Start: 2025-10-21 21:50:55 GMT [stable] Package: toppic-common Source: toppic Version: 1.5.3+dfsg1-1 Installed-Size: 56336 Maintainer: The Debichem Group Architecture: all Depends: fonts-font-awesome, fonts-freefont-ttf, libjs-filesaver, libjs-bootstrap4, libjs-popper.js, libjs-jquery-ui, node-jquery Description: Top-down proteoform identification and characterization (common data) Homepage: http://proteomics.informatics.iupui.edu/software/toppic/index.html Description-md5: 38d72472bf94d4a506454a39f9fd75ae Section: science Priority: optional Filename: pool/main/t/toppic/toppic-common_1.5.3+dfsg1-1_all.deb Size: 18754620 MD5sum: 3295d191cf96b8e41749cb9c91950588 SHA256: 5b9f837825031e99098adbcde59a76d7e58f60a99081a8ff6cdaac47dc2b83c7 [testing] Package: toppic-common Source: toppic Version: 1.5.3+dfsg1-1 Installed-Size: 56336 Maintainer: The Debichem Group Architecture: all Depends: fonts-font-awesome, fonts-freefont-ttf, libjs-filesaver, libjs-bootstrap4, libjs-popper.js, libjs-jquery-ui, node-jquery Description: Top-down proteoform identification and characterization (common data) Homepage: http://proteomics.informatics.iupui.edu/software/toppic/index.html Description-md5: 38d72472bf94d4a506454a39f9fd75ae Section: science Priority: optional Filename: pool/main/t/toppic/toppic-common_1.5.3+dfsg1-1_all.deb Size: 18754620 MD5sum: 3295d191cf96b8e41749cb9c91950588 SHA256: 5b9f837825031e99098adbcde59a76d7e58f60a99081a8ff6cdaac47dc2b83c7 [sid] Package: toppic-common Source: toppic Version: 1.7.10+cleaned1-1 Installed-Size: 104546 Maintainer: The Debichem Group Architecture: all Depends: fonts-font-awesome, fonts-freefont-ttf, libjs-filesaver, libjs-bootstrap4, libjs-popper.js, libjs-jquery-ui, node-jquery Description: Top-down proteoform identification and characterization (common data) Homepage: http://proteomics.informatics.iupui.edu/software/toppic/index.html Description-md5: 38d72472bf94d4a506454a39f9fd75ae Section: science Priority: optional Filename: pool/main/t/toppic/toppic-common_1.7.10+cleaned1-1_all.deb Size: 84627432 MD5sum: 523b10826d9a7be99adcd44abea8b055 SHA256: d9fc64cd7c928b97daaa2325405a63e7e97b5882bfbd6a176b80450925018c79 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat --apt toppic-common=1.7.10+cleaned1-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211944~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat --apt toppic-common=1.7.10+cleaned1-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.1.0-40-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.153-1 (2025-09-20) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp_opa8h91 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp_opa8h91 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp_opa8h91/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp_opa8h91/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp_opa8h91/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp_opa8h91/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp_opa8h91/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp_opa8h91/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp_opa8h91/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp_opa8h91/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp_opa8h91/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp_opa8h91/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp_opa8h91/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp_opa8h91/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp_opa8h91/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-get', 'update'] 0m1.5s DUMP: Hit:1 http://deb.debian.org/debian trixie InRelease Reading package lists... 0m1.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-get', 'update'] 0m1.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-get', '-yf', 'dist-upgrade'] 0m2.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-get', '-yf', 'dist-upgrade'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.7s DUMP: cc6be03135582e5dd4c9ee869186ad39 - 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.7s INFO: Running scripts post_setup 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_setup_dummy_users'] 0m3.5s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_setup_dummy_users'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_setup_forbid_home'] 0m3.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_setup_forbid_home'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_setup_minimize'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_setup_minimize'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_setup_zz_backports'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_setup_zz_backports'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.6s DUMP: install ok installed apt apt 3.0.3 install ok installed base-files base-files 13.8+deb13u1 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2+b5 install ok installed bsdutils bsdutils 1:2.41-5 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69~deb13u1 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.3 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.41-5 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-5 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41-5 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1~deb13u1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41-5 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-7 install ok installed libssl3t64:amd64 libssl3t64 3.5.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.8-1~deb13u1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.8-1~deb13u1 install ok installed libuuid1:amd64 libuuid1 2.41-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.41-5 install ok installed login.defs login.defs 1:4.17.4-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41-5 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.1-1 install ok installed passwd passwd 1:4.17.4-2 install ok installed perl-base perl-base 5.40.1-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-4+deb13u1 install ok installed util-linux util-linux 2.41-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.6s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat 0m3.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_opa8h91'] 0m4.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_opa8h91'] 0m4.0s INFO: Running scripts is_testable 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/is_testable_uninstallable'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/is_testable_uninstallable'] 0m4.1s INFO: Running scripts pre_test 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_test_exceptions'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_test_exceptions'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_test_root_password'] 0m4.