Start: 2024-08-23 18:22:43 GMT [stable] Package: xpore Version: 2.1-1 Installed-Size: 146 Maintainer: Debian Med Packaging Team Architecture: all Depends: pyensembl, python3-h5py-serial, python3-numpy, python3-pandas, python3-scipy, python3-ujson, python3-yaml, python3:any Suggests: xpore-doc Description: Nanopore analysis of differential RNA modifications Homepage: https://github.com/GoekeLab/xpore/ Description-md5: 0493c5291452f14d39a3ce9aeea20ba2 Section: science Priority: optional Filename: pool/main/x/xpore/xpore_2.1-1_all.deb Size: 30508 MD5sum: f5d86939b2152015c9690599fd5436af SHA256: 5af28afa9e5d8321b17a7a425a28f58bf29e618743d6a696a0a93cf70cde3322 [testing] Package: xpore Version: 2.1-2 Installed-Size: 160 Maintainer: Debian Med Packaging Team Architecture: all Depends: pyensembl, python3-h5py, python3-numpy, python3-pandas, python3-scipy, python3-ujson, python3-yaml, python3:any Suggests: xpore-doc Description: Nanopore analysis of differential RNA modifications Homepage: https://github.com/GoekeLab/xpore/ Description-md5: 0493c5291452f14d39a3ce9aeea20ba2 Section: science Priority: optional Filename: pool/main/x/xpore/xpore_2.1-2_all.deb Size: 34744 MD5sum: 5bd8c47a037fe2c4c8ab7e0ea8cc93dc SHA256: 8f56089b74752a027e9d7280e42584548f8c3d543b98c89f1e191c2d2799ba8e [sid] Package: xpore Version: 2.1-2 Installed-Size: 160 Maintainer: Debian Med Packaging Team Architecture: all Depends: pyensembl, python3-h5py, python3-numpy, python3-pandas, python3-scipy, python3-ujson, python3-yaml, python3:any Suggests: xpore-doc Description: Nanopore analysis of differential RNA modifications Homepage: https://github.com/GoekeLab/xpore/ Description-md5: 0493c5291452f14d39a3ce9aeea20ba2 Section: science Priority: optional Filename: pool/main/x/xpore/xpore_2.1-2_all.deb Size: 34744 MD5sum: 5bd8c47a037fe2c4c8ab7e0ea8cc93dc SHA256: 8f56089b74752a027e9d7280e42584548f8c3d543b98c89f1e191c2d2799ba8e Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat --apt xpore=2.1-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.4~202408201135~1.4.3-10-g39df1906 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz -d stable -d testing -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat --apt xpore=2.1-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-32-amd64 #1 SMP Debian 5.10.223-1 (2024-08-10) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpb04q5riy 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpb04q5riy 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m1.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bookworm-merged-usr_amd64.tar.gz'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpb04q5riy/proc'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpb04q5riy/proc'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpb04q5riy/dev/pts'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpb04q5riy/dev/pts'] 0m1.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpb04q5riy/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpb04q5riy/dev/ptmx'] 0m1.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpb04q5riy/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpb04q5riy/dev/ptmx'] 0m1.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpb04q5riy/dev/console'] 0m1.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpb04q5riy/dev/console'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpb04q5riy/dev/shm'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpb04q5riy/dev/shm'] 0m1.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ bookworm main 0m1.3s DEBUG: Created policy-rc.d and chmodded it. 0m1.3s DEBUG: Created resolv.conf. 0m1.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpb04q5riy/tmp/scripts/ 0m1.4s INFO: Running scripts post_chroot_unpack 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-get', 'update'] 0m2.7s DUMP: Hit:1 http://deb.debian.org/debian bookworm InRelease Reading package lists... 0m2.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-get', 'update'] 0m2.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-get', '-yf', 'dist-upgrade'] 0m3.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-get', '-yf', 'dist-upgrade'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.7s DUMP: 913e17be84ed63a3110ce3137c1d003a - 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.7s INFO: Running scripts post_setup 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_setup_dummy_users'] 0m4.9s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_setup_dummy_users'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_setup_forbid_home'] 0m4.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_setup_forbid_home'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_setup_minimize'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_setup_minimize'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_setup_zz_backports'] 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_setup_zz_backports'] 0m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.0s DUMP: install ok installed adduser adduser 3.134 install ok installed apt apt 2.6.1 install ok installed base-files base-files 12.4+deb12u6 install ok installed base-passwd base-passwd 3.6.1 install ok installed bash bash 5.2.15-2+b7 install ok installed bsdutils bsdutils 1:2.38.1-5+deb12u1 install ok installed coreutils coreutils 9.1-1 install ok installed dash dash 0.5.12-2 install ok installed debconf debconf 1.5.82 install ok installed debian-archive-keyring debian-archive-keyring 2023.3+deb12u1 install ok installed debianutils debianutils 5.7-0.5~deb12u1 install ok installed diffutils diffutils 1:3.8-4 install ok installed dpkg dpkg 1.21.22 install ok installed e2fsprogs e2fsprogs 1.47.0-2 install ok installed findutils findutils 4.9.0-4 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-14 install ok installed gpgv gpgv 2.2.40-1.1 install ok installed grep grep 3.8-5 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu1 install ok installed init-system-helpers init-system-helpers 1.65.2 install ok installed libacl1:amd64 libacl1 2.3.1-3 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.6.1 install ok installed libattr1:amd64 libattr1 1:2.5.1-4 install ok installed libaudit-common libaudit-common 1:3.0.9-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.9-1 install ok installed libblkid1:amd64 libblkid1 2.38.1-5+deb12u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b1 install ok installed libc-bin libc-bin 2.36-9+deb12u7 install ok installed libc6:amd64 libc6 2.36-9+deb12u7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b3 install ok installed libcap2:amd64 libcap2 1:2.66-4 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.33-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.270 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2 install ok installed libffi8:amd64 libffi8 3.4.4-1 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-14 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-3 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1.1 install ok installed libgnutls30:amd64 libgnutls30 3.7.9-2+deb12u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.46-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.4.1-0.2 install ok installed libmd0:amd64 libmd0 1.0.4-2 install ok installed libmount1:amd64 libmount1 2.38.1-5+deb12u1 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-6+deb12u1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-6+deb12u1 install ok installed libpam-runtime libpam-runtime 1.5.2-6+deb12u1 install ok installed libpam0g:amd64 libpam0g 1.5.2-6+deb12u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+deb12u1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b6 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b5 install ok installed libsepol2:amd64 libsepol2 3.4-2.1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-5+deb12u1 install ok installed libss2:amd64 libss2 1.47.0-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-14 install ok installed libsystemd0:amd64 libsystemd0 252.26-1~deb12u2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.4-4 install ok installed libudev1:amd64 libudev1 252.26-1~deb12u2 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libuuid1:amd64 libuuid1 2.38.1-5+deb12u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.4+dfsg2-5 install ok installed login login 1:4.13+dfsg1-1+b1 install ok installed logsave logsave 1.47.0-2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-5+deb12u1 install ok installed ncurses-base ncurses-base 6.4-4 install ok installed ncurses-bin ncurses-bin 6.4-4 install ok installed passwd passwd 1:4.13+dfsg1-1+b1 install ok installed perl-base perl-base 5.36.0-7+deb12u1 install ok installed sed sed 4.9-1 install ok installed sysvinit-utils sysvinit-utils 3.06-4 install ok installed tar tar 1.34+dfsg-1.2+deb12u1 install ok installed tzdata tzdata 2024a-0+deb12u1 install ok installed usr-is-merged usr-is-merged 37~deb12u1 install ok installed util-linux util-linux 2.38.1-5+deb12u1 install ok installed util-linux-extra util-linux-extra 2.38.1-5+deb12u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.13.dfsg-1 0m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.0s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stable22sid/reference-chroot-metadata.dat 0m5.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb04q5riy'] 0m5.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb04q5riy'] 0m5.4s INFO: Running scripts is_testable 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/is_testable_uninstallable'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/is_testable_uninstallable'] 0m5.4s INFO: Running scripts pre_test 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_test_exceptions'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_test_exceptions'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_test_root_password'] 0m5.4s DUMP: New password: Retype new password: passwd: password updated successfully 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_test_root_password'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-cache', 'show', '--no-all-versions', 'xpore'] 0m5.7s DUMP: Package: xpore Version: 2.1-1 Installed-Size: 146 Maintainer: Debian Med Packaging Team Architecture: all Depends: pyensembl, python3-h5py-serial, python3-numpy, python3-pandas, python3-scipy, python3-ujson, python3-yaml, python3:any Suggests: xpore-doc Description-en: Nanopore analysis of differential RNA modifications RNA is transcribed from DNA, possibly spliced and exported to the cytoplasm - fine - but its bases can also be modified, edited, and not all such modifications are visible by Sanger sequencing methods and its derivatives. . The Nanopore measures potentials, and if the bases have a different shape then this is measured - not necessarily in an interpretable manner, something must be left for mass spectrometry, but one may be pointed to a difference. And maybe one can even statistically associate such differences with a molecular or clinical phenotype. Description-md5: 0493c5291452f14d39a3ce9aeea20ba2 Homepage: https://github.com/GoekeLab/xpore/ Section: science Priority: optional Filename: pool/main/x/xpore/xpore_2.1-1_all.deb Size: 30508 MD5sum: f5d86939b2152015c9690599fd5436af SHA256: 5af28afa9e5d8321b17a7a425a28f58bf29e618743d6a696a0a93cf70cde3322 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-cache', 'show', '--no-all-versions', 'xpore'] 0m5.7s INFO: apt-cache knows about the following packages: xpore 0m5.7s INFO: Running scripts pre_install 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_database-server'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_database-server'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_exceptions'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_exceptions'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_extras'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_extras'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-cache', 'policy'] 0m5.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bookworm/main amd64 Packages release v=12.6,o=Debian,a=stable,n=bookworm,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-cache', 'policy'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-cache', 'policy', 'xpore'] 0m5.8s DUMP: xpore: Installed: (none) Candidate: 2.1-1 Version table: 2.1-1 500 500 http://deb.debian.org/debian bookworm/main amd64 Packages 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-cache', 'policy', 'xpore'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-get', '-y', 'install', 'xpore'] 1m0.7s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu ca-certificates cpp cpp-12 g++ g++-12 gcc gcc-12 libaec0 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl4 libdouble-conversion3 libexpat1 libexpat1-dev libgcc-12-dev libgfortran5 libgomp1 libgprofng0 libgssapi-krb5-2 libhdf5-103-1 libhdf5-hl-100 libisl23 libitm1 libjansson4 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblsan0 liblzf1 libmpc3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libsz2 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libxsimd-dev libyaml-0-2 linux-libc-dev media-types openssl pyensembl pylint python3 python3-all python3-all-dev python3-appdirs python3-astroid python3-beniget python3-certifi python3-chardet python3-charset-normalizer python3-datacache python3-dateutil python3-decorator python3-dev python3-dill python3-distutils python3-gast python3-gtfparse python3-h5py-serial python3-idna python3-importlib-metadata python3-isort python3-lazy-object-proxy python3-lib2to3 python3-logilab-common python3-mccabe python3-memoized-property python3-minimal python3-mock python3-more-itertools python3-mypy-extensions python3-nose python3-numpy python3-pandas python3-pandas-lib python3-pbr python3-pkg-resources python3-platformdirs python3-ply python3-pythran python3-requests python3-scipy python3-serializable python3-setuptools python3-simplejson python3-six python3-toml python3-tomlkit python3-typechecks python3-typing-extensions python3-tz python3-ujson python3-urllib3 python3-wrapt python3-yaml python3-zipp python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto zlib1g-dev Suggested packages: binutils-doc cpp-doc gcc-12-locales cpp-12-doc g++-multilib g++-12-multilib gcc-12-doc gcc-multilib make manpages-dev autoconf automake libtool flex bison gdb gcc-doc gcc-12-multilib libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev glibc-doc krb5-doc krb5-user libstdc++-12-doc libxsimd-doc pylint-doc python3-doc python3-tk python3-venv python3-objgraph python3-h5py python-h5py-doc python-mock-doc python-nose-doc gfortran python3-pytest python-pandas-doc python3-statsmodels python-ply-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-setuptools-doc python3-brotli python3.11-venv python3.11-doc binfmt-support readline-doc xpore-doc Recommended packages: manpages manpages-dev libc-devtools javascript-common krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules python3-tk python3-matplotlib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables python3-jinja2 python3-numba python3-pil The following NEW packages will be installed: binutils binutils-common binutils-x86-64-linux-gnu ca-certificates cpp cpp-12 g++ g++-12 gcc gcc-12 libaec0 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.74-dev libbrotli1 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl4 libdouble-conversion3 libexpat1 libexpat1-dev libgcc-12-dev libgfortran5 libgomp1 libgprofng0 libgssapi-krb5-2 libhdf5-103-1 libhdf5-hl-100 libisl23 libitm1 libjansson4 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblsan0 liblzf1 libmpc3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssl3 libstdc++-12-dev libsz2 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libxsimd-dev libyaml-0-2 linux-libc-dev media-types openssl pyensembl pylint python3 python3-all python3-all-dev python3-appdirs python3-astroid python3-beniget python3-certifi python3-chardet python3-charset-normalizer python3-datacache python3-dateutil python3-decorator python3-dev python3-dill python3-distutils python3-gast python3-gtfparse python3-h5py-serial python3-idna python3-importlib-metadata python3-isort python3-lazy-object-proxy python3-lib2to3 python3-logilab-common python3-mccabe python3-memoized-property python3-minimal python3-mock python3-more-itertools python3-mypy-extensions python3-nose python3-numpy python3-pandas python3-pandas-lib python3-pbr python3-pkg-resources python3-platformdirs python3-ply python3-pythran python3-requests python3-scipy python3-serializable python3-setuptools python3-simplejson python3-six python3-toml python3-tomlkit python3-typechecks python3-typing-extensions python3-tz python3-ujson python3-urllib3 python3-wrapt python3-yaml python3-zipp python3.11 python3.11-dev python3.11-minimal readline-common