 1.23-3 [48.2 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 zlib1g amd64 1:1.2.13.dfsg-1 [86.7 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 sed amd64 4.9-1 [329 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 libgpg-error0 amd64 1.46-1 [76.9 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 libgcrypt20 amd64 1.10.1-3 [696 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 libstdc++6 amd64 12.2.0-14 [614 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 liblz4-1 amd64 1.9.4-1 [62.9 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 libcap2 amd64 1:2.66-4 [27.0 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 libsystemd0 amd64 252.22-1~deb12u1 [331 kB] Get:59 http://deb.debian.org/debian bookworm/main amd64 libudev1 amd64 252.22-1~deb12u1 [108 kB] Get:60 http://deb.debian.org/debian bookworm/main amd64 libxxhash0 amd64 0.8.1-1 [27.6 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libapt-pkg6.0 amd64 2.6.1 [907 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 libnettle8 amd64 3.8.1-2 [288 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libhogweed6 amd64 3.8.1-2 [328 kB] Get:64 http://deb.debian.org/debian bookworm/main amd64 libunistring2 amd64 1.0-2 [437 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 libidn2-0 amd64 2.3.3-1+b1 [124 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libffi8 amd64 3.4.4-1 [22.9 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 libp11-kit0 amd64 0.24.1-2 [345 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 libtasn1-6 amd64 4.19.0-2 [56.6 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 libgnutls30 amd64 3.7.9-2+deb12u2 [1404 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 libsemanage-common all 3.4-1 [21.6 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 libsepol2 amd64 3.4-2.1 [276 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 libsemanage2 amd64 3.4-1+b5 [89.9 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 passwd amd64 1:4.13+dfsg1-1+b1 [972 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 libpam-modules-bin amd64 1.5.2-6+deb12u1 [75.6 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 libpam-modules amd64 1.5.2-6+deb12u1 [291 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 adduser all 3.134 [183 kB] Get:77 http://deb.debian.org/debian bookworm/main amd64 gpgv amd64 2.2.40-1.1 [648 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 debian-archive-keyring all 2023.3+deb12u1 [161 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 libseccomp2 amd64 2.5.4-1+b3 [46.6 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 apt amd64 2.6.1 [1373 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 libdebconfclient0 amd64 0.270 [9900 B] Get:82 http://deb.debian.org/debian bookworm/main amd64 base-passwd amd64 3.6.1 [60.0 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:84 http://deb.debian.org/debian bookworm/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:85 http://deb.debian.org/debian bookworm/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 usrmerge all 37~deb12u1 [13.3 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 init-system-helpers all 1.65.2 [49.8 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 ncurses-base all 6.4-4 [261 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 libboost-iostreams1.74.0 amd64 1.74.0+ds1-21 [240 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 libboost-program-options1.74.0 amd64 1.74.0+ds1-21 [329 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 libboost-regex1.74.0 amd64 1.74.0+ds1-21 [487 kB] Get:93 http://deb.debian.org/debian bookworm/main amd64 libboost-chrono1.74.0 amd64 1.74.0+ds1-21 [228 kB] Get:94 http://deb.debian.org/debian bookworm/main amd64 libboost-timer1.74.0 amd64 1.74.0+ds1-21 [226 kB] Get:95 http://deb.debian.org/debian bookworm/main amd64 libmbedcrypto7 amd64 2.28.3-1 [277 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 libmbedx509-1 amd64 2.28.3-1 [128 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 libmbedtls14 amd64 2.28.3-1 [163 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 skesa amd64 2.4.0-6+b1 [506 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 ncbi-vdb-data all 3.0.2+dfsg-2 [73.3 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 libncbi-vdb3 amd64 3.0.2+dfsg-2 [1050 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 libngs-c++3 amd64 3.0.3+dfsg-6~deb12u1 [128 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 logsave amd64 1.47.0-2 [19.6 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 libext2fs2 amd64 1.47.0-2 [205 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 e2fsprogs amd64 1.47.0-2 [571 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 mount amd64 2.38.1-5+b1 [134 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.11-1~deb12u2 [2019 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:109 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get:110 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get:111 http://deb.debian.org/debian bookworm/main amd64 python3-yaml amd64 6.0-3+b2 [119 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get:114 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get:117 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-2 [837 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u1 [134 kB] Get:122 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u1 [332 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u1 [78.9 kB] Get:124 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u1 [32.4 kB] Get:125 http://deb.debian.org/debian bookworm/main amd64 libcom-err2 amd64 1.47.0-2 [19.8 kB] Get:126 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:127 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 libuuid1 amd64 2.38.1-5+b1 [28.8 kB] Get:129 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get:130 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get:131 http://deb.debian.org/debian bookworm/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:132 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get:133 http://deb.debian.org/debian bookworm/main amd64 libpam-runtime all 1.5.2-6+deb12u1 [161 kB] Get:134 http://deb.debian.org/debian bookworm/main amd64 libacl1 amd64 2.3.1-3 [31.5 kB] Get:135 http://deb.debian.org/debian bookworm/main amd64 libattr1 amd64 1:2.5.1-4 [22.2 kB] Get:136 http://deb.debian.org/debian bookworm/main amd64 libmd0 amd64 1.0.4-2 [29.5 kB] Get:137 http://deb.debian.org/debian bookworm/main amd64 libpcre3 amd64 2:8.39-15 [341 kB] Get:138 http://deb.debian.org/debian bookworm/main amd64 mawk amd64 1.3.4.20200120-3.1 [119 kB] Get:139 http://deb.debian.org/debian bookworm/main amd64 tzdata all 2024a-0+deb12u1 [297 kB] Get:140 http://deb.debian.org/debian bookworm/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB] Get:141 http://deb.debian.org/debian bookworm/main amd64 procps amd64 2:4.0.2-3 [709 kB] Get:142 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get:143 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.11-1~deb12u2 [1419 kB] Get:144 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get:145 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:146 http://deb.debian.org/debian bookworm/main amd64 hicolor-icon-theme all 0.17-2 [11.4 kB] Get:147 http://deb.debian.org/debian bookworm/main amd64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-1 [306 kB] Get:148 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB] Get:149 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u1 [687 kB] Get:150 http://deb.debian.org/debian bookworm/main amd64 shared-mime-info amd64 2.2-1 [729 kB] Get:151 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get:152 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get:153 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get:154 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get:155 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get:156 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.2+deb12u1 [286 kB] Get:157 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-6+deb12u1 [316 kB] Get:158 http://deb.debian.org/debian bookworm/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.10+dfsg-1+b1 [139 kB] Get:159 http://deb.debian.org/debian bookworm/main amd64 gtk-update-icon-cache amd64 3.24.38-2~deb12u1 [44.0 kB] Get:160 http://deb.debian.org/debian bookworm/main amd64 adwaita-icon-theme all 43-1 [5124 kB] Get:161 http://deb.debian.org/debian bookworm/main amd64 ant-optional all 1.10.13-1 [449 kB] Get:162 http://deb.debian.org/debian bookworm/main amd64 ca-certificates-java all 20230710~deb12u1 [11.9 kB] Get:163 http://deb.debian.org/debian bookworm/main amd64 java-common all 0.74 [6388 B] Get:164 http://deb.debian.org/debian bookworm/main amd64 libavahi-client3 amd64 0.8-10 [45.5 kB] Get:165 http://deb.debian.org/debian bookworm/main amd64 libavahi-common3 amd64 0.8-10 [41.6 kB] Get:166 http://deb.debian.org/debian bookworm/main amd64 libavahi-common-data amd64 0.8-10 [107 kB] Get:167 http://deb.debian.org/debian bookworm/main amd64 libdbus-1-3 amd64 1.14.10-1~deb12u1 [201 kB] Get:168 http://deb.debian.org/debian bookworm/main amd64 libcups2 amd64 2.4.2-3+deb12u5 [245 kB] Get:169 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get:170 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get:171 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get:172 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:173 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5 [399 kB] Get:174 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get:175 http://deb.debian.org/debian bookworm/main amd64 libnspr4 amd64 2:4.35-1 [113 kB] Get:176 http://deb.debian.org/debian bookworm/main amd64 libnss3 amd64 2:3.87.1-1 [1331 kB] Get:177 http://deb.debian.org/debian bookworm/main amd64 libasound2 amd64 1.2.8-1+b1 [362 kB] Get:178 http://deb.debian.org/debian bookworm/main amd64 libasound2-data all 1.2.8-1 [20.5 kB] Get:179 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get:180 http://deb.debian.org/debian bookworm/main amd64 libpcsclite1 amd64 1.9.9-2 [49.7 kB] Get:181 http://deb.debian.org/debian bookworm/main amd64 openjdk-17-jre-headless amd64 17.0.10+7-1~deb12u1 [43.7 MB] Get:182 http://deb.debian.org/debian bookworm/main amd64 libgtk2.0-common all 2.24.33-2 [2700 kB] Get:183 http://deb.debian.org/debian bookworm/main amd64 at-spi2-common all 2.46.0-5 [162 kB] Get:184 http://deb.debian.org/debian bookworm/main amd64 libatk1.0-0 amd64 2.46.0-5 [49.6 kB] Get:185 http://deb.debian.org/debian bookworm/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB] Get:186 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2+deb12u2 [292 kB] Get:187 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2+deb12u2 [760 kB] Get:188 http://deb.debian.org/debian bookworm/main amd64 libx11-xcb1 amd64 2:1.8.4-2+deb12u2 [192 kB] Get:189 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:190 http://deb.debian.org/debian bookworm/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get:191 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get:192 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:193 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:194 http://deb.debian.org/debian bookworm/main amd64 libcairo2 amd64 1.16.0-7 [575 kB] Get:195 http://deb.debian.org/debian bookworm/main amd64 fontconfig amd64 2.14.1-4 [449 kB] Get:196 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get:197 http://deb.debian.org/debian bookworm/main amd64 libthai-data all 0.1.29-1 [176 kB] Get:198 http://deb.debian.org/debian bookworm/main amd64 libdatrie1 amd64 0.2.13-2+b1 [43.3 kB] Get:199 http://deb.debian.org/debian bookworm/main amd64 libthai0 amd64 0.1.29-1 [57.5 kB] Get:200 http://deb.debian.org/debian bookworm/main amd64 libpango-1.0-0 amd64 1.50.12+ds-1 [212 kB] Get:201 http://deb.debian.org/debian bookworm/main amd64 libpangoft2-1.0-0 amd64 1.50.12+ds-1 [47.4 kB] Get:202 http://deb.debian.org/debian bookworm/main amd64 libpangocairo-1.0-0 amd64 1.50.12+ds-1 [34.2 kB] Get:203 http://deb.debian.org/debian bookworm/main amd64 libxcomposite1 amd64 1:0.4.5-1 [16.6 kB] Get:204 http://deb.debian.org/debian bookworm/main amd64 libxfixes3 amd64 1:6.0.0-2 [22.7 kB] Get:205 http://deb.debian.org/debian bookworm/main amd64 libxcursor1 amd64 1:1.2.1-1 [40.9 kB] Get:206 http://deb.debian.org/debian bookworm/main amd64 libxdamage1 amd64 1:1.1.6-1 [15.1 kB] Get:207 http://deb.debian.org/debian bookworm/main amd64 libxi6 amd64 2:1.8-1+b1 [84.2 kB] Get:208 http://deb.debian.org/debian bookworm/main amd64 libxinerama1 amd64 2:1.1.4-3 [17.8 kB] Get:209 http://deb.debian.org/debian bookworm/main amd64 libxrandr2 amd64 2:1.5.2-2+b1 [39.2 kB] Get:210 http://deb.debian.org/debian bookworm/main amd64 libgtk2.0-0 amd64 2.24.33-2 [1855 kB] Get:211 http://deb.debian.org/debian bookworm/main amd64 libdrm-common all 2.4.114-1 [7112 B] Get:212 http://deb.debian.org/debian bookworm/main amd64 libdrm2 amd64 2.4.114-1+b1 [37.5 kB] Get:213 http://deb.debian.org/debian bookworm/main amd64 libdrm-amdgpu1 amd64 2.4.114-1+b1 [20.9 kB] Get:214 http://deb.debian.org/debian bookworm/main amd64 libpciaccess0 amd64 0.17-2 [51.4 kB] Get:215 http://deb.debian.org/debian bookworm/main amd64 libdrm-intel1 amd64 2.4.114-1+b1 [64.0 kB] Get:216 http://deb.debian.org/debian bookworm/main amd64 libdrm-nouveau2 amd64 2.4.114-1+b1 [19.1 kB] Get:217 http://deb.debian.org/debian bookworm/main amd64 libdrm-radeon1 amd64 2.4.114-1+b1 [21.8 kB] Get:218 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get:219 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get:220 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get:221 http://deb.debian.org/debian bookworm/main amd64 libz3-4 amd64 4.8.12-3.1 [7216 kB] Get:222 http://deb.debian.org/debian bookworm/main amd64 libllvm15 amd64 1:15.0.6-4+b1 [23.1 MB] Get:223 http://deb.debian.org/debian bookworm/main amd64 libsensors-config all 1:3.6.0-7.1 [14.3 kB] Get:224 http://deb.debian.org/debian bookworm/main amd64 libsensors5 amd64 1:3.6.0-7.1 [34.2 kB] Get:225 http://deb.debian.org/debian bookworm/main amd64 libxcb-dri3-0 amd64 1.15-1 [107 kB] Get:226 http://deb.debian.org/debian bookworm/main amd64 libgl1-mesa-dri amd64 22.3.6-1+deb12u1 [7239 kB] Get:227 http://deb.debian.org/debian bookworm/main amd64 libglx-mesa0 amd64 22.3.6-1+deb12u1 [147 kB] Get:228 http://deb.debian.org/debian bookworm/main amd64 libglapi-mesa amd64 22.3.6-1+deb12u1 [35.7 kB] Get:229 http://deb.debian.org/debian bookworm/main amd64 libxcb-dri2-0 amd64 1.15-1 [107 kB] Get:230 http://deb.debian.org/debian bookworm/main amd64 libxcb-glx0 amd64 1.15-1 [122 kB] Get:231 http://deb.debian.org/debian bookworm/main amd64 libxcb-present0 amd64 1.15-1 [105 kB] Get:232 http://deb.debian.org/debian bookworm/main amd64 libxcb-randr0 amd64 1.15-1 [117 kB] Get:233 http://deb.debian.org/debian bookworm/main amd64 libxcb-sync1 amd64 1.15-1 [109 kB] Get:234 http://deb.debian.org/debian bookworm/main amd64 libxcb-xfixes0 amd64 1.15-1 [109 kB] Get:235 http://deb.debian.org/debian bookworm/main amd64 libgl1 amd64 1.6.0-1 [88.4 kB] Get:236 http://deb.debian.org/debian bookworm/main amd64 libglx0 amd64 1.6.0-1 [34.4 kB] Get:237 http://deb.debian.org/debian bookworm/main amd64 libglvnd0 amd64 1.6.0-1 [51.8 kB] Get:238 http://deb.debian.org/debian bookworm/main amd64 libgif7 amd64 5.2.1-2.5 [46.9 kB] Get:239 http://deb.debian.org/debian bookworm/main amd64 libxtst6 amd64 2:1.2.3-1.1 [28.0 kB] Get:240 http://deb.debian.org/debian bookworm/main amd64 openjdk-17-jre amd64 17.0.10+7-1~deb12u1 [184 kB] Get:241 http://deb.debian.org/debian bookworm/main amd64 default-jre amd64 2:1.17-74 [1056 B] Get:242 http://deb.debian.org/debian bookworm/main amd64 default-jre-headless amd64 2:1.17-74 [2936 B] Get:243 http://deb.debian.org/debian bookworm/main amd64 ant all 1.10.13-1 [2161 kB] Get:244 http://deb.debian.org/debian bookworm/main amd64 libbamtools2.5.2 amd64 2.5.2+dfsg-4 [149 kB] Get:245 http://deb.debian.org/debian bookworm/main amd64 libjsoncpp25 amd64 1.9.5-4 [78.6 kB] Get:246 http://deb.debian.org/debian bookworm/main amd64 bamtools amd64 2.5.2+dfsg-4 [193 kB] Get:247 http://deb.debian.org/debian bookworm/main amd64 bwa amd64 0.7.17-7+b2 [212 kB] Get:248 http://deb.debian.org/debian bookworm/main amd64 unzip amd64 6.0-28 [166 kB] Get:249 http://deb.debian.org/debian bookworm/main amd64 java-wrappers all 0.4 [8916 B] Get:250 http://deb.debian.org/debian bookworm/main amd64 kmc amd64 3.2.1+dfsg-1+b2 [997 kB] Get:251 http://deb.debian.org/debian bookworm/main amd64 libaopalliance-java all 20070526-7 [8572 B] Get:252 http://deb.debian.org/debian bookworm/main amd64 libapache-pom-java all 29-2 [5276 B] Get:253 http://deb.debian.org/debian bookworm/main amd64 libargs4j-java all 2.33-2 [138 kB] Get:254 http://deb.debian.org/debian bookworm/main amd64 libcodemodel-java all 2.6+jaxb2.3.0.1-10.1 [164 kB] Get:255 http://deb.debian.org/debian bookworm/main amd64 libcommons-cli-java all 1.5.0-1 [60.0 kB] Get:256 http://deb.debian.org/debian bookworm/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get:257 http://deb.debian.org/debian bookworm/main amd64 libcommons-compress-java all 1.22-1 [615 kB] Get:258 http://deb.debian.org/debian bookworm/main amd64 libcommons-io-java all 2.11.0-2 [319 kB] Get:259 http://deb.debian.org/debian bookworm/main amd64 libcommons-logging-java all 1.2-3 [62.4 kB] Get:260 http://deb.debian.org/debian bookworm/main amd64 libcommons-jexl2-java all 2.1.1-6 [256 kB] Get:261 http://deb.debian.org/debian bookworm/main amd64 libcommons-lang-java all 2.6-10 [273 kB] Get:262 http://deb.debian.org/debian bookworm/main amd64 libcommons-lang3-java all 3.12.0-2 [561 kB] Get:263 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get:264 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get:265 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get:266 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1+deb12u1 [72.4 kB] Get:267 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get:268 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:269 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.88.1-10+deb12u5 [385 kB] Get:270 http://deb.debian.org/debian bookworm/main amd64 libdom4j-java all 2.1.3-2 [310 kB] Get:271 http://deb.debian.org/debian bookworm/main amd64 libguava-java all 31.1-1 [2613 kB] Get:272 http://deb.debian.org/debian bookworm/main amd64 liberror-prone-java all 2.18.0-1 [22.5 kB] Get:273 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-14 [116 kB] Get:274 http://deb.debian.org/debian bookworm/main amd64 samtools amd64 1.16.1-1 [607 kB] Get:275 http://deb.debian.org/debian bookworm/main amd64 libhtscodecs2 amd64 1.3.0-4 [87.5 kB] Get:276 http://deb.debian.org/debian bookworm/main amd64 libhts3 amd64 1.16+ds-3 [430 kB] Get:277 http://deb.debian.org/debian bookworm/main amd64 libmjson-java all 1.4.0-3 [60.4 kB] Get:278 http://deb.debian.org/debian bookworm/main amd64 libncbi-ngs3 amd64 3.0.3+dfsg-6~deb12u1 [154 kB] Get:279 http://deb.debian.org/debian bookworm/main amd64 libngs-jni amd64 3.0.3+dfsg-6~deb12u1 [23.5 kB] Get:280 http://deb.debian.org/debian bookworm/main amd64 libngs-java amd64 3.0.3+dfsg-6~deb12u1 [110 kB] Get:281 http://deb.debian.org/debian bookworm/main amd64 librhino-java all 1.7.14-2.1 [1357 kB] Get:282 http://deb.debian.org/debian bookworm/main amd64 libhtsjdk-java all 3.0.4+dfsg-2 [1813 kB] Get:283 http://deb.debian.org/debian bookworm/main amd64 libhttpcore-java all 4.4.16-1 [636 kB] Get:284 http://deb.debian.org/debian bookworm/main amd64 libhttpclient-java all 4.5.14-1 [1247 kB] Get:285 http://deb.debian.org/debian bookworm/main amd64 librngom-java all 2.3.0.1-10.1 [290 kB] Get:286 http://deb.debian.org/debian bookworm/main amd64 libxsom-java all 2.3.0.1-10.1 [400 kB] Get:287 http://deb.debian.org/debian bookworm/main amd64 libtxw2-java all 2.3.0.1-10.1 [134 kB] Get:288 http://deb.debian.org/debian bookworm/main amd64 libjaxb-java all 2.3.0.1-10.1 [1973 kB] Get:289 http://deb.debian.org/debian bookworm/main amd64 libjbzip2-java all 0.9.1-8 [42.7 kB] Get:290 http://deb.debian.org/debian bookworm/main amd64 libjsoup-java all 1.15.3-1 [431 kB] Get:291 http://deb.debian.org/debian bookworm/main amd64 libmaven-parent-java all 35-1 [6140 B] Get:292 http://deb.debian.org/debian bookworm/main amd64 libplexus-utils2-java all 3.4.2-1 [258 kB] Get:293 http://deb.debian.org/debian bookworm/main amd64 libwagon-provider-api-java all 3.5.3-1 [48.2 kB] Get:294 http://deb.debian.org/debian bookworm/main amd64 libmaven-resolver-java all 1.6.3-1 [548 kB] Get:295 http://deb.debian.org/debian bookworm/main amd64 libmaven-shared-utils-java all 3.3.4-1 [138 kB] Get:296 http://deb.debian.org/debian bookworm/main amd64 libplexus-cipher-java all 2.0-1 [14.9 kB] Get:297 http://deb.debian.org/debian bookworm/main amd64 libplexus-classworlds-java all 2.7.0-1 [50.6 kB] Get:298 http://deb.debian.org/debian bookworm/main amd64 libplexus-component-annotations-java all 2.1.1-1 [7660 B] Get:299 http://deb.debian.org/debian bookworm/main amd64 libplexus-sec-dispatcher-java all 2.0-3 [28.3 kB] Get:300 http://deb.debian.org/debian bookworm/main amd64 libslf4j-java all 1.7.32-1 [144 kB] Get:301 http://deb.debian.org/debian bookworm/main amd64 libmaven3-core-java all 3.8.7-1 [1572 kB] Get:302 http://deb.debian.org/debian bookworm/main amd64 libmaven-shared-io-java all 3.0.0-4 [33.2 kB] Get:303 http://deb.debian.org/debian bookworm/main amd64 libnlopt0 amd64 2.7.1-5 [174 kB] Get:304 http://deb.debian.org/debian bookworm/main amd64 libplexus-io-java all 3.3.1-2 [65.3 kB] Get:305 http://deb.debian.org/debian bookworm/main amd64 libxz-java all 1.9-1 [143 kB] Get:306 http://deb.debian.org/debian bookworm/main amd64 libplexus-archiver-java all 4.6.1-1 [187 kB] Get:307 http://deb.debian.org/debian bookworm/main amd64 libsnappy1v5 amd64 1.1.9-3 [26.0 kB] Get:308 http://deb.debian.org/debian bookworm/main amd64 libss2 amd64 1.47.0-2 [24.5 kB] Get:309 http://deb.debian.org/debian bookworm/main amd64 libvulkan1 amd64 1.3.239.0-1 [116 kB] Get:310 http://deb.debian.org/debian bookworm/main amd64 libwagon-http-java all 3.5.3-1 [49.5 kB] Get:311 http://deb.debian.org/debian bookworm/main amd64 lighter amd64 1.1.2-7 [47.4 kB] Get:312 http://deb.debian.org/debian bookworm/main amd64 megahit amd64 1.2.9-4 [1144 kB] Get:313 http://deb.debian.org/debian bookworm/main amd64 scala-library all 2.11.12-5 [9588 kB] Get:314 http://deb.debian.org/debian bookworm/main amd64 pilon all 1.24-2 [497 kB] Get:315 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get:316 http://deb.debian.org/debian bookworm/main amd64 python3-joblib all 1.2.0-4 [211 kB] Get:317 http://deb.debian.org/debian bookworm/main amd64 samclip all 0.4.0-4 [20.1 kB] Get:318 http://deb.debian.org/debian bookworm/main amd64 seqtk amd64 1.3-4 [30.6 kB] Get:319 http://deb.debian.org/debian bookworm/main amd64 spades amd64 3.15.5+dfsg-2 [8663 kB] Get:320 http://deb.debian.org/debian bookworm/main amd64 velvet amd64 1.2.10+dfsg1-8 [674 kB] Get:321 http://deb.debian.org/debian bookworm/main amd64 shovill amd64 1.1.0-9 [13.