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_test_root_password'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-cache', 'show', '--no-all-versions', 'toppic-common'] 0m4.3s DUMP: Package: toppic-common Source: toppic Version: 1.5.3+dfsg1-1 Installed-Size: 56336 Maintainer: The Debichem Group Architecture: all Depends: fonts-font-awesome, fonts-freefont-ttf, libjs-filesaver, libjs-bootstrap4, libjs-popper.js, libjs-jquery-ui, node-jquery Description-en: Top-down proteoform identification and characterization (common data) The TopPIC Suite consists of four software tools for the interpretation of top-down mass spectrometry data: TopFD, TopPIC, TopMG, and TopDiff. . -TopFD (Top-down mass spectral Feature Detection) is a software tool for top-down spectral deconvolution and a successor to MS-Deconv. It groups top-down spectral peaks into isotopomer envelopes and converts isotopomer envelopes to monoisotopic neutral masses. In addition, it extracts proteoform features from LC-MS or CE-MS data. . -TopPIC (Top-down mass spectrometry based Proteoform Identification and Characterization) identifies and characterizes proteoforms at the proteome level by searching top-down tandem mass spectra against a protein sequence database. TopPIC is a successor to MS-Align+. It efficiently identifies proteoforms with unexpected alterations, such as mutations and post-translational modifications (PTMs), accurately estimates the statistical significance of identifications, and characterizes reported proteoforms with unknown mass shifts. It uses several techniques, such as indexes, spectral alignment, generation function methods, and the modification identification score (MIScore), to increase the speed, sensitivity, and accuracy. . -TopMG (Top-down mass spectrometry based proteoform identification using Mass Graphs) is a software tool for identifying ultra-modified proteoforms by searching top-down tandem mass spectra against a protein sequence database. It is capable of identifying proteoforms with multiple variable PTMs and unexpected alterations, such as histone proteoforms and phosphorylated ones. It uses mass graphs, which efficiently represent candidate proteoforms with multiple variable PTMs, to increase the speed and sensitivity in proteoform identification. In addition, approximate spectrum-based filtering methods are employed for protein sequence filtering, and a Markov chain Monte Carlo method (TopMCMC) is used for estimating the statistical significance of identifications. . -TopDiff (Top-down mass spectrometry-based identification of Differentially expressed proteoforms) compares the abundances of proteoforms and finds differentially expressed proteoforms by using identifications of top-down mass spectrometry data of several protein samples. . This package ships common data used by the various program in the toppic package and some documentation. Description-md5: 38d72472bf94d4a506454a39f9fd75ae Homepage: http://proteomics.informatics.iupui.edu/software/toppic/index.html Section: science Priority: optional Filename: pool/main/t/toppic/toppic-common_1.5.3+dfsg1-1_all.deb Size: 18754620 MD5sum: 3295d191cf96b8e41749cb9c91950588 SHA256: 5b9f837825031e99098adbcde59a76d7e58f60a99081a8ff6cdaac47dc2b83c7 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-cache', 'show', '--no-all-versions', 'toppic-common'] 0m4.3s INFO: apt-cache knows about the following packages: toppic-common 0m4.3s INFO: Running scripts pre_install 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_database-server'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_database-server'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_exceptions'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_exceptions'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_extras'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_extras'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-cache', 'policy'] 0m4.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release v=13.1,o=Debian,a=stable,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-cache', 'policy'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-cache', 'policy', 'toppic-common'] 0m4.4s DUMP: toppic-common: Installed: (none) Candidate: 1.5.3+dfsg1-1 Version table: 1.5.3+dfsg1-1 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-cache', 'policy', 'toppic-common'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-get', '-y', 'install', 'toppic-common'] 0m7.1s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: fonts-font-awesome fonts-freefont-ttf javascript-common libjs-bootstrap4 libjs-filesaver libjs-jquery libjs-jquery-ui libjs-popper.js node-jquery Suggested packages: apache2 | lighttpd | httpd libjs-jquery-ui-docs Recommended packages: libjs-sizzle The following NEW packages will be installed: fonts-font-awesome fonts-freefont-ttf javascript-common libjs-bootstrap4 libjs-filesaver libjs-jquery libjs-jquery-ui libjs-popper.js node-jquery toppic-common 0 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. Need to get 25.9 MB of archives. After this operation, 83.3 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 fonts-freefont-ttf all 20211204+svn4273-2 [5318 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 javascript-common all 12+nmu1 [4864 B] Get:4 http://deb.debian.org/debian trixie/main amd64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [519 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libjs-filesaver all 2.0.4+dfsg+~2.0.5-2 [9776 B] Get:7 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 node-jquery all 3.6.1+dfsg+~3.5.14-1 [160 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 toppic-common all 1.5.3+dfsg1-1 [18.8 MB] Fetched 25.9 MB in 0s (190 MB/s) Selecting previously unselected package fonts-font-awesome. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4939 files and directories currently installed.) Preparing to unpack .../0-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Selecting previously unselected package fonts-freefont-ttf. Preparing to unpack .../1-fonts-freefont-ttf_20211204+svn4273-2_all.deb ... Unpacking fonts-freefont-ttf (20211204+svn4273-2) ... Selecting previously unselected package javascript-common. Preparing to unpack .../2-javascript-common_12+nmu1_all.deb ... Unpacking javascript-common (12+nmu1) ... Selecting previously unselected package libjs-popper.js. Preparing to unpack .../3-libjs-popper.js_1.16.1+ds-6_all.deb ... Unpacking libjs-popper.js (1.16.1+ds-6) ... Selecting previously unselected package libjs-bootstrap4. Preparing to unpack .../4-libjs-bootstrap4_4.6.2+dfsg-1_all.deb ... Unpacking libjs-bootstrap4 (4.6.2+dfsg-1) ... Selecting previously unselected package libjs-filesaver. Preparing to unpack .../5-libjs-filesaver_2.0.4+dfsg+~2.0.5-2_all.deb ... Unpacking libjs-filesaver (2.0.4+dfsg+~2.0.5-2) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../6-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../7-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... Selecting previously unselected package node-jquery. Preparing to unpack .../8-node-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking node-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package toppic-common. Preparing to unpack .../9-toppic-common_1.5.3+dfsg1-1_all.deb ... Unpacking toppic-common (1.5.3+dfsg1-1) ... Setting up javascript-common (12+nmu1) ... Setting up libjs-popper.js (1.16.1+ds-6) ... Setting up fonts-freefont-ttf (20211204+svn4273-2) ... Setting up libjs-filesaver (2.0.4+dfsg+~2.0.5-2) ... Setting up libjs-bootstrap4 (4.6.2+dfsg-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up node-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up toppic-common (1.5.3+dfsg1-1) ... 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-get', '-y', 'install', 'toppic-common'] 0m7.1s INFO: Running scripts post_install 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_install_exceptions'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_install_exceptions'] 0m7.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_opa8h91'] 0m7.