rpcsvc-proto xpore zlib1g-dev 0 upgraded, 152 newly installed, 0 to remove and 0 not upgraded. Need to get 142 MB of archives. After this operation, 757 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bookworm/main amd64 libssl3 amd64 3.0.13-1~deb12u1 [2022 kB] Get:2 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6+deb12u2 [814 kB] Get:3 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:4 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6+deb12u2 [2067 kB] Get:5 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get:6 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get:7 http://deb.debian.org/debian bookworm/main amd64 libncursesw6 amd64 6.4-4 [134 kB] Get:8 http://deb.debian.org/debian bookworm/main amd64 libkrb5support0 amd64 1.20.1-2+deb12u1 [32.4 kB] Get:9 http://deb.debian.org/debian bookworm/main amd64 libk5crypto3 amd64 1.20.1-2+deb12u1 [78.9 kB] Get:10 http://deb.debian.org/debian bookworm/main amd64 libkeyutils1 amd64 1.6.3-2 [8808 B] Get:11 http://deb.debian.org/debian bookworm/main amd64 libkrb5-3 amd64 1.20.1-2+deb12u1 [332 kB] Get:12 http://deb.debian.org/debian bookworm/main amd64 libgssapi-krb5-2 amd64 1.20.1-2+deb12u1 [134 kB] Get:13 http://deb.debian.org/debian bookworm/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:14 http://deb.debian.org/debian bookworm/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] Get:15 http://deb.debian.org/debian bookworm/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:16 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:17 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:18 http://deb.debian.org/debian bookworm/main amd64 libsqlite3-0 amd64 3.40.1-2 [837 kB] Get:19 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6+deb12u2 [1799 kB] Get:20 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6+deb12u2 [573 kB] Get:21 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get:22 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get:23 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.13-1~deb12u1 [1418 kB] Get:24 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get:25 http://deb.debian.org/debian bookworm/main amd64 binutils-common amd64 2.40-2 [2487 kB] Get:26 http://deb.debian.org/debian bookworm/main amd64 libbinutils amd64 2.40-2 [572 kB] Get:27 http://deb.debian.org/debian bookworm/main amd64 libctf-nobfd0 amd64 2.40-2 [153 kB] Get:28 http://deb.debian.org/debian bookworm/main amd64 libctf0 amd64 2.40-2 [89.8 kB] Get:29 http://deb.debian.org/debian bookworm/main amd64 libgprofng0 amd64 2.40-2 [812 kB] Get:30 http://deb.debian.org/debian bookworm/main amd64 libjansson4 amd64 2.14-2 [40.8 kB] Get:31 http://deb.debian.org/debian bookworm/main amd64 binutils-x86-64-linux-gnu amd64 2.40-2 [2246 kB] Get:32 http://deb.debian.org/debian bookworm/main amd64 binutils amd64 2.40-2 [65.0 kB] Get:33 http://deb.debian.org/debian bookworm/main amd64 libisl23 amd64 0.25-1.1 [683 kB] Get:34 http://deb.debian.org/debian bookworm/main amd64 libmpfr6 amd64 4.2.0-1 [701 kB] Get:35 http://deb.debian.org/debian bookworm/main amd64 libmpc3 amd64 1.3.1-1 [51.5 kB] Get:36 http://deb.debian.org/debian bookworm/main amd64 cpp-12 amd64 12.2.0-14 [9764 kB] Get:37 http://deb.debian.org/debian bookworm/main amd64 cpp amd64 4:12.2.0-3 [6836 B] Get:38 http://deb.debian.org/debian bookworm/main amd64 libcc1-0 amd64 12.2.0-14 [41.7 kB] Get:39 http://deb.debian.org/debian bookworm/main amd64 libgomp1 amd64 12.2.0-14 [116 kB] Get:40 http://deb.debian.org/debian bookworm/main amd64 libitm1 amd64 12.2.0-14 [26.1 kB] Get:41 http://deb.debian.org/debian bookworm/main amd64 libatomic1 amd64 12.2.0-14 [9328 B] Get:42 http://deb.debian.org/debian bookworm/main amd64 libasan8 amd64 12.2.0-14 [2195 kB] Get:43 http://deb.debian.org/debian bookworm/main amd64 liblsan0 amd64 12.2.0-14 [969 kB] Get:44 http://deb.debian.org/debian bookworm/main amd64 libtsan2 amd64 12.2.0-14 [2196 kB] Get:45 http://deb.debian.org/debian bookworm/main amd64 libubsan1 amd64 12.2.0-14 [883 kB] Get:46 http://deb.debian.org/debian bookworm/main amd64 libquadmath0 amd64 12.2.0-14 [144 kB] Get:47 http://deb.debian.org/debian bookworm/main amd64 libgcc-12-dev amd64 12.2.0-14 [2437 kB] Get:48 http://deb.debian.org/debian bookworm/main amd64 gcc-12 amd64 12.2.0-14 [19.3 MB] Get:49 http://deb.debian.org/debian bookworm/main amd64 gcc amd64 4:12.2.0-3 [5216 B] Get:50 http://deb.debian.org/debian bookworm/main amd64 libc-dev-bin amd64 2.36-9+deb12u7 [45.8 kB] Get:51 http://deb.debian.org/debian bookworm/main amd64 linux-libc-dev amd64 6.1.94-1 [1994 kB] Get:52 http://deb.debian.org/debian bookworm/main amd64 libcrypt-dev amd64 1:4.4.33-2 [118 kB] Get:53 http://deb.debian.org/debian bookworm/main amd64 libtirpc-dev amd64 1.3.3+ds-1 [191 kB] Get:54 http://deb.debian.org/debian bookworm/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:55 http://deb.debian.org/debian bookworm/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:56 http://deb.debian.org/debian bookworm/main amd64 libc6-dev amd64 2.36-9+deb12u7 [1899 kB] Get:57 http://deb.debian.org/debian bookworm/main amd64 libstdc++-12-dev amd64 12.2.0-14 [2046 kB] Get:58 http://deb.debian.org/debian bookworm/main amd64 g++-12 amd64 12.2.0-14 [10.7 MB] Get:59 http://deb.debian.org/debian bookworm/main amd64 g++ amd64 4:12.2.0-3 [1356 B] Get:60 http://deb.debian.org/debian bookworm/main amd64 libaec0 amd64 1.0.6-1+b1 [21.1 kB] Get:61 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get:62 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-21 [9508 kB] Get:63 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get:64 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get:65 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get:66 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get:67 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get:68 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1+deb12u1 [72.4 kB] Get:69 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get:70 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:71 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:72 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-10+deb12u6 [390 kB] Get:73 http://deb.debian.org/debian bookworm/main amd64 libdouble-conversion3 amd64 3.2.1-1 [41.5 kB] Get:74 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get:75 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get:76 http://deb.debian.org/debian bookworm/main amd64 libsz2 amd64 1.0.6-1+b1 [7804 B] Get:77 http://deb.debian.org/debian bookworm/main amd64 libhdf5-103-1 amd64 1.10.8+repack1-1 [1237 kB] Get:78 http://deb.debian.org/debian bookworm/main amd64 libhdf5-hl-100 amd64 1.10.8+repack1-1 [67.8 kB] Get:79 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:80 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:81 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get:82 http://deb.debian.org/debian bookworm/main amd64 libopenblas0-pthread amd64 0.3.21+ds-4 [6709 kB] Get:83 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get:84 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [28.9 kB] Get:85 http://deb.debian.org/debian bookworm/main amd64 liblzf1 amd64 3.6-3 [10.2 kB] Get:86 http://deb.debian.org/debian bookworm/main amd64 libopenblas0 amd64 0.3.21+ds-4 [32.6 kB] Get:87 http://deb.debian.org/debian bookworm/main amd64 libopenblas-pthread-dev amd64 0.3.21+ds-4 [4971 kB] Get:88 http://deb.debian.org/debian bookworm/main amd64 libopenblas-dev amd64 0.3.21+ds-4 [44.9 kB] Get:89 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6+deb12u2 [1987 kB] Get:90 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get:91 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6+deb12u2 [4742 kB] Get:92 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get:93 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get:94 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get:95 http://deb.debian.org/debian bookworm/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:96 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get:97 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get:98 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get:99 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Get:100 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:101 http://deb.debian.org/debian bookworm/main amd64 python3-typing-extensions all 4.4.0-1 [45.2 kB] Get:102 http://deb.debian.org/debian bookworm/main amd64 python3-lazy-object-proxy amd64 1.9.0-1+b1 [21.5 kB] Get:103 http://deb.debian.org/debian bookworm/main amd64 python3-wrapt amd64 1.14.1-2+b2 [42.1 kB] Get:104 http://deb.debian.org/debian bookworm/main amd64 python3-astroid all 2.14.2-1 [209 kB] Get:105 http://deb.debian.org/debian bookworm/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get:106 http://deb.debian.org/debian bookworm/main amd64 python3-isort all 5.6.4-1 [63.2 kB] Get:107 http://deb.debian.org/debian bookworm/main amd64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get:108 http://deb.debian.org/debian bookworm/main amd64 python3-zipp all 1.0.0-6 [6696 B] Get:109 http://deb.debian.org/debian bookworm/main amd64 python3-importlib-metadata all 4.12.0-1 [24.9 kB] Get:110 http://deb.debian.org/debian bookworm/main amd64 python3-mypy-extensions all 0.4.3-4 [5788 B] Get:111 http://deb.debian.org/debian bookworm/main amd64 python3-logilab-common all 1.9.8-1 [380 kB] Get:112 http://deb.debian.org/debian bookworm/main amd64 python3-dill all 0.3.6-1 [79.5 kB] Get:113 http://deb.debian.org/debian bookworm/main amd64 python3-mccabe all 0.7.0-1 [10.5 kB] Get:114 http://deb.debian.org/debian bookworm/main amd64 python3-platformdirs all 2.6.0-1 [16.3 kB] Get:115 http://deb.debian.org/debian bookworm/main amd64 python3-tomlkit all 0.11.7-1 [40.5 kB] Get:116 http://deb.debian.org/debian bookworm/main amd64 pylint all 2.16.2-2 [339 kB] Get:117 http://deb.debian.org/debian bookworm/main amd64 python3-appdirs all 1.4.4-3 [13.0 kB] Get:118 http://deb.debian.org/debian bookworm/main amd64 python3-pbr all 5.10.0-2 [61.4 kB] Get:119 http://deb.debian.org/debian bookworm/main amd64 python3-mock all 4.0.3-4 [64.0 kB] Get:120 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-2 [78.3 kB] Get:121 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get:122 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.7.1-4 [30.1 kB] Get:123 http://deb.debian.org/debian bookworm/main amd64 python3-pandas-lib amd64 1.5.3+dfsg-2 [3499 kB] Get:124 http://deb.debian.org/debian bookworm/main amd64 python3-pandas all 1.5.3+dfsg-2 [2885 kB] Get:125 http://deb.debian.org/debian bookworm/main amd64 python3-certifi all 2022.9.24-1 [153 kB] Get:126 http://deb.debian.org/debian bookworm/main amd64 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get:127 http://deb.debian.org/debian bookworm/main amd64 python3-idna all 3.3-1+deb12u1 [41.0 kB] Get:128 http://deb.debian.org/debian bookworm/main amd64 python3-urllib3 all 1.26.12-1 [117 kB] Get:129 http://deb.debian.org/debian bookworm/main amd64 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get:130 http://deb.debian.org/debian bookworm/main amd64 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get:131 http://deb.debian.org/debian bookworm/main amd64 python3-typechecks all 0.1.0+ds-3 [4484 B] Get:132 http://deb.debian.org/debian bookworm/main amd64 python3-datacache all 1.2.1-1 [12.6 kB] Get:133 http://deb.debian.org/debian bookworm/main amd64 python3-gtfparse all 1.3.0+ds-1 [10.1 kB] Get:134 http://deb.debian.org/debian bookworm/main amd64 python3-memoized-property all 1.0.3-2 [5552 B] Get:135 http://deb.debian.org/debian bookworm/main amd64 python3-nose all 1.3.7-9 [130 kB] Get:136 http://deb.debian.org/debian bookworm/main amd64 python3-simplejson amd64 3.18.3-1 [59.8 kB] Get:137 http://deb.debian.org/debian bookworm/main amd64 python3-serializable all 0.2.1+ds-2 [8176 B] Get:138 http://deb.debian.org/debian bookworm/main amd64 pyensembl all 2.2.4+ds-1 [35.0 kB] Get:139 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get:140 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6+deb12u2 [615 kB] Get:141 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get:142 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Get:143 http://deb.debian.org/debian bookworm/main amd64 python3-gast all 0.5.2-2 [9364 B] Get:144 http://deb.debian.org/debian bookworm/main amd64 python3-beniget all 0.4.1-3 [9920 B] Get:145 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get:146 http://deb.debian.org/debian bookworm/main amd64 python3-h5py-serial amd64 3.7.0-8 [804 kB] Get:147 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get:148 http://deb.debian.org/debian bookworm/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get:149 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.10.1-2 [15.2 MB] Get:150 http://deb.debian.org/debian bookworm/main amd64 python3-ujson amd64 5.7.0-1 [24.2 kB] Get:151 http://deb.debian.org/debian bookworm/main amd64 python3-yaml amd64 6.0-3+b2 [119 kB] Get:152 http://deb.debian.org/debian bookworm/main amd64 xpore all 2.1-1 [30.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 142 MB in 4s (39.9 MB/s) Selecting previously unselected package libssl3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6093 files and directories currently installed.) Preparing to unpack .../libssl3_3.0.13-1~deb12u1_amd64.deb ... Unpacking libssl3:amd64 (3.0.13-1~deb12u1) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.2-6+deb12u2_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6+deb12u2) ... Selecting previously unselected package libexpat1:amd64. 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Preparing to unpack .../061-liblapack3_3.11.0-2_amd64.deb ... Unpacking liblapack3:amd64 (3.11.0-2) ... Selecting previously unselected package liblbfgsb0:amd64. Preparing to unpack .../062-liblbfgsb0_3.0+dfsg.4-1_amd64.deb ... Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Selecting previously unselected package liblzf1:amd64. Preparing to unpack .../063-liblzf1_3.6-3_amd64.deb ... Unpacking liblzf1:amd64 (3.6-3) ... Selecting previously unselected package libopenblas0:amd64. Preparing to unpack .../064-libopenblas0_0.3.21+ds-4_amd64.deb ... Unpacking libopenblas0:amd64 (0.3.21+ds-4) ... Selecting previously unselected package libopenblas-pthread-dev:amd64. Preparing to unpack .../065-libopenblas-pthread-dev_0.3.21+ds-4_amd64.deb ... Unpacking libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... Selecting previously unselected package libopenblas-dev:amd64. Preparing to unpack .../066-libopenblas-dev_0.3.21+ds-4_amd64.deb ... Unpacking libopenblas-dev:amd64 (0.3.21+ds-4) ... Selecting previously unselected package libpython3.11:amd64. Preparing to unpack .../067-libpython3.11_3.11.2-6+deb12u2_amd64.deb ... Unpacking libpython3.11:amd64 (3.11.2-6+deb12u2) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../068-zlib1g-dev_1%3a1.2.13.dfsg-1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Selecting previously unselected package libpython3.11-dev:amd64. Preparing to unpack .../069-libpython3.11-dev_3.11.2-6+deb12u2_amd64.deb ... Unpacking libpython3.11-dev:amd64 (3.11.2-6+deb12u2) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../070-libpython3-dev_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-dev:amd64 (3.11.2-1+b1) ... Selecting previously unselected package libpython3-all-dev:amd64. Preparing to unpack .../071-libpython3-all-dev_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-all-dev:amd64 (3.11.2-1+b1) ... Selecting previously unselected package libxsimd-dev:amd64. Preparing to unpack .../072-libxsimd-dev_8.1.0-7_amd64.deb ... Unpacking libxsimd-dev:amd64 (8.1.0-7) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../073-libyaml-0-2_0.2.5-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.5-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../074-python3-pkg-resources_66.1.1-1_all.deb ... Unpacking python3-pkg-resources (66.1.1-1) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../075-python3-lib2to3_3.11.2-3_all.deb ... Unpacking python3-lib2to3 (3.11.2-3) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../076-python3-distutils_3.11.2-3_all.deb ... Unpacking python3-distutils (3.11.2-3) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../077-python3-setuptools_66.1.1-1_all.deb ... Unpacking python3-setuptools (66.1.1-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../078-python3-six_1.16.0-4_all.deb ... Unpacking python3-six (1.16.0-4) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../079-python3-typing-extensions_4.4.0-1_all.deb ... Unpacking python3-typing-extensions (4.4.0-1) ... Selecting previously unselected package python3-lazy-object-proxy. Preparing to unpack .../080-python3-lazy-object-proxy_1.9.0-1+b1_amd64.deb ... Unpacking python3-lazy-object-proxy (1.9.0-1+b1) ... Selecting previously unselected package python3-wrapt. Preparing to unpack .../081-python3-wrapt_1.14.1-2+b2_amd64.deb ... Unpacking python3-wrapt (1.14.1-2+b2) ... Selecting previously unselected package python3-astroid. Preparing to unpack .../082-python3-astroid_2.14.2-1_all.deb ... Unpacking python3-astroid (2.14.2-1) ... Selecting previously unselected package python3-toml. Preparing to unpack .../083-python3-toml_0.10.2-1_all.deb ... Unpacking python3-toml (0.10.2-1) ... Selecting previously unselected package python3-isort. Preparing to unpack .../084-python3-isort_5.6.4-1_all.deb ... Unpacking python3-isort (5.6.4-1) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../085-python3-more-itertools_8.10.0-2_all.deb ... Unpacking python3-more-itertools (8.10.0-2) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../086-python3-zipp_1.0.0-6_all.deb ... Unpacking python3-zipp (1.0.0-6) ... Selecting previously unselected package python3-importlib-metadata. Preparing to unpack .../087-python3-importlib-metadata_4.12.0-1_all.deb ... Unpacking python3-importlib-metadata (4.12.0-1) ... Selecting previously unselected package python3-mypy-extensions. Preparing to unpack .../088-python3-mypy-extensions_0.4.3-4_all.deb ... Unpacking python3-mypy-extensions (0.4.3-4) ... Selecting previously unselected package python3-logilab-common. Preparing to unpack .../089-python3-logilab-common_1.9.8-1_all.deb ... Unpacking python3-logilab-common (1.9.8-1) ... Selecting previously unselected package python3-dill. Preparing to unpack .../090-python3-dill_0.3.6-1_all.deb ... Unpacking python3-dill (0.3.6-1) ... Selecting previously unselected package python3-mccabe. Preparing to unpack .../091-python3-mccabe_0.7.0-1_all.deb ... Unpacking python3-mccabe (0.7.0-1) ... Selecting previously unselected package python3-platformdirs. Preparing to unpack .../092-python3-platformdirs_2.6.0-1_all.deb ... Unpacking python3-platformdirs (2.6.0-1) ... Selecting previously unselected package python3-tomlkit. Preparing to unpack .../093-python3-tomlkit_0.11.7-1_all.deb ... Unpacking python3-tomlkit (0.11.7-1) ... Selecting previously unselected package pylint. Preparing to unpack .../094-pylint_2.16.2-2_all.deb ... Unpacking pylint (2.16.2-2) ... Selecting previously unselected package python3-appdirs. Preparing to unpack .../095-python3-appdirs_1.4.4-3_all.deb ... Unpacking python3-appdirs (1.4.4-3) ... Selecting previously unselected package python3-pbr. Preparing to unpack .../096-python3-pbr_5.10.0-2_all.deb ... Unpacking python3-pbr (5.10.0-2) ... Selecting previously unselected package python3-mock. Preparing to unpack .../097-python3-mock_4.0.3-4_all.deb ... Unpacking python3-mock (4.0.3-4) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../098-python3-dateutil_2.8.2-2_all.deb ... Unpacking python3-dateutil (2.8.2-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../099-python3-numpy_1%3a1.24.2-1_amd64.deb ... Unpacking python3-numpy (1:1.24.2-1) ... Selecting previously unselected package python3-tz. Preparing to unpack .../100-python3-tz_2022.7.1-4_all.deb ... Unpacking python3-tz (2022.7.1-4) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../101-python3-pandas-lib_1.5.3+dfsg-2_amd64.deb ... Unpacking python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../102-python3-pandas_1.5.3+dfsg-2_all.deb ... Unpacking python3-pandas (1.5.3+dfsg-2) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../103-python3-certifi_2022.9.24-1_all.deb ... Unpacking python3-certifi (2022.9.24-1) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../104-python3-charset-normalizer_3.0.1-2_all.deb ... Unpacking python3-charset-normalizer (3.0.1-2) ... Selecting previously unselected package python3-idna. Preparing to unpack .../105-python3-idna_3.3-1+deb12u1_all.deb ... Unpacking python3-idna (3.3-1+deb12u1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../106-python3-urllib3_1.26.12-1_all.deb ... Unpacking python3-urllib3 (1.26.12-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../107-python3-chardet_5.1.0+dfsg-2_all.deb ... Unpacking python3-chardet (5.1.0+dfsg-2) ... Selecting previously unselected package python3-requests. Preparing to unpack .../108-python3-requests_2.28.1+dfsg-1_all.deb ... Unpacking python3-requests (2.28.1+dfsg-1) ... Selecting previously unselected package python3-typechecks. Preparing to unpack .../109-python3-typechecks_0.1.0+ds-3_all.deb ... Unpacking python3-typechecks (0.1.0+ds-3) ... Selecting previously unselected package python3-datacache. Preparing to unpack .../110-python3-datacache_1.2.1-1_all.deb ... Unpacking python3-datacache (1.2.1-1) ... Selecting previously unselected package python3-gtfparse. Preparing to unpack .../111-python3-gtfparse_1.3.0+ds-1_all.deb ... Unpacking python3-gtfparse (1.3.0+ds-1) ... Selecting previously unselected package python3-memoized-property. Preparing to unpack .../112-python3-memoized-property_1.0.3-2_all.deb ... Unpacking python3-memoized-property (1.0.3-2) ... Selecting previously unselected package python3-nose. Preparing to unpack .../113-python3-nose_1.3.7-9_all.deb ... Unpacking python3-nose (1.3.7-9) ... Selecting previously unselected package python3-simplejson. Preparing to unpack .../114-python3-simplejson_3.18.3-1_amd64.deb ... Unpacking python3-simplejson (3.18.3-1) ... Selecting previously unselected package python3-serializable. Preparing to unpack .../115-python3-serializable_0.2.1+ds-2_all.deb ... Unpacking python3-serializable (0.2.1+ds-2) ... Selecting previously unselected package pyensembl. Preparing to unpack .../116-pyensembl_2.2.4+ds-1_all.deb ... Unpacking pyensembl (2.2.4+ds-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../117-python3-all_3.11.2-1+b1_amd64.deb ... Unpacking python3-all (3.11.2-1+b1) ... Selecting previously unselected package python3.11-dev. Preparing to unpack .../118-python3.11-dev_3.11.2-6+deb12u2_amd64.deb ... Unpacking python3.11-dev (3.11.2-6+deb12u2) ... Selecting previously unselected package python3-dev. Preparing to unpack .../119-python3-dev_3.11.2-1+b1_amd64.deb ... Unpacking python3-dev (3.11.2-1+b1) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../120-python3-all-dev_3.11.2-1+b1_amd64.deb ... Unpacking python3-all-dev (3.11.2-1+b1) ... Selecting previously unselected package python3-gast. Preparing to unpack .../121-python3-gast_0.5.2-2_all.deb ... Unpacking python3-gast (0.5.2-2) ... Selecting previously unselected package python3-beniget. Preparing to unpack .../122-python3-beniget_0.4.1-3_all.deb ... Unpacking python3-beniget (0.4.1-3) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../123-python3-decorator_5.1.1-3_all.deb ... Unpacking python3-decorator (5.1.1-3) ... Selecting previously unselected package python3-h5py-serial. Preparing to unpack .../124-python3-h5py-serial_3.7.0-8_amd64.deb ... Unpacking python3-h5py-serial (3.7.0-8) ... Selecting previously unselected package python3-ply. Preparing to unpack .../125-python3-ply_3.11-5_all.deb ... Unpacking python3-ply (3.11-5) ... Selecting previously unselected package python3-pythran. Preparing to unpack .../126-python3-pythran_0.11.0+ds-7_amd64.deb ... Unpacking python3-pythran (0.11.0+ds-7) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../127-python3-scipy_1.10.1-2_amd64.deb ... Unpacking python3-scipy (1.10.1-2) ... Selecting previously unselected package python3-ujson:amd64. Preparing to unpack .../128-python3-ujson_5.7.0-1_amd64.deb ... Unpacking python3-ujson:amd64 (5.7.0-1) ... Selecting previously unselected package python3-yaml. Preparing to unpack .../129-python3-yaml_6.0-3+b2_amd64.deb ... Unpacking python3-yaml (6.0-3+b2) ... Selecting previously unselected package xpore. Preparing to unpack .../130-xpore_2.1-1_all.deb ... Unpacking xpore (2.1-1) ... Setting up media-types (10.0.0) ... Setting up libdouble-conversion3:amd64 (3.2.1-1) ... Setting up libkeyutils1:amd64 (1.6.3-2) ... Setting up libpsl5:amd64 (0.21.2-1) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libtirpc-common (1.3.3+ds-1) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libsqlite3-0:amd64 (3.40.1-2) ... Setting up binutils-common:amd64 (2.40-2) ... Setting up libnghttp2-14:amd64 (1.52.0-1+deb12u1) ... Setting up linux-libc-dev:amd64 (6.1.94-1) ... Setting up libctf-nobfd0:amd64 (2.40-2) ... Setting up libgomp1:amd64 (12.2.0-14) ... Setting up libaec0:amd64 (1.0.6-1+b1) ... Setting up libjansson4:amd64 (2.14-2) ... Setting up libkrb5support0:amd64 (1.20.1-2+deb12u1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Setting up libxsimd-dev:amd64 (8.1.0-7) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up rpcsvc-proto (1.4.3-1) ... Setting up libmpfr6:amd64 (4.2.0-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up liblzf1:amd64 (3.6-3) ... Setting up libquadmath0:amd64 (12.2.0-14) ... Setting up libmpc3:amd64 (1.3.1-1) ... Setting up libatomic1:amd64 (12.2.0-14) ... Setting up libncursesw6:amd64 (6.4-4) ... Setting up libk5crypto3:amd64 (1.20.1-2+deb12u1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up libubsan1:amd64 (12.2.0-14) ... Setting up libcrypt-dev:amd64 (1:4.4.33-2) ... Setting up libasan8:amd64 (12.2.0-14) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up libkrb5-3:amd64 (1.20.1-2+deb12u1) ... Setting up libtsan2:amd64 (12.2.0-14) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libbinutils:amd64 (2.40-2) ... Setting up libisl23:amd64 (0.25-1.1) ... Setting up libc-dev-bin (2.36-9+deb12u7) ... Setting up openssl (3.0.13-1~deb12u1) ... Setting up readline-common (8.2-1.3) ... Setting up libcc1-0:amd64 (12.2.0-14) ... Setting up liblsan0:amd64 (12.2.0-14) ... Setting up libsz2:amd64 (1.0.6-1+b1) ... Setting up libitm1:amd64 (12.2.0-14) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libctf0:amd64 (2.40-2) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up cpp-12 (12.2.0-14) ... Setting up libopenblas0-pthread:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libgprofng0:amd64 (2.40-2) ... Setting up libgcc-12-dev:amd64 (12.2.0-14) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2+deb12u1) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up libopenblas0:amd64 (0.3.21+ds-4) ... Setting up cpp (4:12.2.0-3) ... Setting up libcurl4:amd64 (7.88.1-10+deb12u6) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Setting up binutils-x86-64-linux-gnu (2.40-2) ... Setting up libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up binutils (2.40-2) ... Setting up libopenblas-dev:amd64 (0.3.21+ds-4) ... Setting up libtirpc-dev:amd64 (1.3.3+ds-1) ... Setting up gcc-12 (12.2.0-14) ... Setting up libhdf5-103-1:amd64 (1.10.8+repack1-1) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libhdf5-hl-100:amd64 (1.10.8+repack1-1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6+deb12u2) ... Setting up gcc (4:12.2.0-3) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.36-9+deb12u7) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6+deb12u2) ... Setting up libpython3.11:amd64 (3.11.2-6+deb12u2) ... Setting up libstdc++-12-dev:amd64 (12.2.0-14) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-ujson:amd64 (5.7.0-1) ... Setting up python3-platformdirs (2.6.0-1) ... Setting up python3-tz (2022.7.1-4) ... Setting up python3-six (1.16.0-4) ... Setting up python3-simplejson (3.18.3-1) ... Setting up python3-decorator (5.1.1-3) ... Setting up libexpat1-dev:amd64 (2.5.0-1) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-dill (0.3.6-1) ... Setting up python3-idna (3.3-1+deb12u1) ... Setting up python3-wrapt (1.14.1-2+b2) ... Setting up python3-typing-extensions (4.4.0-1) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-isort (5.6.4-1) ... Setting up python3-urllib3 (1.26.12-1) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-mccabe (0.7.0-1) ... Setting up python3-lazy-object-proxy (1.9.0-1+b1) ... Setting up python3-tomlkit (0.11.7-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-appdirs (1.4.4-3) ... Setting up g++-12 (12.2.0-14) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up libboost1.74-dev:amd64 (1.74.0+ds1-21) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-typechecks (0.1.0+ds-3) ... Setting up python3-memoized-property (1.0.3-2) ... Setting up python3-pbr (5.10.0-2) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-mypy-extensions (0.4.3-4) ... Setting up python3-ply (3.11-5) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-yaml (6.0-3+b2) ... Setting up python3-serializable (0.2.1+ds-2) ... Setting up python3-zipp (1.0.0-6) ... Setting up python3-nose (1.3.7-9) ... Setting up python3-mock (4.0.3-4) ... Setting up python3-beniget (0.4.1-3) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up libpython3.11-dev:amd64 (3.11.2-6+deb12u2) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up g++ (4:12.2.0-3) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up python3-astroid (2.14.2-1) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up python3-importlib-metadata (4.12.0-1) ... Setting up python3-logilab-common (1.9.8-1) ... Setting up python3.11-dev (3.11.2-6+deb12u2) ... Setting up python3-pandas-lib:amd64 (1.5.3+dfsg-2) ... Setting up python3-h5py-serial (3.7.0-8) ... Setting up python3-pandas (1.5.3+dfsg-2) ... Setting up libpython3-all-dev:amd64 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up pylint (2.16.2-2) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up python3-datacache (1.2.1-1) ... Setting up python3-gtfparse (1.3.0+ds-1) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up pyensembl (2.2.4+ds-1) ... Setting up python3-scipy (1.10.1-2) ... Setting up xpore (2.1-1) ... Processing triggers for libc-bin (2.36-9+deb12u7) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m0.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-get', '-y', 'install', 'xpore'] 1m0.7s INFO: Running scripts post_install 1m0.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_install_exceptions'] 1m0.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_install_exceptions'] 1m0.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb04q5riy'] 1m2.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb04q5riy'] 1m2.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpb04q5riy to testing 1m2.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 1m2.8s INFO: Running scripts pre_distupgrade 1m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_distupgrade_exceptions'] 1m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_distupgrade_exceptions'] 1m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m2.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m2.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-get', 'update'] 1m7.9s DUMP: Get:1 http://deb.debian.org/debian trixie InRelease [169 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 Packages [9251 kB] Get:3 http://deb.debian.org/debian trixie/main Translation-en [6163 kB] Fetched 15.6 MB in 4s (3889 kB/s) Reading package lists... 1m7.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-get', 'update'] 1m7.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-get', '-yf', 'dist-upgrade'] 2m32.