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 220 MB in 3s (73.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14385 files and directories currently installed.) Preparing to unpack .../base-files_12.4+deb12u5_amd64.deb ... Unpacking base-files (12.4+deb12u5) over (11.1+deb11u9) ... Setting up base-files (12.4+deb12u5) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14378 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.38.1-5+b1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.38.1-5+b1) over (2.36.1-8+deb11u1) ... Setting up libsmartcols1:amd64 (2.38.1-5+b1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14382 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.0.9-1_amd64.deb ... Unpacking libaudit1:amd64 (1:3.0.9-1) over (1:3.0-2) ... Setting up libaudit1:amd64 (1:3.0.9-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14382 files and directories currently installed.) Preparing to unpack .../login_1%3a4.13+dfsg1-1+b1_amd64.deb ... Unpacking login (1:4.13+dfsg1-1+b1) over (1:4.8.1-1) ... Setting up login (1:4.13+dfsg1-1+b1) ... Installing new version of config file /etc/login.defs ... (Reading database ... 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Preparing to unpack .../util-linux-extra_2.38.1-5+b1_amd64.deb ... Unpacking util-linux-extra (2.38.1-5+b1) ... Setting up util-linux-extra (2.38.1-5+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14404 files and directories currently installed.) Preparing to unpack .../liblzma5_5.4.1-0.2_amd64.deb ... Unpacking liblzma5:amd64 (5.4.1-0.2) over (5.2.5-2.1~deb11u1) ... Setting up liblzma5:amd64 (5.4.1-0.2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14404 files and directories currently installed.) Preparing to unpack .../tar_1.34+dfsg-1.2+deb12u1_amd64.deb ... Unpacking tar (1.34+dfsg-1.2+deb12u1) over (1.34+dfsg-1+deb11u1) ... Setting up tar (1.34+dfsg-1.2+deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14404 files and directories currently installed.) Preparing to unpack .../dpkg_1.21.22_amd64.deb ... Unpacking dpkg (1.21.22) over (1.20.13) ... Setting up dpkg (1.21.22) ... Installing new version of config file /etc/cron.daily/dpkg ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14406 files and directories currently installed.) Preparing to unpack .../archives/lsb-base_11.6_all.deb ... Unpacking lsb-base (11.6) over (11.1.0) ... Preparing to unpack .../sysvinit-utils_3.06-4_amd64.deb ... Unpacking sysvinit-utils (3.06-4) over (2.96-7+deb11u1) ... Setting up sysvinit-utils (3.06-4) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14408 files and directories currently installed.) Preparing to unpack .../bash_5.2.15-2+b2_amd64.deb ... Unpacking bash (5.2.15-2+b2) over (5.1-2+deb11u1) ... Setting up bash (5.2.15-2+b2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14410 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.38.1-5+b1_amd64.deb ... Unpacking bsdutils (1:2.38.1-5+b1) over (1:2.36.1-8+deb11u1) ... Setting up bsdutils (1:2.38.1-5+b1) ... (Reading database ... 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Setting up libtinfo6:amd64 (6.4-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14411 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.4-4_amd64.deb ... Unpacking ncurses-bin (6.4-4) over (6.2+20201114-2+deb11u2) ... Setting up ncurses-bin (6.4-4) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16339 files and directories currently installed.) Preparing to unpack .../libcrypt1_1%3a4.4.33-2_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.33-2) over (1:4.4.18-4) ... Setting up libcrypt1:amd64 (1:4.4.33-2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16339 files and directories currently installed.) Preparing to unpack .../archives/sed_4.9-1_amd64.deb ... Unpacking sed (4.9-1) over (4.7-1) ... Setting up sed (4.9-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16342 files and directories currently installed.) Preparing to unpack .../libstdc++6_12.2.0-14_amd64.deb ... Unpacking libstdc++6:amd64 (12.2.0-14) over (10.2.1-6) ... Setting up libstdc++6:amd64 (12.2.0-14) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16342 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.9.4-1_amd64.deb ... Unpacking liblz4-1:amd64 (1.9.4-1) over (1.9.3-2) ... Setting up liblz4-1:amd64 (1.9.4-1) ... Selecting previously unselected package libcap2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16342 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.66-4_amd64.deb ... Unpacking libcap2:amd64 (1:2.66-4) ... Setting up libcap2:amd64 (1:2.66-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16350 files and directories currently installed.) Preparing to unpack .../libsystemd0_252.22-1~deb12u1_amd64.deb ... Unpacking libsystemd0:amd64 (252.22-1~deb12u1) over (247.3-7+deb11u4) ... Setting up libsystemd0:amd64 (252.22-1~deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16351 files and directories currently installed.) Preparing to unpack .../libudev1_252.22-1~deb12u1_amd64.deb ... Unpacking libudev1:amd64 (252.22-1~deb12u1) over (247.3-7+deb11u4) ... Setting up libudev1:amd64 (252.22-1~deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16352 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.1-1_amd64.deb ... Unpacking libxxhash0:amd64 (0.8.1-1) over (0.8.0-2) ... Setting up libxxhash0:amd64 (0.8.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16352 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.6.1_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.6.1) over (2.2.4) ... Setting up libapt-pkg6.0:amd64 (2.6.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16352 files and directories currently installed.) Preparing to unpack .../libnettle8_3.8.1-2_amd64.deb ... Unpacking libnettle8:amd64 (3.8.1-2) over (3.7.3-1) ... Setting up libnettle8:amd64 (3.8.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16352 files and directories currently installed.) Preparing to unpack .../libhogweed6_3.8.1-2_amd64.deb ... Unpacking libhogweed6:amd64 (3.8.1-2) over (3.7.3-1) ... Setting up libhogweed6:amd64 (3.8.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16352 files and directories currently installed.) Preparing to unpack .../libunistring2_1.0-2_amd64.deb ... Unpacking libunistring2:amd64 (1.0-2) over (0.9.10-4) ... Setting up libunistring2:amd64 (1.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16352 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.3-1+b1_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.3-1+b1) over (2.3.0-5) ... Setting up libidn2-0:amd64 (2.3.3-1+b1) ... Selecting previously unselected package libffi8:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16354 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.4-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.4-1) ... Setting up libffi8:amd64 (3.4.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16359 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.24.1-2_amd64.deb ... Unpacking libp11-kit0:amd64 (0.24.1-2) over (0.23.22-1) ... Setting up libp11-kit0:amd64 (0.24.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16359 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.19.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.19.0-2) over (4.16.0-2+deb11u1) ... Setting up libtasn1-6:amd64 (4.19.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16359 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.9-2+deb12u2_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.9-2+deb12u2) over (3.7.1-5+deb11u4) ... Setting up libgnutls30:amd64 (3.7.9-2+deb12u2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16361 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.4-1_all.deb ... Unpacking libsemanage-common (3.4-1) over (3.1-1) ... Setting up libsemanage-common (3.4-1) ... Installing new version of config file /etc/selinux/semanage.conf ... Selecting previously unselected package libsepol2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16361 files and directories currently installed.) Preparing to unpack .../libsepol2_3.4-2.1_amd64.deb ... Unpacking libsepol2:amd64 (3.4-2.1) ... Setting up libsepol2:amd64 (3.4-2.1) ... Selecting previously unselected package libsemanage2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16365 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.4-1+b5_amd64.deb ... Unpacking libsemanage2:amd64 (3.4-1+b5) ... Setting up libsemanage2:amd64 (3.4-1+b5) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16407 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.2-6+deb12u1_amd64.deb ... Unpacking libpam-modules:amd64 (1.5.2-6+deb12u1) over (1.4.0-9+deb11u1) ... Setting up libpam-modules:amd64 (1.5.2-6+deb12u1) ... Installing new version of config file /etc/security/limits.conf ... Installing new version of config file /etc/security/sepermit.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16408 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.134_all.deb ... moving unchanged adduser.conf to adduser.conf.update-old. New dpkg-conffile will come from the package. Unpacking adduser (3.134) over (3.118+deb11u1) ... Setting up adduser (3.134) ... Installing new version of config file /etc/deluser.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16376 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.40-1.1_amd64.deb ... Unpacking gpgv (2.2.40-1.1) over (2.2.27-2+deb11u2) ... Setting up gpgv (2.2.40-1.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16376 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2023.3+deb12u1_all.deb ... Unpacking debian-archive-keyring (2023.3+deb12u1) over (2021.1.1+deb11u1) ... Setting up debian-archive-keyring (2023.3+deb12u1) ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-automatic.gpg ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16376 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.4-1+b3_amd64.deb ... Unpacking libseccomp2:amd64 (2.5.4-1+b3) over (2.5.1-1+deb11u1) ... Setting up libseccomp2:amd64 (2.5.4-1+b3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16377 files and directories currently installed.) Preparing to unpack .../archives/apt_2.6.1_amd64.deb ... Unpacking apt (2.6.1) over (2.2.4) ... Setting up apt (2.6.1) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt-compat ... Removing obsolete conffile /etc/kernel/postinst.d/apt-auto-removal ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16374 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.270_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.270) over (0.260) ... Setting up libdebconfclient0:amd64 (0.270) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16374 files and directories currently installed.) Preparing to unpack .../base-passwd_3.6.1_amd64.deb ... Unpacking base-passwd (3.6.1) over (3.5.51) ... Setting up base-passwd (3.6.1) ... Selecting previously unselected package libnumber-compare-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16374 files and directories currently installed.) Preparing to unpack .../libnumber-compare-perl_0.03-3_all.deb ... Unpacking libnumber-compare-perl (0.03-3) ... Setting up libnumber-compare-perl (0.03-3) ... Selecting previously unselected package libtext-glob-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16381 files and directories currently installed.) Preparing to unpack .../libtext-glob-perl_0.11-3_all.deb ... Unpacking libtext-glob-perl (0.11-3) ... Setting up libtext-glob-perl (0.11-3) ... Selecting previously unselected package libfile-find-rule-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16388 files and directories currently installed.) Preparing to unpack .../libfile-find-rule-perl_0.34-3_all.deb ... Unpacking libfile-find-rule-perl (0.34-3) ... Setting up perl-modules-5.36 (5.36.0-7+deb12u1) ... Setting up libgdbm6:amd64 (1.23-3) ... Setting up libgdbm-compat4:amd64 (1.23-3) ... Setting up libperl5.36:amd64 (5.36.0-7+deb12u1) ... Setting up perl (5.36.0-7+deb12u1) ... Setting up libfile-find-rule-perl (0.34-3) ... Selecting previously unselected package usrmerge. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16403 files and directories currently installed.) Preparing to unpack .../usrmerge_37~deb12u1_all.deb ... Unpacking usrmerge (37~deb12u1) ... Setting up usrmerge (37~deb12u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16410 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.65.2_all.deb ... Unpacking init-system-helpers (1.65.2) over (1.60) ... Setting up init-system-helpers (1.65.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16410 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.4-4_all.deb ... Unpacking ncurses-base (6.4-4) over (6.2+20201114-2+deb11u2) ... Setting up ncurses-base (6.4-4) ... Selecting previously unselected package libboost-iostreams1.74.0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16412 files and directories currently installed.) Preparing to unpack .../0-libboost-iostreams1.74.0_1.74.0+ds1-21_amd64.deb ... Unpacking libboost-iostreams1.74.0:amd64 (1.74.0+ds1-21) ... Selecting previously unselected package libboost-program-options1.74.0:amd64. Preparing to unpack .../1-libboost-program-options1.74.0_1.74.0+ds1-21_amd64.deb ... Unpacking libboost-program-options1.74.0:amd64 (1.74.0+ds1-21) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../2-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libboost-regex1.74.0:amd64. Preparing to unpack .../3-libboost-regex1.74.0_1.74.0+ds1-21_amd64.deb ... Unpacking libboost-regex1.74.0:amd64 (1.74.0+ds1-21) ... Selecting previously unselected package libboost-chrono1.74.0:amd64. Preparing to unpack .../4-libboost-chrono1.74.0_1.74.0+ds1-21_amd64.deb ... Unpacking libboost-chrono1.74.0:amd64 (1.74.0+ds1-21) ... Selecting previously unselected package libboost-timer1.74.0:amd64. Preparing to unpack .../5-libboost-timer1.74.0_1.74.0+ds1-21_amd64.deb ... Unpacking libboost-timer1.74.0:amd64 (1.74.0+ds1-21) ... Selecting previously unselected package libmbedcrypto7:amd64. Preparing to unpack .../6-libmbedcrypto7_2.28.3-1_amd64.deb ... Unpacking libmbedcrypto7:amd64 (2.28.3-1) ... Selecting previously unselected package libmbedx509-1:amd64. Preparing to unpack .../7-libmbedx509-1_2.28.3-1_amd64.deb ... Unpacking libmbedx509-1:amd64 (2.28.3-1) ... Selecting previously unselected package libmbedtls14:amd64. Preparing to unpack .../8-libmbedtls14_2.28.3-1_amd64.deb ... Unpacking libmbedtls14:amd64 (2.28.3-1) ... Preparing to unpack .../9-skesa_2.4.0-6+b1_amd64.deb ... Unpacking skesa (2.4.0-6+b1) over (2.4.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16477 files and directories currently installed.) Removing libncbi-vdb2 (2.10.9+dfsg-2) ... Selecting previously unselected package ncbi-vdb-data. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16425 files and directories currently installed.) Preparing to unpack .../ncbi-vdb-data_3.0.2+dfsg-2_all.deb ... Unpacking ncbi-vdb-data (3.0.2+dfsg-2) ... Selecting previously unselected package libncbi-vdb3:amd64. Preparing to unpack .../libncbi-vdb3_3.0.2+dfsg-2_amd64.deb ... Unpacking libncbi-vdb3:amd64 (3.0.2+dfsg-2) ... Selecting previously unselected package libngs-c++3:amd64. Preparing to unpack .../libngs-c++3_3.0.3+dfsg-6~deb12u1_amd64.deb ... Unpacking libngs-c++3:amd64 (3.0.3+dfsg-6~deb12u1) ... Preparing to unpack .../logsave_1.47.0-2_amd64.deb ... Unpacking logsave (1.47.0-2) over (1.46.2-2) ... Preparing to unpack .../libext2fs2_1.47.0-2_amd64.deb ... Unpacking libext2fs2:amd64 (1.47.0-2) over (1.46.2-2) ... Setting up libext2fs2:amd64 (1.47.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16488 files and directories currently installed.) Preparing to unpack .../0-e2fsprogs_1.47.0-2_amd64.deb ... Unpacking e2fsprogs (1.47.0-2) over (1.46.2-2) ... Preparing to unpack .../1-mount_2.38.1-5+b1_amd64.deb ... Unpacking mount (2.38.1-5+b1) over (2.36.1-8+deb11u1) ... Selecting previously unselected package libssl3:amd64. Preparing to unpack .../2-libssl3_3.0.11-1~deb12u2_amd64.deb ... Unpacking libssl3:amd64 (3.0.11-1~deb12u2) ... 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Setting up libssl3:amd64 (3.0.11-1~deb12u2) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 16813 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) over (3.9.2-3) ... Setting up python3-minimal (3.11.2-1+b1) ... (Reading database ... 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Setting up libboost-iostreams1.74.0:amd64 (1.74.0+ds1-21) ... Setting up libglvnd0:amd64 (1.6.0-1) ... Setting up libboost-program-options1.74.0:amd64 (1.74.0+ds1-21) ... Setting up libtirpc-common (1.3.3+ds-1) ... Setting up libmjson-java (1.4.0-3) ... Setting up libxcb-glx0:amd64 (1.15-1) ... Setting up unzip (6.0-28) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libsqlite3-0:amd64 (3.40.1-2) ... Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-1) ... Setting up x11-common (1:7.7+23) ... Installing new version of config file /etc/X11/Xsession ... Installing new version of config file /etc/X11/Xsession.d/20x11-common_process-args ... Installing new version of config file /etc/X11/Xsession.d/90x11-common_ssh-agent ... Installing new version of config file /etc/init.d/x11-common ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libsensors-config (1:3.6.0-7.1) ... Setting up libnghttp2-14:amd64 (1.52.0-1+deb12u1) ... Setting up libdeflate0:amd64 (1.14-1) ... Setting up scala-library (2.11.12-5) ... Setting up libnlopt0:amd64 (2.7.1-5) ... Setting up libplexus-component-annotations-java (2.1.1-1) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up libcom-err2:amd64 (1.47.0-2) ... Setting up libgomp1:amd64 (12.2.0-14) ... Setting up bzip2 (1.0.8-5+b1) ... Setting up libjbig0:amd64 (2.1-6.1) ... Setting up samclip (0.4.0-4) ... Setting up libplexus-cipher-java (2.0-1) ... Setting up libsnappy1v5:amd64 (1.1.9-3) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Setting up tzdata (2024a-0+deb12u1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Feb 23 09:24:23 UTC 2024. Universal Time is now: Fri Feb 23 09:24:23 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:amd64 (1.15-1) ... Setting up libasound2-data (1.2.8-1) ... Setting up librhino-java (1.7.14-2.1) ... Setting up libz3-4:amd64 (4.8.12-3.1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-2) ... Setting up libmbedcrypto7:amd64 (2.28.3-1) ... Setting up libx11-data (2:1.8.4-2+deb12u2) ... Setting up libnspr4:amd64 (2:4.35-1) ... Setting up libxcb-sync1:amd64 (1.15-1) ... Setting up libapache-pom-java (29-2) ... Setting up libavahi-common-data:amd64 (0.8-10) ... Setting up libncurses6:amd64 (6.4-4) ... Setting up libdbus-1-3:amd64 (1.14.10-1~deb12u1) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libboost-regex1.74.0:amd64 (1.74.0+ds1-21) ... Setting up libproc2-0:amd64 (2:4.0.2-3) ... Setting up libpng16-16:amd64 (1.6.39-2) ... Setting up libxz-java (1.9-1) ... Setting up libss2:amd64 (1.47.0-2) ... Setting up libjsoncpp25:amd64 (1.9.5-4) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up util-linux (2.38.1-5+b1) ... Setting up libjbzip2-java (0.9.1-8) ... Setting up libpcsclite1:amd64 (1.9.9-2) ... Setting up libsensors5:amd64 (1:3.6.0-7.1) ... Setting up libncursesw6:amd64 (6.4-4) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Setting up libbamtools2.5.2:amd64 (2.5.2+dfsg-4) ... Setting up ant (1.10.13-1) ... Setting up libglapi-mesa:amd64 (22.3.6-1+deb12u1) ... Setting up logsave (1.47.0-2) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up libvulkan1:amd64 (1.3.239.0-1) ... Setting up libwebp7:amd64 (1.2.4-0.2+deb12u1) ... Setting up libxcb-dri2-0:amd64 (1.15-1) ... Setting up libgif7:amd64 (5.2.1-2.5) ... Setting up libcodemodel-java (2.6+jaxb2.3.0.1-10.1) ... Setting up librngom-java (2.3.0.1-10.1) ... Setting up mount (2.38.1-5+b1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libngs-c++3:amd64 (3.0.3+dfsg-6~deb12u1) ... Setting up libjsoup-java (1.15.3-1) ... Setting up at-spi2-common (2.46.0-5) ... Setting up libtiff6:amd64 (4.5.0-6+deb12u1) ... Setting up bamtools (2.5.2+dfsg-4) ... Setting up libxcb-randr0:amd64 (1.15-1) ... Setting up procps (2:4.0.2-3) ... Installing new version of config file /etc/init.d/procps ... Installing new version of config file /etc/sysctl.d/README.sysctl ... Setting up libasound2:amd64 (1.2.8-1+b1) ... Setting up libplexus-sec-dispatcher-java (2.0-3) ... Setting up libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Setting up ncbi-vdb-data (3.0.2+dfsg-2) ... Setting up libthai-data (0.1.29-1) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up libgtk2.0-common (2.24.33-2) ... Setting up mawk (1.3.4.20200120-3.1) ... Setting up libatk1.0-0:amd64 (2.46.0-5) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Setting up libhttpcore-java (4.4.16-1) ... Setting up libxsom-java (2.3.0.1-10.1) ... Setting up openssl (3.0.11-1~deb12u2) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up velvet (1.2.10+dfsg1-8) ... Setting up libdrm-common (2.4.114-1) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up kmc (3.2.1+dfsg-1+b2) ... Setting up libxcomposite1:amd64 (1:0.4.5-1) ... Setting up readline-common (8.2-1.3) ... Setting up libboost-timer1.74.0:amd64 (1.74.0+ds1-21) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Setting up libargs4j-java (2.33-2) ... Setting up lighter (1.1.2-7) ... Setting up libxcb-dri3-0:amd64 (1.15-1) ... Setting up libwagon-provider-api-java (3.5.3-1) ... Setting up libx11-xcb1:amd64 (2:1.8.4-2+deb12u2) ... Setting up libxdamage1:amd64 (1:1.1.6-1) ... Setting up java-wrappers (0.4) ... Setting up libmbedx509-1:amd64 (2.28.3-1) ... Setting up libmbedtls14:amd64 (2.28.3-1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up fontconfig-config (2.14.1-4) ... Installing new version of config file /etc/fonts/conf.d/README ... Installing new version of config file /etc/fonts/fonts.conf ... Setting up libmaven-parent-java (35-1) ... Setting up libedit2:amd64 (3.1-20221030-2) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libcommons-parent-java (56-1) ... Setting up libavahi-common3:amd64 (0.8-10) ... Setting up libncbi-vdb3:amd64 (3.0.2+dfsg-2) ... Setting up libcommons-logging-java (1.2-3) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up e2fsprogs (1.47.0-2) ... Installing new version of config file /etc/mke2fs.conf ... Setting up skesa (2.4.0-6+b1) ... Setting up libnss3:amd64 (2:3.87.1-1) ... Setting up libcommons-lang-java (2.6-10) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up ant-optional (1.10.13-1) ... Setting up libcommons-jexl2-java (2.1.1-6) ... Setting up libthai0:amd64 (0.1.29-1) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 26 added, 15 removed; done. Setting up libfreetype6:amd64 (2.12.1+dfsg-5) ... Setting up libxfixes3:amd64 (1:6.0.0-2) ... Setting up shared-mime-info (2.2-1) ... Setting up libxinerama1:amd64 (2:1.1.4-3) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Setting up libxrandr2:amd64 (2:1.5.2-2+b1) ... Setting up ucf (3.0043+nmu1) ... Setting up libcommons-lang3-java (3.12.0-2) ... Setting up libdrm2:amd64 (2.4.114-1+b1) ... Setting up libhttpclient-java (4.5.14-1) ... Setting up libllvm15:amd64 (1:15.0.6-4+b1) ... Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-1+b1) ... Setting up libfontconfig1:amd64 (2.14.1-4) ... Setting up ca-certificates-java (20230710~deb12u1) ... Installing new version of config file /etc/ca-certificates/update.d/jks-keystore ... Removing debian:chambers_of_commerce_root_-_2008.pem Removing debian:cybertrust_global_root.pem Removing debian:dst_root_ca_x3.pem Removing debian:ec-acc.pem Removing debian:geotrust_primary_certification_authority_-_g2.pem Removing debian:global_chambersign_root_-_2008.pem Removing debian:globalsign_root_ca_-_r2.pem Removing debian:hellenic_academic_and_research_institutions_rootca_2011.pem Removing debian:network_solutions_certificate_authority.pem Removing debian:quovadis_root_ca.pem Removing debian:sonera_class_2_root_ca.pem Removing debian:staat_der_nederlanden_ev_root_ca.pem Removing debian:staat_der_nederlanden_root_ca_-_g3.pem Removing debian:trustis_fps_root_ca.pem Removing debian:verisign_universal_root_certification_authority.pem Replacing debian:ACCVRAIZ1.pem Replacing debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Replacing debian:Actalis_Authentication_Root_CA.pem Replacing debian:AffirmTrust_Commercial.pem Replacing debian:AffirmTrust_Networking.pem Replacing debian:AffirmTrust_Premium.pem Replacing debian:AffirmTrust_Premium_ECC.pem Replacing debian:Amazon_Root_CA_1.pem Replacing debian:Amazon_Root_CA_2.pem Replacing debian:Amazon_Root_CA_3.pem Replacing debian:Amazon_Root_CA_4.pem Replacing debian:Atos_TrustedRoot_2011.pem Replacing debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068_2.pem Replacing debian:Baltimore_CyberTrust_Root.pem Replacing debian:Buypass_Class_2_Root_CA.pem Replacing debian:Buypass_Class_3_Root_CA.pem Replacing debian:CA_Disig_Root_R2.pem Replacing debian:CFCA_EV_ROOT.pem Replacing debian:COMODO_Certification_Authority.pem Replacing debian:COMODO_ECC_Certification_Authority.pem Replacing debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Replacing debian:Certigna.pem Replacing debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Replacing debian:Certum_Trusted_Network_CA.pem Replacing debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Replacing debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Replacing debian:D-TRUST_Root_Class_3_CA_2_2009.pem Replacing debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Replacing debian:DigiCert_Assured_ID_Root_CA.pem Replacing debian:DigiCert_Assured_ID_Root_G2.pem Replacing debian:DigiCert_Assured_ID_Root_G3.pem Replacing debian:DigiCert_Global_Root_CA.pem Replacing debian:DigiCert_Global_Root_G2.pem Replacing debian:DigiCert_Global_Root_G3.pem Replacing debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Replacing debian:DigiCert_Trusted_Root_G4.pem Replacing debian:E-Tugra_Certification_Authority.pem Adding debian:E-Tugra_Global_Root_CA_ECC_v3.pem Adding debian:E-Tugra_Global_Root_CA_RSA_v3.pem Replacing debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Replacing debian:Entrust_Root_Certification_Authority.pem Replacing debian:Entrust_Root_Certification_Authority_-_EC1.pem Replacing debian:Entrust_Root_Certification_Authority_-_G2.pem Replacing debian:Entrust_Root_Certification_Authority_-_G4.pem Replacing debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Replacing debian:GTS_Root_R1.pem Replacing debian:GTS_Root_R2.pem Replacing debian:GTS_Root_R3.pem Replacing debian:GTS_Root_R4.pem Replacing debian:GlobalSign_ECC_Root_CA_-_R4.pem Replacing debian:GlobalSign_ECC_Root_CA_-_R5.pem Replacing debian:GlobalSign_Root_CA.pem Replacing debian:GlobalSign_Root_CA_-_R3.pem Replacing debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Replacing debian:Go_Daddy_Class_2_CA.pem Replacing debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Replacing debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Replacing debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Replacing debian:Hongkong_Post_Root_CA_1.pem Replacing debian:Hongkong_Post_Root_CA_3.pem Replacing debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Replacing debian:IdenTrust_Commercial_Root_CA_1.pem Replacing debian:IdenTrust_Public_Sector_Root_CA_1.pem Replacing debian:Izenpe.com.pem Replacing debian:Microsec_e-Szigno_Root_CA_2009.pem Replacing debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Replacing debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Replacing debian:NAVER_Global_Root_Certification_Authority.pem Replacing debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Replacing debian:OISTE_WISeKey_Global_Root_GB_CA.pem Replacing debian:OISTE_WISeKey_Global_Root_GC_CA.pem Replacing debian:QuoVadis_Root_CA_1_G3.pem Replacing debian:QuoVadis_Root_CA_2.pem Replacing debian:QuoVadis_Root_CA_2_G3.pem Replacing debian:QuoVadis_Root_CA_3.pem Replacing debian:QuoVadis_Root_CA_3_G3.pem Replacing debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Replacing debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Replacing debian:SSL.com_Root_Certification_Authority_ECC.pem Replacing debian:SSL.com_Root_Certification_Authority_RSA.pem Replacing debian:SZAFIR_ROOT_CA2.pem Replacing debian:SecureSign_RootCA11.pem Replacing debian:SecureTrust_CA.pem Replacing debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Replacing debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Replacing debian:Security_Communication_Root_CA.pem Replacing debian:Starfield_Class_2_CA.pem Replacing debian:Starfield_Root_Certificate_Authority_-_G2.pem Replacing debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Replacing debian:SwissSign_Gold_CA_-_G2.pem Replacing debian:SwissSign_Silver_CA_-_G2.pem Replacing debian:T-TeleSec_GlobalRoot_Class_2.pem Replacing debian:T-TeleSec_GlobalRoot_Class_3.pem Replacing debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Replacing debian:TWCA_Global_Root_CA.pem Replacing debian:TWCA_Root_Certification_Authority.pem Replacing debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Replacing debian:TrustCor_ECA-1.pem Replacing debian:TrustCor_RootCert_CA-1.pem Replacing debian:TrustCor_RootCert_CA-2.pem Replacing debian:Trustwave_Global_Certification_Authority.pem Replacing debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Replacing debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Replacing debian:UCA_Extended_Validation_Root.pem Replacing debian:UCA_Global_G2_Root.pem Replacing debian:USERTrust_ECC_Certification_Authority.pem Replacing debian:USERTrust_RSA_Certification_Authority.pem Replacing debian:XRamp_Global_CA_Root.pem Replacing debian:certSIGN_ROOT_CA.pem Replacing debian:certSIGN_Root_CA_G2.pem Replacing debian:e-Szigno_Root_CA_2017.pem Replacing debian:ePKI_Root_Certification_Authority.pem Replacing debian:emSign_ECC_Root_CA_-_C3.pem Replacing debian:emSign_ECC_Root_CA_-_G3.pem Replacing debian:emSign_Root_CA_-_C1.pem Replacing debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up libtxw2-java (2.3.0.1-10.1) ... Setting up libavahi-client3:amd64 (0.8-10) ... Setting up libdrm-amdgpu1:amd64 (2.4.114-1+b1) ... Setting up libncbi-ngs3:amd64 (3.0.3+dfsg-6~deb12u1) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libjaxb-java (2.3.0.1-10.1) ... Setting up gtk-update-icon-cache (3.24.38-2~deb12u1) ... Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libngs-jni:amd64 (3.0.3+dfsg-6~deb12u1) ... Setting up libdrm-nouveau2:amd64 (2.4.114-1+b1) ... Setting up libxi6:amd64 (2:1.8-1+b1) ... Setting up libcommons-compress-java (1.22-1) ... Setting up libcommons-io-java (2.11.0-2) ... Setting up libdrm-radeon1:amd64 (2.4.114-1+b1) ... Setting up libxtst6:amd64 (2:1.2.3-1.1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up libxcursor1:amd64 (1:1.2.1-1) ... Setting up libpango-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libdrm-intel1:amd64 (2.4.114-1+b1) ... Setting up libgl1-mesa-dri:amd64 (22.3.6-1+deb12u1) ... Setting up libcurl3-gnutls:amd64 (7.88.1-10+deb12u5) ... Setting up libcairo2:amd64 (1.16.0-7) ... Setting up libmaven-resolver-java (1.6.3-1) ... Setting up adwaita-icon-theme (43-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libcups2:amd64 (2.4.2-3+deb12u5) ... Setting up libwagon-http-java (3.5.3-1) ... Setting up libmaven-shared-utils-java (3.3.4-1) ... Setting up libngs-java:amd64 (3.0.3+dfsg-6~deb12u1) ... Setting up libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libhtsjdk-java (3.0.4+dfsg-2) ... Setting up libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libhts3:amd64 (1.16+ds-3) ... Setting up libplexus-io-java (3.3.1-2) ... Setting up libglx-mesa0:amd64 (22.3.6-1+deb12u1) ... Setting up libglx0:amd64 (1.6.0-1) ... Setting up libmaven3-core-java (3.8.7-1) ... Setting up libmaven-shared-io-java (3.0.0-4) ... Setting up libgtk2.0-0:amd64 (2.24.33-2) ... Setting up python3 (3.11.2-1+b1) ... Setting up samtools (1.16.1-1) ... Setting up libgl1:amd64 (1.6.0-1) ... Setting up openjdk-17-jre-headless:amd64 (17.0.10+7-1~deb12u1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libplexus-archiver-java (4.6.1-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up python3-joblib (1.2.0-4) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-yaml (6.0-3+b2) ... Setting up megahit (1.2.9-4) ... Setting up spades (3.15.5+dfsg-2) ... Setting up libguava-java (31.1-1) ... Setting up liberror-prone-java (2.18.0-1) ... Processing triggers for libc-bin (2.36-9+deb12u4) ... Processing triggers for debianutils (5.7-0.5~deb12u1) ... Processing triggers for ca-certificates-java (20230710~deb12u1) ... done. Setting up default-jre-headless (2:1.17-74) ... Setting up openjdk-17-jre:amd64 (17.0.10+7-1~deb12u1) ... Setting up default-jre (2:1.17-74) ... Setting up pilon (1.24-2) ... Setting up shovill (1.1.0-9) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20230710~deb12u1) ... done. 1m56.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-get', '-yf', 'dist-upgrade'] 1m56.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m57.8s DUMP: 0942a352c5bc637c4fdbc12bf31cd5ba - 1m57.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 1m57.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-cache', 'show', '--no-all-versions', 'shovill'] 1m58.1s DUMP: Package: shovill Version: 1.1.0-9 Installed-Size: 40 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl:any, spades, velvet, skesa, megahit, flash, lighter, samtools, bwa, kmc, seqtk, pilon, trimmomatic, pigz, samclip Description-en: Assemble bacterial isolate genomes from Illumina paired-end reads Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other assemblers like SKESA, Velvet and Megahit, so you can take advantage of the pre- and post-processing the Shovill provides with those too. Description-md5: 8695f2fc2647e597d0b8f3983a621eea Homepage: https://github.com/tseemann/shovill Section: science Priority: optional Filename: pool/main/s/shovill/shovill_1.1.0-9_amd64.deb Size: 13488 MD5sum: 17ed6cadd0b6dd8fc411afb3b24ee02c SHA256: f648c19fe514a541e6ca6495f3d99269fa504888757f8a07f2a6536133fea77c 1m58.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-cache', 'show', '--no-all-versions', 'shovill'] 1m58.1s INFO: apt-cache knows about the following packages: shovill 1m58.1s INFO: Running scripts pre_install 1m58.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_database-server'] 1m58.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_database-server'] 1m58.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_exceptions'] 1m58.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_exceptions'] 1m58.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_extras'] 1m58.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_extras'] 1m58.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_foreign_architecture'] 1m58.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_foreign_architecture'] 1m58.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m58.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 1m58.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-cache', 'policy'] 1m58.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.5,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 1m58.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-cache', 'policy'] 1m58.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-cache', 'policy', 'shovill'] 1m58.2s DUMP: shovill: Installed: 1.1.0-9 Candidate: 1.1.0-9 Version table: *** 1.1.0-9 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 100 /var/lib/dpkg/status 1m58.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-cache', 'policy', 'shovill'] 1m58.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-get', '-y', 'install', 'shovill'] 1m58.8s DUMP: Reading package lists... Building dependency tree... Reading state information... shovill is already the newest version (1.1.0-9). The following packages were automatically installed and are no longer required: ant ant-optional libactivation-java libaopalliance-java libargs4j-java libatinject-jsr330-api-java libbamtools2.5.1 libcdi-api-java libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-io-java libcommons-lang3-java libdom4j-java libdtd-parser-java liberror-prone-java libfastinfoset-java libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libguava-java libguice-java libhat-trie0 libhttpclient-java libhttpcore-java libicu67 libistack-commons-java libjaxb-api-java libjaxb-java libjaxen-java libjsoncpp24 libjsoup-java libjsr305-java libldap-2.4-2 libllvm11 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec3 libngs-sdk-dev libngs-sdk2 libperl5.32 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libprocps8 libpython3.9-minimal libpython3.9-stdlib librelaxng-datatype-java librngom-java libsisu-inject-java libsisu-plexus-java libslf4j-java libstax-ex-java libstreambuffer-java libtxw2-java libvulkan1 libwagon-http-java libwagon-provider-api-java libxml-commons-resolver1.1-java libxsom-java openjdk-11-jre openjdk-11-jre-headless perl-modules-5.32 python3.9 python3.9-minimal ucf Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1m58.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-get', '-y', 'install', 'shovill'] 1m58.8s INFO: Running scripts post_install 1m58.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_install_exceptions'] 1m58.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_install_exceptions'] 1m58.8s INFO: Running scripts post_distupgrade 1m58.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m58.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_distupgrade_base_cleanup'] 1m58.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_distupgrade_exceptions'] 1m58.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_distupgrade_exceptions'] 1m58.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m58.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 1m58.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m58.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_distupgrade_squeeze-backports'] 1m58.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_distupgrade_zz_backports'] 1m58.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_distupgrade_zz_backports'] 1m58.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu'] 2m0.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu'] 2m0.2s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpg85mmkgu to sid 2m0.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 2m0.2s INFO: Running scripts pre_distupgrade 2m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 2m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 2m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_distupgrade_exceptions'] 2m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_distupgrade_exceptions'] 2m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 2m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 2m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_distupgrade_zz_database-server'] 2m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_distupgrade_zz_database-server'] 2m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 2m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 2m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-get', 'update'] 2m4.6s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9747 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7151 kB] Fetched 17.1 MB in 3s (5387 kB/s) Reading package lists... 2m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-get', 'update'] 2m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-get', '-yf', 'dist-upgrade'] 3m6.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: ant ant-optional gcc-12-base libactivation-java libaopalliance-java libargs4j-java libatinject-jsr330-api-java libbamtools2.5.1 libboost-chrono1.74.0 libboost-iostreams1.74.0 libboost-program-options1.74.0 libboost-regex1.74.0 libboost-timer1.74.0 libcdi-api-java libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-io-java libcommons-lang3-java libdom4j-java libdtd-parser-java liberror-prone-java libfastinfoset-java libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libguava-java libguice-java libhat-trie0 libhttpclient-java libhttpcore-java libicu67 libistack-commons-java libjaxb-api-java libjaxb-java libjaxen-java libjsoncpp24 libjsoup-java libjsr305-java libldap-2.4-2 libllvm11 libllvm15 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec3 libngs-sdk-dev libngs-sdk2 libperl5.32 libperl5.36 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libprocps8 libpython3.9-minimal libpython3.9-stdlib librelaxng-datatype-java librngom-java libsisu-inject-java libsisu-plexus-java libslf4j-java libstax-ex-java libstreambuffer-java libtxw2-java libwagon-http-java libwagon-provider-api-java libxml-commons-resolver1.1-java libxsom-java openjdk-11-jre openjdk-11-jre-headless perl-modules-5.32 perl-modules-5.36 python3.9 python3.9-minimal ucf Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: fonts-dejavu-mono gcc-14-base libboost-iostreams1.83.0 libboost-program-options1.83.0 libboost-timer1.83.0 libllvm17 libperl5.38 libpython3.12-minimal libpython3.12-stdlib libsharpyuv0 libunistring5 netbase perl-modules-5.38 python3-packaging python3.12 python3.12-minimal The following packages will be upgraded: adduser adwaita-icon-theme ant ant-optional apt at-spi2-common bamtools base-files base-passwd bash bsdutils bwa bzip2 ca-certificates ca-certificates-java coreutils dash debconf debian-archive-keyring debianutils default-jre default-jre-headless diffutils dpkg e2fsprogs findutils fontconfig fontconfig-config fonts-dejavu-core gcc-10-base gcc-12-base gcc-9-base gpgv grep gtk-update-icon-cache hostname init-system-helpers java-common kmc libacl1 libapt-pkg6.0 libasound2 libasound2-data libatk1.0-0 libattr1 libaudit-common libaudit1 libavahi-client3 libavahi-common-data libavahi-common3 libbamtools2.5.2 libblkid1 libboost-chrono1.74.0 libboost-iostreams1.74.0 libboost-program-options1.74.0 libboost-regex1.74.0 libboost-timer1.74.0 libbrotli1 libbsd0 libbz2-1.0 libc-bin libc6 libcairo2 libcap-ng0 libcap2 libcom-err2 libcommons-cli-java libcommons-codec-java libcommons-compress-java libcommons-lang3-java libcommons-logging-java libcrypt1 libcups2 libcurl3-gnutls libdatrie1 libdb5.3 libdbus-1-3 libdebconfclient0 libdeflate0 libdom4j-java libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1 libext2fs2 libffi8 libfontconfig1 libfreetype6 libfribidi0 libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libguava-java libharfbuzz0b libhat-trie0 libhogweed6 libhts3 libhtscodecs2 libhtsjdk-java libicu72 libidn2-0 libjbig0 libjpeg62-turbo libjsoncpp25 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.5-0 liblerc4 libllvm15 liblz4-1 liblzma5 libmaven3-core-java libmbedcrypto7 libmbedtls14 libmbedx509-1 libmd0 libmount1 libmpdec3 libncbi-ngs3 libncurses6 libncursesw6 libnettle8 libnghttp2-14 libngs-c++3 libngs-java libngs-jni libnlopt0 libnsl2 libnspr4 libnss3 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre2-8-0 libpcre3 libpcsclite1 libpixman-1-0 libpng16-16 libproc2-0 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline8 libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage2 libsensors-config libsensors5 libsepol2 libsmartcols1 libsnappy-java libsnappy-jni libsnappy1v5 libsqlite3-0 libss2 libssh2-1 libssl3 libssw0 libstdc++6 libsystemd0 libtasn1-6 libthai-data libthai0 libtiff6 libtinfo6 libtirpc-common libtirpc3 libudev1 libuuid1 libvulkan1 libwebp7 libx11-6 libx11-data libx11-xcb1 libxi6 libxml2 libxxhash0 libz3-4 libzstd1 login logsave mawk media-types megahit mount ncurses-base ncurses-bin openjdk-11-jre openjdk-11-jre-headless openjdk-17-jre openjdk-17-jre-headless openssl passwd perl perl-base pigz pilon procps python3 python3-all python3-distutils python3-joblib python3-lib2to3 python3-minimal python3-pkg-resources python3-yaml python3.11 python3.11-minimal readline-common samtools sed sensible-utils seqtk shared-mime-info skesa spades sysvinit-utils tar tzdata usrmerge util-linux util-linux-extra zlib1g 260 upgraded, 16 newly installed, 0 to remove and 0 not upgraded. Need to get 265 MB of archives. After this operation, 215 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 base-files amd64 13 [70.6 kB] Get:2 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.16 [88.9 kB] Get:3 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2.21-2 [1492 kB] Get:4 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.39.3-6 [96.9 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.37-15 [2750 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.37-15 [602 kB] Get:7 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14-20240201-3 [42.3 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14-20240201-3 [71.6 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2+b1 [559 kB] Get:10 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.4-3+b1 [2950 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.5+dfsg2-2 [295 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14-20240201-3 [714 kB] Get:13 http://deb.debian.org/debian sid/main amd64 bzip2 amd64 1.0.8-5+b2 [40.5 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libbz2-1.0 amd64 1.0.8-5+b2 [38.2 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.47-3 [77.8 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.10.3-2 [708 kB] Get:17 http://deb.debian.org/debian sid/main amd64 liblz4-1 amd64 1.9.4-1+b2 [61.6 kB] Get:18 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.4.5-0.3 [240 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.66-5 [27.4 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 255.3-2 [362 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 255.3-2 [124 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.2-2+b1 [26.6 kB] Get:23 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.3.dfsg-3+b1 [87.8 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0 amd64 2.7.12 [983 kB] Get:25 http://deb.debian.org/debian sid/main amd64 tar amd64 1.35+dfsg-3 [813 kB] Get:26 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.22.4 [1509 kB] Get:27 http://deb.debian.org/debian sid/main amd64 dash amd64 0.5.12-6 [92.1 kB] Get:28 http://deb.debian.org/debian sid/main amd64 diffutils amd64 1:3.10-1 [375 kB] Get:29 http://deb.debian.org/debian sid/main amd64 findutils amd64 4.9.0-5 [636 kB] Get:30 http://deb.debian.org/debian sid/main amd64 grep amd64 3.11-4 [431 kB] Get:31 http://deb.debian.org/debian sid/main amd64 hostname amd64 3.23+nmu2 [10.6 kB] Get:32 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.13+dfsg1-4 [616 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libncurses6 amd64 6.4+20240113-1 [104 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.4+20240113-1 [135 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.4+20240113-1 [342 kB] Get:36 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.4+20240113-1 [431 kB] Get:37 http://deb.debian.org/debian sid/main amd64 perl-modules-5.38 all 5.38.2-3 [2899 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libperl5.38 amd64 5.38.2-3 [4275 kB] Get:39 http://deb.debian.org/debian sid/main amd64 perl amd64 5.38.2-3 [236 kB] Get:40 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.38.2-3 [1643 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.36-4 [89.8 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libdb5.3 amd64 5.3.28+dfsg2-4+b1 [697 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libgdbm6 amd64 1.23-5+b1 [72.8 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4 amd64 1.23-5+b1 [48.5 kB] Get:45 http://deb.debian.org/debian sid/main amd64 sed amd64 4.9-2 [329 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.39.3-6 [159 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.42-4+b1 [262 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.5-2 [74.8 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.39.3-6 [190 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:3.1.2-2 [11.3 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.8.4-2 [16.9 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:3.1.2-2 [48.4 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.39.3-6 [117 kB] Get:54 http://deb.debian.org/debian sid/main amd64 util-linux-extra amd64 2.39.3-6 [155 kB] Get:55 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.39.3-6 [1230 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libnettle8 amd64 3.9.1-2+b1 [296 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.3-4 [418 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.1-2 [421 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libhogweed6 amd64 3.9.1-2+b1 [328 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.7-2 [128 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.19.0-3+b2 [48.9 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libgnutls30 amd64 3.8.3-1 [1425 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.271+b1 [10.2 kB] Get:65 http://deb.debian.org/debian sid/main amd64 base-passwd amd64 3.6.3 [50.8 kB] Get:66 http://deb.debian.org/debian sid/main amd64 debconf all 1.5.86 [119 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.5.2-9.1+b1 [65.8 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.5-1 [9908 B] Get:69 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.5-2 [277 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.5-1+b2 [90.3 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.5.2-9.1+b1 [50.1 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.5.2-9.1+b1 [265 kB] Get:73 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.13+dfsg1-4 [973 kB] Get:74 http://deb.debian.org/debian sid/main amd64 adduser all 3.137 [140 kB] Get:75 http://deb.debian.org/debian sid/main amd64 gpgv amd64 2.2.40-1.1+b1 [649 kB] Get:76 http://deb.debian.org/debian sid/main amd64 debian-archive-keyring all 2023.4 [161 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.5.5-1 [47.0 kB] Get:78 http://deb.debian.org/debian sid/main amd64 apt amd64 2.7.12 [1368 kB] Get:79 http://deb.debian.org/debian sid/main amd64 usrmerge all 39 [13.1 kB] Get:80 http://deb.debian.org/debian sid/main amd64 init-system-helpers all 1.66 [39.0 kB] Get:81 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.4+20240113-1 [268 kB] Get:82 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.08-6 [32.1 kB] Get:83 http://deb.debian.org/debian sid/main amd64 logsave amd64 1.47.0-2+b1 [19.9 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libext2fs2 amd64 1.47.0-2+b1 [205 kB] Get:85 http://deb.debian.org/debian sid/main amd64 e2fsprogs amd64 1.47.0-2+b1 [572 kB] Get:86 http://deb.debian.org/debian sid/main amd64 mount amd64 2.39.3-6 [143 kB] Get:87 http://deb.debian.org/debian sid/main amd64 pigz amd64 2.8-1 [62.7 kB] Get:88 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:89 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:90 http://deb.debian.org/debian sid/main amd64 python3.11 amd64 3.11.8-1 [597 kB] Get:91 http://deb.debian.org/debian sid/main amd64 tzdata all 2024a-1 [255 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1 [10.7 kB] Get:93 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-5+b1 [135 kB] Get:94 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-5+b1 [333 kB] Get:95 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-5+b1 [80.0 kB] Get:96 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-5+b1 [33.2 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.0-2+b1 [20.1 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:99 http://deb.debian.org/debian sid/main amd64 libssl3 amd64 3.1.5-1 [2063 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libtirpc3 amd64 1.3.4+ds-1 [82.1 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-3 [40.0 kB] Get:102 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-3 [69.1 kB] Get:103 http://deb.debian.org/debian sid/main amd64 libreadline8 amd64 8.2-3 [167 kB] Get:104 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.45.1-1 [894 kB] Get:105 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.39.3-6 [29.7 kB] Get:106 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.8-1 [1825 kB] Get:107 http://deb.debian.org/debian sid/main amd64 python3.11-minimal amd64 3.11.8-1 [2037 kB] Get:108 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.8-1 [817 kB] Get:109 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.0-1 [101 kB] Get:110 http://deb.debian.org/debian sid/main amd64 python3-all amd64 3.11.6-1 [1060 B] Get:111 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.11.6-1 [26.2 kB] Get:112 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.11.6-1 [26.2 kB] Get:113 http://deb.debian.org/debian sid/main amd64 python3-distutils all 3.11.5-1 [131 kB] Get:114 http://deb.debian.org/debian sid/main amd64 python3-lib2to3 all 3.11.5-1 [77.5 kB] Get:115 http://deb.debian.org/debian sid/main amd64 libpython3.12-minimal amd64 3.12.2-1 [807 kB] Get:116 http://deb.debian.org/debian sid/main amd64 python3.12-minimal amd64 3.12.2-1 [2186 kB] Get:117 http://deb.debian.org/debian sid/main amd64 libpython3.12-stdlib amd64 3.12.2-1 [1929 kB] Get:118 http://deb.debian.org/debian sid/main amd64 python3.12 amd64 3.12.2-1 [653 kB] Get:119 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.11.6-1 [9224 B] Get:120 http://deb.debian.org/debian sid/main amd64 libpam-runtime all 1.5.2-9.1 [134 kB] Get:121 http://deb.debian.org/debian sid/main amd64 libacl1 amd64 2.3.2-1 [32.4 kB] Get:122 http://deb.debian.org/debian sid/main amd64 libattr1 amd64 1:2.5.2-1 [22.5 kB] Get:123 http://deb.debian.org/debian sid/main amd64 libmd0 amd64 1.1.0-2 [35.8 kB] Get:124 http://deb.debian.org/debian sid/main amd64 mawk amd64 1.3.4.20240123-1 [136 kB] Get:125 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get:126 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get:127 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get:128 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.1.5-1 [1241 kB] Get:129 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:130 http://deb.debian.org/debian sid/main amd64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [307 kB] Get:131 http://deb.debian.org/debian sid/main amd64 libglib2.0-0 amd64 2.78.4-1 [1452 kB] Get:132 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:133 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:134 http://deb.debian.org/debian sid/main amd64 shared-mime-info amd64 2.4-1 [751 kB] Get:135 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-2+b2 [167 kB] Get:136 http://deb.debian.org/debian sid/main amd64 libpng16-16 amd64 1.6.42-1 [277 kB] Get:137 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.19-1 [41.4 kB] Get:138 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get:139 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get:140 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [108 kB] Get:141 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.3.2-0.4 [308 kB] Get:142 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get:143 http://deb.debian.org/debian sid/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.10+dfsg-3+b1 [138 kB] Get:144 http://deb.debian.org/debian sid/main amd64 gtk-update-icon-cache amd64 3.24.41-1 [45.7 kB] Get:145 http://deb.debian.org/debian sid/main amd64 adwaita-icon-theme all 46~beta-4 [614 kB] Get:146 http://deb.debian.org/debian sid/main amd64 ant-optional all 1.10.14-1 [455 kB] Get:147 http://deb.debian.org/debian sid/main amd64 ca-certificates-java all 20240118 [11.6 kB] Get:148 http://deb.debian.org/debian sid/main amd64 java-common all 0.75 [6640 B] Get:149 http://deb.debian.org/debian sid/main amd64 libavahi-client3 amd64 0.8-13+b1 [47.1 kB] Get:150 http://deb.debian.org/debian sid/main amd64 libavahi-common3 amd64 0.8-13+b1 [43.3 kB] Get:151 http://deb.debian.org/debian sid/main amd64 libavahi-common-data amd64 0.8-13+b1 [111 kB] Get:152 http://deb.debian.org/debian sid/main amd64 libdbus-1-3 amd64 1.14.10-4 [203 kB] Get:153 http://deb.debian.org/debian sid/main amd64 libcups2 amd64 2.4.7-1+b1 [247 kB] Get:154 http://deb.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get:155 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:156 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:157 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-1 [317 kB] Get:158 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:159 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b1 [439 kB] Get:160 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-1 [388 kB] Get:161 http://deb.debian.org/debian sid/main amd64 libnspr4 amd64 2:4.35-1.1+b1 [109 kB] Get:162 http://deb.debian.org/debian sid/main amd64 libnss3 amd64 2:3.98-1 [1382 kB] Get:163 http://deb.debian.org/debian sid/main amd64 libasound2 amd64 1.2.10-3 [368 kB] Get:164 http://deb.debian.org/debian sid/main amd64 libasound2-data all 1.2.10-3 [20.7 kB] Get:165 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get:166 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 8.3.0-2 [2213 kB] Get:167 http://deb.debian.org/debian sid/main amd64 libpcsclite1 amd64 2.0.1-1+b1 [51.1 kB] Get:168 http://deb.debian.org/debian sid/main amd64 openjdk-17-jre amd64 17.0.10+7-1 [184 kB] Get:169 http://deb.debian.org/debian sid/main amd64 openjdk-17-jre-headless amd64 17.0.10+7-1 [43.7 MB] Get:170 http://deb.debian.org/debian sid/main amd64 libgtk2.0-common all 2.24.33-3 [2659 kB] Get:171 http://deb.debian.org/debian sid/main amd64 at-spi2-common all 2.50.0-1 [163 kB] Get:172 http://deb.debian.org/debian sid/main amd64 libatk1.0-0 amd64 2.50.0-1+b1 [50.1 kB] Get:173 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get:174 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.7-1 [802 kB] Get:175 http://deb.debian.org/debian sid/main amd64 libx11-xcb1 amd64 2:1.8.7-1 [232 kB] Get:176 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:177 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.0-1+b1 [531 kB] Get:178 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [35.1 kB] Get:179 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [215 kB] Get:180 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [47.3 kB] Get:181 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.15.0-1 [462 kB] Get:182 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get:183 http://deb.debian.org/debian sid/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:184 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB] Get:185 http://deb.debian.org/debian sid/main amd64 libthai0 amd64 0.1.29-2 [49.1 kB] Get:186 http://deb.debian.org/debian sid/main amd64 libxi6 amd64 2:1.8.1-1 [79.0 kB] Get:187 http://deb.debian.org/debian sid/main amd64 libgtk2.0-0 amd64 2.24.33-3 [1816 kB] Get:188 http://deb.debian.org/debian sid/main amd64 libdrm-common all 2.4.120-2 [7688 B] Get:189 http://deb.debian.org/debian sid/main amd64 libdrm2 amd64 2.4.120-2 [38.1 kB] Get:190 http://deb.debian.org/debian sid/main amd64 libvulkan1 amd64 1.3.275.0-1 [124 kB] Get:191 http://deb.debian.org/debian sid/main amd64 libdrm-amdgpu1 amd64 2.4.120-2 [21.4 kB] Get:192 http://deb.debian.org/debian sid/main amd64 libpciaccess0 amd64 0.17-3 [51.6 kB] Get:193 http://deb.debian.org/debian sid/main amd64 libdrm-intel1 amd64 2.4.120-2 [62.7 kB] Get:194 http://deb.debian.org/debian sid/main amd64 libdrm-nouveau2 amd64 2.4.120-2 [19.3 kB] Get:195 http://deb.debian.org/debian sid/main amd64 libdrm-radeon1 amd64 2.4.120-2 [22.2 kB] Get:196 http://deb.debian.org/debian sid/main amd64 libelf1 amd64 0.190-1+b1 [176 kB] Get:197 http://deb.debian.org/debian sid/main amd64 libbsd0 amd64 0.11.8-1 [125 kB] Get:198 http://deb.debian.org/debian sid/main amd64 libedit2 amd64 3.1-20230828-1 [93.1 kB] Get:199 http://deb.debian.org/debian sid/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get:200 http://deb.debian.org/debian sid/main amd64 libllvm17 amd64 1:17.0.6-5 [23.7 MB] Get:201 http://deb.debian.org/debian sid/main amd64 libsensors-config all 1:3.6.0-8 [14.4 kB] Get:202 http://deb.debian.org/debian sid/main amd64 libsensors5 amd64 1:3.6.0-8+b1 [34.7 kB] Get:203 http://deb.debian.org/debian sid/main amd64 libgl1-mesa-dri amd64 24.0.1-1 [8278 kB] Get:204 http://deb.debian.org/debian sid/main amd64 libglx-mesa0 amd64 24.0.1-1 [151 kB] Get:205 http://deb.debian.org/debian sid/main amd64 libglapi-mesa amd64 24.0.1-1 [36.1 kB] Get:206 http://deb.debian.org/debian sid/main amd64 libgl1 amd64 1.7.0-1 [89.7 kB] Get:207 http://deb.debian.org/debian sid/main amd64 libglx0 amd64 1.7.0-1 [34.7 kB] Get:208 http://deb.debian.org/debian sid/main amd64 libglvnd0 amd64 1.7.0-1 [51.3 kB] Get:209 http://deb.debian.org/debian sid/main amd64 libgif7 amd64 5.2.1-2.5+b1 [43.1 kB] Get:210 http://deb.debian.org/debian sid/main amd64 default-jre amd64 2:1.17-75 [1056 B] Get:211 http://deb.debian.org/debian sid/main amd64 default-jre-headless amd64 2:1.17-75 [3068 B] Get:212 http://deb.debian.org/debian sid/main amd64 openjdk-11-jre amd64 11.0.22+7-2 [194 kB] Get:213 http://deb.debian.org/debian sid/main amd64 openjdk-11-jre-headless amd64 11.0.22+7-2 [38.3 MB] Get:214 http://deb.debian.org/debian sid/main amd64 ant all 1.10.14-1 [2162 kB] Get:215 http://deb.debian.org/debian sid/main amd64 libbamtools2.5.2 amd64 2.5.2+dfsg-5 [159 kB] Get:216 http://deb.debian.org/debian sid/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get:217 http://deb.debian.org/debian sid/main amd64 bamtools amd64 2.5.2+dfsg-5 [206 kB] Get:218 http://deb.debian.org/debian sid/main amd64 bwa amd64 0.7.17-7+b3 [212 kB] Get:219 http://deb.debian.org/debian sid/main amd64 gcc-10-base amd64 10.5.0-3 [36.6 kB] Get:220 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14-20240201-3 [136 kB] Get:221 http://deb.debian.org/debian sid/main amd64 gcc-12-base amd64 12.3.0-14 [41.2 kB] Get:222 http://deb.debian.org/debian sid/main amd64 gcc-9-base amd64 9.5.0-5 [28.8 kB] Get:223 http://deb.debian.org/debian sid/main amd64 kmc amd64 3.2.4+dfsg-1 [1015 kB] Get:224 http://deb.debian.org/debian sid/main amd64 libboost-chrono1.74.0 amd64 1.74.0+ds1-23+b1 [227 kB] Get:225 http://deb.debian.org/debian sid/main amd64 libboost-iostreams1.74.0 amd64 1.74.0+ds1-23+b1 [239 kB] Get:226 http://deb.debian.org/debian sid/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-2+b2 [253 kB] Get:227 http://deb.debian.org/debian sid/main amd64 libboost-program-options1.74.0 amd64 1.74.0+ds1-23+b1 [331 kB] Get:228 http://deb.debian.org/debian sid/main amd64 libboost-program-options1.83.0 amd64 1.83.0-2+b2 [345 kB] Get:229 http://deb.debian.org/debian sid/main amd64 libboost-regex1.74.0 amd64 1.74.0+ds1-23+b1 [485 kB] Get:230 http://deb.debian.org/debian sid/main amd64 libboost-timer1.74.0 amd64 1.74.0+ds1-23+b1 [225 kB] Get:231 http://deb.debian.org/debian sid/main amd64 libboost-timer1.83.0 amd64 1.83.0-2+b2 [234 kB] Get:232 http://deb.debian.org/debian sid/main amd64 libcommons-cli-java all 1.6.0-1 [60.4 kB] Get:233 http://deb.debian.org/debian sid/main amd64 libcommons-codec-java all 1.16.0-1 [297 kB] Get:234 http://deb.debian.org/debian sid/main amd64 libcommons-compress-java all 1.25.0-1 [635 kB] Get:235 http://deb.debian.org/debian sid/main amd64 libcommons-lang3-java all 3.14.0-1 [621 kB] Get:236 http://deb.debian.org/debian sid/main amd64 libcommons-logging-java all 1.3.0-1 [68.6 kB] Get:237 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-4+b1 [19.7 kB] Get:238 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-4+b1 [57.0 kB] Get:239 http://deb.debian.org/debian sid/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5+b3 [184 kB] Get:240 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.59.0-1 [74.3 kB] Get:241 http://deb.debian.org/debian sid/main amd64 libpsl5 amd64 0.21.2-1+b1 [59.1 kB] Get:242 http://deb.debian.org/debian sid/main amd64 libssh2-1 amd64 1.11.0-4 [215 kB] Get:243 http://deb.debian.org/debian sid/main amd64 libcurl3-gnutls amd64 8.6.0-3 [421 kB] Get:244 http://deb.debian.org/debian sid/main amd64 libdom4j-java all 2.1.4-1 [312 kB] Get:245 http://deb.debian.org/debian sid/main amd64 libguava-java all 32.0.1-1 [2708 kB] Get:246 http://deb.debian.org/debian sid/main amd64 libhat-trie0 amd64 0.1.2-3 [11.8 kB] Get:247 http://deb.debian.org/debian sid/main amd64 samtools amd64 1.19.2-1 [645 kB] Get:248 http://deb.debian.org/debian sid/main amd64 libhts3 amd64 1.19+ds-1 [447 kB] Get:249 http://deb.debian.org/debian sid/main amd64 libhtscodecs2 amd64 1.6.0-1+b1 [93.0 kB] Get:250 http://deb.debian.org/debian sid/main amd64 libngs-java amd64 3.0.3+dfsg-6 [110 kB] Get:251 http://deb.debian.org/debian sid/main amd64 libngs-jni amd64 3.0.3+dfsg-6 [23.4 kB] Get:252 http://deb.debian.org/debian sid/main amd64 libncbi-ngs3 amd64 3.0.3+dfsg-6 [154 kB] Get:253 http://deb.debian.org/debian sid/main amd64 libsnappy1v5 amd64 1.1.10-1+b1 [27.6 kB] Get:254 http://deb.debian.org/debian sid/main amd64 libsnappy-jni amd64 1.1.10.5-1 [6360 B] Get:255 http://deb.debian.org/debian sid/main amd64 libsnappy-java all 1.1.10.5-1 [87.4 kB] Get:256 http://deb.debian.org/debian sid/main amd64 libhtsjdk-java all 4.1.0+dfsg-1 [1833 kB] Get:257 http://deb.debian.org/debian sid/main amd64 libllvm15 amd64 1:15.0.7-10 [23.2 MB] Get:258 http://deb.debian.org/debian sid/main amd64 libmaven3-core-java all 3.8.7-2 [1573 kB] Get:259 http://deb.debian.org/debian sid/main amd64 libmbedcrypto7 amd64 2.28.7-1 [280 kB] Get:260 http://deb.debian.org/debian sid/main amd64 libmbedx509-1 amd64 2.28.7-1 [130 kB] Get:261 http://deb.debian.org/debian sid/main amd64 libmbedtls14 amd64 2.28.7-1 [165 kB] Get:262 http://deb.debian.org/debian sid/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:263 http://deb.debian.org/debian sid/main amd64 libngs-c++3 amd64 3.0.3+dfsg-6 [128 kB] Get:264 http://deb.debian.org/debian sid/main amd64 libnlopt0 amd64 2.7.1-5+b2 [174 kB] Get:265 http://deb.debian.org/debian sid/main amd64 libpcre3 amd64 2:8.39-15+b1 [342 kB] Get:266 http://deb.debian.org/debian sid/main amd64 libss2 amd64 1.47.0-2+b1 [24.8 kB] Get:267 http://deb.debian.org/debian sid/main amd64 libssw0 amd64 1.1-14 [20.9 kB] Get:268 http://deb.debian.org/debian sid/main amd64 megahit amd64 1.2.9-5 [1163 kB] Get:269 http://deb.debian.org/debian sid/main amd64 pilon all 1.24-3 [497 kB] Get:270 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get:271 http://deb.debian.org/debian sid/main amd64 python3-joblib all 1.3.2-1 [217 kB] Get:272 http://deb.debian.org/debian sid/main amd64 python3-packaging all 23.2-1 [44.8 kB] Get:273 http://deb.debian.org/debian sid/main amd64 python3-yaml amd64 6.0.1-2 [177 kB] Get:274 http://deb.debian.org/debian sid/main amd64 seqtk amd64 1.4-2 [34.6 kB] Get:275 http://deb.debian.org/debian sid/main amd64 skesa amd64 2.4.0-6+b2 [571 kB] Get:276 http://deb.debian.org/debian sid/main amd64 spades amd64 3.15.5+dfsg-7 [9020 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 265 MB in 2s (113 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24418 files and directories currently installed.) Preparing to unpack .../libstdc++6_14-20240201-3_amd64.deb ... Unpacking libstdc++6:amd64 (14-20240201-3) over (12.2.0-14) ... Setting up libstdc++6:amd64 (14-20240201-3) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24419 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.66-5_amd64.deb ... Unpacking libcap2:amd64 (1:2.66-5) over (1:2.66-4) ... Setting up libcap2:amd64 (1:2.66-5) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24419 files and directories currently installed.) Preparing to unpack .../libudev1_255.3-2_amd64.deb ... Unpacking libudev1:amd64 (255.3-2) over (252.22-1~deb12u1) ... Setting up libudev1:amd64 (255.