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_opa8h91'] 0m7.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp_opa8h91 to testing 0m7.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ forky main 0m7.6s INFO: Running scripts pre_distupgrade 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_distupgrade_exceptions'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_distupgrade_exceptions'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-get', 'update'] 0m9.5s DUMP: Get:1 http://deb.debian.org/debian forky InRelease [147 kB] Get:2 http://deb.debian.org/debian forky/main amd64 Packages [9680 kB] Get:3 http://deb.debian.org/debian forky/main Translation-en [6447 kB] Fetched 16.3 MB in 1s (14.0 MB/s) Reading package lists... 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-get', 'update'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-get', '-yf', 'dist-upgrade'] 0m14.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: gcc-15-base The following packages will be upgraded: apt base-files bash bsdutils diffutils fonts-freefont-ttf gcc-14-base grep init-system-helpers libapt-pkg7.0 libaudit-common libaudit1 libblkid1 libdb5.3t64 libgcc-s1 libgmp10 libhogweed6t64 libjs-jquery liblastlog2-2 liblzma5 libmount1 libnettle8t64 libpcre2-8-0 libsmartcols1 libsqlite3-0 libssl3t64 libstdc++6 libsystemd0 libudev1 libuuid1 libzstd1 login login.defs mount node-jquery openssl-provider-legacy passwd tzdata util-linux 39 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 23.1 MB of archives. After this operation, 751 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian forky/main amd64 base-files amd64 14 [72.9 kB] Get:2 http://deb.debian.org/debian forky/main amd64 bash amd64 5.3-1 [1556 kB] Get:3 http://deb.debian.org/debian forky/main amd64 diffutils amd64 1:3.12-1 [405 kB] Get:4 http://deb.debian.org/debian forky/main amd64 grep amd64 3.12-1 [443 kB] Get:5 http://deb.debian.org/debian forky/main amd64 liblastlog2-2 amd64 2.41.2-1 [28.9 kB] Get:6 http://deb.debian.org/debian forky/main amd64 libuuid1 amd64 2.41.2-1 [38.1 kB] Get:7 http://deb.debian.org/debian forky/main amd64 bsdutils amd64 1:2.41.2-1 [93.4 kB] Get:8 http://deb.debian.org/debian forky/main amd64 libblkid1 amd64 2.41.2-1 [173 kB] Get:9 http://deb.debian.org/debian forky/main amd64 libmount1 amd64 2.41.2-1 [211 kB] Get:10 http://deb.debian.org/debian forky/main amd64 libsmartcols1 amd64 2.41.2-1 [144 kB] Get:11 http://deb.debian.org/debian forky/main amd64 util-linux amd64 2.41.2-1 [1257 kB] Get:12 http://deb.debian.org/debian forky/main amd64 mount amd64 2.41.2-1 [162 kB] Get:13 http://deb.debian.org/debian forky/main amd64 libsqlite3-0 amd64 3.46.1-8 [968 kB] Get:14 http://deb.debian.org/debian forky/main amd64 libsystemd0 amd64 258.1-1 [467 kB] Get:15 http://deb.debian.org/debian forky/main amd64 gcc-15-base amd64 15.2.0-4 [52.8 kB] Get:16 http://deb.debian.org/debian forky/main amd64 libgcc-s1 amd64 15.2.0-4 [71.7 kB] Get:17 http://deb.debian.org/debian forky/main amd64 liblzma5 amd64 5.8.1-2 [310 kB] Get:18 http://deb.debian.org/debian forky/main amd64 openssl-provider-legacy amd64 3.5.4-1 [308 kB] Get:19 http://deb.debian.org/debian forky/main amd64 libzstd1 amd64 1.5.7+dfsg-2 [308 kB] Get:20 http://deb.debian.org/debian forky/main amd64 libssl3t64 amd64 3.5.4-1 [2446 kB] Get:21 http://deb.debian.org/debian forky/main amd64 libstdc++6 amd64 15.2.0-4 [738 kB] Get:22 http://deb.debian.org/debian forky/main amd64 libudev1 amd64 258.1-1 [156 kB] Get:23 http://deb.debian.org/debian forky/main amd64 libapt-pkg7.0 amd64 3.1.8 [1206 kB] Get:24 http://deb.debian.org/debian forky/main amd64 apt amd64 3.1.8 [1483 kB] Get:25 http://deb.debian.org/debian forky/main amd64 init-system-helpers all 1.69 [39.3 kB] Get:26 http://deb.debian.org/debian forky/main amd64 libaudit-common all 1:4.1.2-1 [14.3 kB] Get:27 http://deb.debian.org/debian forky/main amd64 libaudit1 amd64 1:4.1.2-1 [60.4 kB] Get:28 http://deb.debian.org/debian forky/main amd64 login amd64 1:4.16.0-2+really2.41.2-1 [105 kB] Get:29 http://deb.debian.org/debian forky/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-10 [709 kB] Get:30 http://deb.debian.org/debian forky/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5 [574 kB] Get:31 http://deb.debian.org/debian forky/main amd64 libnettle8t64 amd64 3.10.2-1 [307 kB] Get:32 http://deb.debian.org/debian forky/main amd64 libhogweed6t64 amd64 3.10.2-1 [336 kB] Get:33 http://deb.debian.org/debian forky/main amd64 libpcre2-8-0 amd64 10.46-1 [298 kB] Get:34 http://deb.debian.org/debian forky/main amd64 login.defs all 1:4.18.0-1 [211 kB] Get:35 http://deb.debian.org/debian forky/main amd64 passwd amd64 1:4.18.0-1 [1284 kB] Get:36 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get:37 http://deb.debian.org/debian forky/main amd64 fonts-freefont-ttf all 20211204+svn4273-4 [5318 kB] Get:38 http://deb.debian.org/debian forky/main amd64 gcc-14-base amd64 14.3.0-8 [52.1 kB] Get:39 http://deb.debian.org/debian forky/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get:40 http://deb.debian.org/debian forky/main amd64 node-jquery all 3.7.1+dfsg+~3.5.33-1 [159 kB] Preconfiguring packages ... Fetched 23.1 MB in 0s (125 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6587 files and directories currently installed.) Preparing to unpack .../base-files_14_amd64.deb ... Unpacking base-files (14) over (13.8+deb13u1) ... Setting up base-files (14) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6586 files and directories currently installed.) Preparing to unpack .../archives/bash_5.3-1_amd64.deb ... Unpacking bash (5.3-1) over (5.2.37-2+b5) ... Setting up bash (5.3-1) ... Installing new version of config file /etc/bash.bashrc ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6587 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.12-1_amd64.deb ... Unpacking diffutils (1:3.12-1) over (1:3.10-4) ... Setting up diffutils (1:3.12-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6587 files and directories currently installed.) Preparing to unpack .../archives/grep_3.12-1_amd64.deb ... Unpacking grep (3.12-1) over (3.11-4) ... Setting up grep (3.12-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6587 files and directories currently installed.) Preparing to unpack .../liblastlog2-2_2.41.2-1_amd64.deb ... Unpacking liblastlog2-2:amd64 (2.41.2-1) over (2.41-5) ... Setting up liblastlog2-2:amd64 (2.41.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6587 files and directories currently installed.) Preparing to unpack .../libuuid1_2.41.2-1_amd64.deb ... Unpacking libuuid1:amd64 (2.41.2-1) over (2.41-5) ... Setting up libuuid1:amd64 (2.41.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6587 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.41.2-1_amd64.deb ... Unpacking bsdutils (1:2.41.2-1) over (1:2.41-5) ... Setting up bsdutils (1:2.41.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6584 files and directories currently installed.) Preparing to unpack .../libblkid1_2.41.2-1_amd64.deb ... Unpacking libblkid1:amd64 (2.41.2-1) over (2.41-5) ... Setting up libblkid1:amd64 (2.41.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6584 files and directories currently installed.) Preparing to unpack .../libmount1_2.41.2-1_amd64.deb ... Unpacking libmount1:amd64 (2.41.2-1) over (2.41-5) ... Setting up libmount1:amd64 (2.41.