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libboost-dev libboost1.83-dev libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libpython3-all-dev libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libtirpc-common libtirpc-dev libtirpc3t64 libxsimd-dev python3-all python3-all-dev python3-beniget python3-gast python3-lazy-object-proxy python3-lib2to3 python3-mock python3-more-itertools python3-nose python3-pbr python3-ply python3-pythran python3-toml python3-wrapt python3-zombie-imp python3.11 python3.11-dev python3.11-minimal xtl-dev Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0 libboost1.74-dev libcurl4 libdb5.3 libext2fs2 libgnutls30 libhdf5-103-1 libhdf5-hl-100 libhogweed6 libnettle8 libpsl5 libreadline8 libssh2-1 libssl3 libtirpc3 python3-distutils The following NEW packages will be installed: cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-14 gcc-14-base gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu libapt-pkg6.0t64 libboost1.83-dev libbsd0 libcurl4t64 libdb5.3t64 libext2fs2t64 libgcc-14-dev libgnutls30t64 libhdf5-103-1t64 libhdf5-hl-100t64 libhogweed6t64 libhwasan0 libnettle8t64 libpsl5t64 libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libreadline8t64 libsframe1 libssh2-1t64 libssl3t64 libstdc++-14-dev libtirpc3t64 libunistring5 netbase python3-h5py python3-zombie-imp python3.12 python3.12-dev python3.12-minimal xtl-dev The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils ca-certificates coreutils cpp cpp-12 dash debconf debian-archive-keyring debianutils diffutils dpkg e2fsprogs findutils g++ g++-12 gcc gcc-12 gcc-12-base gpgv grep gzip hostname init-system-helpers libacl1 libaec0 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblas3 libblkid1 libboost-dev libbrotli1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libdebconfclient0 libdouble-conversion3 libexpat1 libexpat1-dev libffi8 libgcc-12-dev libgcc-s1 libgcrypt20 libgfortran5 libgmp10 libgomp1 libgpg-error0 libgprofng0 libgssapi-krb5-2 libidn2-0 libisl23 libitm1 libjansson4 libjs-sphinxdoc libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblsan0 liblz4-1 liblzf1 liblzma5 libmd0 libmount1 libmpc3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpython3-all-dev libpython3-dev libpython3-stdlib libquadmath0 librtmp1 libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libstdc++-12-dev libstdc++6 libsystemd0 libsz2 libtasn1-6 libtinfo6 libtirpc-common libtirpc-dev libtsan2 libubsan1 libudev1 libuuid1 libxsimd-dev libxxhash0 libyaml-0-2 libzstd1 linux-libc-dev login logsave mawk media-types mount ncurses-base ncurses-bin openssl passwd perl-base pyensembl pylint python3 python3-all python3-all-dev python3-appdirs python3-astroid python3-certifi python3-chardet python3-charset-normalizer python3-datacache python3-dateutil python3-decorator python3-dev python3-dill python3-h5py-serial python3-idna python3-importlib-metadata python3-isort python3-lazy-object-proxy python3-lib2to3 python3-logilab-common python3-minimal python3-mock python3-more-itertools python3-mypy-extensions python3-nose python3-numpy python3-pandas python3-pandas-lib python3-pbr python3-pkg-resources python3-platformdirs python3-ply python3-pythran python3-requests python3-scipy python3-serializable python3-setuptools python3-simplejson python3-six python3-tomlkit python3-typechecks python3-typing-extensions python3-tz python3-ujson python3-urllib3 python3-wrapt python3-yaml python3-zipp readline-common sed sysvinit-utils tar tzdata usr-is-merged util-linux util-linux-extra xpore zlib1g zlib1g-dev 207 upgraded, 42 newly installed, 16 to remove and 0 not upgraded. Need to get 232 MB of archives. After this operation, 311 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 base-files amd64 13.5 [72.8 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libnsl-dev amd64 1.3.0-3+b2 [67.2 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libcrypt-dev amd64 1:4.4.36-5 [118 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libc6-dev amd64 2.39-7 [1925 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 libc-dev-bin amd64 2.39-7 [51.6 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [189 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 libzstd1 amd64 1.5.6+dfsg-1 [303 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.2.2-1 [1364 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.2-1 [425 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4 [1253 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4 [63.9 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2 [128 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] Get:21 http://deb.debian.org/debian trixie/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1 [87.9 kB] Get:22 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.0-7 [216 kB] Get:23 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b4 [300 kB] Get:24 http://deb.debian.org/debian trixie/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2+b1 [559 kB] Get:25 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get:26 http://deb.debian.org/debian trixie/main amd64 libc6 amd64 2.39-7 [2791 kB] Get:27 http://deb.debian.org/debian trixie/main amd64 libc-bin amd64 2.39-7 [610 kB] Get:28 http://deb.debian.org/debian trixie/main amd64 libgpg-error0 amd64 1.50-3 [81.5 kB] Get:29 http://deb.debian.org/debian trixie/main amd64 libgcrypt20 amd64 1.11.0-6 [843 kB] Get:30 http://deb.debian.org/debian trixie/main amd64 gcc-14-base amd64 14.2.0-1 [45.7 kB] Get:31 http://deb.debian.org/debian trixie/main amd64 libgcc-s1 amd64 14.2.0-1 [72.8 kB] Get:32 http://deb.debian.org/debian trixie/main amd64 libstdc++6 amd64 14.2.0-1 [713 kB] Get:33 http://deb.debian.org/debian trixie/main amd64 libnettle8t64 amd64 3.10-1 [303 kB] Get:34 http://deb.debian.org/debian trixie/main amd64 libhogweed6t64 amd64 3.10-1 [334 kB] Get:35 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-2 [424 kB] Get:36 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.6-2 [1444 kB] Get:37 http://deb.debian.org/debian trixie/main amd64 libapt-pkg6.0t64 amd64 2.9.8 [1045 kB] Get:38 http://deb.debian.org/debian trixie/main amd64 libbz2-1.0 amd64 1.0.8-6 [37.9 kB] Get:39 http://deb.debian.org/debian trixie/main amd64 libxxhash0 amd64 0.8.2-2+b1 [26.6 kB] Get:40 http://deb.debian.org/debian trixie/main amd64 liblz4-1 amd64 1.9.4-3 [59.4 kB] Get:41 http://deb.debian.org/debian trixie/main amd64 liblzma5 amd64 5.6.2-2 [254 kB] Get:42 http://deb.debian.org/debian trixie/main amd64 libcap2 amd64 1:2.66-5 [27.4 kB] Get:43 http://deb.debian.org/debian trixie/main amd64 libsystemd0 amd64 256.5-1 [381 kB] Get:44 http://deb.debian.org/debian trixie/main amd64 libudev1 amd64 256.5-1 [144 kB] Get:45 http://deb.debian.org/debian trixie/main amd64 libdebconfclient0 amd64 0.272 [10.0 kB] Get:46 http://deb.debian.org/debian trixie/main amd64 libpcre2-8-0 amd64 10.42-4+b1 [262 kB] Get:47 http://deb.debian.org/debian trixie/main amd64 libselinux1 amd64 3.5-2+b4 [75.1 kB] Get:48 http://deb.debian.org/debian trixie/main amd64 base-passwd amd64 3.6.4 [50.9 kB] Get:49 http://deb.debian.org/debian trixie/main amd64 libmd0 amd64 1.1.0-2 [35.8 kB] Get:50 http://deb.debian.org/debian trixie/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get:51 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-7 [19.6 kB] Get:52 http://deb.debian.org/debian trixie/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-7 [697 kB] Get:53 http://deb.debian.org/debian trixie/main amd64 libaudit-common all 1:3.1.2-4 [11.5 kB] Get:54 http://deb.debian.org/debian trixie/main amd64 libcap-ng0 amd64 0.8.5-2 [17.2 kB] Get:55 http://deb.debian.org/debian trixie/main amd64 libaudit1 amd64 1:3.1.2-4+b1 [49.0 kB] Get:56 http://deb.debian.org/debian trixie/main amd64 libcrypt1 amd64 1:4.4.36-5 [89.8 kB] Get:57 http://deb.debian.org/debian trixie/main amd64 perl-base amd64 5.38.2-5 [1643 kB] Get:58 http://deb.debian.org/debian trixie/main amd64 debconf all 1.5.87 [119 kB] Get:59 http://deb.debian.org/debian trixie/main amd64 libpam0g amd64 1.5.3-7 [67.7 kB] Get:60 http://deb.debian.org/debian trixie/main amd64 libpam-modules-bin amd64 1.5.3-7 [54.4 kB] Get:61 http://deb.debian.org/debian trixie/main amd64 libpam-modules amd64 1.5.3-7 [265 kB] Get:62 http://deb.debian.org/debian trixie/main amd64 libpam-runtime all 1.5.3-7 [140 kB] Get:63 http://deb.debian.org/debian trixie/main amd64 login amd64 1:4.15.3-2 [564 kB] Get:64 http://deb.debian.org/debian trixie/main amd64 libacl1 amd64 2.3.2-2 [32.4 kB] Get:65 http://deb.debian.org/debian trixie/main amd64 libattr1 amd64 1:2.5.2-1 [22.5 kB] Get:66 http://deb.debian.org/debian trixie/main amd64 libsemanage-common all 3.5-1 [9908 B] Get:67 http://deb.debian.org/debian trixie/main amd64 libsepol2 amd64 3.7-1 [293 kB] Get:68 http://deb.debian.org/debian trixie/main amd64 libsemanage2 amd64 3.5-1+b4 [90.1 kB] Get:69 http://deb.debian.org/debian trixie/main amd64 passwd amd64 1:4.15.3-2 [973 kB] Get:70 http://deb.debian.org/debian trixie/main amd64 adduser all 3.137 [140 kB] Get:71 http://deb.debian.org/debian trixie/main amd64 gpgv amd64 2.2.43-8 [216 kB] Get:72 http://deb.debian.org/debian trixie/main amd64 debian-archive-keyring all 2023.4 [161 kB] Get:73 http://deb.debian.org/debian trixie/main amd64 libseccomp2 amd64 2.5.5-1+b1 [47.3 kB] Get:74 http://deb.debian.org/debian trixie/main amd64 apt amd64 2.9.8 [1410 kB] Get:75 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get:76 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.19.0-3+b2 [48.9 kB] Get:77 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-7 [57.2 kB] Get:78 http://deb.debian.org/debian trixie/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-2 [186 kB] Get:79 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.62.1-2 [74.9 kB] Get:80 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.9.1-2 [463 kB] Get:81 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1 [23.4 kB] Get:82 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1 [7740 B] Get:83 http://deb.debian.org/debian trixie/main amd64 libssl3t64 amd64 3.2.2-1 [2246 kB] Get:84 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get:85 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:86 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b2 [40.3 kB] Get:87 http://deb.debian.org/debian trixie/main amd64 linux-libc-dev all 6.10.4-1 [2369 kB] Get:88 http://deb.debian.org/debian trixie/main amd64 debianutils amd64 5.20 [89.5 kB] Get:89 http://deb.debian.org/debian trixie/main amd64 bash amd64 5.2.21-2.1+b1 [1498 kB] Get:90 http://deb.debian.org/debian trixie/main amd64 bsdutils amd64 1:2.40.2-1 [104 kB] Get:91 http://deb.debian.org/debian trixie/main amd64 coreutils amd64 9.4-3.1 [2950 kB] Get:92 http://deb.debian.org/debian trixie/main amd64 dash amd64 0.5.12-9 [93.2 kB] Get:93 http://deb.debian.org/debian trixie/main amd64 diffutils amd64 1:3.10-1 [375 kB] Get:94 http://deb.debian.org/debian trixie/main amd64 tar amd64 1.35+dfsg-3 [813 kB] Get:95 http://deb.debian.org/debian trixie/main amd64 dpkg amd64 1.22.11 [1531 kB] Get:96 http://deb.debian.org/debian trixie/main amd64 findutils amd64 4.10.0-3 [700 kB] Get:97 http://deb.debian.org/debian trixie/main amd64 grep amd64 3.11-4 [431 kB] Get:98 http://deb.debian.org/debian trixie/main amd64 gzip amd64 1.12-1.1 [133 kB] Get:99 http://deb.debian.org/debian trixie/main amd64 hostname amd64 3.23+nmu2 [10.6 kB] Get:100 http://deb.debian.org/debian trixie/main amd64 libncursesw6 amd64 6.5-2 [135 kB] Get:101 http://deb.debian.org/debian trixie/main amd64 libtinfo6 amd64 6.5-2 [344 kB] Get:102 http://deb.debian.org/debian trixie/main amd64 ncurses-bin amd64 6.5-2 [433 kB] Get:103 http://deb.debian.org/debian trixie/main amd64 sed amd64 4.9-2 [329 kB] Get:104 http://deb.debian.org/debian trixie/main amd64 libblkid1 amd64 2.40.2-1 [166 kB] Get:105 http://deb.debian.org/debian trixie/main amd64 libmount1 amd64 2.40.2-1 [198 kB] Get:106 http://deb.debian.org/debian trixie/main amd64 libsmartcols1 amd64 2.40.2-1 [138 kB] Get:107 http://deb.debian.org/debian trixie/main amd64 libuuid1 amd64 2.40.2-1 [34.9 kB] Get:108 http://deb.debian.org/debian trixie/main amd64 util-linux amd64 2.40.2-1 [1214 kB] Get:109 http://deb.debian.org/debian trixie/main amd64 util-linux-extra amd64 2.40.2-1 [263 kB] Get:110 http://deb.debian.org/debian trixie/main amd64 usr-is-merged all 39 [5572 B] Get:111 http://deb.debian.org/debian trixie/main amd64 init-system-helpers all 1.66 [39.0 kB] Get:112 http://deb.debian.org/debian trixie/main amd64 ncurses-base all 6.5-2 [270 kB] Get:113 http://deb.debian.org/debian trixie/main amd64 sysvinit-utils amd64 3.10-1 [32.7 kB] Get:114 http://deb.debian.org/debian trixie/main amd64 libgomp1 amd64 14.2.0-1 [137 kB] Get:115 http://deb.debian.org/debian trixie/main amd64 libitm1 amd64 14.2.0-1 [25.9 kB] Get:116 http://deb.debian.org/debian trixie/main amd64 libatomic1 amd64 14.2.0-1 [9280 B] Get:117 http://deb.debian.org/debian trixie/main amd64 libasan8 amd64 14.2.0-1 [2727 kB] Get:118 http://deb.debian.org/debian trixie/main amd64 liblsan0 amd64 14.2.0-1 [1205 kB] Get:119 http://deb.debian.org/debian trixie/main amd64 libisl23 amd64 0.26-3+b2 [652 kB] Get:120 http://deb.debian.org/debian trixie/main amd64 libmpfr6 amd64 4.2.1-1+b1 [714 kB] Get:121 http://deb.debian.org/debian trixie/main amd64 libmpc3 amd64 1.3.1-1+b2 [52.1 kB] Get:122 http://deb.debian.org/debian trixie/main amd64 g++-12 amd64 12.4.0-2 [10.8 MB] Get:123 http://deb.debian.org/debian trixie/main amd64 gcc-12 amd64 12.4.0-2 [19.6 MB] Get:124 http://deb.debian.org/debian trixie/main amd64 cpp-12 amd64 12.4.0-2 [9862 kB] Get:125 http://deb.debian.org/debian trixie/main amd64 libubsan1 amd64 14.2.0-1 [1075 kB] Get:126 http://deb.debian.org/debian trixie/main amd64 libstdc++-12-dev amd64 12.4.0-2 [2081 kB] Get:127 http://deb.debian.org/debian trixie/main amd64 libquadmath0 amd64 14.2.0-1 [145 kB] Get:128 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-1 [837 kB] Get:129 http://deb.debian.org/debian trixie/main amd64 libcc1-0 amd64 14.2.0-1 [42.9 kB] Get:130 http://deb.debian.org/debian trixie/main amd64 libgcc-12-dev amd64 12.4.0-2 [2431 kB] Get:131 http://deb.debian.org/debian trixie/main amd64 libtsan2 amd64 14.2.0-1 [2461 kB] Get:132 http://deb.debian.org/debian trixie/main amd64 gcc-12-base amd64 12.4.0-2 [42.9 kB] Get:133 http://deb.debian.org/debian trixie/main amd64 libgprofng0 amd64 2.43-2 [791 kB] Get:134 http://deb.debian.org/debian trixie/main amd64 libctf0 amd64 2.43-2 [88.2 kB] Get:135 http://deb.debian.org/debian trixie/main amd64 libctf-nobfd0 amd64 2.43-2 [154 kB] Get:136 http://deb.debian.org/debian trixie/main amd64 binutils-x86-64-linux-gnu amd64 2.43-2 [2252 kB] Get:137 http://deb.debian.org/debian trixie/main amd64 libbinutils amd64 2.43-2 [527 kB] Get:138 http://deb.debian.org/debian trixie/main amd64 binutils amd64 2.43-2 [81.3 kB] Get:139 http://deb.debian.org/debian trixie/main amd64 binutils-common amd64 2.43-2 [2632 kB] Get:140 http://deb.debian.org/debian trixie/main amd64 libjansson4 amd64 2.14-2+b2 [39.9 kB] Get:141 http://deb.debian.org/debian trixie/main amd64 libsframe1 amd64 2.43-2 [76.6 kB] Get:142 http://deb.debian.org/debian trixie/main amd64 libhwasan0 amd64 14.2.0-1 [1489 kB] Get:143 http://deb.debian.org/debian trixie/main amd64 libgcc-14-dev amd64 14.2.0-1 [2673 kB] Get:144 http://deb.debian.org/debian trixie/main amd64 libstdc++-14-dev amd64 14.2.0-1 [2341 kB] Get:145 http://deb.debian.org/debian trixie/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get:146 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-3.1 [10.6 MB] Get:147 http://deb.debian.org/debian trixie/main amd64 logsave amd64 1.47.1-1 [22.7 kB] Get:148 http://deb.debian.org/debian trixie/main amd64 libext2fs2t64 amd64 1.47.1-1 [210 kB] Get:149 http://deb.debian.org/debian trixie/main amd64 e2fsprogs amd64 1.47.1-1 [583 kB] Get:150 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-4 [69.3 kB] Get:151 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get:152 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.4-3 [812 kB] Get:153 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.6.2-1 [155 kB] Get:154 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:155 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.4-3 [2137 kB] Get:156 http://deb.debian.org/debian trixie/main amd64 python3-all-dev amd64 3.12.5-1 [1068 B] Get:157 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.12.5-1 [1044 B] Get:158 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 70.3.0-2 [504 kB] Get:159 http://deb.debian.org/debian trixie/main amd64 libpython3-all-dev amd64 3.12.5-1 [1068 B] Get:160 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.12.5-1 [9820 B] Get:161 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.12.5-1 [26.2 kB] Get:162 http://deb.debian.org/debian trixie/main amd64 python3-yaml amd64 6.0.2-1 [134 kB] Get:163 http://deb.debian.org/debian trixie/main amd64 python3-wrapt amd64 1.15.0-2+b2 [43.5 kB] Get:164 http://deb.debian.org/debian trixie/main amd64 python3-ujson amd64 5.10.0-1+b1 [24.7 kB] Get:165 http://deb.debian.org/debian trixie/main amd64 python3-simplejson amd64 3.19.2-1+b2 [61.3 kB] Get:166 http://deb.debian.org/debian trixie/main amd64 python3-scipy amd64 1.13.1-3 [16.7 MB] Get:167 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 2.2.2+dfsg-4+b1 [4115 kB] Get:168 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 2.2.2+dfsg-4 [3095 kB] Get:169 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-11 [4236 kB] Get:170 http://deb.debian.org/debian trixie/main amd64 python3-lazy-object-proxy amd64 1.10.0-3+b1 [25.1 kB] Get:171 http://deb.debian.org/debian trixie/main amd64 python3-h5py-serial amd64 3.11.0-5 [975 kB] Get:172 http://deb.debian.org/debian trixie/main amd64 python3-astroid all 3.2.2-1 [212 kB] Get:173 http://deb.debian.org/debian trixie/main amd64 pylint all 3.2.6-1 [339 kB] Get:174 http://deb.debian.org/debian trixie/main amd64 python3-lib2to3 all 3.12.5-1 [76.9 kB] Get:175 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.5-1 [26.7 kB] Get:176 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.5-1 [27.6 kB] Get:177 http://deb.debian.org/debian trixie/main amd64 libyaml-0-2 amd64 0.2.5-1+b1 [52.6 kB] Get:178 http://deb.debian.org/debian trixie/main amd64 libdouble-conversion3 amd64 3.3.0-1+b1 [41.0 kB] Get:179 http://deb.debian.org/debian trixie/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get:180 http://deb.debian.org/debian trixie/main amd64 libopenblas-pthread-dev amd64 0.3.28+ds-2 [4844 kB] Get:181 http://deb.debian.org/debian trixie/main amd64 libopenblas0-pthread amd64 0.3.28+ds-2 [6897 kB] Get:182 http://deb.debian.org/debian trixie/main amd64 libopenblas0 amd64 0.3.28+ds-2 [40.9 kB] Get:183 http://deb.debian.org/debian trixie/main amd64 libopenblas-dev amd64 0.3.28+ds-2 [54.3 kB] Get:184 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get:185 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get:186 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 70.3.0-2 [264 kB] Get:187 http://deb.debian.org/debian trixie/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b1 [29.1 kB] Get:188 http://deb.debian.org/debian trixie/main amd64 python3-six all 1.16.0-7 [16.4 kB] Get:189 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024a-4 [255 kB] Get:190 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-2 [79.4 kB] Get:191 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get:192 http://deb.debian.org/debian trixie/main amd64 liblzf1 amd64 3.6-4+b1 [10.4 kB] Get:193 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get:194 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get:195 http://deb.debian.org/debian trixie/main amd64 libsqlite3-0 amd64 3.46.0-1 [902 kB] Get:196 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.4-3 [1950 kB] Get:197 http://deb.debian.org/debian trixie/main amd64 libpython3.12t64 amd64 3.12.4-3 [2114 kB] Get:198 http://deb.debian.org/debian trixie/main amd64 libpython3.12-dev amd64 3.12.4-3 [5077 kB] Get:199 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.4-3 [664 kB] Get:200 http://deb.debian.org/debian trixie/main amd64 python3.12-dev amd64 3.12.4-3 [499 kB] Get:201 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 7.4.7-2 [158 kB] Get:202 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get:203 http://deb.debian.org/debian trixie/main amd64 python3-isort all 5.13.2-1 [71.7 kB] Get:204 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.20.0-1 [10.5 kB] Get:205 http://deb.debian.org/debian trixie/main amd64 python3-importlib-metadata all 8.2.0-2 [20.5 kB] Get:206 http://deb.debian.org/debian trixie/main amd64 python3-mypy-extensions all 1.0.0-1 [6064 B] Get:207 http://deb.debian.org/debian trixie/main amd64 python3-logilab-common all 2.0.0-1 [343 kB] Get:208 http://deb.debian.org/debian trixie/main amd64 python3-dill all 0.3.8-1 [81.7 kB] Get:209 http://deb.debian.org/debian trixie/main amd64 python3-platformdirs all 4.2.2-1 [16.3 kB] Get:210 http://deb.debian.org/debian trixie/main amd64 python3-tomlkit all 0.13.0-1 [42.3 kB] Get:211 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.5-1 [9588 B] Get:212 http://deb.debian.org/debian trixie/main amd64 mount amd64 2.40.2-1 [154 kB] Get:213 http://deb.debian.org/debian trixie/main amd64 mawk amd64 1.3.4.20240622-2 [136 kB] Get:214 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20240203 [158 kB] Get:215 http://deb.debian.org/debian trixie/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-1 [11.1 MB] Get:216 http://deb.debian.org/debian trixie/main amd64 g++ amd64 4:14.1.0-2 [1344 B] Get:217 http://deb.debian.org/debian trixie/main amd64 gcc amd64 4:14.1.0-2 [5136 B] Get:218 http://deb.debian.org/debian trixie/main amd64 cpp amd64 4:14.1.0-2 [1568 B] Get:219 http://deb.debian.org/debian trixie/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2 [4784 B] Get:220 http://deb.debian.org/debian trixie/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-1 [21.4 MB] Get:221 http://deb.debian.org/debian trixie/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-1 [12.1 MB] Get:222 http://deb.debian.org/debian trixie/main amd64 cpp-14 amd64 14.2.0-1 [1272 B] Get:223 http://deb.debian.org/debian trixie/main amd64 gcc-14 amd64 14.2.0-1 [520 kB] Get:224 http://deb.debian.org/debian trixie/main amd64 g++-14 amd64 14.2.0-1 [18.5 kB] Get:225 http://deb.debian.org/debian trixie/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2 [1436 B] Get:226 http://deb.debian.org/debian trixie/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2 [1204 B] Get:227 http://deb.debian.org/debian trixie/main amd64 libss2 amd64 1.47.1-1 [27.6 kB] Get:228 http://deb.debian.org/debian trixie/main amd64 xtl-dev all 0.7.5-3 [89.8 kB] Get:229 http://deb.debian.org/debian trixie/main amd64 libxsimd-dev amd64 13.0.0-1 [129 kB] Get:230 http://deb.debian.org/debian trixie/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get:231 http://deb.debian.org/debian trixie/main amd64 python3-certifi all 2024.6.2-1 [157 kB] Get:232 http://deb.debian.org/debian trixie/main amd64 python3-charset-normalizer amd64 3.3.2-2 [116 kB] Get:233 http://deb.debian.org/debian trixie/main amd64 python3-idna all 3.6-2.1 [38.6 kB] Get:234 http://deb.debian.org/debian trixie/main amd64 python3-urllib3 all 2.0.7-2 [111 kB] Get:235 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:236 http://deb.debian.org/debian trixie/main amd64 python3-requests all 2.31.0+dfsg-2 [68.7 kB] Get:237 http://deb.debian.org/debian trixie/main amd64 python3-typechecks all 0.1.0+ds-4 [4580 B] Get:238 http://deb.debian.org/debian trixie/main amd64 python3-datacache all 1.2.1-2 [12.7 kB] Get:239 http://deb.debian.org/debian trixie/main amd64 python3-serializable all 0.4.1+ds-1 [8368 B] Get:240 http://deb.debian.org/debian trixie/main amd64 pyensembl all 2.3.13-1 [36.6 kB] Get:241 http://deb.debian.org/debian trixie/main amd64 python3-h5py all 3.11.0-5 [14.7 kB] Get:242 http://deb.debian.org/debian trixie/main amd64 python3-mock all 5.1.0-1 [70.2 kB] Get:243 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.3.0-1 [62.0 kB] Get:244 http://deb.debian.org/debian trixie/main amd64 python3-zombie-imp all 0.0.2-2 [11.7 kB] Get:245 http://deb.debian.org/debian trixie/main amd64 python3-nose all 1.3.7-13 [130 kB] Get:246 http://deb.debian.org/debian trixie/main amd64 python3-pbr all 6.0.0-2 [55.8 kB] Get:247 http://deb.debian.org/debian trixie/main amd64 python3-ply all 3.11-7 [62.6 kB] Get:248 http://deb.debian.org/debian trixie/main amd64 python3-pythran amd64 0.16.1+ds-3 [447 kB] Get:249 http://deb.debian.org/debian trixie/main amd64 xpore all 2.1-2 [34.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 232 MB in 2s (100 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34910 files and directories currently installed.) Removing libtirpc3:amd64 (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3t64:amd64. (Reading database ... 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Preparing to unpack .../1-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) over (1.20.1-2+deb12u1) ... Preparing to unpack .../2-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) over (1.20.1-2+deb12u1) ... Preparing to unpack .../3-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) over (1.20.1-2+deb12u1) ... Preparing to unpack .../4-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) over (1.20.1-2+deb12u1) ... Preparing to unpack .../5-libzstd1_1.5.6+dfsg-1_amd64.deb ... Unpacking libzstd1:amd64 (1.5.6+dfsg-1) over (1.5.4+dfsg2-5) ... Setting up libzstd1:amd64 (1.5.6+dfsg-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34916 files and directories currently installed.) Preparing to unpack .../openssl_3.2.2-1_amd64.deb ... Unpacking openssl (3.2.2-1) over (3.0.13-1~deb12u1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../libunistring5_1.2-1_amd64.deb ... Unpacking libunistring5:amd64 (1.2-1) ... Setting up libunistring5:amd64 (1.2-1) ... dpkg: libhdf5-103-1:amd64: dependency problems, but removing anyway as you requested: python3-h5py-serial depends on libhdf5-103-1. libhdf5-hl-100:amd64 depends on libhdf5-103-1. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34942 files and directories currently installed.) Removing libhdf5-103-1:amd64 (1.10.8+repack1-1) ... Selecting previously unselected package libhdf5-103-1t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34934 files and directories currently installed.) Preparing to unpack .../libhdf5-103-1t64_1.10.10+repack-4_amd64.deb ... Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-4) ... dpkg: libhdf5-hl-100:amd64: dependency problems, but removing anyway as you requested: python3-h5py-serial depends on libhdf5-hl-100. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34943 files and directories currently installed.) Removing libhdf5-hl-100:amd64 (1.10.8+repack1-1) ... Selecting previously unselected package libhdf5-hl-100t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34936 files and directories currently installed.) Preparing to unpack .../libhdf5-hl-100t64_1.10.10+repack-4_amd64.deb ... Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34944 files and directories currently installed.) Removing libcurl4:amd64 (7.88.1-10+deb12u6) ... Removing libpsl5:amd64 (0.21.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34932 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.7-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.7-2) over (2.3.3-1+b1) ... Setting up libidn2-0:amd64 (2.3.7-2) ... Selecting previously unselected package libpsl5t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34932 files and directories currently installed.) Preparing to unpack .../libpsl5t64_0.21.2-1.1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1) ... Preparing to unpack .../zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1) over (1:1.2.13.dfsg-1) ... Preparing to unpack .../zlib1g_1%3a1.3.dfsg+really1.3.1-1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.3.dfsg+really1.3.1-1) over (1:1.2.13.dfsg-1) ... Setting up zlib1g:amd64 (1:1.3.dfsg+really1.3.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34939 files and directories currently installed.) Removing libssh2-1:amd64 (1.10.0-3+b1) ... Selecting previously unselected package libssh2-1t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34930 files and directories currently installed.) Preparing to unpack .../libssh2-1t64_1.11.0-7_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.0-7) ... Preparing to unpack .../libbrotli1_1.1.0-2+b4_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b4) over (1.0.9-2+b6) ... Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-2+b1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.3.0+dfsg-2+b1) over (2:6.2.1+dfsg1-1.1) ... Setting up libgmp10:amd64 (2:6.3.0+dfsg-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34941 files and directories currently installed.) Preparing to unpack .../librtmp1_2.4+20151223.gitfa8646d.1-2+b4_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) over (2.4+20151223.gitfa8646d.1-2+b2) ... Preparing to unpack .../libc6_2.39-7_amd64.deb ... Unpacking libc6:amd64 (2.39-7) over (2.36-9+deb12u7) ... Setting up libc6:amd64 (2.39-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34943 files and directories currently installed.) Preparing to unpack .../libc-bin_2.39-7_amd64.deb ... Unpacking libc-bin (2.39-7) over (2.36-9+deb12u7) ... Setting up libc-bin (2.39-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34943 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.50-3_amd64.deb ... Unpacking libgpg-error0:amd64 (1.50-3) over (1.46-1) ... Setting up libgpg-error0:amd64 (1.50-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34943 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.11.0-6_amd64.deb ... Unpacking libgcrypt20:amd64 (1.11.0-6) over (1.10.1-3) ... Setting up libgcrypt20:amd64 (1.11.0-6) ... Selecting previously unselected package gcc-14-base:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34943 files and directories currently installed.) Preparing to unpack .../gcc-14-base_14.2.0-1_amd64.deb ... Unpacking gcc-14-base:amd64 (14.2.0-1) ... Setting up gcc-14-base:amd64 (14.2.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34948 files and directories currently installed.) Preparing to unpack .../libgcc-s1_14.2.0-1_amd64.deb ... Unpacking libgcc-s1:amd64 (14.2.0-1) over (12.2.0-14) ... Setting up libgcc-s1:amd64 (14.2.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34948 files and directories currently installed.) Preparing to unpack .../libstdc++6_14.2.0-1_amd64.deb ... Unpacking libstdc++6:amd64 (14.2.0-1) over (12.2.0-14) ... Setting up libstdc++6:amd64 (14.2.0-1) ... dpkg: libnettle8:amd64: dependency problems, but removing anyway as you requested: libhogweed6:amd64 depends on libnettle8. libgnutls30:amd64 depends on libnettle8 (>= 3.7~). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34948 files and directories currently installed.) Removing libnettle8:amd64 (3.8.1-2) ... Selecting previously unselected package libnettle8t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34940 files and directories currently installed.) Preparing to unpack .../libnettle8t64_3.10-1_amd64.deb ... Unpacking libnettle8t64:amd64 (3.10-1) ... Setting up libnettle8t64:amd64 (3.10-1) ... dpkg: libhogweed6:amd64: dependency problems, but removing anyway as you requested: libgnutls30:amd64 depends on libhogweed6 (>= 3.6). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34949 files and directories currently installed.) Removing libhogweed6:amd64 (3.8.1-2) ... Selecting previously unselected package libhogweed6t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34943 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.10-1_amd64.deb ... Unpacking libhogweed6t64:amd64 (3.10-1) ... Setting up libhogweed6t64:amd64 (3.10-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34950 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.25.5-2_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-2) over (0.24.1-2) ... Setting up libp11-kit0:amd64 (0.25.5-2) ... dpkg: libgnutls30:amd64: dependency problems, but removing anyway as you requested: libldap-2.5-0:amd64 depends on libgnutls30 (>= 3.7.5). apt depends on libgnutls30 (>= 3.7.5). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34950 files and directories currently installed.) Removing libgnutls30:amd64 (3.7.9-2+deb12u3) ... Selecting previously unselected package libgnutls30t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34921 files and directories currently installed.) Preparing to unpack .../libgnutls30t64_3.8.6-2_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.6-2) ... Setting up libgnutls30t64:amd64 (3.8.6-2) ... dpkg: libapt-pkg6.0:amd64: dependency problems, but removing anyway as you requested: apt depends on libapt-pkg6.0 (>= 2.6.1). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34950 files and directories currently installed.) Removing libapt-pkg6.0:amd64 (2.6.1) ... Selecting previously unselected package libapt-pkg6.0t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34901 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.9.8_amd64.deb ... Unpacking libapt-pkg6.0t64:amd64 (2.9.8) ... Setting up libapt-pkg6.0t64:amd64 (2.9.8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34951 files and directories currently installed.) Preparing to unpack .../libbz2-1.0_1.0.8-6_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.8-6) over (1.0.8-5+b1) ... Setting up libbz2-1.0:amd64 (1.0.8-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34950 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.2-2+b1_amd64.deb ... Unpacking libxxhash0:amd64 (0.8.2-2+b1) over (0.8.1-1) ... Setting up libxxhash0:amd64 (0.8.2-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34951 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.9.4-3_amd64.deb ... Unpacking liblz4-1:amd64 (1.9.4-3) over (1.9.4-1) ... Setting up liblz4-1:amd64 (1.9.4-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34951 files and directories currently installed.) Preparing to unpack .../liblzma5_5.6.2-2_amd64.deb ... Unpacking liblzma5:amd64 (5.6.2-2) over (5.4.1-0.2) ... Setting up liblzma5:amd64 (5.6.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34951 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.66-5_amd64.deb ... Unpacking libcap2:amd64 (1:2.66-5) over (1:2.66-4) ... Setting up libcap2:amd64 (1:2.66-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34951 files and directories currently installed.) Preparing to unpack .../libsystemd0_256.5-1_amd64.deb ... Unpacking libsystemd0:amd64 (256.5-1) over (252.26-1~deb12u2) ... Setting up libsystemd0:amd64 (256.5-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34959 files and directories currently installed.) Preparing to unpack .../libcrypt1_1%3a4.4.36-5_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.36-5) over (1:4.4.33-2) ... Setting up libcrypt1:amd64 (1:4.4.36-5) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34961 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.3-7_amd64.deb ... Unpacking libpam-modules-bin (1.5.3-7) over (1.5.2-6+deb12u1) ... Setting up libpam-modules-bin (1.5.3-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34960 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.3-7_amd64.deb ... Unpacking libpam-modules:amd64 (1.5.3-7) over (1.5.2-6+deb12u1) ... dpkg: warning: unable to delete old directory '/lib/x86_64-linux-gnu/security': Directory not empty Setting up libpam-modules:amd64 (1.5.3-7) ... Installing new version of config file /etc/security/namespace.init ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34921 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.5-1_all.deb ... Unpacking libsemanage-common (3.5-1) over (3.4-1) ... Setting up libsemanage-common (3.