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24419 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.2-2+b1_amd64.deb ... Unpacking libxxhash0:amd64 (0.8.2-2+b1) over (0.8.1-1) ... Setting up libxxhash0:amd64 (0.8.2-2+b1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24421 files and directories currently installed.) Preparing to unpack .../tar_1.35+dfsg-3_amd64.deb ... Unpacking tar (1.35+dfsg-3) over (1.34+dfsg-1.2+deb12u1) ... Setting up tar (1.35+dfsg-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24422 files and directories currently installed.) Preparing to unpack .../archives/dpkg_1.22.4_amd64.deb ... Unpacking dpkg (1.22.4) over (1.21.22) ... Setting up dpkg (1.22.4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24410 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-6_amd64.deb ... Unpacking dash (0.5.12-6) over (0.5.12-2) ... Setting up dash (0.5.12-6) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24410 files and directories currently installed.) Preparing to unpack .../findutils_4.9.0-5_amd64.deb ... Unpacking findutils (4.9.0-5) over (4.9.0-4) ... Setting up findutils (4.9.0-5) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24410 files and directories currently installed.) Preparing to unpack .../hostname_3.23+nmu2_amd64.deb ... Unpacking hostname (3.23+nmu2) over (3.23+nmu1) ... Setting up hostname (3.23+nmu2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24409 files and directories currently installed.) Preparing to unpack .../libncurses6_6.4+20240113-1_amd64.deb ... Unpacking libncurses6:amd64 (6.4+20240113-1) over (6.4-4) ... Preparing to unpack .../libncursesw6_6.4+20240113-1_amd64.deb ... Unpacking libncursesw6:amd64 (6.4+20240113-1) over (6.4-4) ... Preparing to unpack .../libtinfo6_6.4+20240113-1_amd64.deb ... Unpacking libtinfo6:amd64 (6.4+20240113-1) over (6.4-4) ... Setting up libtinfo6:amd64 (6.4+20240113-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24409 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.4+20240113-1_amd64.deb ... Unpacking ncurses-bin (6.4+20240113-1) over (6.4-4) ... Setting up ncurses-bin (6.4+20240113-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24409 files and directories currently installed.) Preparing to unpack .../perl_5.38.2-3_amd64.deb ... Unpacking perl (5.38.2-3) over (5.36.0-7+deb12u1) ... Selecting previously unselected package perl-modules-5.38. Preparing to unpack .../perl-modules-5.38_5.38.2-3_all.deb ... Unpacking perl-modules-5.38 (5.38.2-3) ... Selecting previously unselected package libperl5.38:amd64. Preparing to unpack .../libperl5.38_5.38.2-3_amd64.deb ... Unpacking libperl5.38:amd64 (5.38.2-3) ... Preparing to unpack .../perl-base_5.38.2-3_amd64.deb ... Unpacking perl-base (5.38.2-3) over (5.36.0-7+deb12u1) ... Setting up perl-base (5.38.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26345 files and directories currently installed.) Preparing to unpack .../libcrypt1_1%3a4.4.36-4_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.36-4) over (1:4.4.33-2) ... Setting up libcrypt1:amd64 (1:4.4.36-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26345 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28+dfsg2-4+b1_amd64.deb ... Unpacking libdb5.3:amd64 (5.3.28+dfsg2-4+b1) over (5.3.28+dfsg2-1) ... Setting up libdb5.3:amd64 (5.3.28+dfsg2-4+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26346 files and directories currently installed.) Preparing to unpack .../libgdbm6_1.23-5+b1_amd64.deb ... Unpacking libgdbm6:amd64 (1.23-5+b1) over (1.23-3) ... Preparing to unpack .../libgdbm-compat4_1.23-5+b1_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.23-5+b1) over (1.23-3) ... Preparing to unpack .../archives/sed_4.9-2_amd64.deb ... Unpacking sed (4.9-2) over (4.9-1) ... Setting up sed (4.9-2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26348 files and directories currently installed.) Preparing to unpack .../libselinux1_3.5-2_amd64.deb ... Unpacking libselinux1:amd64 (3.5-2) over (3.4-1+b6) ... Setting up libselinux1:amd64 (3.5-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26348 files and directories currently installed.) Preparing to unpack .../libmount1_2.39.3-6_amd64.deb ... Unpacking libmount1:amd64 (2.39.3-6) over (2.38.1-5+b1) ... Setting up libmount1:amd64 (2.39.3-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26347 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a3.1.2-2_all.deb ... Unpacking libaudit-common (1:3.1.2-2) over (1:3.0.9-1) ... Setting up libaudit-common (1:3.1.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26347 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.4-2_amd64.deb ... Unpacking libcap-ng0:amd64 (0.8.4-2) over (0.8.3-1+b3) ... Setting up libcap-ng0:amd64 (0.8.4-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26346 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.1.2-2_amd64.deb ... Unpacking libaudit1:amd64 (1:3.1.2-2) over (1:3.0.9-1) ... Setting up libaudit1:amd64 (1:3.1.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26346 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.39.3-6_amd64.deb ... Unpacking libsmartcols1:amd64 (2.39.3-6) over (2.38.1-5+b1) ... Setting up libsmartcols1:amd64 (2.39.3-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26345 files and directories currently installed.) Preparing to unpack .../util-linux-extra_2.39.3-6_amd64.deb ... Unpacking util-linux-extra (2.39.3-6) over (2.38.1-5+b1) ... dpkg: warning: unable to delete old directory '/usr/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/usr/lib/udev': Directory not empty Setting up util-linux-extra (2.39.3-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26350 files and directories currently installed.) Preparing to unpack .../util-linux_2.39.3-6_amd64.deb ... Unpacking util-linux (2.39.3-6) over (2.38.1-5+b1) ... Setting up util-linux (2.39.3-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26352 files and directories currently installed.) Preparing to unpack .../libnettle8_3.9.1-2+b1_amd64.deb ... Unpacking libnettle8:amd64 (3.9.1-2+b1) over (3.8.1-2) ... Setting up libnettle8:amd64 (3.9.1-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26353 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.6-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.6-1) over (3.4.4-1) ... Setting up libffi8:amd64 (3.4.6-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 26353 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.25.3-4_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.3-4) over (0.24.1-2) ... Setting up libp11-kit0:amd64 (0.25.3-4) ... Selecting previously unselected package libunistring5:amd64. (Reading database ... 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Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 14 added, 8 removed; done. Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b1) ... Setting up shared-mime-info (2.4-1) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-5+b1) ... Setting up libdrm2:amd64 (2.4.120-2) ... Setting up libllvm15:amd64 (1:15.0.7-10) ... Setting up libharfbuzz0b:amd64 (8.3.0-2) ... Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-3+b1) ... Setting up libsnappy-java (1.1.10.5-1) ... Setting up libfontconfig1:amd64 (2.15.0-1) ... Setting up ca-certificates-java (20240118) ... done. Setting up libllvm17:amd64 (1:17.0.6-5) ... Setting up libavahi-client3:amd64 (0.8-13+b1) ... Setting up libhtsjdk-java (4.1.0+dfsg-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.120-2) ... Setting up libtirpc3:amd64 (1.3.4+ds-1) ... Setting up gtk-update-icon-cache (3.24.41-1) ... Setting up fontconfig (2.15.0-1) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:amd64 (2.4.120-2) ... Setting up libdrm-radeon1:amd64 (2.4.120-2) ... Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ... Setting up libdrm-intel1:amd64 (2.4.120-2) ... Setting up libgl1-mesa-dri:amd64 (24.0.1-1) ... Setting up libcurl3-gnutls:amd64 (8.6.0-3) ... Setting up libcairo2:amd64 (1.18.0-1+b1) ... Setting up adwaita-icon-theme (46~beta-4) ... Setting up libcups2:amd64 (2.4.7-1+b1) ... Setting up libnsl2:amd64 (1.3.0-3) ... Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... Setting up libhts3:amd64 (1.19+ds-1) ... Setting up libglx-mesa0:amd64 (24.0.1-1) ... Setting up libpython3.12-stdlib:amd64 (3.12.2-1) ... Setting up libglx0:amd64 (1.7.0-1) ... Setting up libgtk2.0-0:amd64 (2.24.33-3) ... Setting up libpython3.11-stdlib:amd64 (3.11.8-1) ... Setting up python3.12 (3.12.2-1) ... Setting up openjdk-11-jre-headless:amd64 (11.0.22+7-2) ... Setting up samtools (1.19.2-1) ... Setting up libgl1:amd64 (1.7.0-1) ... Setting up openjdk-17-jre-headless:amd64 (17.0.10+7-1) ... Setting up libpython3-stdlib:amd64 (3.11.6-1) ... Setting up python3.11 (3.11.8-1) ... Setting up python3 (3.11.6-1) ... Setting up python3-packaging (23.2-1) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.11.5-1) ... python3.12: can't get files for byte-compilation Setting up python3-joblib (1.3.2-1) ... Setting up python3-all (3.11.6-1) ... Setting up python3-yaml (6.0.1-2) ... Setting up megahit (1.2.9-5) ... Setting up spades (3.15.5+dfsg-7) ... Processing triggers for hicolor-icon-theme (0.17-2) ... Processing triggers for libc-bin (2.37-15) ... Processing triggers for debianutils (5.16) ... Processing triggers for ca-certificates-java (20240118) ... done. Setting up openjdk-17-jre:amd64 (17.0.10+7-1) ... Setting up openjdk-11-jre:amd64 (11.0.22+7-2) ... Setting up ant (1.10.14-1) ... Setting up default-jre-headless (2:1.17-75) ... Setting up default-jre (2:1.17-75) ... Setting up ant-optional (1.10.14-1) ... Setting up pilon (1.24-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. 3m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-get', '-yf', 'dist-upgrade'] 3m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 3m7.9s DUMP: ffe51a742c8d7e68bdf980ea836778f3 - 3m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 3m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-cache', 'show', '--no-all-versions', 'shovill'] 3m8.2s DUMP: Package: shovill Version: 1.1.0-9 Installed-Size: 40 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: perl:any, spades, velvet, skesa, megahit, flash, lighter, samtools, bwa, kmc, seqtk, pilon, trimmomatic, pigz, samclip Description-en: Assemble bacterial isolate genomes from Illumina paired-end reads Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other assemblers like SKESA, Velvet and Megahit, so you can take advantage of the pre- and post-processing the Shovill provides with those too. Description-md5: 8695f2fc2647e597d0b8f3983a621eea Homepage: https://github.com/tseemann/shovill Section: science Priority: optional Filename: pool/main/s/shovill/shovill_1.1.0-9_amd64.deb Size: 13488 MD5sum: 17ed6cadd0b6dd8fc411afb3b24ee02c SHA256: f648c19fe514a541e6ca6495f3d99269fa504888757f8a07f2a6536133fea77c 3m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-cache', 'show', '--no-all-versions', 'shovill'] 3m8.2s INFO: apt-cache knows about the following packages: shovill 3m8.2s INFO: Running scripts pre_install 3m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_database-server'] 3m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_database-server'] 3m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_exceptions'] 3m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_exceptions'] 3m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_extras'] 3m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_extras'] 3m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_foreign_architecture'] 3m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_foreign_architecture'] 3m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m8.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m8.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-cache', 'policy'] 3m8.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 3m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-cache', 'policy'] 3m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-cache', 'policy', 'shovill'] 3m8.3s DUMP: shovill: Installed: 1.1.0-9 Candidate: 1.1.0-9 Version table: *** 1.1.0-9 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 3m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-cache', 'policy', 'shovill'] 3m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-get', '-y', 'install', 'shovill'] 3m9.0s DUMP: Reading package lists... Building dependency tree... Reading state information... shovill is already the newest version (1.1.0-9). The following packages were automatically installed and are no longer required: ant ant-optional gcc-12-base libactivation-java libaopalliance-java libargs4j-java libatinject-jsr330-api-java libbamtools2.5.1 libboost-chrono1.74.0 libboost-iostreams1.74.0 libboost-program-options1.74.0 libboost-regex1.74.0 libboost-timer1.74.0 libcdi-api-java libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-io-java libcommons-lang3-java libdom4j-java libdtd-parser-java liberror-prone-java libfastinfoset-java libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libguava-java libguice-java libhat-trie0 libhttpclient-java libhttpcore-java libicu67 libistack-commons-java libjaxb-api-java libjaxb-java libjaxen-java libjsoncpp24 libjsoup-java libjsr305-java libldap-2.4-2 libllvm11 libllvm15 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec3 libngs-sdk-dev libngs-sdk2 libperl5.32 libperl5.36 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libprocps8 libpython3.9-minimal libpython3.9-stdlib librelaxng-datatype-java librngom-java libsisu-inject-java libsisu-plexus-java libslf4j-java libstax-ex-java libstreambuffer-java libtxw2-java libwagon-http-java libwagon-provider-api-java libxml-commons-resolver1.1-java libxsom-java openjdk-11-jre openjdk-11-jre-headless perl-modules-5.32 perl-modules-5.36 python3.9 python3.9-minimal ucf Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-get', '-y', 'install', 'shovill'] 3m9.0s INFO: Running scripts post_install 3m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_install_exceptions'] 3m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_install_exceptions'] 3m9.0s INFO: Running scripts post_distupgrade 3m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_distupgrade_base_cleanup'] 3m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_distupgrade_base_cleanup'] 3m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_distupgrade_exceptions'] 3m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_distupgrade_exceptions'] 3m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 3m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 3m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_distupgrade_squeeze-backports'] 3m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_distupgrade_squeeze-backports'] 3m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_distupgrade_zz_backports'] 3m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_distupgrade_zz_backports'] 3m9.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu'] 3m10.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu'] 3m10.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu'] 3m11.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu'] 3m11.9s INFO: Running scripts pre_install 3m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_database-server'] 3m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_database-server'] 3m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_exceptions'] 3m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_exceptions'] 3m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_extras'] 3m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_extras'] 3m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_foreign_architecture'] 3m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_foreign_architecture'] 3m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-cache', 'policy'] 3m12.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 3m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-cache', 'policy'] 3m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-cache', 'policy', 'shovill'] 3m12.0s DUMP: shovill: Installed: 1.1.0-9 Candidate: 1.1.0-9 Version table: *** 1.1.0-9 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 3m12.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-cache', 'policy', 'shovill'] 3m12.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-get', '-y', 'install', 'shovill=1.1.0-9'] 3m12.7s DUMP: Reading package lists... Building dependency tree... Reading state information... shovill is already the newest version (1.1.0-9). The following packages were automatically installed and are no longer required: ant ant-optional gcc-12-base libactivation-java libaopalliance-java libargs4j-java libatinject-jsr330-api-java libbamtools2.5.1 libboost-chrono1.74.0 libboost-iostreams1.74.0 libboost-program-options1.74.0 libboost-regex1.74.0 libboost-timer1.74.0 libcdi-api-java libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-io-java libcommons-lang3-java libdom4j-java libdtd-parser-java liberror-prone-java libfastinfoset-java libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libguava-java libguice-java libhat-trie0 libhttpclient-java libhttpcore-java libicu67 libistack-commons-java libjaxb-api-java libjaxb-java libjaxen-java libjsoncpp24 libjsoup-java libjsr305-java libldap-2.4-2 libllvm11 libllvm15 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec3 libngs-sdk-dev libngs-sdk2 libperl5.32 libperl5.36 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libprocps8 libpython3.9-minimal libpython3.9-stdlib librelaxng-datatype-java librngom-java libsisu-inject-java libsisu-plexus-java libslf4j-java libstax-ex-java libstreambuffer-java libtxw2-java libwagon-http-java libwagon-provider-api-java libxml-commons-resolver1.1-java libxsom-java openjdk-11-jre openjdk-11-jre-headless perl-modules-5.32 perl-modules-5.36 python3.9 python3.9-minimal ucf Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-get', '-y', 'install', 'shovill=1.1.0-9'] 3m12.7s INFO: Running scripts post_install 3m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_install_exceptions'] 3m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_install_exceptions'] 3m12.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu'] 3m14.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu'] 3m14.3s INFO: /bin converted to /usr/bin by /usr merge 3m14.3s INFO: /lib converted to /usr/lib by /usr merge 3m14.3s INFO: /lib/init converted to /usr/lib/init by /usr merge 3m14.3s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 3m14.3s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 3m14.3s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 3m14.3s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 3m14.3s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 3m14.3s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 3m14.3s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 3m14.3s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 3m14.3s INFO: /lib64 converted to /usr/lib64 by /usr merge 3m14.3s INFO: /sbin converted to /usr/sbin by /usr merge 3m15.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', '-ac', '--ignore-obsolete'] 3m21.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', '-ac', '--ignore-obsolete'] 3m21.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 3m21.2s DUMP: 0.15.6 3m21.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 3m21.2s INFO: Running adequate version 0.15.6 now. 3m21.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'shovill'] 3m21.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'shovill'] 3m21.3s INFO: Running scripts pre_remove 3m21.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 3m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 3m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 3m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 3m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m28.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m28.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_remove_exceptions'] 3m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/pre_remove_exceptions'] 3m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m28.6s DUMP: install ok installed adduser adduser 3.137 install ok installed adwaita-icon-theme adwaita-icon-theme 46~beta-4 install ok installed ant ant 1.10.14-1 install ok installed ant-optional ant-optional 1.10.14-1 install ok installed apt apt 2.7.12 install ok installed at-spi2-common at-spi2-common 2.50.0-1 install ok installed bamtools bamtools 2.5.2+dfsg-5 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.39.3-6 install ok installed bwa bwa 0.7.17-7+b3 install ok installed bzip2 bzip2 1.0.8-5+b2 install ok installed ca-certificates ca-certificates 20240203 install ok installed ca-certificates-java ca-certificates-java 20240118 install ok installed coreutils coreutils 9.4-3+b1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.16 install ok installed default-jre default-jre 2:1.17-75 install ok installed default-jre-headless default-jre-headless 2:1.17-75 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.4 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed flash flash 1.2.11-2 install ok installed fontconfig fontconfig 2.15.0-1 install ok installed fontconfig-config fontconfig-config 2.15.0-1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed gcc-10-base:amd64 gcc-10-base 10.5.0-3 install ok installed gcc-12-base:amd64 gcc-12-base 12.3.0-14 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240201-3 install ok installed gcc-9-base:amd64 gcc-9-base 9.5.0-5 install ok installed gpgv gpgv 2.2.40-1.1+b1 install ok installed grep grep 3.11-4 install ok installed gtk-update-icon-cache gtk-update-icon-cache 3.24.41-1 install ok installed gzip gzip 1.12-1 install ok installed hicolor-icon-theme hicolor-icon-theme 0.17-2 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed java-common java-common 0.75 install ok installed java-wrappers java-wrappers 0.4 install ok installed kmc kmc 3.2.4+dfsg-1 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libactivation-java libactivation-java 1.2.0-2 install ok installed libaopalliance-java libaopalliance-java 20070526-7 install ok installed libapache-pom-java libapache-pom-java 29-2 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.12 install ok installed libargs4j-java libargs4j-java 2.33-2 install ok installed libasound2:amd64 libasound2 1.2.10-3 install ok installed libasound2-data libasound2-data 1.2.10-3 install ok installed libatinject-jsr330-api-java libatinject-jsr330-api-java 1.0+ds1-5 install ok installed libatk1.0-0:amd64 libatk1.0-0 2.50.0-1+b1 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2 install ok installed libavahi-client3:amd64 libavahi-client3 0.8-13+b1 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.8-13+b1 install ok installed libavahi-common3:amd64 libavahi-common3 0.8-13+b1 install ok installed libbamtools2.5.1:amd64 libbamtools2.5.1 2.5.1+dfsg-9 install ok installed libbamtools2.5.2:amd64 libbamtools2.5.2 2.5.2+dfsg-5 install ok installed libblkid1:amd64 libblkid1 2.39.3-6 install ok installed libboost-chrono1.74.0:amd64 libboost-chrono1.74.0 1.74.0+ds1-23+b1 install ok installed libboost-iostreams1.74.0:amd64 libboost-iostreams1.74.0 1.74.0+ds1-23+b1 install ok installed libboost-iostreams1.83.0:amd64 libboost-iostreams1.83.0 1.83.0-2+b2 install ok installed libboost-program-options1.74.0:amd64 libboost-program-options1.74.0 1.74.0+ds1-23+b1 install ok installed libboost-program-options1.83.0:amd64 libboost-program-options1.83.0 1.83.0-2+b2 install ok installed libboost-regex1.74.0:amd64 libboost-regex1.74.0 1.74.0+ds1-23+b1 install ok installed libboost-timer1.74.0:amd64 libboost-timer1.74.0 1.74.0+ds1-23+b1 install ok installed libboost-timer1.83.0:amd64 libboost-timer1.83.0 1.83.0-2+b2 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b3 install ok installed libbsd0:amd64 libbsd0 0.11.8-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b2 install ok installed libc-bin libc-bin 2.37-15 install ok installed libc6:amd64 libc6 2.37-15 install ok installed libcairo2:amd64 libcairo2 1.18.0-1+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcdi-api-java libcdi-api-java 1.2-3 install ok installed libcodemodel-java libcodemodel-java 2.6+jaxb2.3.0.1-10.1 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcommons-cli-java libcommons-cli-java 1.6.0-1 install ok installed libcommons-codec-java libcommons-codec-java 1.16.0-1 install ok installed libcommons-compress-java libcommons-compress-java 1.25.0-1 install ok installed libcommons-io-java libcommons-io-java 2.11.0-2 install ok installed libcommons-jexl2-java libcommons-jexl2-java 2.1.1-6 install ok installed libcommons-lang-java libcommons-lang-java 2.6-10 install ok installed libcommons-lang3-java libcommons-lang3-java 3.14.0-1 install ok installed libcommons-logging-java libcommons-logging-java 1.3.0-1 install ok installed libcommons-parent-java libcommons-parent-java 56-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libcups2:amd64 libcups2 2.4.7-1+b1 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 8.6.0-3 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-4+b1 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.14.10-4 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b1 install ok installed libdeflate0:amd64 libdeflate0 1.19-1 install ok installed libdom4j-java libdom4j-java 2.1.4-1 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.120-2 install ok installed libdrm-common libdrm-common 2.4.120-2 install ok installed libdrm-intel1:amd64 libdrm-intel1 2.4.120-2 install ok installed libdrm-nouveau2:amd64 libdrm-nouveau2 2.4.120-2 install ok installed libdrm-radeon1:amd64 libdrm-radeon1 2.4.120-2 install ok installed libdrm2:amd64 libdrm2 2.4.120-2 install ok installed libdtd-parser-java libdtd-parser-java 1.2-1 install ok installed libedit2:amd64 libedit2 3.1-20230828-1 install ok installed libelf1:amd64 libelf1 0.190-1+b1 install ok installed liberror-prone-java liberror-prone-java 2.18.0-1 install ok installed libexpat1:amd64 libexpat1 2.6.