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6584 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.41.2-1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.41.2-1) over (2.41-5) ... Setting up libsmartcols1:amd64 (2.41.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6584 files and directories currently installed.) Preparing to unpack .../util-linux_2.41.2-1_amd64.deb ... Unpacking util-linux (2.41.2-1) over (2.41-5) ... Setting up util-linux (2.41.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6590 files and directories currently installed.) Preparing to unpack .../mount_2.41.2-1_amd64.deb ... Unpacking mount (2.41.2-1) over (2.41-5) ... Preparing to unpack .../libsqlite3-0_3.46.1-8_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-8) over (3.46.1-7) ... Setting up libsqlite3-0:amd64 (3.46.1-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6590 files and directories currently installed.) Preparing to unpack .../libsystemd0_258.1-1_amd64.deb ... Unpacking libsystemd0:amd64 (258.1-1) over (257.8-1~deb13u1) ... Setting up libsystemd0:amd64 (258.1-1) ... Selecting previously unselected package gcc-15-base:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6590 files and directories currently installed.) Preparing to unpack .../gcc-15-base_15.2.0-4_amd64.deb ... Unpacking gcc-15-base:amd64 (15.2.0-4) ... Setting up gcc-15-base:amd64 (15.2.0-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6595 files and directories currently installed.) Preparing to unpack .../libgcc-s1_15.2.0-4_amd64.deb ... Unpacking libgcc-s1:amd64 (15.2.0-4) over (14.2.0-19) ... Setting up libgcc-s1:amd64 (15.2.0-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6595 files and directories currently installed.) Preparing to unpack .../liblzma5_5.8.1-2_amd64.deb ... Unpacking liblzma5:amd64 (5.8.1-2) over (5.8.1-1) ... Setting up liblzma5:amd64 (5.8.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6595 files and directories currently installed.) Preparing to unpack .../openssl-provider-legacy_3.5.4-1_amd64.deb ... Unpacking openssl-provider-legacy (3.5.4-1) over (3.5.1-1) ... Setting up openssl-provider-legacy (3.5.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6595 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.7+dfsg-2_amd64.deb ... Unpacking libzstd1:amd64 (1.5.7+dfsg-2) over (1.5.7+dfsg-1) ... Setting up libzstd1:amd64 (1.5.7+dfsg-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6595 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.5.4-1_amd64.deb ... Unpacking libssl3t64:amd64 (3.5.4-1) over (3.5.1-1) ... Setting up libssl3t64:amd64 (3.5.4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6595 files and directories currently installed.) Preparing to unpack .../libstdc++6_15.2.0-4_amd64.deb ... Unpacking libstdc++6:amd64 (15.2.0-4) over (14.2.0-19) ... Setting up libstdc++6:amd64 (15.2.0-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6595 files and directories currently installed.) Preparing to unpack .../libudev1_258.1-1_amd64.deb ... Unpacking libudev1:amd64 (258.1-1) over (257.8-1~deb13u1) ... Setting up libudev1:amd64 (258.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6595 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_3.1.8_amd64.deb ... Unpacking libapt-pkg7.0:amd64 (3.1.8) over (3.0.3) ... Setting up libapt-pkg7.0:amd64 (3.1.8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6595 files and directories currently installed.) Preparing to unpack .../archives/apt_3.1.8_amd64.deb ... Unpacking apt (3.1.8) over (3.0.3) ... Setting up apt (3.1.8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6593 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.69_all.deb ... Unpacking init-system-helpers (1.69) over (1.69~deb13u1) ... Setting up init-system-helpers (1.69) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6593 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a4.1.2-1_all.deb ... Unpacking libaudit-common (1:4.1.2-1) over (1:4.0.2-2) ... Setting up libaudit-common (1:4.1.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6593 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.1.2-1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.1.2-1) over (1:4.0.2-2+b2) ... Setting up libaudit1:amd64 (1:4.1.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6592 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.41.2-1_amd64.deb ... Unpacking login (1:4.16.0-2+really2.41.2-1) over (1:4.16.0-2+really2.41-5) ... Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-10_amd64.deb ... Unpacking libdb5.3t64:amd64 (5.3.28+dfsg2-10) over (5.3.28+dfsg2-9) ... Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6584 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-5_amd64.deb ... Unpacking libgmp10:amd64 (2:6.3.0+dfsg-5) over (2:6.3.0+dfsg-3) ... Setting up libgmp10:amd64 (2:6.3.0+dfsg-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6584 files and directories currently installed.) Preparing to unpack .../libnettle8t64_3.10.2-1_amd64.deb ... Unpacking libnettle8t64:amd64 (3.10.2-1) over (3.10.1-1) ... Setting up libnettle8t64:amd64 (3.10.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6584 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.10.2-1_amd64.deb ... Unpacking libhogweed6t64:amd64 (3.10.2-1) over (3.10.1-1) ... Setting up libhogweed6t64:amd64 (3.10.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6584 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.46-1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.46-1) over (10.46-1~deb13u1) ... Setting up libpcre2-8-0:amd64 (10.46-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6584 files and directories currently installed.) Preparing to unpack .../0-login.defs_1%3a4.18.0-1_all.deb ... Unpacking login.defs (1:4.18.0-1) over (1:4.17.4-2) ... Preparing to unpack .../1-passwd_1%3a4.18.0-1_amd64.deb ... Unpacking passwd (1:4.18.0-1) over (1:4.17.4-2) ... Preparing to unpack .../2-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) over (2025b-4+deb13u1) ... Preparing to unpack .../3-fonts-freefont-ttf_20211204+svn4273-4_all.deb ... Unpacking fonts-freefont-ttf (20211204+svn4273-4) over (20211204+svn4273-2) ... Preparing to unpack .../4-gcc-14-base_14.3.0-8_amd64.deb ... Unpacking gcc-14-base:amd64 (14.3.0-8) over (14.2.0-19) ... Preparing to unpack .../5-libjs-jquery_3.7.1+dfsg+~3.5.33-1_all.deb ... Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1) over (3.6.1+dfsg+~3.5.14-1) ... Preparing to unpack .../6-node-jquery_3.7.1+dfsg+~3.5.33-1_all.deb ... Unpacking node-jquery (3.7.1+dfsg+~3.5.33-1) over (3.6.1+dfsg+~3.5.14-1) ... Setting up gcc-14-base:amd64 (14.3.0-8) ... Setting up login.defs (1:4.18.0-1) ... Setting up fonts-freefont-ttf (20211204+svn4273-4) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Oct 21 21:51:10 UTC 2025. Universal Time is now: Tue Oct 21 21:51:10 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up passwd (1:4.18.0-1) ... Setting up mount (2.41.2-1) ... Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Setting up node-jquery (3.7.1+dfsg+~3.5.33-1) ... Setting up login (1:4.16.0-2+really2.41.2-1) ... Processing triggers for debianutils (5.23.2) ... Processing triggers for libc-bin (2.41-12) ... 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-get', '-yf', 'dist-upgrade'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m16.0s DUMP: eeb688fee9ae82dfcd44da9bb0d0404b - 0m16.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m16.