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34921 files and directories currently installed.) Preparing to unpack .../libsepol2_3.7-1_amd64.deb ... Unpacking libsepol2:amd64 (3.7-1) over (3.4-2.1) ... Setting up libsepol2:amd64 (3.7-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34921 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.5-1+b4_amd64.deb ... Unpacking libsemanage2:amd64 (3.5-1+b4) over (3.4-1+b5) ... Setting up libsemanage2:amd64 (3.5-1+b4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34921 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.15.3-2_amd64.deb ... Unpacking passwd (1:4.15.3-2) over (1:4.13+dfsg1-1+b1) ... Setting up passwd (1:4.15.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34914 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.137_all.deb ... Unpacking adduser (3.137) over (3.134) ... Setting up adduser (3.137) ... Installing new version of config file /etc/adduser.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34908 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.43-8_amd64.deb ... Unpacking gpgv (2.2.43-8) over (2.2.40-1.1) ... Setting up gpgv (2.2.43-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34908 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2023.4_all.deb ... Unpacking debian-archive-keyring (2023.4) over (2023.3+deb12u1) ... Setting up debian-archive-keyring (2023.4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34908 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.5-1+b1_amd64.deb ... Unpacking libseccomp2:amd64 (2.5.5-1+b1) over (2.5.4-1+deb12u1) ... Setting up libseccomp2:amd64 (2.5.5-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34909 files and directories currently installed.) Preparing to unpack .../archives/apt_2.9.8_amd64.deb ... Unpacking apt (2.9.8) over (2.6.1) ... Setting up apt (2.9.8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34905 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.6-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.6-1) over (3.4.4-1) ... Setting up libffi8:amd64 (3.4.6-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 34905 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.19.0-3+b2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.19.0-3+b2) over (4.19.0-2) ... Setting up libtasn1-6:amd64 (4.19.0-3+b2) ... (Reading database ... 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Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../3-libcurl4t64_8.9.1-2_amd64.deb ... Unpacking libcurl4t64:amd64 (8.9.1-2) ... Preparing to unpack .../4-libaec0_1.1.3-1_amd64.deb ... Unpacking libaec0:amd64 (1.1.3-1) over (1.0.6-1+b1) ... Preparing to unpack .../5-libsz2_1.1.3-1_amd64.deb ... Unpacking libsz2:amd64 (1.1.3-1) over (1.0.6-1+b1) ... dpkg: libssl3:amd64: dependency problems, but removing anyway as you requested: libpython3.11-minimal:amd64 depends on libssl3 (>= 3.0.0). (Reading database ... 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Setting up bash (5.2.21-2.1+b1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 36592 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.40.2-1_amd64.deb ... Unpacking bsdutils (1:2.40.2-1) over (1:2.38.1-5+deb12u1) ... Setting up bsdutils (1:2.40.2-1) ... (Reading database ... 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Adding 'diversion of /sbin/ctrlaltdel to /sbin/ctrlaltdel.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/fsck.cramfs to /sbin/fsck.cramfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/fsck.minix to /sbin/fsck.minix.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.bfs to /sbin/mkfs.bfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.cramfs to /sbin/mkfs.cramfs.usr-is-merged by util-linux-extra' Adding 'diversion of /sbin/mkfs.minix to /sbin/mkfs.minix.usr-is-merged by util-linux-extra' Unpacking util-linux-extra (2.40.2-1) over (2.38.1-5+deb12u1) ... dpkg: warning: unable to delete old directory '/usr/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/usr/lib/udev': Directory not empty dpkg: warning: unable to delete old directory '/etc/init.d': Directory not empty Setting up util-linux-extra (2.40.2-1) ... (Reading database ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:amd64 (1.47.1-1) ... Setting up libcom-err2:amd64 (1.47.1-1) ... Setting up libext2fs2t64:amd64 (1.47.1-1) ... (Reading database ... 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"""nose configuration. /usr/lib/python3/dist-packages/nose/ext/dtcompat.py:686: SyntaxWarning: invalid escape sequence '\S' _INDENT_RE = re.compile('^([ ]*)(?=\S)', re.MULTILINE) /usr/lib/python3/dist-packages/nose/ext/dtcompat.py:1021: SyntaxWarning: invalid escape sequence '\s' pat = re.compile('(^|.*:)\s*\w*("|\')') /usr/lib/python3/dist-packages/nose/ext/dtcompat.py:1430: SyntaxWarning: invalid escape sequence '\s' want = re.sub('(?m)^%s\s*?$' % re.escape(BLANKLINE_MARKER), /usr/lib/python3/dist-packages/nose/ext/dtcompat.py:1434: SyntaxWarning: invalid escape sequence '\s' got = re.sub('(?m)^\s*?$', '', got) /usr/lib/python3/dist-packages/nose/inspector.py:110: SyntaxWarning: invalid escape sequence '\ ' """Find lines in home that are inspectable. Setting up gcc (4:14.1.0-2) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up libpython3-all-dev:amd64 (3.12.5-1) ... Setting up python3-dev (3.12.5-1) ... Setting up python3-requests (2.31.0+dfsg-2) ... 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Running hooks in /etc/ca-certificates/update.d... done. 2m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-get', '-yf', 'dist-upgrade'] 2m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m34.1s DUMP: 7e6a2b13f9a36fe50b12d30d67e22c7e - 2m34.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m34.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-cache', 'show', '--no-all-versions', 'xpore'] 2m34.6s DUMP: Package: xpore Version: 2.1-2 Installed-Size: 160 Maintainer: Debian Med Packaging Team Architecture: all Depends: pyensembl, python3-h5py, python3-numpy, python3-pandas, python3-scipy, python3-ujson, python3-yaml, python3:any Suggests: xpore-doc Description-en: Nanopore analysis of differential RNA modifications RNA is transcribed from DNA, possibly spliced and exported to the cytoplasm - fine - but its bases can also be modified, edited, and not all such modifications are visible by Sanger sequencing methods and its derivatives. . The Nanopore measures potentials, and if the bases have a different shape then this is measured - not necessarily in an interpretable manner, something must be left for mass spectrometry, but one may be pointed to a difference. And maybe one can even statistically associate such differences with a molecular or clinical phenotype. Description-md5: 0493c5291452f14d39a3ce9aeea20ba2 Homepage: https://github.com/GoekeLab/xpore/ Section: science Priority: optional Filename: pool/main/x/xpore/xpore_2.1-2_all.deb Size: 34744 MD5sum: 5bd8c47a037fe2c4c8ab7e0ea8cc93dc SHA256: 8f56089b74752a027e9d7280e42584548f8c3d543b98c89f1e191c2d2799ba8e 2m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-cache', 'show', '--no-all-versions', 'xpore'] 2m34.6s INFO: apt-cache knows about the following packages: xpore 2m34.6s INFO: Running scripts pre_install 2m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_database-server'] 2m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_database-server'] 2m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_exceptions'] 2m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_exceptions'] 2m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_extras'] 2m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_extras'] 2m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_foreign_architecture'] 2m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_foreign_architecture'] 2m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-cache', 'policy'] 2m34.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release o=Debian,a=testing,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m34.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-cache', 'policy'] 2m34.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-cache', 'policy', 'xpore'] 2m34.7s DUMP: xpore: Installed: 2.1-2 Candidate: 2.1-2 Version table: *** 2.1-2 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 100 /var/lib/dpkg/status 2m34.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-cache', 'policy', 'xpore'] 2m34.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-get', '-y', 'install', 'xpore'] 2m35.4s DUMP: Reading package lists... Building dependency tree... Reading state information... xpore is already the newest version (2.1-2). The following packages were automatically installed and are no longer required: libboost-dev libboost1.83-dev libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libpython3-all-dev libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libtirpc-common libtirpc-dev libtirpc3t64 libxsimd-dev python3-all python3-all-dev python3-beniget python3-gast python3-lazy-object-proxy python3-lib2to3 python3-mock python3-more-itertools python3-nose python3-pbr python3-ply python3-pythran python3-toml python3-wrapt python3-zombie-imp python3.11 python3.11-dev python3.11-minimal xtl-dev Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-get', '-y', 'install', 'xpore'] 2m35.4s INFO: Running scripts post_install 2m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_install_exceptions'] 2m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_install_exceptions'] 2m35.4s INFO: Running scripts post_distupgrade 2m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_distupgrade_exceptions'] 2m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_distupgrade_exceptions'] 2m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_distupgrade_zz_backports'] 2m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_distupgrade_zz_backports'] 2m35.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb04q5riy'] 2m37.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb04q5riy'] 2m37.2s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpb04q5riy to sid 2m37.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 2m37.2s INFO: Running scripts pre_distupgrade 2m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 2m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 2m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_distupgrade_exceptions'] 2m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_distupgrade_exceptions'] 2m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 2m37.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 2m37.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_distupgrade_zz_database-server'] 2m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_distupgrade_zz_database-server'] 2m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 2m37.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 2m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-get', 'update'] 2m41.4s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9953 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7301 kB] Fetched 17.5 MB in 3s (5817 kB/s) Reading package lists... 2m41.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-get', 'update'] 2m41.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-get', '-yf', 'dist-upgrade'] 3m12.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libboost-dev libboost1.83-dev libnsl-dev libopenblas-dev libopenblas-pthread-dev libopenblas0 libpython3-all-dev libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.11t64 libtirpc-dev libxsimd-dev python3-all python3-all-dev python3-beniget python3-gast python3-lazy-object-proxy python3-lib2to3 python3-mock python3-nose python3-pbr python3-ply python3-pythran python3-toml python3-wrapt python3-zombie-imp python3.11 python3.11-dev python3.11-minimal xtl-dev Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libpython3.11 The following NEW packages will be installed: libpython3.11t64 login.defs openssl-provider-legacy python3-autocommand python3-inflect python3-jaraco.context python3-jaraco.functools python3-typeguard The following packages will be upgraded: bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils cpp-14 cpp-14-x86-64-linux-gnu g++-14 g++-14-x86-64-linux-gnu gcc-14 gcc-14-base gcc-14-x86-64-linux-gnu libasan8 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libcc1-0 libctf-nobfd0 libctf0 libgcc-14-dev libgcc-s1 libgfortran5 libgomp1 libgprofng0 libhwasan0 libitm1 libjs-sphinxdoc libldap-2.5-0 liblsan0 libmount1 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libquadmath0 libreadline8t64 libselinux1 libsframe1 libsmartcols1 libsqlite3-0 libssl3t64 libstdc++-14-dev libstdc++6 libtsan2 libubsan1 libuuid1 linux-libc-dev login mawk mount openssl passwd python3-lib2to3 python3-pkg-resources python3-requests python3-scipy python3-setuptools python3-simplejson python3-tomlkit python3.11 python3.11-dev python3.11-minimal python3.12 python3.12-dev python3.12-minimal readline-common util-linux util-linux-extra 73 upgraded, 8 newly installed, 1 to remove and 0 not upgraded. Need to get 125 MB of archives. After this operation, 1714 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2.32-1 [1499 kB] Get:2 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.40.2-7 [105 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:4.0.1-1 [12.3 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.0.1-1 [54.5 kB] Get:5 http://deb.debian.org/debian sid/main amd64 util-linux-extra amd64 2.40.2-7 [265 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.40.2-7 [35.3 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.40.2-7 [167 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.40.2-7 [199 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.40.2-7 [139 kB] Get:10 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.40.2-7 [1217 kB] Get:11 http://deb.debian.org/debian sid/main amd64 mount amd64 2.40.2-7 [154 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.7-1+b1 [76.6 kB] Get:13 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-5 [69.3 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-1 [913 kB] Get:16 http://deb.debian.org/debian sid/main amd64 python3.11-dev amd64 3.11.9-1 [501 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libpython3.11-dev amd64 3.11.9-1 [4513 kB] Get:18 http://deb.debian.org/debian sid/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get:20 http://deb.debian.org/debian sid/main amd64 openssl-provider-legacy amd64 3.3.1-7 [298 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.3.1-7 [2269 kB] Get:22 http://deb.debian.org/debian sid/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libpython3.11t64 amd64 3.11.9-1 [1960 kB] Get:25 http://deb.debian.org/debian sid/main amd64 login.defs all 1:4.16.0-4 [185 kB] Get:26 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.40.2-7 [57.7 kB] Get:27 http://deb.debian.org/debian sid/main amd64 python3.12-dev amd64 3.12.5-4 [499 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libpython3.12-dev amd64 3.12.5-4 [5126 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libpython3.12t64 amd64 3.12.5-4 [2149 kB] Get:30 http://deb.debian.org/debian sid/main amd64 python3.12 amd64 3.12.5-4 [667 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libpython3.12-stdlib amd64 3.12.5-4 [1960 kB] Get:32 http://deb.debian.org/debian sid/main amd64 python3.12-minimal amd64 3.12.5-4 [2168 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libpython3.12-minimal amd64 3.12.5-4 [812 kB] Get:34 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.16.0-4 [1232 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libcc1-0 amd64 14.2.0-3 [42.9 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libgprofng0 amd64 2.43.1-2 [797 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libctf0 amd64 2.43.1-2 [88.2 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libctf-nobfd0 amd64 2.43.1-2 [154 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libbinutils amd64 2.43.1-2 [528 kB] Get:40 http://deb.debian.org/debian sid/main amd64 binutils amd64 2.43.1-2 [67.6 kB] Get:41 http://deb.debian.org/debian sid/main amd64 binutils-common amd64 2.43.1-2 [2631 kB] Get:42 http://deb.debian.org/debian sid/main amd64 binutils-x86-64-linux-gnu amd64 2.43.1-2 [2252 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.2.0-3 [137 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 14.2.0-3 [25.9 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14.2.0-3 [9288 B] Get:46 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 14.2.0-3 [2728 kB] Get:47 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 14.2.0-3 [1205 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 14.2.0-3 [2461 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 14.2.0-3 [1075 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 14.2.0-3 [1488 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 14.2.0-3 [145 kB] Get:52 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.2.0-3 [46.2 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14.2.0-3 [713 kB] Get:54 http://deb.debian.org/debian sid/main amd64 gcc-14 amd64 14.2.0-3 [522 kB] Get:55 http://deb.debian.org/debian sid/main amd64 g++-14 amd64 14.2.0-3 [19.1 kB] Get:56 http://deb.debian.org/debian sid/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-3 [12.1 MB] Get:57 http://deb.debian.org/debian sid/main amd64 libstdc++-14-dev amd64 14.2.0-3 [2365 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libgcc-14-dev amd64 14.2.0-3 [2671 kB] Get:59 http://deb.debian.org/debian sid/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-3 [21.4 MB] Get:60 http://deb.debian.org/debian sid/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-3 [11.1 MB] Get:61 http://deb.debian.org/debian sid/main amd64 cpp-14 amd64 14.2.0-3 [1272 B] Get:62 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.2.0-3 [837 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14.2.0-3 [72.8 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libsframe1 amd64 2.43.1-2 [76.9 kB] Get:65 http://deb.debian.org/debian sid/main amd64 mawk amd64 1.3.4.20240819-2 [138 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libjs-sphinxdoc all 7.4.7-3 [158 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3 [187 kB] Get:68 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 6.10.6-1 [2376 kB] Get:69 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.3.1-7 [1381 kB] Get:70 http://deb.debian.org/debian sid/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get:71 http://deb.debian.org/debian sid/main amd64 python3-typeguard all 4.3.0-1 [36.5 kB] Get:72 http://deb.debian.org/debian sid/main amd64 python3-inflect all 7.3.1-1 [42.2 kB] Get:73 http://deb.debian.org/debian sid/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get:74 http://deb.debian.org/debian sid/main amd64 python3-jaraco.functools all 4.0.2-1 [11.7 kB] Get:75 http://deb.debian.org/debian sid/main amd64 python3-lib2to3 all 3.12.5-3 [77.0 kB] Get:76 http://deb.debian.org/debian sid/main amd64 python3-setuptools all 73.0.1-1 [748 kB] Get:77 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 73.0.1-1 [212 kB] Get:78 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get:79 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.13.1-4 [16.7 MB] Get:80 http://deb.debian.org/debian sid/main amd64 python3-simplejson amd64 3.19.3-1 [61.2 kB] Get:81 http://deb.debian.org/debian sid/main amd64 python3-tomlkit all 0.13.2-1 [42.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 125 MB in 1s (118 MB/s) (Reading database ... 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Leaving 'diversion of /sbin/ctrlaltdel to /sbin/ctrlaltdel.usr-is-merged by util-linux-extra' Leaving 'diversion of /sbin/fsck.cramfs to /sbin/fsck.cramfs.usr-is-merged by util-linux-extra' Leaving 'diversion of /sbin/fsck.minix to /sbin/fsck.minix.usr-is-merged by util-linux-extra' Leaving 'diversion of /sbin/mkfs.bfs to /sbin/mkfs.bfs.usr-is-merged by util-linux-extra' Leaving 'diversion of /sbin/mkfs.cramfs to /sbin/mkfs.cramfs.usr-is-merged by util-linux-extra' Leaving 'diversion of /sbin/mkfs.minix to /sbin/mkfs.minix.usr-is-merged by util-linux-extra' Unpacking util-linux-extra (2.40.2-7) over (2.40.2-1) ... Preparing to unpack .../libuuid1_2.40.2-7_amd64.deb ... Unpacking libuuid1:amd64 (2.40.2-7) over (2.40.2-1) ... Setting up libuuid1:amd64 (2.40.2-7) ... (Reading database ... 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Unpacking python3-simplejson (3.19.3-1) over (3.19.2-1+b2) ... Preparing to unpack .../17-python3-tomlkit_0.13.2-1_all.deb ... Unpacking python3-tomlkit (0.13.2-1) over (0.13.0-1) ... Setting up python3-jaraco.functools (4.0.2-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up libsqlite3-0:amd64 (3.46.1-1) ... Setting up python3-typeguard (4.3.0-1) ... Setting up libpython3.12-minimal:amd64 (3.12.5-4) ... Setting up binutils-common:amd64 (2.43.1-2) ... Setting up linux-libc-dev (6.10.6-1) ... Setting up libctf-nobfd0:amd64 (2.43.1-2) ... Setting up libgomp1:amd64 (14.2.0-3) ... Setting up python3-autocommand (2.2.2-3) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3) ... Setting up libsframe1:amd64 (2.43.1-2) ... Setting up python3-simplejson (3.19.3-1) ... Setting up python3-inflect (7.3.1-1) ... Setting up libquadmath0:amd64 (14.2.0-3) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up libatomic1:amd64 (14.2.0-3) ... Setting up cpp-14-x86-64-linux-gnu (14.2.0-3) ... Setting up libjs-sphinxdoc (7.4.7-3) ... Setting up libgfortran5:amd64 (14.2.0-3) ... Setting up cpp-14 (14.2.0-3) ... Setting up libubsan1:amd64 (14.2.0-3) ... Setting up mount (2.40.2-7) ... Setting up libhwasan0:amd64 (14.2.0-3) ... Setting up libasan8:amd64 (14.2.0-3) ... Setting up mawk (1.3.4.20240819-2) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libtsan2:amd64 (14.2.0-3) ... Setting up libbinutils:amd64 (2.43.1-2) ... Setting up python3-tomlkit (0.13.2-1) ... Setting up openssl (3.3.1-7) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up python3-lib2to3 (3.12.5-3) ... Setting up readline-common (8.2-5) ... Setting up libcc1-0:amd64 (14.2.0-3) ... Setting up liblsan0:amd64 (14.2.0-3) ... Setting up libitm1:amd64 (14.2.0-3) ... Setting up util-linux-extra (2.40.2-7) ... Setting up login (1:4.16.0-2+really2.40.2-7) ... Setting up libctf0:amd64 (2.43.1-2) ... Setting up python3-pkg-resources (73.0.1-1) ... Setting up python3.11-minimal (3.11.9-1) ... Setting up python3.12-minimal (3.12.5-4) ... Setting up python3-scipy (1.13.1-4) ... Setting up python3-setuptools (73.0.1-1) ... Setting up libgprofng0:amd64 (2.43.1-2) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up libgcc-14-dev:amd64 (14.2.0-3) ... Setting up libstdc++-14-dev:amd64 (14.2.0-3) ... Setting up binutils-x86-64-linux-gnu (2.43.1-2) ... Setting up libpython3.12-stdlib:amd64 (3.12.5-4) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up python3.12 (3.12.5-4) ... Setting up libpython3.11t64:amd64 (3.11.9-1) ... Setting up binutils (2.43.1-2) ... Setting up libpython3.12t64:amd64 (3.12.5-4) ... Setting up libpython3.11-dev:amd64 (3.11.9-1) ... Setting up gcc-14-x86-64-linux-gnu (14.2.0-3) ... Setting up python3.11 (3.11.9-1) ... Setting up python3.11-dev (3.11.9-1) ... Setting up libpython3.12-dev:amd64 (3.12.5-4) ... Setting up gcc-14 (14.2.0-3) ... Setting up python3.12-dev (3.12.5-4) ... Setting up g++-14-x86-64-linux-gnu (14.2.0-3) ... Setting up g++-14 (14.2.0-3) ... Processing triggers for debianutils (5.20) ... Processing triggers for libc-bin (2.39-7) ... 3m12.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-get', '-yf', 'dist-upgrade'] 3m12.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 3m12.4s DUMP: ca471e2c897513b29c31c8c4eb406e89 - 3m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 3m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-cache', 'show', '--no-all-versions', 'xpore'] 3m12.7s DUMP: Package: xpore Version: 2.1-2 Installed-Size: 160 Maintainer: Debian Med Packaging Team Architecture: all Depends: pyensembl, python3-h5py, python3-numpy, python3-pandas, python3-scipy, python3-ujson, python3-yaml, python3:any Suggests: xpore-doc Description-en: Nanopore analysis of differential RNA modifications RNA is transcribed from DNA, possibly spliced and exported to the cytoplasm - fine - but its bases can also be modified, edited, and not all such modifications are visible by Sanger sequencing methods and its derivatives. . The Nanopore measures potentials, and if the bases have a different shape then this is measured - not necessarily in an interpretable manner, something must be left for mass spectrometry, but one may be pointed to a difference. And maybe one can even statistically associate such differences with a molecular or clinical phenotype. Description-md5: 0493c5291452f14d39a3ce9aeea20ba2 Homepage: https://github.com/GoekeLab/xpore/ Section: science Priority: optional Filename: pool/main/x/xpore/xpore_2.1-2_all.deb Size: 34744 MD5sum: 5bd8c47a037fe2c4c8ab7e0ea8cc93dc SHA256: 8f56089b74752a027e9d7280e42584548f8c3d543b98c89f1e191c2d2799ba8e 3m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-cache', 'show', '--no-all-versions', 'xpore'] 3m12.7s INFO: apt-cache knows about the following packages: xpore 3m12.7s INFO: Running scripts pre_install 3m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_database-server'] 3m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_database-server'] 3m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_exceptions'] 3m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_exceptions'] 3m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_extras'] 3m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_extras'] 3m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_foreign_architecture'] 3m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_foreign_architecture'] 3m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-cache', 'policy'] 3m12.9s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 3m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-cache', 'policy'] 3m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-cache', 'policy', 'xpore'] 3m12.9s DUMP: xpore: Installed: 2.1-2 Candidate: 2.1-2 Version table: *** 2.1-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 3m12.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-cache', 'policy', 'xpore'] 3m12.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-get', '-y', 'install', 'xpore'] 3m13.7s DUMP: Reading package lists... Building dependency tree... Reading state information... xpore is already the newest version (2.1-2). The following packages were automatically installed and are no longer required: libboost-dev libboost1.83-dev libnsl-dev libopenblas-dev libopenblas-pthread-dev libopenblas0 libpython3-all-dev libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.11t64 libtirpc-dev libxsimd-dev python3-all python3-all-dev python3-beniget python3-gast python3-lazy-object-proxy python3-lib2to3 python3-mock python3-nose python3-pbr python3-ply python3-pythran python3-toml python3-wrapt python3-zombie-imp python3.11 python3.11-dev python3.11-minimal xtl-dev Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-get', '-y', 'install', 'xpore'] 3m13.7s INFO: Running scripts post_install 3m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_install_exceptions'] 3m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_install_exceptions'] 3m13.7s INFO: Running scripts post_distupgrade 3m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_distupgrade_base_cleanup'] 3m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_distupgrade_base_cleanup'] 3m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_distupgrade_exceptions'] 3m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_distupgrade_exceptions'] 3m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 3m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 3m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_distupgrade_squeeze-backports'] 3m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_distupgrade_squeeze-backports'] 3m13.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_distupgrade_zz_backports'] 3m13.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_distupgrade_zz_backports'] 3m13.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb04q5riy'] 3m15.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb04q5riy'] 3m15.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb04q5riy'] 3m16.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb04q5riy'] 3m16.4s INFO: Running scripts pre_install 3m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_database-server'] 3m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_database-server'] 3m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_exceptions'] 3m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_exceptions'] 3m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_extras'] 3m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_extras'] 3m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_foreign_architecture'] 3m16.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_foreign_architecture'] 3m16.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-cache', 'policy'] 3m16.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 3m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-cache', 'policy'] 3m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-cache', 'policy', 'xpore'] 3m16.6s DUMP: xpore: Installed: 2.1-2 Candidate: 2.1-2 Version table: *** 2.1-2 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 3m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-cache', 'policy', 'xpore'] 3m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-get', '-y', 'install', 'xpore=2.1-2'] 3m17.4s DUMP: Reading package lists... Building dependency tree... Reading state information... xpore is already the newest version (2.1-2). The following packages were automatically installed and are no longer required: libboost-dev libboost1.83-dev libnsl-dev libopenblas-dev libopenblas-pthread-dev libopenblas0 libpython3-all-dev libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.11t64 libtirpc-dev libxsimd-dev python3-all python3-all-dev python3-beniget python3-gast python3-lazy-object-proxy python3-lib2to3 python3-mock python3-nose python3-pbr python3-ply python3-pythran python3-toml python3-wrapt python3-zombie-imp python3.11 python3.11-dev python3.11-minimal xtl-dev Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-get', '-y', 'install', 'xpore=2.1-2'] 3m17.4s INFO: Running scripts post_install 3m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_install_exceptions'] 3m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_install_exceptions'] 3m17.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb04q5riy'] 3m19.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb04q5riy'] 3m21.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', '-ac', '--ignore-obsolete'] 3m26.4s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', '-ac', '--ignore-obsolete'] 3m26.4s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 3m26.4s DUMP: 0.15.6 3m26.4s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 3m26.4s INFO: Running adequate version 0.15.6 now. 3m26.4s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'xpore'] 3m26.6s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'xpore'] 3m26.6s INFO: Running scripts pre_remove 3m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 3m26.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 3m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 3m26.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 3m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m31.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 3m31.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m32.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 3m32.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m32.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 3m32.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_remove_exceptions'] 3m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/pre_remove_exceptions'] 3m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m32.2s DUMP: install ok installed adduser adduser 3.137 install ok installed apt apt 2.9.8 install ok installed base-files base-files 13.5 install ok installed base-passwd base-passwd 3.6.4 install ok installed bash bash 5.2.32-1 install ok installed binutils binutils 2.43.1-2 install ok installed binutils-common:amd64 binutils-common 2.43.1-2 install ok installed binutils-x86-64-linux-gnu binutils-x86-64-linux-gnu 2.43.1-2 install ok installed bsdutils bsdutils 1:2.40.2-7 install ok installed ca-certificates ca-certificates 20240203 install ok installed coreutils coreutils 9.4-3.1 install ok installed cpp cpp 4:14.1.0-2 install ok installed cpp-12 cpp-12 12.4.0-2 install ok installed cpp-14 cpp-14 14.2.0-3 install ok installed cpp-14-x86-64-linux-gnu cpp-14-x86-64-linux-gnu 14.2.0-3 install ok installed cpp-x86-64-linux-gnu cpp-x86-64-linux-gnu 4:14.1.0-2 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.87 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.20 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.11 install ok installed e2fsprogs e2fsprogs 1.47.1-1 install ok installed findutils findutils 4.10.0-3 install ok installed g++ g++ 4:14.1.0-2 install ok installed g++-12 g++-12 12.4.0-2 install ok installed g++-14 g++-14 14.2.0-3 install ok installed g++-14-x86-64-linux-gnu g++-14-x86-64-linux-gnu 14.2.0-3 install ok installed g++-x86-64-linux-gnu g++-x86-64-linux-gnu 4:14.1.0-2 install ok installed gcc gcc 4:14.1.0-2 install ok installed gcc-12 gcc-12 12.4.0-2 install ok installed gcc-12-base:amd64 gcc-12-base 12.4.0-2 install ok installed gcc-14 gcc-14 14.2.