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libfastinfoset-java libfastinfoset-java 1.2.12-3 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-1 install ok installed libfreetype6:amd64 libfreetype6 2.13.2+dfsg-1+b1 install ok installed libfribidi0:amd64 libfribidi0 1.0.13-3+b1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240201-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-5+b1 install ok installed libgdbm6:amd64 libgdbm6 1.23-5+b1 install ok installed libgdk-pixbuf-2.0-0:amd64 libgdk-pixbuf-2.0-0 2.42.10+dfsg-3+b1 install ok installed libgdk-pixbuf2.0-common libgdk-pixbuf2.0-common 2.42.10+dfsg-3 install ok installed libgeronimo-annotation-1.3-spec-java libgeronimo-annotation-1.3-spec-java 1.3-1 install ok installed libgeronimo-interceptor-3.0-spec-java libgeronimo-interceptor-3.0-spec-java 1.0.1-4 install ok installed libgif7:amd64 libgif7 5.2.1-2.5+b1 install ok installed libgl1:amd64 libgl1 1.7.0-1 install ok installed libgl1-mesa-dri:amd64 libgl1-mesa-dri 24.0.1-1 install ok installed libglapi-mesa:amd64 libglapi-mesa 24.0.1-1 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.78.4-1 install ok installed libglvnd0:amd64 libglvnd0 1.7.0-1 install ok installed libglx-mesa0:amd64 libglx-mesa0 24.0.1-1 install ok installed libglx0:amd64 libglx0 1.7.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30:amd64 libgnutls30 3.8.3-1 install ok installed libgomp1:amd64 libgomp1 14-20240201-3 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-5+b1 install ok installed libgtk2.0-0:amd64 libgtk2.0-0 2.24.33-3 install ok installed libgtk2.0-common libgtk2.0-common 2.24.33-3 install ok installed libguava-java libguava-java 32.0.1-1 install ok installed libguice-java libguice-java 4.2.3-2 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 8.3.0-2 install ok installed libhat-trie0:amd64 libhat-trie0 0.1.2-3 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2+b1 install ok installed libhts3:amd64 libhts3 1.19+ds-1 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.6.0-1+b1 install ok installed libhtsjdk-java libhtsjdk-java 4.1.0+dfsg-1 install ok installed libhttpclient-java libhttpclient-java 4.5.14-1 install ok installed libhttpcore-java libhttpcore-java 4.4.16-1 install ok installed libicu67:amd64 libicu67 67.1-7 install ok installed libicu72:amd64 libicu72 72.1-4+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libistack-commons-java libistack-commons-java 3.0.6-5 install ok installed libjaxb-api-java libjaxb-api-java 2.3.1-1 install ok installed libjaxb-java libjaxb-java 2.3.0.1-10.1 install ok installed libjaxen-java libjaxen-java 1.1.6-4 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b1 install ok installed libjbzip2-java libjbzip2-java 0.9.1-8 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-2+b2 install ok installed libjsoncpp24:amd64 libjsoncpp24 1.9.4-4 install ok installed libjsoncpp25:amd64 libjsoncpp25 1.9.5-6+b2 install ok installed libjsoup-java libjsoup-java 1.15.3-1 install ok installed libjsr305-java libjsr305-java 0.1~+svn49-11 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-5+b1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-5+b1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-5+b1 install ok installed liblcms2-2:amd64 liblcms2-2 2.14-2+b1 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.57+dfsg-3+deb11u1 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-5+b3 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-4+b1 install ok installed libllvm11:amd64 libllvm11 1:11.0.1-2 install ok installed libllvm15:amd64 libllvm15 1:15.0.7-10 install ok installed libllvm17:amd64 libllvm17 1:17.0.6-5 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzma5:amd64 liblzma5 5.4.5-0.3 install ok installed libmaven-file-management-java libmaven-file-management-java 3.0.0-1 install ok installed libmaven-parent-java libmaven-parent-java 35-1 install ok installed libmaven-resolver-java libmaven-resolver-java 1.6.3-1 install ok installed libmaven-shared-io-java libmaven-shared-io-java 3.0.0-4 install ok installed libmaven-shared-utils-java libmaven-shared-utils-java 3.3.4-1 install ok installed libmaven3-core-java libmaven3-core-java 3.8.7-2 install ok installed libmbedcrypto3:amd64 libmbedcrypto3 2.16.9-0.1 install ok installed libmbedcrypto7:amd64 libmbedcrypto7 2.28.7-1 install ok installed libmbedtls12:amd64 libmbedtls12 2.16.9-0.1 install ok installed libmbedtls14:amd64 libmbedtls14 2.28.7-1 install ok installed libmbedx509-0:amd64 libmbedx509-0 2.16.9-0.1 install ok installed libmbedx509-1:amd64 libmbedx509-1 2.28.7-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmjson-java libmjson-java 1.4.0-3 install ok installed libmount1:amd64 libmount1 2.39.3-6 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-2 install ok installed libncbi-ngs3:amd64 libncbi-ngs3 3.0.3+dfsg-6 install ok installed libncbi-vdb3:amd64 libncbi-vdb3 3.0.2+dfsg-2 install ok installed libncurses6:amd64 libncurses6 6.4+20240113-1 install ok installed libncursesw6:amd64 libncursesw6 6.4+20240113-1 install ok installed libnettle8:amd64 libnettle8 3.9.1-2+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.59.0-1 install ok installed libngs-c++3:amd64 libngs-c++3 3.0.3+dfsg-6 install ok installed libngs-java:amd64 libngs-java 3.0.3+dfsg-6 install ok installed libngs-jni:amd64 libngs-jni 3.0.3+dfsg-6 install ok installed libngs-sdk-dev:amd64 libngs-sdk-dev 2.10.9-1 install ok installed libngs-sdk2:amd64 libngs-sdk2 2.10.9-1 install ok installed libnlopt0:amd64 libnlopt0 2.7.1-5+b2 install ok installed libnsl2:amd64 libnsl2 1.3.0-3 install ok installed libnspr4:amd64 libnspr4 2:4.35-1.1+b1 install ok installed libnss3:amd64 libnss3 2:3.98-1 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1+b1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1+b1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.51.0+ds-4 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.51.0+ds-4 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.51.0+ds-4 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libpcre3:amd64 libpcre3 2:8.39-15+b1 install ok installed libpcsclite1:amd64 libpcsclite1 2.0.1-1+b1 install ok installed libperl5.32:amd64 libperl5.32 5.32.1-4+deb11u3 install ok installed libperl5.36:amd64 libperl5.36 5.36.0-7+deb12u1 install ok installed libperl5.38:amd64 libperl5.38 5.38.2-3 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.42.2-1+b1 install ok installed libplexus-archiver-java libplexus-archiver-java 4.6.1-1 install ok installed libplexus-cipher-java libplexus-cipher-java 2.0-1 install ok installed libplexus-classworlds-java libplexus-classworlds-java 2.7.0-1 install ok installed libplexus-component-annotations-java libplexus-component-annotations-java 2.1.1-1 install ok installed libplexus-interpolation-java libplexus-interpolation-java 1.26-1 install ok installed libplexus-io-java libplexus-io-java 3.3.1-2 install ok installed libplexus-sec-dispatcher-java libplexus-sec-dispatcher-java 2.0-3 install ok installed libplexus-utils2-java libplexus-utils2-java 3.4.2-1 install ok installed libpng16-16:amd64 libpng16-16 1.6.42-1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-4 install ok installed libprocps8:amd64 libprocps8 2:3.3.17-5 install ok installed libpsl5:amd64 libpsl5 0.21.2-1+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.6-1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.8-1 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.8-1 install ok installed libpython3.12-minimal:amd64 libpython3.12-minimal 3.12.2-1 install ok installed libpython3.12-stdlib:amd64 libpython3.12-stdlib 3.12.2-1 install ok installed libpython3.9-minimal:amd64 libpython3.9-minimal 3.9.2-1 install ok installed libpython3.9-stdlib:amd64 libpython3.9-stdlib 3.9.2-1 install ok installed libreadline8:amd64 libreadline8 8.2-3 install ok installed librelaxng-datatype-java librelaxng-datatype-java 1.0+ds1-3.1 install ok installed librhino-java librhino-java 1.7.14-2.1 install ok installed librngom-java librngom-java 2.3.0.1-10.1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-4+b1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b2 install ok installed libsensors-config libsensors-config 1:3.6.0-8 install ok installed libsensors5:amd64 libsensors5 1:3.6.0-8+b1 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.3.2-0.4 install ok installed libsisu-inject-java libsisu-inject-java 0.3.4-2 install ok installed libsisu-plexus-java libsisu-plexus-java 0.3.4-3 install ok installed libslf4j-java libslf4j-java 1.7.32-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-6 install ok installed libsnappy-java libsnappy-java 1.1.10.5-1 install ok installed libsnappy-jni libsnappy-jni 1.1.10.5-1 install ok installed libsnappy1v5:amd64 libsnappy1v5 1.1.10-1+b1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.45.1-1 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssh2-1:amd64 libssh2-1 1.11.0-4 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libssl3:amd64 libssl3 3.1.5-1 install ok installed libssw0:amd64 libssw0 1.1-14 install ok installed libstax-ex-java libstax-ex-java 1.7.8-3 install ok installed libstdc++6:amd64 libstdc++6 14-20240201-3 install ok installed libstreambuffer-java libstreambuffer-java 1.5.4-1.1 install ok installed libsystemd0:amd64 libsystemd0 255.3-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libthai-data libthai-data 0.1.29-2 install ok installed libthai0:amd64 libthai0 0.1.29-2 install ok installed libtiff6:amd64 libtiff6 4.5.1+git230720-4 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.4+ds-1 install ok installed libtxw2-java libtxw2-java 2.3.0.1-10.1 install ok installed libudev1:amd64 libudev1 255.3-2 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.3-6 install ok installed libvulkan1:amd64 libvulkan1 1.3.275.0-1 install ok installed libwagon-http-java libwagon-http-java 3.5.3-1 install ok installed libwagon-provider-api-java libwagon-provider-api-java 3.5.3-1 install ok installed libwebp7:amd64 libwebp7 1.3.2-0.4 install ok installed libx11-6:amd64 libx11-6 2:1.8.7-1 install ok installed libx11-data libx11-data 2:1.8.7-1 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.8.7-1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb-dri2-0:amd64 libxcb-dri2-0 1.15-1 install ok installed libxcb-dri3-0:amd64 libxcb-dri3-0 1.15-1 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.15-1 install ok installed libxcb-present0:amd64 libxcb-present0 1.15-1 install ok installed libxcb-randr0:amd64 libxcb-randr0 1.15-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.15-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.15-1 install ok installed libxcb-sync1:amd64 libxcb-sync1 1.15-1 install ok installed libxcb-xfixes0:amd64 libxcb-xfixes0 1.15-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxcomposite1:amd64 libxcomposite1 1:0.4.5-1 install ok installed libxcursor1:amd64 libxcursor1 1:1.2.1-1 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.6-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxfixes3:amd64 libxfixes3 1:6.0.0-2 install ok installed libxi6:amd64 libxi6 2:1.8.1-1 install ok installed libxinerama1:amd64 libxinerama1 2:1.1.4-3 install ok installed libxml-commons-resolver1.1-java libxml-commons-resolver1.1-java 1.2-11 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3+b2 install ok installed libxrandr2:amd64 libxrandr2 2:1.5.2-2+b1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1 install ok installed libxshmfence1:amd64 libxshmfence1 1.3-1 install ok installed libxsom-java libxsom-java 2.3.0.1-10.1 install ok installed libxtst6:amd64 libxtst6 2:1.2.3-1.1 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.4-1+b2 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libxz-java libxz-java 1.9-1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-1 install ok installed libz3-4:amd64 libz3-4 4.8.12-3.1+b2 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed lighter lighter 1.1.2-7 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2+b1 install ok installed lsb-base lsb-base 11.6 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed media-types media-types 10.1.0 install ok installed megahit megahit 1.2.9-5 install ok installed mount mount 2.39.3-6 install ok installed ncbi-vdb-data ncbi-vdb-data 3.0.2+dfsg-2 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed netbase netbase 6.4 install ok installed openjdk-11-jre:amd64 openjdk-11-jre 11.0.22+7-2 install ok installed openjdk-11-jre-headless:amd64 openjdk-11-jre-headless 11.0.22+7-2 install ok installed openjdk-17-jre:amd64 openjdk-17-jre 17.0.10+7-1 install ok installed openjdk-17-jre-headless:amd64 openjdk-17-jre-headless 17.0.10+7-1 install ok installed openssl openssl 3.1.5-1 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl perl 5.38.2-3 install ok installed perl-base perl-base 5.38.2-3 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-4+deb11u3 install ok installed perl-modules-5.36 perl-modules-5.36 5.36.0-7+deb12u1 install ok installed perl-modules-5.38 perl-modules-5.38 5.38.2-3 install ok installed pigz pigz 2.8-1 install ok installed pilon pilon 1.24-3 install ok installed procps procps 2:4.0.4-4 install ok installed python3 python3 3.11.6-1 install ok installed python3-all python3-all 3.11.6-1 install ok installed python3-distutils python3-distutils 3.11.5-1 install ok installed python3-joblib python3-joblib 1.3.2-1 install ok installed python3-lib2to3 python3-lib2to3 3.11.5-1 install ok installed python3-minimal python3-minimal 3.11.6-1 install ok installed python3-packaging python3-packaging 23.2-1 install ok installed python3-pkg-resources python3-pkg-resources 68.1.2-2 install ok installed python3-yaml python3-yaml 6.0.1-2 install ok installed python3.11 python3.11 3.11.8-1 install ok installed python3.11-minimal python3.11-minimal 3.11.8-1 install ok installed python3.12 python3.12 3.12.2-1 install ok installed python3.12-minimal python3.12-minimal 3.12.2-1 install ok installed python3.9 python3.9 3.9.2-1 install ok installed python3.9-minimal python3.9-minimal 3.9.2-1 install ok installed readline-common readline-common 8.2-3 install ok installed samclip samclip 0.4.0-4 install ok installed samtools samtools 1.19.2-1 install ok installed scala-library scala-library 2.11.12-5 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.22 install ok installed seqtk seqtk 1.4-2 install ok installed shared-mime-info shared-mime-info 2.4-1 install ok installed shovill shovill 1.1.0-9 install ok installed skesa skesa 2.4.0-6+b2 install ok installed spades spades 3.15.5+dfsg-7 install ok installed sysvinit-utils sysvinit-utils 3.08-6 install ok installed tar tar 1.35+dfsg-3 install ok installed trimmomatic trimmomatic 0.39+dfsg-2 install ok installed tzdata tzdata 2024a-1 install ok installed ucf ucf 3.0043+nmu1 install ok installed unzip unzip 6.0-28 install ok installed usrmerge usrmerge 39 install ok installed util-linux util-linux 2.39.3-6 install ok installed util-linux-extra util-linux-extra 2.39.3-6 install ok installed velvet velvet 1.2.10+dfsg1-8 install ok installed x11-common x11-common 1:7.7+23 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3+b1 3m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-get', 'remove', 'adwaita-icon-theme', 'ant', 'ant-optional', 'at-spi2-common', 'bamtools', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'flash', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'java-common', 'java-wrappers', 'kmc', 'libactivation-java', 'libaopalliance-java', 'libapache-pom-java', 'libargs4j-java', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libatk1.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbamtools2.5.1:amd64', 'libbamtools2.5.2:amd64', 'libboost-chrono1.74.0:amd64', 'libboost-iostreams1.74.0:amd64', 'libboost-iostreams1.83.0:amd64', 'libboost-program-options1.74.0:amd64', 'libboost-program-options1.83.0:amd64', 'libboost-regex1.74.0:amd64', 'libboost-timer1.74.0:amd64', 'libboost-timer1.83.0:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcdi-api-java', 'libcodemodel-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdom4j-java', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libedit2:amd64', 'libelf1:amd64', 'liberror-prone-java', 'libexpat1:amd64', 'libfastinfoset-java', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgtk2.0-0:amd64', 'libgtk2.0-common', 'libguava-java', 'libguice-java', 'libharfbuzz0b:amd64', 'libhat-trie0:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libicu67:amd64', 'libicu72:amd64', 'libistack-commons-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjbig0:amd64', 'libjbzip2-java', 'libjpeg62-turbo:amd64', 'libjsoncpp24:amd64', 'libjsoncpp25:amd64', 'libjsoup-java', 'libjsr305-java', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libllvm11:amd64', 'libllvm15:amd64', 'libllvm17:amd64', 'libmaven-file-management-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto3:amd64', 'libmbedcrypto7:amd64', 'libmbedtls12:amd64', 'libmbedtls14:amd64', 'libmbedx509-0:amd64', 'libmbedx509-1:amd64', 'libmjson-java', 'libmpdec3:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libngs-c++3:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libngs-sdk-dev:amd64', 'libngs-sdk2:amd64', 'libnlopt0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-component-annotations-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpng16-16:amd64', 'libproc2-0:amd64', 'libprocps8:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'librelaxng-datatype-java', 'librhino-java', 'librngom-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsharpyuv0:amd64', 'libsisu-inject-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssw0:amd64', 'libstax-ex-java', 'libstreambuffer-java', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtxw2-java', 'libvulkan1:amd64', 'libwagon-http-java', 'libwagon-provider-api-java', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-commons-resolver1.1-java', 'libxml2:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxsom-java', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'lighter', 'media-types', 'megahit', 'ncbi-vdb-data', 'netbase', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openjdk-17-jre:amd64', 'openjdk-17-jre-headless:amd64', 'openssl', 'perl-modules-5.32', 'pigz', 'pilon', 'procps', 'python3', 'python3-all', 'python3-distutils', 'python3-joblib', 'python3-lib2to3', 'python3-minimal', 'python3-packaging', 'python3-pkg-resources', 'python3-yaml', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'python3.9', 'python3.9-minimal', 'readline-common', 'samclip', 'samtools', 'scala-library', 'sensible-utils', 'seqtk', 'shared-mime-info', 'skesa', 'spades', 'trimmomatic', 'ucf', 'unzip', 'velvet', 'x11-common', 'shovill'] 3m33.