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-cache', 'show', '--no-all-versions', 'toppic-common'] 0m16.2s DUMP: Package: toppic-common Source: toppic Version: 1.5.3+dfsg1-1 Installed-Size: 56336 Maintainer: The Debichem Group Architecture: all Depends: fonts-font-awesome, fonts-freefont-ttf, libjs-filesaver, libjs-bootstrap4, libjs-popper.js, libjs-jquery-ui, node-jquery Description-en: Top-down proteoform identification and characterization (common data) The TopPIC Suite consists of four software tools for the interpretation of top-down mass spectrometry data: TopFD, TopPIC, TopMG, and TopDiff. . -TopFD (Top-down mass spectral Feature Detection) is a software tool for top-down spectral deconvolution and a successor to MS-Deconv. It groups top-down spectral peaks into isotopomer envelopes and converts isotopomer envelopes to monoisotopic neutral masses. In addition, it extracts proteoform features from LC-MS or CE-MS data. . -TopPIC (Top-down mass spectrometry based Proteoform Identification and Characterization) identifies and characterizes proteoforms at the proteome level by searching top-down tandem mass spectra against a protein sequence database. TopPIC is a successor to MS-Align+. It efficiently identifies proteoforms with unexpected alterations, such as mutations and post-translational modifications (PTMs), accurately estimates the statistical significance of identifications, and characterizes reported proteoforms with unknown mass shifts. It uses several techniques, such as indexes, spectral alignment, generation function methods, and the modification identification score (MIScore), to increase the speed, sensitivity, and accuracy. . -TopMG (Top-down mass spectrometry based proteoform identification using Mass Graphs) is a software tool for identifying ultra-modified proteoforms by searching top-down tandem mass spectra against a protein sequence database. It is capable of identifying proteoforms with multiple variable PTMs and unexpected alterations, such as histone proteoforms and phosphorylated ones. It uses mass graphs, which efficiently represent candidate proteoforms with multiple variable PTMs, to increase the speed and sensitivity in proteoform identification. In addition, approximate spectrum-based filtering methods are employed for protein sequence filtering, and a Markov chain Monte Carlo method (TopMCMC) is used for estimating the statistical significance of identifications. . -TopDiff (Top-down mass spectrometry-based identification of Differentially expressed proteoforms) compares the abundances of proteoforms and finds differentially expressed proteoforms by using identifications of top-down mass spectrometry data of several protein samples. . This package ships common data used by the various program in the toppic package and some documentation. Description-md5: 38d72472bf94d4a506454a39f9fd75ae Homepage: http://proteomics.informatics.iupui.edu/software/toppic/index.html Section: science Priority: optional Filename: pool/main/t/toppic/toppic-common_1.5.3+dfsg1-1_all.deb Size: 18754620 MD5sum: 3295d191cf96b8e41749cb9c91950588 SHA256: 5b9f837825031e99098adbcde59a76d7e58f60a99081a8ff6cdaac47dc2b83c7 0m16.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-cache', 'show', '--no-all-versions', 'toppic-common'] 0m16.2s INFO: apt-cache knows about the following packages: toppic-common 0m16.2s INFO: Running scripts pre_install 0m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_database-server'] 0m16.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_database-server'] 0m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_exceptions'] 0m16.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_exceptions'] 0m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_extras'] 0m16.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_extras'] 0m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-cache', 'policy'] 0m16.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian forky/main amd64 Packages release o=Debian,a=testing,n=forky,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-cache', 'policy'] 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-cache', 'policy', 'toppic-common'] 0m16.3s DUMP: toppic-common: Installed: 1.5.3+dfsg1-1 Candidate: 1.5.3+dfsg1-1 Version table: *** 1.5.3+dfsg1-1 500 500 http://deb.debian.org/debian forky/main amd64 Packages 100 /var/lib/dpkg/status 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-cache', 'policy', 'toppic-common'] 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-get', '-y', 'install', 'toppic-common'] 0m16.9s DUMP: Reading package lists... Building dependency tree... Reading state information... toppic-common is already the newest version (1.5.3+dfsg1-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-get', '-y', 'install', 'toppic-common'] 0m16.9s INFO: Running scripts post_install 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_install_exceptions'] 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_install_exceptions'] 0m17.0s INFO: Running scripts post_distupgrade 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_distupgrade_exceptions'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_distupgrade_zz_backports'] 0m17.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_opa8h91'] 0m17.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_opa8h91'] 0m17.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp_opa8h91 to sid 0m17.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m17.3s INFO: Running scripts pre_distupgrade 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m17.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m17.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_distupgrade_exceptions'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_distupgrade_exceptions'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-get', 'update'] 0m19.9s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [207 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.2 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7455 kB] Fetched 17.9 MB in 2s (9756 kB/s) Reading package lists... 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-get', 'update'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-get', '-yf', 'dist-upgrade'] 0m24.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bsdutils gcc-15-base libblkid1 libgcc-s1 liblastlog2-2 libmount1 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libstdc++6 libuuid1 login login.defs mount passwd sysvinit-utils toppic-common util-linux 20 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 89.6 MB of archives. After this operation, 48.7 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.41.2-4 [38.7 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.41.2-4 [174 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.41.2-4 [211 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.41.2-4 [145 kB] Get:5 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.41.2-4 [1163 kB] Get:6 http://deb.debian.org/debian sid/main amd64 mount amd64 2.41.2-4 [163 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.9-2 [85.4 kB] Get:8 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.15-5 [34.8 kB] Get:9 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.41.2-4 [105 kB] Get:10 http://deb.debian.org/debian sid/main amd64 gcc-15-base amd64 15.2.0-5 [53.1 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 15.2.0-5 [736 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 15.2.0-5 [71.7 kB] Get:13 http://deb.debian.org/debian sid/main amd64 liblastlog2-2 amd64 2.41.2-4 [29.5 kB] Get:14 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.41.2-4 [93.5 kB] Get:15 http://deb.debian.org/debian sid/main amd64 login.defs all 1:4.18.0-2 [211 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.9-1 [7888 B] Get:17 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.9-2 [300 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.9-1 [96.8 kB] Get:19 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.18.0-2 [1286 kB] Get:20 http://deb.debian.org/debian sid/main amd64 toppic-common all 1.7.10+cleaned1-1 [84.6 MB] Fetched 89.6 MB in 0s (255 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6584 files and directories currently installed.) Preparing to unpack .../libuuid1_2.41.2-4_amd64.deb ... Unpacking libuuid1:amd64 (2.41.2-4) over (2.41.2-1) ... Setting up libuuid1:amd64 (2.41.