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: gcc-12-base libperl5.36 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: adwaita-icon-theme ant ant-optional at-spi2-common bamtools bwa bzip2 ca-certificates ca-certificates-java default-jre default-jre-headless flash fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme java-common java-wrappers kmc libactivation-java libaopalliance-java libapache-pom-java libargs4j-java libasound2 libasound2-data libatinject-jsr330-api-java libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libbamtools2.5.1 libbamtools2.5.2 libboost-chrono1.74.0 libboost-iostreams1.74.0 libboost-iostreams1.83.0 libboost-program-options1.74.0 libboost-program-options1.83.0 libboost-regex1.74.0 libboost-timer1.74.0 libboost-timer1.83.0 libbrotli1 libbsd0 libcairo2 libcdi-api-java libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java libcommons-logging-java libcommons-parent-java libcups2 libcurl3-gnutls libdatrie1 libdbus-1-3 libdeflate0 libdom4j-java libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdtd-parser-java libedit2 libelf1 liberror-prone-java libexpat1 libfastinfoset-java libfontconfig1 libfreetype6 libfribidi0 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libgtk2.0-0 libgtk2.0-common libguava-java libguice-java libharfbuzz0b libhat-trie0 libhts3 libhtscodecs2 libhtsjdk-java libhttpclient-java libhttpcore-java libicu67 libicu72 libistack-commons-java libjaxb-api-java libjaxb-java libjaxen-java libjbig0 libjbzip2-java libjpeg62-turbo libjsoncpp24 libjsoncpp25 libjsoup-java libjsr305-java liblcms2-2 libldap-2.4-2 libldap-2.5-0 liblerc4 libllvm11 libllvm15 libllvm17 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmbedcrypto3 libmbedcrypto7 libmbedtls12 libmbedtls14 libmbedx509-0 libmbedx509-1 libmjson-java libmpdec3 libncbi-ngs3 libncbi-vdb3 libncurses6 libncursesw6 libnghttp2-14 libngs-c++3 libngs-java libngs-jni libngs-sdk-dev libngs-sdk2 libnlopt0 libnspr4 libnss3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcsclite1 libperl5.32 libpixman-1-0 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libpng16-16 libproc2-0 libprocps8 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libpython3.9-minimal libpython3.9-stdlib libreadline8 librelaxng-datatype-java librhino-java librngom-java librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsharpyuv0 libsisu-inject-java libsisu-plexus-java libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libsqlite3-0 libssh2-1 libssw0 libstax-ex-java libstreambuffer-java libthai-data libthai0 libtiff6 libtxw2-java libvulkan1 libwagon-http-java libwagon-provider-api-java libwebp7 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml-commons-resolver1.1-java libxml2 libxrandr2 libxrender1 libxshmfence1 libxsom-java libxtst6 libxxf86vm1 libxz-java libyaml-0-2 libz3-4 lighter media-types megahit ncbi-vdb-data netbase openjdk-11-jre openjdk-11-jre-headless openjdk-17-jre openjdk-17-jre-headless openssl perl-modules-5.32 pigz pilon procps python3 python3-all python3-distutils python3-joblib python3-lib2to3 python3-minimal python3-packaging python3-pkg-resources python3-yaml python3.11 python3.11-minimal python3.12 python3.12-minimal python3.9 python3.9-minimal readline-common samclip samtools scala-library sensible-utils seqtk shared-mime-info shovill skesa spades trimmomatic ucf unzip velvet x11-common 0 upgraded, 0 newly installed, 281 to remove and 0 not upgraded. After this operation, 1184 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21613 files and directories currently installed.) Removing shovill (1.1.0-9) ... Removing trimmomatic (0.39+dfsg-2) ... Removing pilon (1.24-3) ... Removing default-jre (2:1.17-75) ... Removing openjdk-17-jre:amd64 (17.0.10+7-1) ... Removing libgtk2.0-0:amd64 (2.24.33-3) ... Removing adwaita-icon-theme (46~beta-4) ... Removing libjaxb-java (2.3.0.1-10.1) ... Removing libtxw2-java (2.3.0.1-10.1) ... Removing libatk1.0-0:amd64 (2.50.0-1+b1) ... Removing at-spi2-common (2.50.0-1) ... Removing spades (3.15.5+dfsg-7) ... Removing bamtools (2.5.2+dfsg-5) ... Removing bwa (0.7.17-7+b3) ... Removing megahit (1.2.9-5) ... Removing bzip2 (1.0.8-5+b2) ... Removing openjdk-11-jre:amd64 (11.0.22+7-2) ... Removing openjdk-11-jre-headless:amd64 (11.0.22+7-2) ... Removing default-jre-headless (2:1.17-75) ... Removing flash (1.2.11-2) ... Removing libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... Removing libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... Removing libpango-1.0-0:amd64 (1.51.0+ds-4) ... Removing fontconfig (2.15.0-1) ... Removing libcairo2:amd64 (1.18.0-1+b1) ... Removing gtk-update-icon-cache (3.24.41-1) ... Removing hicolor-icon-theme (0.17-2) ... Removing java-wrappers (0.4) ... Removing kmc (3.2.4+dfsg-1) ... Removing libfastinfoset-java (1.2.12-3) ... Removing libstreambuffer-java (1.5.4-1.1) ... Removing libstax-ex-java (1.7.8-3) ... Removing libjaxb-api-java (2.3.1-1) ... Removing libhtsjdk-java (4.1.0+dfsg-1) ... Removing libcommons-jexl2-java (2.1.1-6) ... Removing libbamtools2.5.1:amd64 (2.5.1+dfsg-9) ... Removing libbamtools2.5.2:amd64 (2.5.2+dfsg-5) ... Removing libboost-timer1.74.0:amd64 (1.74.0+ds1-23+b1) ... Removing libboost-chrono1.74.0:amd64 (1.74.0+ds1-23+b1) ... Removing libboost-iostreams1.74.0:amd64 (1.74.0+ds1-23+b1) ... Removing skesa (2.4.0-6+b2) ... Removing libboost-iostreams1.83.0:amd64 (1.83.0-2+b2) ... Removing libboost-program-options1.74.0:amd64 (1.74.0+ds1-23+b1) ... Removing libboost-program-options1.83.0:amd64 (1.83.0-2+b2) ... Removing libboost-regex1.74.0:amd64 (1.74.0+ds1-23+b1) ... Removing libboost-timer1.83.0:amd64 (1.83.0-2+b2) ... Removing samtools (1.19.2-1) ... Removing libhts3:amd64 (1.19+ds-1) ... Removing libcurl3-gnutls:amd64 (8.6.0-3) ... Removing libgl1:amd64 (1.7.0-1) ... Removing libglx0:amd64 (1.7.0-1) ... Removing libglx-mesa0:amd64 (24.0.1-1) ... Removing libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Removing libllvm11:amd64 (1:11.0.1-2) ... Removing libcommons-lang-java (2.6-10) ... Removing libthai0:amd64 (0.1.29-2) ... Removing libdatrie1:amd64 (0.2.13-3) ... Removing libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-3+b1) ... Removing libtiff6:amd64 (4.5.1+git230720-4) ... Removing libdeflate0:amd64 (1.19-1) ... Removing libgl1-mesa-dri:amd64 (24.0.1-1) ... Removing libdrm-amdgpu1:amd64 (2.4.120-2) ... Removing libdrm-radeon1:amd64 (2.4.120-2) ... Removing libdrm-nouveau2:amd64 (2.4.120-2) ... Removing libdrm-intel1:amd64 (2.4.120-2) ... Removing libdtd-parser-java (1.2-1) ... Removing libelf1:amd64 (0.190-1+b1) ... Removing python3.9 (3.9.2-1) ... Removing python3.9-minimal (3.9.2-1) ... Removing python3-all (3.11.6-1) ... Removing python3.12 (3.12.2-1) ... Removing python3.12-minimal (3.12.2-1) ... Removing libfribidi0:amd64 (1.0.13-3+b1) ... Removing libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... Removing libgif7:amd64 (5.2.1-2.5+b1) ... Removing libglapi-mesa:amd64 (24.0.1-1) ... Removing shared-mime-info (2.4-1) ... Removing libglvnd0:amd64 (1.7.0-1) ... Removing velvet (1.2.10+dfsg1-8) ... Removing libgomp1:amd64 (14-20240201-3) ... Removing libgtk2.0-common (2.24.33-3) ... Removing libhat-trie0:amd64 (0.1.2-3) ... Removing libhtscodecs2:amd64 (1.6.0-1+b1) ... Removing libicu67:amd64 (67.1-7) ... Removing libllvm17:amd64 (1:17.0.6-5) ... Removing libllvm15:amd64 (1:15.0.7-10) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Removing libicu72:amd64 (72.1-4+b1) ... Removing libjbig0:amd64 (2.1-6.1+b1) ... Removing libjbzip2-java (0.9.1-8) ... Removing libjsoncpp24:amd64 (1.9.4-4) ... Removing libjsoncpp25:amd64 (1.9.5-6+b2) ... Removing libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-5+b3) ... Removing liblerc4:amd64 (4.0.0+ds-4+b1) ... Removing libmbedtls12:amd64 (2.16.9-0.1) ... Removing libmbedx509-0:amd64 (2.16.9-0.1) ... Removing libmbedcrypto3:amd64 (2.16.9-0.1) ... Removing libngs-java:amd64 (3.0.3+dfsg-6) ... Removing libngs-jni:amd64 (3.0.3+dfsg-6) ... Removing libncbi-ngs3:amd64 (3.0.3+dfsg-6) ... Removing libncbi-vdb3:amd64 (3.0.2+dfsg-2) ... Removing libmbedtls14:amd64 (2.28.7-1) ... Removing libmbedx509-1:amd64 (2.28.7-1) ... Removing libmbedcrypto7:amd64 (2.28.7-1) ... Removing libmjson-java (1.4.0-3) ... Removing libpython3.9-stdlib:amd64 (3.9.2-1) ... Removing libmpdec3:amd64 (2.5.1-2) ... Removing libncurses6:amd64 (6.4+20240113-1) ... Removing libpython3.12-stdlib:amd64 (3.12.2-1) ... Removing python3-yaml (6.0.1-2) ... Removing python3-distutils (3.11.5-1) ... Removing libnghttp2-14:amd64 (1.59.0-1) ... Removing libngs-c++3:amd64 (3.0.3+dfsg-6) ... Removing libngs-sdk-dev:amd64 (2.10.9-1) ... Removing libngs-sdk2:amd64 (2.10.9-1) ... Removing libnlopt0:amd64 (2.7.1-5+b2) ... Removing libpciaccess0:amd64 (0.17-3) ... Removing libperl5.32:amd64 (5.32.1-4+deb11u3) ... Removing libpixman-1-0:amd64 (0.42.2-1+b1) ... Removing python3-joblib (1.3.2-1) ... Removing procps (2:4.0.4-4) ... Removing libproc2-0:amd64 (2:4.0.4-4) ... Removing libprocps8:amd64 (2:3.3.17-5) ... Removing libpsl5:amd64 (0.21.2-1+b1) ... Removing libpython3.12-minimal:amd64 (3.12.2-1) ... Removing libpython3.9-minimal:amd64 (3.9.2-1) ... Removing libxsom-java (2.3.0.1-10.1) ... Removing librngom-java (2.3.0.1-10.1) ... Removing librelaxng-datatype-java (1.0+ds1-3.1) ... Removing librhino-java (1.7.14-2.1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-4+b1) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-4+b1) ... Removing libsensors5:amd64 (1:3.6.0-8+b1) ... Removing libsensors-config (1:3.6.0-8) ... Removing libwebp7:amd64 (1.3.2-0.4) ... Removing libsharpyuv0:amd64 (1.3.2-0.4) ... Removing libssh2-1:amd64 (1.11.0-4) ... Removing libssw0:amd64 (1.1-14) ... Removing libthai-data (0.1.29-2) ... Removing libvulkan1:amd64 (1.3.275.0-1) ... Removing libx11-xcb1:amd64 (2:1.8.7-1) ... Removing libxcb-dri2-0:amd64 (1.15-1) ... Removing libxcb-dri3-0:amd64 (1.15-1) ... Removing libxcb-glx0:amd64 (1.15-1) ... Removing libxcb-present0:amd64 (1.15-1) ... Removing libxcb-randr0:amd64 (1.15-1) ... Removing libxcb-render0:amd64 (1.15-1) ... Removing libxcb-shm0:amd64 (1.15-1) ... Removing libxcb-sync1:amd64 (1.15-1) ... Removing libxcb-xfixes0:amd64 (1.15-1) ... Removing libxcomposite1:amd64 (1:0.4.5-1) ... Removing libxcursor1:amd64 (1:1.2.1-1) ... Removing libxdamage1:amd64 (1:1.1.6-1) ... Removing libxtst6:amd64 (2:1.2.3-1.1) ... Removing libxrandr2:amd64 (2:1.5.2-2+b1) ... Removing libxfixes3:amd64 (1:6.0.0-2) ... Removing libxi6:amd64 (2:1.8.1-1) ... Removing libxinerama1:amd64 (2:1.1.4-3) ... Removing libxml-commons-resolver1.1-java (1.2-11) ... Removing libxrender1:amd64 (1:0.9.10-1.1) ... Removing libxshmfence1:amd64 (1.3-1) ... Removing libyaml-0-2:amd64 (0.2.5-1) ... Removing libz3-4:amd64 (4.8.12-3.1+b2) ... Removing lighter (1.1.2-7) ... Removing ncbi-vdb-data (3.0.2+dfsg-2) ... Removing perl-modules-5.32 (5.32.1-4+deb11u3) ... Removing pigz (2.8-1) ... Removing python3-lib2to3 (3.11.5-1) ... Removing python3-packaging (23.2-1) ... Removing python3-pkg-resources (68.1.2-2) ... Removing samclip (0.4.0-4) ... Removing scala-library (2.11.12-5) ... Removing ucf (3.0043+nmu1) ... Removing sensible-utils (0.0.22) ... Removing seqtk (1.4-2) ... Removing unzip (6.0-28) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libedit2:amd64 (3.1-20230828-1) ... Removing libdrm2:amd64 (2.4.120-2) ... Removing libdrm-common (2.4.120-2) ... Removing python3 (3.11.6-1) ... Removing python3.11 (3.11.8-1) ... Removing libpython3-stdlib:amd64 (3.11.6-1) ... Removing python3-minimal (3.11.6-1) ... Removing python3.11-minimal (3.11.8-1) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing libx11-6:amd64 (2:1.8.7-1) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.8-1) ... Removing libpython3.11-stdlib:amd64 (3.11.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libncursesw6:amd64 (6.4+20240113-1) ... Removing libpython3.11-minimal:amd64 (3.11.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.2-3) ... Removing libx11-data (2:1.8.7-1) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-3) ... Removing libistack-commons-java (3.0.6-5) ... Removing ant-optional (1.10.14-1) ... Removing ant (1.10.14-1) ... Removing openjdk-17-jre-headless:amd64 (17.0.10+7-1) ... Removing ca-certificates-java (20240118) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libfontconfig1:amd64 (2.15.0-1) ... Removing fontconfig-config (2.15.0-1) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing java-common (0.75) ... Removing libactivation-java (1.2.0-2) ... Removing libmaven-file-management-java (3.0.0-1) ... Removing libmaven-shared-io-java (3.0.0-4) ... Removing libmaven3-core-java (3.8.7-2) ... Removing libguice-java (4.2.3-2) ... Removing libaopalliance-java (20070526-7) ... Removing libmaven-parent-java (35-1) ... Removing libargs4j-java (2.33-2) ... Removing libasound2:amd64 (1.2.10-3) ... Removing libasound2-data (1.2.10-3) ... Removing libplexus-sec-dispatcher-java (2.0-3) ... Removing libplexus-cipher-java (2.0-1) ... Removing libcups2:amd64 (2.4.7-1+b1) ... Removing libavahi-client3:amd64 (0.8-13+b1) ... Removing libavahi-common3:amd64 (0.8-13+b1) ... Removing libavahi-common-data:amd64 (0.8-13+b1) ... Removing libharfbuzz0b:amd64 (8.3.0-2) ... Removing libfreetype6:amd64 (2.13.2+dfsg-1+b1) ... Removing libbrotli1:amd64 (1.1.0-2+b3) ... Removing libsisu-plexus-java (0.3.4-3) ... Removing libsisu-inject-java (0.3.4-2) ... Removing libcdi-api-java (1.2-3) ... Removing libcommons-cli-java (1.6.0-1) ... Removing libwagon-http-java (3.5.3-1) ... Removing libhttpclient-java (4.5.14-1) ... Removing libcommons-codec-java (1.16.0-1) ... Removing libplexus-archiver-java (4.6.1-1) ... Removing libcommons-compress-java (1.25.0-1) ... Removing libplexus-io-java (3.3.1-2) ... Removing libmaven-shared-utils-java (3.3.4-1) ... Removing libcommons-io-java (2.11.0-2) ... Removing libmaven-resolver-java (1.6.3-1) ... Removing libcommons-lang3-java (3.14.0-1) ... Removing libdbus-1-3:amd64 (1.14.10-4) ... Removing libdom4j-java (2.1.4-1) ... Removing liberror-prone-java (2.18.0-1) ... Removing libguava-java (32.0.1-1) ... Removing libexpat1:amd64 (2.6.0-1) ... Removing libgeronimo-annotation-1.3-spec-java (1.3-1) ... Removing libgeronimo-interceptor-3.0-spec-java (1.0.1-4) ... Removing libglib2.0-0:amd64 (2.78.4-1) ... Removing libgraphite2-3:amd64 (1.3.14-2) ... Removing libhttpcore-java (4.4.16-1) ... Removing libjaxen-java (1.1.6-4) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-2+b2) ... Removing libjsoup-java (1.15.3-1) ... Removing libjsr305-java (0.1~+svn49-11) ... Removing liblcms2-2:amd64 (2.14-2+b1) ... Removing libnss3:amd64 (2:3.98-1) ... Removing libnspr4:amd64 (2:4.35-1.1+b1) ... Removing libpcsclite1:amd64 (2.0.1-1+b1) ... Removing libplexus-classworlds-java (2.7.0-1) ... Removing libplexus-component-annotations-java (2.1.1-1) ... Removing libplexus-interpolation-java (1.26-1) ... Removing libwagon-provider-api-java (3.5.3-1) ... Removing libplexus-utils2-java (3.4.2-1) ... Removing libpng16-16:amd64 (1.6.42-1) ... Removing libslf4j-java (1.7.32-1) ... Removing libsnappy-java (1.1.10.5-1) ... Removing libsnappy-jni (1.1.10.5-1) ... Removing libsnappy1v5:amd64 (1.1.10-1+b1) ... Removing libsqlite3-0:amd64 (3.45.1-1) ... Removing libxz-java (1.9-1) ... Removing openssl (3.1.5-1) ... Removing libcodemodel-java (2.6+jaxb2.3.0.1-10.1) ... Removing libcommons-logging-java (1.3.0-1) ... Removing libcommons-parent-java (56-1) ... Removing libapache-pom-java (29-2) ... Removing libatinject-jsr330-api-java (1.0+ds1-5) ... Processing triggers for libc-bin (2.37-15) ... 3m33.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-get', 'remove', 'adwaita-icon-theme', 'ant', 'ant-optional', 'at-spi2-common', 'bamtools', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'flash', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'java-common', 'java-wrappers', 'kmc', 'libactivation-java', 'libaopalliance-java', 'libapache-pom-java', 'libargs4j-java', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libatk1.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbamtools2.5.1:amd64', 'libbamtools2.5.2:amd64', 'libboost-chrono1.74.0:amd64', 'libboost-iostreams1.74.0:amd64', 'libboost-iostreams1.83.0:amd64', 'libboost-program-options1.74.0:amd64', 'libboost-program-options1.83.0:amd64', 'libboost-regex1.74.0:amd64', 'libboost-timer1.74.0:amd64', 'libboost-timer1.83.0:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcdi-api-java', 'libcodemodel-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdom4j-java', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libedit2:amd64', 'libelf1:amd64', 'liberror-prone-java', 'libexpat1:amd64', 'libfastinfoset-java', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgtk2.0-0:amd64', 'libgtk2.0-common', 'libguava-java', 'libguice-java', 'libharfbuzz0b:amd64', 'libhat-trie0:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libicu67:amd64', 'libicu72:amd64', 'libistack-commons-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjbig0:amd64', 'libjbzip2-java', 'libjpeg62-turbo:amd64', 'libjsoncpp24:amd64', 'libjsoncpp25:amd64', 'libjsoup-java', 'libjsr305-java', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libllvm11:amd64', 'libllvm15:amd64', 'libllvm17:amd64', 'libmaven-file-management-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto3:amd64', 'libmbedcrypto7:amd64', 'libmbedtls12:amd64', 'libmbedtls14:amd64', 'libmbedx509-0:amd64', 'libmbedx509-1:amd64', 'libmjson-java', 'libmpdec3:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libngs-c++3:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libngs-sdk-dev:amd64', 'libngs-sdk2:amd64', 'libnlopt0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-component-annotations-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpng16-16:amd64', 'libproc2-0:amd64', 'libprocps8:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'librelaxng-datatype-java', 'librhino-java', 'librngom-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsharpyuv0:amd64', 'libsisu-inject-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssw0:amd64', 'libstax-ex-java', 'libstreambuffer-java', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtxw2-java', 'libvulkan1:amd64', 'libwagon-http-java', 'libwagon-provider-api-java', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-commons-resolver1.1-java', 'libxml2:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxsom-java', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'lighter', 'media-types', 'megahit', 'ncbi-vdb-data', 'netbase', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openjdk-17-jre:amd64', 'openjdk-17-jre-headless:amd64', 'openssl', 'perl-modules-5.32', 'pigz', 'pilon', 'procps', 'python3', 'python3-all', 'python3-distutils', 'python3-joblib', 'python3-lib2to3', 'python3-minimal', 'python3-packaging', 'python3-pkg-resources', 'python3-yaml', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'python3.9', 'python3.9-minimal', 'readline-common', 'samclip', 'samtools', 'scala-library', 'sensible-utils', 'seqtk', 'shared-mime-info', 'skesa', 'spades', 'trimmomatic', 'ucf', 'unzip', 'velvet', 'x11-common', 'shovill'] 3m33.5s INFO: Running scripts post_remove 3m33.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_remove_exceptions'] 3m33.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_remove_exceptions'] 3m33.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'dpkg', '--purge', 'adwaita-icon-theme', 'ant', 'ant-optional', 'at-spi2-common', 'bamtools', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'flash', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'java-common', 'java-wrappers', 'kmc', 'libactivation-java', 'libaopalliance-java', 'libapache-pom-java', 'libargs4j-java', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libatk1.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbamtools2.5.1:amd64', 'libbamtools2.5.2:amd64', 'libboost-chrono1.74.0:amd64', 'libboost-iostreams1.74.0:amd64', 'libboost-iostreams1.83.0:amd64', 'libboost-program-options1.74.0:amd64', 'libboost-program-options1.83.0:amd64', 'libboost-regex1.74.0:amd64', 'libboost-timer1.74.0:amd64', 'libboost-timer1.83.0:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcdi-api-java', 'libcodemodel-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdom4j-java', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libedit2:amd64', 'libelf1:amd64', 'liberror-prone-java', 'libexpat1:amd64', 'libfastinfoset-java', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgtk2.0-0:amd64', 'libgtk2.0-common', 'libguava-java', 'libguice-java', 'libharfbuzz0b:amd64', 'libhat-trie0:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libicu67:amd64', 'libicu72:amd64', 'libistack-commons-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjbig0:amd64', 'libjbzip2-java', 'libjpeg62-turbo:amd64', 'libjsoncpp24:amd64', 'libjsoncpp25:amd64', 'libjsoup-java', 'libjsr305-java', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libllvm11:amd64', 'libllvm15:amd64', 'libllvm17:amd64', 'libmaven-file-management-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto3:amd64', 'libmbedcrypto7:amd64', 'libmbedtls12:amd64', 'libmbedtls14:amd64', 'libmbedx509-0:amd64', 'libmbedx509-1:amd64', 'libmjson-java', 'libmpdec3:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libngs-c++3:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libngs-sdk-dev:amd64', 'libngs-sdk2:amd64', 'libnlopt0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-component-annotations-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpng16-16:amd64', 'libproc2-0:amd64', 'libprocps8:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'librelaxng-datatype-java', 'librhino-java', 'librngom-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsharpyuv0:amd64', 'libsisu-inject-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssw0:amd64', 'libstax-ex-java', 'libstreambuffer-java', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtxw2-java', 'libvulkan1:amd64', 'libwagon-http-java', 'libwagon-provider-api-java', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-commons-resolver1.1-java', 'libxml2:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxsom-java', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'lighter', 'media-types', 'megahit', 'ncbi-vdb-data', 'netbase', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openjdk-17-jre:amd64', 'openjdk-17-jre-headless:amd64', 'openssl', 'perl-modules-5.32', 'pigz', 'pilon', 'procps', 'python3', 'python3-all', 'python3-distutils', 'python3-joblib', 'python3-lib2to3', 'python3-minimal', 'python3-packaging', 'python3-pkg-resources', 'python3-yaml', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'python3.9', 'python3.9-minimal', 'readline-common', 'samclip', 'samtools', 'scala-library', 'sensible-utils', 'seqtk', 'shared-mime-info', 'skesa', 'spades', 'trimmomatic', 'ucf', 'unzip', 'velvet', 'x11-common'] 3m34.2s DUMP: (Reading database ... 9555 files and directories currently installed.) Purging configuration files for adwaita-icon-theme (46~beta-4) ... dpkg: warning: ignoring request to remove ant which isn't installed dpkg: warning: ignoring request to remove ant-optional which isn't installed dpkg: warning: ignoring request to remove at-spi2-common which isn't installed dpkg: warning: ignoring request to remove bamtools which isn't installed dpkg: warning: ignoring request to remove bwa which isn't installed dpkg: warning: ignoring request to remove bzip2 which isn't installed Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates-java (20240118) ... dpkg: warning: ignoring request to remove default-jre which isn't installed dpkg: warning: ignoring request to remove default-jre-headless which isn't installed dpkg: warning: ignoring request to remove flash which isn't installed Purging configuration files for fontconfig (2.15.0-1) ... Purging configuration files for fontconfig-config (2.15.0-1) ... Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... dpkg: warning: ignoring request to remove gtk-update-icon-cache which isn't installed dpkg: warning: ignoring request to remove hicolor-icon-theme which isn't installed Purging configuration files for java-common (0.75) ... dpkg: warning: ignoring request to remove java-wrappers which isn't installed dpkg: warning: ignoring request to remove kmc which isn't installed dpkg: warning: ignoring request to remove libactivation-java which isn't installed dpkg: warning: ignoring request to remove libaopalliance-java which isn't installed dpkg: warning: ignoring request to remove libapache-pom-java which isn't installed dpkg: warning: ignoring request to remove libargs4j-java which isn't installed dpkg: warning: ignoring request to remove libasound2 which isn't installed dpkg: warning: ignoring request to remove libasound2-data which isn't installed dpkg: warning: ignoring request to remove libatinject-jsr330-api-java which isn't installed dpkg: warning: ignoring request to remove libatk1.0-0 which isn't installed dpkg: warning: ignoring request to remove libavahi-client3 which isn't installed dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed dpkg: warning: ignoring request to remove libavahi-common3 which isn't installed dpkg: warning: ignoring request to remove libbamtools2.5.1 which isn't installed dpkg: warning: ignoring request to remove libbamtools2.5.2 which isn't installed dpkg: warning: ignoring request to remove libboost-chrono1.74.0 which isn't installed dpkg: warning: ignoring request to remove libboost-iostreams1.74.0 which isn't installed dpkg: warning: ignoring request to remove libboost-iostreams1.83.0 which isn't installed dpkg: warning: ignoring request to remove libboost-program-options1.74.0 which isn't installed dpkg: warning: ignoring request to remove libboost-program-options1.83.0 which isn't installed dpkg: warning: ignoring request to remove libboost-regex1.74.0 which isn't installed dpkg: warning: ignoring request to remove libboost-timer1.74.0 which isn't installed dpkg: warning: ignoring request to remove libboost-timer1.83.0 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcdi-api-java which isn't installed dpkg: warning: ignoring request to remove libcodemodel-java which isn't installed dpkg: warning: ignoring request to remove libcommons-cli-java which isn't installed dpkg: warning: ignoring request to remove libcommons-codec-java which isn't installed dpkg: warning: ignoring request to remove libcommons-compress-java which isn't installed dpkg: warning: ignoring request to remove libcommons-io-java which isn't installed dpkg: warning: ignoring request to remove libcommons-jexl2-java which isn't installed dpkg: warning: ignoring request to remove libcommons-lang-java which isn't installed dpkg: warning: ignoring request to remove libcommons-lang3-java which isn't installed dpkg: warning: ignoring request to remove libcommons-logging-java which isn't installed dpkg: warning: ignoring request to remove libcommons-parent-java which isn't installed dpkg: warning: ignoring request to remove libcups2 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdbus-1-3 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdom4j-java which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm-intel1 which isn't installed dpkg: warning: ignoring request to remove libdrm-nouveau2 which isn't installed dpkg: warning: ignoring request to remove libdrm-radeon1 which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libdtd-parser-java which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libelf1 which isn't installed dpkg: warning: ignoring request to remove liberror-prone-java which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfastinfoset-java which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed Purging configuration files for libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-3+b1) ... dpkg: warning: ignoring request to remove libgdk-pixbuf2.0-common which isn't installed dpkg: warning: ignoring request to remove libgeronimo-annotation-1.3-spec-java which isn't installed dpkg: warning: ignoring request to remove libgeronimo-interceptor-3.0-spec-java which isn't installed dpkg: warning: ignoring request to remove libgif7 which isn't installed dpkg: warning: ignoring request to remove libgl1 which isn't installed Purging configuration files for libgl1-mesa-dri:amd64 (24.0.1-1) ... dpkg: warning: ignoring request to remove libglapi-mesa which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.78.4-1) ... dpkg: warning: ignoring request to remove libglvnd0 which isn't installed dpkg: warning: ignoring request to remove libglx-mesa0 which isn't installed dpkg: warning: ignoring request to remove libglx0 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed Purging configuration files for libgtk2.0-0:amd64 (2.24.33-3) ... Purging configuration files for libgtk2.0-common (2.24.33-3) ... dpkg: warning: ignoring request to remove libguava-java which isn't installed dpkg: warning: ignoring request to remove libguice-java which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhat-trie0 which isn't installed dpkg: warning: ignoring request to remove libhts3 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove libhtsjdk-java which isn't installed dpkg: warning: ignoring request to remove libhttpclient-java which isn't installed dpkg: warning: ignoring request to remove libhttpcore-java which isn't installed dpkg: warning: ignoring request to remove libicu67 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libistack-commons-java which isn't installed dpkg: warning: ignoring request to remove libjaxb-api-java which isn't installed dpkg: warning: ignoring request to remove libjaxb-java which isn't installed dpkg: warning: ignoring request to remove libjaxen-java which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjbzip2-java which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjsoncpp24 which isn't installed dpkg: warning: ignoring request to remove libjsoncpp25 which isn't installed dpkg: warning: ignoring request to remove libjsoup-java which isn't installed dpkg: warning: ignoring request to remove libjsr305-java which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove libllvm11 which isn't installed dpkg: warning: ignoring request to remove libllvm15 which isn't installed dpkg: warning: ignoring request to remove libllvm17 which isn't installed dpkg: warning: ignoring request to remove libmaven-file-management-java which isn't installed dpkg: warning: ignoring request to remove libmaven-parent-java which isn't installed dpkg: warning: ignoring request to remove libmaven-resolver-java which isn't installed dpkg: warning: ignoring request to remove libmaven-shared-io-java which isn't installed dpkg: warning: ignoring request to remove libmaven-shared-utils-java which isn't installed dpkg: warning: ignoring request to remove libmaven3-core-java which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto3 which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto7 which isn't installed dpkg: warning: ignoring request to remove libmbedtls12 which isn't installed dpkg: warning: ignoring request to remove libmbedtls14 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-0 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-1 which isn't installed dpkg: warning: ignoring request to remove libmjson-java which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libncbi-ngs3 which isn't installed dpkg: warning: ignoring request to remove libncbi-vdb3 which isn't installed dpkg: warning: ignoring request to remove libncurses6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libngs-c++3 which isn't installed dpkg: warning: ignoring request to remove libngs-java which isn't installed dpkg: warning: ignoring request to remove libngs-jni which isn't installed dpkg: warning: ignoring request to remove libngs-sdk-dev which isn't installed dpkg: warning: ignoring request to remove libngs-sdk2 which isn't installed dpkg: warning: ignoring request to remove libnlopt0 which isn't installed dpkg: warning: ignoring request to remove libnspr4 which isn't installed dpkg: warning: ignoring request to remove libnss3 which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libpcsclite1 which isn't installed dpkg: warning: ignoring request to remove libperl5.32 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libplexus-archiver-java which isn't installed dpkg: warning: ignoring request to remove libplexus-cipher-java which isn't installed dpkg: warning: ignoring request to remove libplexus-classworlds-java which isn't installed dpkg: warning: ignoring request to remove libplexus-component-annotations-java which isn't installed dpkg: warning: ignoring request to remove libplexus-interpolation-java which isn't installed dpkg: warning: ignoring request to remove libplexus-io-java which isn't installed dpkg: warning: ignoring request to remove libplexus-sec-dispatcher-java which isn't installed dpkg: warning: ignoring request to remove libplexus-utils2-java which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libproc2-0 which isn't installed dpkg: warning: ignoring request to remove libprocps8 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.8-1) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed Purging configuration files for libpython3.12-minimal:amd64 (3.12.2-1) ... dpkg: warning: ignoring request to remove libpython3.12-stdlib which isn't installed Purging configuration files for libpython3.9-minimal:amd64 (3.9.2-1) ... dpkg: warning: ignoring request to remove libpython3.9-stdlib which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librelaxng-datatype-java which isn't installed dpkg: warning: ignoring request to remove librhino-java which isn't installed dpkg: warning: ignoring request to remove librngom-java which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed Purging configuration files for libsensors-config (1:3.6.0-8) ... dpkg: warning: ignoring request to remove libsensors5 which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libsisu-inject-java which isn't installed dpkg: warning: ignoring request to remove libsisu-plexus-java which isn't installed dpkg: warning: ignoring request to remove libslf4j-java which isn't installed dpkg: warning: ignoring request to remove libsnappy-java which isn't installed dpkg: warning: ignoring request to remove libsnappy-jni which isn't installed dpkg: warning: ignoring request to remove libsnappy1v5 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libssw0 which isn't installed dpkg: warning: ignoring request to remove libstax-ex-java which isn't installed dpkg: warning: ignoring request to remove libstreambuffer-java which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed dpkg: warning: ignoring request to remove libtxw2-java which isn't installed dpkg: warning: ignoring request to remove libvulkan1 which isn't installed dpkg: warning: ignoring request to remove libwagon-http-java which isn't installed dpkg: warning: ignoring request to remove libwagon-provider-api-java which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libx11-xcb1 which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri2-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-dri3-0 which isn't installed dpkg: warning: ignoring request to remove libxcb-glx0 which isn't installed dpkg: warning: ignoring request to remove libxcb-present0 which isn't installed dpkg: warning: ignoring request to remove libxcb-randr0 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb-sync1 which isn't installed dpkg: warning: ignoring request to remove libxcb-xfixes0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxcomposite1 which isn't installed dpkg: warning: ignoring request to remove libxcursor1 which isn't installed dpkg: warning: ignoring request to remove libxdamage1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxfixes3 which isn't installed dpkg: warning: ignoring request to remove libxi6 which isn't installed dpkg: warning: ignoring request to remove libxinerama1 which isn't installed Purging configuration files for libxml-commons-resolver1.1-java (1.2-11) ... dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrandr2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxshmfence1 which isn't installed dpkg: warning: ignoring request to remove libxsom-java which isn't installed dpkg: warning: ignoring request to remove libxtst6 which isn't installed dpkg: warning: ignoring request to remove libxxf86vm1 which isn't installed dpkg: warning: ignoring request to remove libxz-java which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed dpkg: warning: ignoring request to remove lighter which isn't installed Purging configuration files for media-types (10.1.0) ... dpkg: warning: ignoring request to remove megahit which isn't installed dpkg: warning: ignoring request to remove ncbi-vdb-data which isn't installed Purging configuration files for netbase (6.4) ... dpkg: warning: ignoring request to remove openjdk-11-jre which isn't installed Purging configuration files for openjdk-11-jre-headless:amd64 (11.0.22+7-2) ... dpkg: warning: ignoring request to remove openjdk-17-jre which isn't installed Purging configuration files for openjdk-17-jre-headless:amd64 (17.0.10+7-1) ... Purging configuration files for openssl (3.1.5-1) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed dpkg: warning: ignoring request to remove pigz which isn't installed dpkg: warning: ignoring request to remove pilon which isn't installed Purging configuration files for procps (2:4.0.4-4) ... Purging configuration files for python3 (3.11.6-1) ... dpkg: warning: ignoring request to remove python3-all which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-joblib which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed Purging configuration files for python3.11-minimal (3.11.8-1) ... dpkg: warning: ignoring request to remove python3.12 which isn't installed Purging configuration files for python3.12-minimal (3.12.2-1) ... dpkg: warning: ignoring request to remove python3.9 which isn't installed Purging configuration files for python3.9-minimal (3.9.2-1) ... Purging configuration files for readline-common (8.2-3) ... dpkg: warning: ignoring request to remove samclip which isn't installed dpkg: warning: ignoring request to remove samtools which isn't installed dpkg: warning: ignoring request to remove scala-library which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed dpkg: warning: ignoring request to remove seqtk which isn't installed Purging configuration files for shared-mime-info (2.4-1) ... dpkg: warning: ignoring request to remove skesa which isn't installed dpkg: warning: ignoring request to remove spades which isn't installed dpkg: warning: ignoring request to remove trimmomatic which isn't installed Purging configuration files for ucf (3.0043+nmu1) ... Purging configuration files for unzip (6.0-28) ... dpkg: warning: ignoring request to remove velvet which isn't installed Purging configuration files for x11-common (1:7.7+23) ... dpkg: warning: while removing x11-common, directory '/etc/init.d' not empty so not removed 3m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'dpkg', '--purge', 'adwaita-icon-theme', 'ant', 'ant-optional', 'at-spi2-common', 'bamtools', 'bwa', 'bzip2', 'ca-certificates', 'ca-certificates-java', 'default-jre', 'default-jre-headless', 'flash', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'gtk-update-icon-cache', 'hicolor-icon-theme', 'java-common', 'java-wrappers', 'kmc', 'libactivation-java', 'libaopalliance-java', 'libapache-pom-java', 'libargs4j-java', 'libasound2:amd64', 'libasound2-data', 'libatinject-jsr330-api-java', 'libatk1.0-0:amd64', 'libavahi-client3:amd64', 'libavahi-common-data:amd64', 'libavahi-common3:amd64', 'libbamtools2.5.1:amd64', 'libbamtools2.5.2:amd64', 'libboost-chrono1.74.0:amd64', 'libboost-iostreams1.74.0:amd64', 'libboost-iostreams1.83.0:amd64', 'libboost-program-options1.74.0:amd64', 'libboost-program-options1.83.0:amd64', 'libboost-regex1.74.0:amd64', 'libboost-timer1.74.0:amd64', 'libboost-timer1.83.0:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcdi-api-java', 'libcodemodel-java', 'libcommons-cli-java', 'libcommons-codec-java', 'libcommons-compress-java', 'libcommons-io-java', 'libcommons-jexl2-java', 'libcommons-lang-java', 'libcommons-lang3-java', 'libcommons-logging-java', 'libcommons-parent-java', 'libcups2:amd64', 'libcurl3-gnutls:amd64', 'libdatrie1:amd64', 'libdbus-1-3:amd64', 'libdeflate0:amd64', 'libdom4j-java', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm-intel1:amd64', 'libdrm-nouveau2:amd64', 'libdrm-radeon1:amd64', 'libdrm2:amd64', 'libdtd-parser-java', 'libedit2:amd64', 'libelf1:amd64', 'liberror-prone-java', 'libexpat1:amd64', 'libfastinfoset-java', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdk-pixbuf-2.0-0:amd64', 'libgdk-pixbuf2.0-common', 'libgeronimo-annotation-1.3-spec-java', 'libgeronimo-interceptor-3.0-spec-java', 'libgif7:amd64', 'libgl1:amd64', 'libgl1-mesa-dri:amd64', 'libglapi-mesa:amd64', 'libglib2.0-0:amd64', 'libglvnd0:amd64', 'libglx-mesa0:amd64', 'libglx0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgtk2.0-0:amd64', 'libgtk2.0-common', 'libguava-java', 'libguice-java', 'libharfbuzz0b:amd64', 'libhat-trie0:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libhtsjdk-java', 'libhttpclient-java', 'libhttpcore-java', 'libicu67:amd64', 'libicu72:amd64', 'libistack-commons-java', 'libjaxb-api-java', 'libjaxb-java', 'libjaxen-java', 'libjbig0:amd64', 'libjbzip2-java', 'libjpeg62-turbo:amd64', 'libjsoncpp24:amd64', 'libjsoncpp25:amd64', 'libjsoup-java', 'libjsr305-java', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libllvm11:amd64', 'libllvm15:amd64', 'libllvm17:amd64', 'libmaven-file-management-java', 'libmaven-parent-java', 'libmaven-resolver-java', 'libmaven-shared-io-java', 'libmaven-shared-utils-java', 'libmaven3-core-java', 'libmbedcrypto3:amd64', 'libmbedcrypto7:amd64', 'libmbedtls12:amd64', 'libmbedtls14:amd64', 'libmbedx509-0:amd64', 'libmbedx509-1:amd64', 'libmjson-java', 'libmpdec3:amd64', 'libncbi-ngs3:amd64', 'libncbi-vdb3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libngs-c++3:amd64', 'libngs-java:amd64', 'libngs-jni:amd64', 'libngs-sdk-dev:amd64', 'libngs-sdk2:amd64', 'libnlopt0:amd64', 'libnspr4:amd64', 'libnss3:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpciaccess0:amd64', 'libpcsclite1:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libplexus-archiver-java', 'libplexus-cipher-java', 'libplexus-classworlds-java', 'libplexus-component-annotations-java', 'libplexus-interpolation-java', 'libplexus-io-java', 'libplexus-sec-dispatcher-java', 'libplexus-utils2-java', 'libpng16-16:amd64', 'libproc2-0:amd64', 'libprocps8:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libreadline8:amd64', 'librelaxng-datatype-java', 'librhino-java', 'librngom-java', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsensors-config', 'libsensors5:amd64', 'libsharpyuv0:amd64', 'libsisu-inject-java', 'libsisu-plexus-java', 'libslf4j-java', 'libsnappy-java', 'libsnappy-jni', 'libsnappy1v5:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssw0:amd64', 'libstax-ex-java', 'libstreambuffer-java', 'libthai-data', 'libthai0:amd64', 'libtiff6:amd64', 'libtxw2-java', 'libvulkan1:amd64', 'libwagon-http-java', 'libwagon-provider-api-java', 'libwebp7:amd64', 'libx11-6:amd64', 'libx11-data', 'libx11-xcb1:amd64', 'libxau6:amd64', 'libxcb-dri2-0:amd64', 'libxcb-dri3-0:amd64', 'libxcb-glx0:amd64', 'libxcb-present0:amd64', 'libxcb-randr0:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb-sync1:amd64', 'libxcb-xfixes0:amd64', 'libxcb1:amd64', 'libxcomposite1:amd64', 'libxcursor1:amd64', 'libxdamage1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxfixes3:amd64', 'libxi6:amd64', 'libxinerama1:amd64', 'libxml-commons-resolver1.1-java', 'libxml2:amd64', 'libxrandr2:amd64', 'libxrender1:amd64', 'libxshmfence1:amd64', 'libxsom-java', 'libxtst6:amd64', 'libxxf86vm1:amd64', 'libxz-java', 'libyaml-0-2:amd64', 'libz3-4:amd64', 'lighter', 'media-types', 'megahit', 'ncbi-vdb-data', 'netbase', 'openjdk-11-jre:amd64', 'openjdk-11-jre-headless:amd64', 'openjdk-17-jre:amd64', 'openjdk-17-jre-headless:amd64', 'openssl', 'perl-modules-5.32', 'pigz', 'pilon', 'procps', 'python3', 'python3-all', 'python3-distutils', 'python3-joblib', 'python3-lib2to3', 'python3-minimal', 'python3-packaging', 'python3-pkg-resources', 'python3-yaml', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'python3.9', 'python3.9-minimal', 'readline-common', 'samclip', 'samtools', 'scala-library', 'sensible-utils', 'seqtk', 'shared-mime-info', 'skesa', 'spades', 'trimmomatic', 'ucf', 'unzip', 'velvet', 'x11-common'] 3m34.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'dpkg', '--purge', 'shovill'] 3m34.2s DUMP: dpkg: warning: ignoring request to remove shovill which isn't installed 3m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'dpkg', '--purge', 'shovill'] 3m34.2s INFO: Running scripts post_purge 3m34.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_purge_exceptions'] 3m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_purge_exceptions'] 3m34.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'dpkg', '--purge', '--pending'] 3m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'dpkg', '--purge', '--pending'] 3m34.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'dpkg', '--remove', '--pending'] 3m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'dpkg', '--remove', '--pending'] 3m34.2s INFO: Running scripts post_test 3m34.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_test_exceptions'] 3m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'tmp/scripts/post_test_exceptions'] 3m34.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu'] 3m34.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu'] 3m34.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'dpkg-divert', '--list'] 3m34.9s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 3m34.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'dpkg-divert', '--list'] 3m34.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-get', 'clean'] 3m35.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu', 'apt-get', 'clean'] 3m35.1s DEBUG: Recording chroot state 3m36.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu/dev/shm'] 3m36.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu/dev/shm'] 3m36.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu/dev/console'] 3m37.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu/dev/console'] 3m37.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu/dev/ptmx'] 3m37.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu/dev/ptmx'] 3m37.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu/dev/pts'] 3m37.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu/dev/pts'] 3m37.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu/proc'] 3m37.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu/proc'] 3m37.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu'] 3m37.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpg85mmkgu'] 3m37.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpg85mmkgu 3m37.3s INFO: PASS: Upgrading between Debian distributions. 3m37.3s INFO: PASS: All tests. 3m37.3s INFO: piuparts run ends. ret=0 End: 2024-02-23 09:26:18 GMT