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6584 files and directories currently installed.) Preparing to unpack .../libblkid1_2.41.2-4_amd64.deb ... Unpacking libblkid1:amd64 (2.41.2-4) over (2.41.2-1) ... Setting up libblkid1:amd64 (2.41.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6584 files and directories currently installed.) Preparing to unpack .../libmount1_2.41.2-4_amd64.deb ... Unpacking libmount1:amd64 (2.41.2-4) over (2.41.2-1) ... Setting up libmount1:amd64 (2.41.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6584 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.41.2-4_amd64.deb ... Unpacking libsmartcols1:amd64 (2.41.2-4) over (2.41.2-1) ... Setting up libsmartcols1:amd64 (2.41.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6584 files and directories currently installed.) Preparing to unpack .../util-linux_2.41.2-4_amd64.deb ... Unpacking util-linux (2.41.2-4) over (2.41.2-1) ... Setting up util-linux (2.41.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6549 files and directories currently installed.) Preparing to unpack .../mount_2.41.2-4_amd64.deb ... Unpacking mount (2.41.2-4) over (2.41.2-1) ... Preparing to unpack .../libselinux1_3.9-2_amd64.deb ... Unpacking libselinux1:amd64 (3.9-2) over (3.8.1-1) ... Setting up libselinux1:amd64 (3.9-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6551 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.15-5_amd64.deb ... Unpacking sysvinit-utils (3.15-5) over (3.14-4) ... Setting up sysvinit-utils (3.15-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6551 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.41.2-4_amd64.deb ... Unpacking login (1:4.16.0-2+really2.41.2-4) over (1:4.16.0-2+really2.41.2-1) ... Preparing to unpack .../gcc-15-base_15.2.0-5_amd64.deb ... Unpacking gcc-15-base:amd64 (15.2.0-5) over (15.2.0-4) ... Setting up gcc-15-base:amd64 (15.2.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6551 files and directories currently installed.) Preparing to unpack .../libstdc++6_15.2.0-5_amd64.deb ... Unpacking libstdc++6:amd64 (15.2.0-5) over (15.2.0-4) ... Setting up libstdc++6:amd64 (15.2.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6551 files and directories currently installed.) Preparing to unpack .../libgcc-s1_15.2.0-5_amd64.deb ... Unpacking libgcc-s1:amd64 (15.2.0-5) over (15.2.0-4) ... Setting up libgcc-s1:amd64 (15.2.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6551 files and directories currently installed.) Preparing to unpack .../liblastlog2-2_2.41.2-4_amd64.deb ... Unpacking liblastlog2-2:amd64 (2.41.2-4) over (2.41.2-1) ... Setting up liblastlog2-2:amd64 (2.41.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6551 files and directories currently installed.) Preparing to unpack .../0-bsdutils_1%3a2.41.2-4_amd64.deb ... Unpacking bsdutils (1:2.41.2-4) over (1:2.41.2-1) ... Preparing to unpack .../1-login.defs_1%3a4.18.0-2_all.deb ... Unpacking login.defs (1:4.18.0-2) over (1:4.18.0-1) ... Preparing to unpack .../2-libsemanage-common_3.9-1_all.deb ... Unpacking libsemanage-common (3.9-1) over (3.8.1-1) ... Preparing to unpack .../3-libsepol2_3.9-2_amd64.deb ... Unpacking libsepol2:amd64 (3.9-2) over (3.8.1-1) ... Preparing to unpack .../4-libsemanage2_3.9-1_amd64.deb ... Unpacking libsemanage2:amd64 (3.9-1) over (3.8.1-1) ... Preparing to unpack .../5-passwd_1%3a4.18.0-2_amd64.deb ... Unpacking passwd (1:4.18.0-2) over (1:4.18.0-1) ... Preparing to unpack .../6-toppic-common_1.7.10+cleaned1-1_all.deb ... Unpacking toppic-common (1.7.10+cleaned1-1) over (1.5.3+dfsg1-1) ... Setting up bsdutils (1:2.41.2-4) ... Setting up login.defs (1:4.18.0-2) ... Setting up toppic-common (1.7.10+cleaned1-1) ... Setting up libsemanage-common (3.9-1) ... Setting up libsepol2:amd64 (3.9-2) ... Setting up mount (2.41.2-4) ... Setting up libsemanage2:amd64 (3.9-1) ... Setting up login (1:4.16.0-2+really2.41.2-4) ... Setting up passwd (1:4.18.0-2) ... Processing triggers for libc-bin (2.41-12) ... 0m24.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-get', '-yf', 'dist-upgrade'] 0m24.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m24.4s DUMP: 2b054624736970d0081f58db25ad8035 - 0m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-cache', 'show', '--no-all-versions', 'toppic-common'] 0m24.7s DUMP: Package: toppic-common Source: toppic Version: 1.7.10+cleaned1-1 Installed-Size: 104546 Maintainer: The Debichem Group Architecture: all Depends: fonts-font-awesome, fonts-freefont-ttf, libjs-filesaver, libjs-bootstrap4, libjs-popper.js, libjs-jquery-ui, node-jquery Description-en: Top-down proteoform identification and characterization (common data) The TopPIC Suite consists of four software tools for the interpretation of top-down mass spectrometry data: TopFD, TopPIC, TopMG, and TopDiff. . -TopFD (Top-down mass spectral Feature Detection) is a software tool for top-down spectral deconvolution and a successor to MS-Deconv. It groups top-down spectral peaks into isotopomer envelopes and converts isotopomer envelopes to monoisotopic neutral masses. In addition, it extracts proteoform features from LC-MS or CE-MS data. . -TopPIC (Top-down mass spectrometry based Proteoform Identification and Characterization) identifies and characterizes proteoforms at the proteome level by searching top-down tandem mass spectra against a protein sequence database. TopPIC is a successor to MS-Align+. It efficiently identifies proteoforms with unexpected alterations, such as mutations and post-translational modifications (PTMs), accurately estimates the statistical significance of identifications, and characterizes reported proteoforms with unknown mass shifts. It uses several techniques, such as indexes, spectral alignment, generation function methods, and the modification identification score (MIScore), to increase the speed, sensitivity, and accuracy. . -TopMG (Top-down mass spectrometry based proteoform identification using Mass Graphs) is a software tool for identifying ultra-modified proteoforms by searching top-down tandem mass spectra against a protein sequence database. It is capable of identifying proteoforms with multiple variable PTMs and unexpected alterations, such as histone proteoforms and phosphorylated ones. It uses mass graphs, which efficiently represent candidate proteoforms with multiple variable PTMs, to increase the speed and sensitivity in proteoform identification. In addition, approximate spectrum-based filtering methods are employed for protein sequence filtering, and a Markov chain Monte Carlo method (TopMCMC) is used for estimating the statistical significance of identifications. . -TopDiff (Top-down mass spectrometry-based identification of Differentially expressed proteoforms) compares the abundances of proteoforms and finds differentially expressed proteoforms by using identifications of top-down mass spectrometry data of several protein samples. . This package ships common data used by the various program in the toppic package and some documentation. Description-md5: 38d72472bf94d4a506454a39f9fd75ae Homepage: http://proteomics.informatics.iupui.edu/software/toppic/index.html Section: science Priority: optional Filename: pool/main/t/toppic/toppic-common_1.7.10+cleaned1-1_all.deb Size: 84627432 MD5sum: 523b10826d9a7be99adcd44abea8b055 SHA256: d9fc64cd7c928b97daaa2325405a63e7e97b5882bfbd6a176b80450925018c79 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-cache', 'show', '--no-all-versions', 'toppic-common'] 0m24.7s INFO: apt-cache knows about the following packages: toppic-common 0m24.7s INFO: Running scripts pre_install 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_database-server'] 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_database-server'] 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_exceptions'] 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_exceptions'] 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_extras'] 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_extras'] 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_foreign_architecture'] 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_foreign_architecture'] 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-cache', 'policy'] 0m24.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m24.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-cache', 'policy'] 0m24.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-cache', 'policy', 'toppic-common'] 0m24.8s DUMP: toppic-common: Installed: 1.7.10+cleaned1-1 Candidate: 1.7.10+cleaned1-1 Version table: *** 1.7.10+cleaned1-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m24.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-cache', 'policy', 'toppic-common'] 0m24.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-get', '-y', 'install', 'toppic-common'] 0m25.2s DUMP: Reading package lists... Building dependency tree... Reading state information... toppic-common is already the newest version (1.7.10+cleaned1-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m25.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-get', '-y', 'install', 'toppic-common'] 0m25.2s INFO: Running scripts post_install 0m25.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_install_exceptions'] 0m25.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_install_exceptions'] 0m25.2s INFO: Running scripts post_distupgrade 0m25.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m25.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m25.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_distupgrade_exceptions'] 0m25.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_distupgrade_exceptions'] 0m25.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_distupgrade_zz_backports'] 0m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_distupgrade_zz_backports'] 0m25.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_opa8h91'] 0m25.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_opa8h91'] 0m25.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_opa8h91'] 0m25.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_opa8h91'] 0m25.8s INFO: Running scripts pre_install 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_database-server'] 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_database-server'] 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_exceptions'] 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_exceptions'] 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_extras'] 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_extras'] 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_foreign_architecture'] 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_foreign_architecture'] 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-cache', 'policy'] 0m25.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m25.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-cache', 'policy'] 0m25.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-cache', 'policy', 'toppic-common'] 0m25.9s DUMP: toppic-common: Installed: 1.7.10+cleaned1-1 Candidate: 1.7.10+cleaned1-1 Version table: *** 1.7.10+cleaned1-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m25.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-cache', 'policy', 'toppic-common'] 0m25.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-get', '-y', 'install', 'toppic-common=1.7.10+cleaned1-1'] 0m26.5s DUMP: Reading package lists... Building dependency tree... Reading state information... toppic-common is already the newest version (1.7.10+cleaned1-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-get', '-y', 'install', 'toppic-common=1.7.10+cleaned1-1'] 0m26.5s INFO: Running scripts post_install 0m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_install_exceptions'] 0m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_install_exceptions'] 0m26.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_opa8h91'] 0m26.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_opa8h91'] 0m27.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', '-ac', '--ignore-obsolete'] 0m27.8s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', '-ac', '--ignore-obsolete'] 0m27.8s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m27.8s DUMP: 0.15.9~deb12u1 0m27.8s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m27.8s INFO: Running adequate version 0.15.9~deb12u1 now. 0m27.8s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'toppic-common'] 0m27.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'toppic-common'] 0m27.9s INFO: Running scripts pre_remove 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m27.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m27.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m28.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m28.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_remove_exceptions'] 0m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/pre_remove_exceptions'] 0m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m28.6s DUMP: install ok installed apt apt 3.1.8 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.3-1 install ok installed bsdutils bsdutils 1:2.41.2-4 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed fonts-font-awesome fonts-font-awesome 5.0.10+really4.7.0~dfsg-4.1 install ok installed fonts-freefont-ttf fonts-freefont-ttf 20211204+svn4273-4 install ok installed gcc-14-base:amd64 gcc-14-base 14.3.0-8 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-5 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed javascript-common javascript-common 12+nmu1 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.8 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1 install ok installed libblkid1:amd64 libblkid1 2.41.2-4 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-5 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1 install ok installed libjs-bootstrap4 libjs-bootstrap4 4.6.2+dfsg-1 install ok installed libjs-filesaver libjs-filesaver 2.0.4+dfsg+~2.0.5-2 install ok installed libjs-jquery libjs-jquery 3.7.1+dfsg+~3.5.33-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libjs-popper.js libjs-popper.js 1.16.1+ds-6 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.2-4 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-2 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.2-4 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.9-2 install ok installed libsemanage-common libsemanage-common 3.9-1 install ok installed libsemanage2:amd64 libsemanage2 3.9-1 install ok installed libsepol2:amd64 libsepol2 3.9-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.2-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-8 install ok installed libssl3t64:amd64 libssl3t64 3.5.4-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-5 install ok installed libsystemd0:amd64 libsystemd0 258.1-1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 258.1-1 install ok installed libuuid1:amd64 libuuid1 2.41.2-4 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-2 install ok installed login login 1:4.16.0-2+really2.41.2-4 install ok installed login.defs login.defs 1:4.18.0-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41.2-4 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed node-jquery node-jquery 3.7.1+dfsg+~3.5.33-1 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.4-1 install ok installed passwd passwd 1:4.18.0-2 install ok installed perl-base perl-base 5.40.1-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.15-5 install ok installed tar tar 1.35+dfsg-3.1 install ok installed toppic-common toppic-common 1.7.10+cleaned1-1 install ok installed tzdata tzdata 2025b-5 install ok installed util-linux util-linux 2.41.2-4 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-get', 'remove', '--allow-remove-essential', 'fonts-font-awesome', 'fonts-freefont-ttf', 'javascript-common', 'libjs-bootstrap4', 'libjs-filesaver', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-popper.js', 'node-jquery', 'toppic-common'] 0m29.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: fonts-font-awesome fonts-freefont-ttf javascript-common libjs-bootstrap4 libjs-filesaver libjs-jquery libjs-jquery-ui libjs-popper.js node-jquery toppic-common 0 upgraded, 0 newly installed, 10 to remove and 0 not upgraded. After this operation, 133 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5796 files and directories currently installed.) Removing toppic-common (1.7.10+cleaned1-1) ... Removing fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Removing fonts-freefont-ttf (20211204+svn4273-4) ... Removing libjs-bootstrap4 (4.6.2+dfsg-1) ... Removing libjs-popper.js (1.16.1+ds-6) ... Removing javascript-common (12+nmu1) ... Removing libjs-filesaver (2.0.4+dfsg+~2.0.5-2) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Removing node-jquery (3.7.1+dfsg+~3.5.33-1) ... 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-get', 'remove', '--allow-remove-essential', 'fonts-font-awesome', 'fonts-freefont-ttf', 'javascript-common', 'libjs-bootstrap4', 'libjs-filesaver', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-popper.js', 'node-jquery', 'toppic-common'] 0m29.5s INFO: Running scripts post_remove 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_remove_exceptions'] 0m29.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_remove_exceptions'] 0m29.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'dpkg', '--purge', 'fonts-font-awesome', 'fonts-freefont-ttf', 'javascript-common', 'libjs-bootstrap4', 'libjs-filesaver', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-popper.js', 'node-jquery'] 0m29.7s DUMP: (Reading database ... 4909 files and directories currently installed.) Purging configuration files for fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... dpkg: warning: ignoring request to remove fonts-freefont-ttf which isn't installed Purging configuration files for javascript-common (12+nmu1) ... Purging configuration files for libjs-bootstrap4 (4.6.2+dfsg-1) ... dpkg: warning: ignoring request to remove libjs-filesaver which isn't installed Purging configuration files for libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... dpkg: warning: ignoring request to remove libjs-jquery-ui which isn't installed Purging configuration files for libjs-popper.js (1.16.1+ds-6) ... dpkg: warning: ignoring request to remove node-jquery which isn't installed 0m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'dpkg', '--purge', 'fonts-font-awesome', 'fonts-freefont-ttf', 'javascript-common', 'libjs-bootstrap4', 'libjs-filesaver', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-popper.js', 'node-jquery'] 0m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'dpkg', '--purge', 'toppic-common'] 0m29.7s DUMP: dpkg: warning: ignoring request to remove toppic-common which isn't installed 0m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'dpkg', '--purge', 'toppic-common'] 0m29.7s INFO: Running scripts post_purge 0m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_purge_exceptions'] 0m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_purge_exceptions'] 0m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'dpkg', '--purge', '--pending'] 0m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'dpkg', '--purge', '--pending'] 0m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'dpkg', '--remove', '--pending'] 0m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'dpkg', '--remove', '--pending'] 0m29.7s INFO: Running scripts post_test 0m29.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_test_exceptions'] 0m29.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'tmp/scripts/post_test_exceptions'] 0m29.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_opa8h91'] 0m30.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp_opa8h91'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'dpkg-divert', '--list'] 0m30.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'dpkg-divert', '--list'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-get', 'clean'] 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp_opa8h91', 'apt-get', 'clean'] 0m30.1s DEBUG: Recording chroot state 0m30.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_opa8h91/dev/shm'] 0m30.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_opa8h91/dev/shm'] 0m30.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_opa8h91/dev/console'] 0m30.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_opa8h91/dev/console'] 0m30.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_opa8h91/dev/ptmx'] 0m31.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_opa8h91/dev/ptmx'] 0m31.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_opa8h91/dev/pts'] 0m31.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_opa8h91/dev/pts'] 0m31.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp_opa8h91/proc'] 0m31.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp_opa8h91/proc'] 0m31.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp_opa8h91'] 0m31.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp_opa8h91'] 0m31.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp_opa8h91 0m31.1s INFO: PASS: Upgrading between Debian distributions. 0m31.1s INFO: PASS: All tests. 0m31.1s INFO: piuparts run ends. ret=0 End: 2025-10-21 21:51:27 GMT