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-3 install ok installed gcc-14-x86-64-linux-gnu gcc-14-x86-64-linux-gnu 14.2.0-3 install ok installed gcc-x86-64-linux-gnu gcc-x86-64-linux-gnu 4:14.1.0-2 install ok installed gpgv gpgv 2.2.43-8 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-2 install ok installed libaec0:amd64 libaec0 1.1.3-1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.8 install ok installed libasan8:amd64 libasan8 14.2.0-3 install ok installed libatomic1:amd64 libatomic1 14.2.0-3 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:4.0.1-1 install ok installed libaudit1:amd64 libaudit1 1:4.0.1-1 install ok installed libbinutils:amd64 libbinutils 2.43.1-2 install ok installed libblas3:amd64 libblas3 3.12.0-3 install ok installed libblkid1:amd64 libblkid1 2.40.2-7 install ok installed libboost-dev:amd64 libboost-dev 1.83.0.2+b2 install ok installed libboost1.83-dev:amd64 libboost1.83-dev 1.83.0-3.1 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b4 install ok installed libbsd0:amd64 libbsd0 0.12.2-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.39-7 install ok installed libc-dev-bin libc-dev-bin 2.39-7 install ok installed libc6:amd64 libc6 2.39-7 install ok installed libc6-dev:amd64 libc6-dev 2.39-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcc1-0:amd64 libcc1-0 14.2.0-3 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.36-5 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-5 install ok installed libctf-nobfd0:amd64 libctf-nobfd0 2.43.1-2 install ok installed libctf0:amd64 libctf0 2.43.1-2 install ok installed libcurl4t64:amd64 libcurl4t64 8.9.1-2 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.272 install ok installed libdouble-conversion3:amd64 libdouble-conversion3 3.3.0-1+b1 install ok installed libexpat1:amd64 libexpat1 2.6.2-1 install ok installed libexpat1-dev:amd64 libexpat1-dev 2.6.2-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libgcc-12-dev:amd64 libgcc-12-dev 12.4.0-2 install ok installed libgcc-14-dev:amd64 libgcc-14-dev 14.2.0-3 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.11.0-6 install ok installed libgfortran5:amd64 libgfortran5 14.2.0-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.6-2 install ok installed libgomp1:amd64 libgomp1 14.2.0-3 install ok installed libgpg-error0:amd64 libgpg-error0 1.50-3 install ok installed libgprofng0:amd64 libgprofng0 2.43.1-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.3-3 install ok installed libhdf5-103-1t64:amd64 libhdf5-103-1t64 1.10.10+repack-4 install ok installed libhdf5-hl-100t64:amd64 libhdf5-hl-100t64 1.10.10+repack-4 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1 install ok installed libhwasan0:amd64 libhwasan0 14.2.0-3 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libisl23:amd64 libisl23 0.26-3+b2 install ok installed libitm1:amd64 libitm1 14.2.0-3 install ok installed libjansson4:amd64 libjansson4 2.14-2+b2 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-sphinxdoc libjs-sphinxdoc 7.4.7-3 install ok installed libjs-underscore libjs-underscore 1.13.4~dfsg+~1.11.4-3 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.3-3 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.3-3 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.3-3 install ok installed liblapack3:amd64 liblapack3 3.12.0-3 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1+b1 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.18+dfsg-3 install ok installed liblsan0:amd64 liblsan0 14.2.0-3 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-3 install ok installed liblzf1:amd64 liblzf1 3.6-4+b1 install ok installed liblzma5:amd64 liblzma5 5.6.2-2 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40.2-7 install ok installed libmpc3:amd64 libmpc3 1.3.1-1+b2 install ok installed libmpfr6:amd64 libmpfr6 4.2.1-1+b1 install ok installed libncursesw6:amd64 libncursesw6 6.5-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.62.1-2 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-3+b2 install ok installed libnsl2:amd64 libnsl2 1.3.0-3+b2 install ok installed libopenblas-dev:amd64 libopenblas-dev 0.3.28+ds-2 install ok installed libopenblas-pthread-dev:amd64 libopenblas-pthread-dev 0.3.28+ds-2 install ok installed libopenblas0:amd64 libopenblas0 0.3.28+ds-2 install ok installed libopenblas0-pthread:amd64 libopenblas0-pthread 0.3.28+ds-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.5-2 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1 install ok installed libpython3-all-dev:amd64 libpython3-all-dev 3.12.5-1 install ok installed libpython3-dev:amd64 libpython3-dev 3.12.5-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.12.5-1 install ok installed libpython3.11-dev:amd64 libpython3.11-dev 3.11.9-1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.9-1 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.9-1 install ok installed libpython3.11t64:amd64 libpython3.11t64 3.11.9-1 install ok installed libpython3.12-dev:amd64 libpython3.12-dev 3.12.5-4 install ok installed libpython3.12-minimal:amd64 libpython3.12-minimal 3.12.5-4 install ok installed libpython3.12-stdlib:amd64 libpython3.12-stdlib 3.12.5-4 install ok installed libpython3.12t64:amd64 libpython3.12t64 3.12.5-4 install ok installed libquadmath0:amd64 libquadmath0 14.2.0-3 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-5 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b4 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-7 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-7 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1+b1 install ok installed libselinux1:amd64 libselinux1 3.7-1+b1 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b4 install ok installed libsepol2:amd64 libsepol2 3.7-1 install ok installed libsframe1:amd64 libsframe1 2.43.1-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.2-7 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-1 install ok installed libss2:amd64 libss2 1.47.1-1 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.0-7 install ok installed libssl3t64:amd64 libssl3t64 3.3.1-7 install ok installed libstdc++-12-dev:amd64 libstdc++-12-dev 12.4.0-2 install ok installed libstdc++-14-dev:amd64 libstdc++-14-dev 14.2.0-3 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-3 install ok installed libsystemd0:amd64 libsystemd0 256.5-1 install ok installed libsz2:amd64 libsz2 1.1.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtinfo6:amd64 libtinfo6 6.5-2 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1.3 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.4+ds-1.3 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.4+ds-1.3 install ok installed libtsan2:amd64 libtsan2 14.2.0-3 install ok installed libubsan1:amd64 libubsan1 14.2.0-3 install ok installed libudev1:amd64 libudev1 256.5-1 install ok installed libunistring2:amd64 libunistring2 1.0-2 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40.2-7 install ok installed libxsimd-dev:amd64 libxsimd-dev 13.0.0-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-1+b1 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1 install ok installed linux-libc-dev linux-libc-dev 6.10.6-1 install ok installed login login 1:4.16.0-2+really2.40.2-7 install ok installed login.defs login.defs 1:4.16.0-4 install ok installed logsave logsave 1.47.1-1 install ok installed mawk mawk 1.3.4.20240819-2 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.40.2-7 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2 install ok installed netbase netbase 6.4 install ok installed openssl openssl 3.3.1-7 install ok installed openssl-provider-legacy openssl-provider-legacy 3.3.1-7 install ok installed passwd passwd 1:4.16.0-4 install ok installed perl-base perl-base 5.38.2-5 install ok installed pyensembl pyensembl 2.3.13-1 install ok installed pylint pylint 3.2.6-1 install ok installed python3 python3 3.12.5-1 install ok installed python3-all python3-all 3.12.5-1 install ok installed python3-all-dev python3-all-dev 3.12.5-1 install ok installed python3-appdirs python3-appdirs 1.4.4-4 install ok installed python3-astroid python3-astroid 3.2.2-1 install ok installed python3-autocommand python3-autocommand 2.2.2-3 install ok installed python3-beniget python3-beniget 0.4.1-3 install ok installed python3-certifi python3-certifi 2024.6.2-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-1 install ok installed python3-charset-normalizer python3-charset-normalizer 3.3.2-2 install ok installed python3-datacache python3-datacache 1.2.1-2 install ok installed python3-dateutil python3-dateutil 2.9.0-2 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-dev python3-dev 3.12.5-1 install ok installed python3-dill python3-dill 0.3.8-1 install ok installed python3-gast python3-gast 0.5.2-2 install ok installed python3-gtfparse python3-gtfparse 1.3.0+ds-1 install ok installed python3-h5py python3-h5py 3.11.0-5 install ok installed python3-h5py-serial python3-h5py-serial 3.11.0-5 install ok installed python3-idna python3-idna 3.6-2.1 install ok installed python3-importlib-metadata python3-importlib-metadata 8.2.0-2 install ok installed python3-inflect python3-inflect 7.3.1-1 install ok installed python3-isort python3-isort 5.13.2-1 install ok installed python3-jaraco.context python3-jaraco.context 6.0.0-1 install ok installed python3-jaraco.functools python3-jaraco.functools 4.0.2-1 install ok installed python3-lazy-object-proxy python3-lazy-object-proxy 1.10.0-3+b1 install ok installed python3-lib2to3 python3-lib2to3 3.12.5-3 install ok installed python3-logilab-common python3-logilab-common 2.0.0-1 install ok installed python3-mccabe python3-mccabe 0.7.0-1 install ok installed python3-memoized-property python3-memoized-property 1.0.3-2 install ok installed python3-minimal python3-minimal 3.12.5-1 install ok installed python3-mock python3-mock 5.1.0-1 install ok installed python3-more-itertools python3-more-itertools 10.3.0-1 install ok installed python3-mypy-extensions python3-mypy-extensions 1.0.0-1 install ok installed python3-nose python3-nose 1.3.7-13 install ok installed python3-numpy python3-numpy 1:1.26.4+ds-11 install ok installed python3-pandas python3-pandas 2.2.2+dfsg-4 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.2.2+dfsg-4+b1 install ok installed python3-pbr python3-pbr 6.0.0-2 install ok installed python3-pkg-resources python3-pkg-resources 73.0.1-1 install ok installed python3-platformdirs python3-platformdirs 4.2.2-1 install ok installed python3-ply python3-ply 3.11-7 install ok installed python3-pythran python3-pythran 0.16.1+ds-3 install ok installed python3-requests python3-requests 2.32.3+dfsg-1 install ok installed python3-scipy python3-scipy 1.13.1-4 install ok installed python3-serializable python3-serializable 0.4.1+ds-1 install ok installed python3-setuptools python3-setuptools 73.0.1-1 install ok installed python3-simplejson python3-simplejson 3.19.3-1 install ok installed python3-six python3-six 1.16.0-7 install ok installed python3-toml python3-toml 0.10.2-1 install ok installed python3-tomlkit python3-tomlkit 0.13.2-1 install ok installed python3-typechecks python3-typechecks 0.1.0+ds-4 install ok installed python3-typeguard python3-typeguard 4.3.0-1 install ok installed python3-typing-extensions python3-typing-extensions 4.12.2-2 install ok installed python3-tz python3-tz 2024.1-2 install ok installed python3-ujson:amd64 python3-ujson 5.10.0-1+b1 install ok installed python3-urllib3 python3-urllib3 2.0.7-2 install ok installed python3-wrapt python3-wrapt 1.15.0-2+b2 install ok installed python3-yaml python3-yaml 6.0.2-1 install ok installed python3-zipp python3-zipp 3.20.0-1 install ok installed python3-zombie-imp python3-zombie-imp 0.0.2-2 install ok installed python3.11 python3.11 3.11.9-1 install ok installed python3.11-dev python3.11-dev 3.11.9-1 install ok installed python3.11-minimal python3.11-minimal 3.11.9-1 install ok installed python3.12 python3.12 3.12.5-4 install ok installed python3.12-dev python3.12-dev 3.12.5-4 install ok installed python3.12-minimal python3.12-minimal 3.12.5-4 install ok installed readline-common readline-common 8.2-5 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.10-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-4 install ok installed usr-is-merged usr-is-merged 39 install ok installed util-linux util-linux 2.40.2-7 install ok installed util-linux-extra util-linux-extra 2.40.2-7 install ok installed xpore xpore 2.1-2 install ok installed xtl-dev xtl-dev 0.7.5-3 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg+really1.3.1-1 3m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 3m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'ca-certificates', 'cpp', 'cpp-12', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'g++-', 'g++-12', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-12', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4t64:amd64', 'libdouble-conversion3:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1t64:amd64', 'libhdf5-hl-100t64:amd64', 'libhwasan0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libpsl5t64:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.11t64:amd64', 'libpython3.12-dev:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.12t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe1:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-14-dev:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libxsimd-dev:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'openssl', 'pyensembl', 'pylint', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-astroid', 'python3-autocommand', 'python3-beniget', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-datacache', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-dill', 'python3-gast', 'python3-gtfparse', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-importlib-metadata', 'python3-inflect', 'python3-isort', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-lazy-object-proxy', 'python3-lib2to3', 'python3-logilab-common', 'python3-mccabe', 'python3-memoized-property', 'python3-minimal', 'python3-mock', 'python3-more-itertools', 'python3-mypy-extensions', 'python3-nose', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pbr', 'python3-pkg-resources', 'python3-platformdirs', 'python3-ply', 'python3-pythran', 'python3-requests', 'python3-scipy', 'python3-serializable', 'python3-setuptools', 'python3-simplejson', 'python3-six', 'python3-toml', 'python3-tomlkit', 'python3-typechecks', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-ujson:amd64', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-zipp', 'python3-zombie-imp', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'python3.12', 'python3.12-dev', 'python3.12-minimal', 'readline-common', 'rpcsvc-proto', 'xtl-dev', 'zlib1g-dev:amd64', 'xpore'] 3m44.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: binutils binutils-common binutils-x86-64-linux-gnu ca-certificates cpp cpp-12 cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu g++ g++-12 g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-12 gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu libaec0 libasan8 libatomic1 libbinutils libblas3 libboost-dev libboost1.83-dev libbrotli1 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl4t64 libdouble-conversion3 libexpat1 libexpat1-dev libgcc-12-dev libgcc-14-dev libgfortran5 libgomp1 libgprofng0 libgssapi-krb5-2 libhdf5-103-1t64 libhdf5-hl-100t64 libhwasan0 libisl23 libitm1 libjansson4 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 libldap-2.5-0 liblsan0 liblzf1 libmpc3 libmpfr6 libncursesw6 libnghttp2-14 libnsl-dev libnsl2 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libpsl5t64 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.11t64 libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libquadmath0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsframe1 libsqlite3-0 libssh2-1t64 libstdc++-12-dev libstdc++-14-dev libsz2 libtirpc-common libtirpc-dev libtirpc3t64 libtsan2 libubsan1 libxsimd-dev libyaml-0-2 linux-libc-dev media-types netbase openssl pyensembl pylint python3 python3-all python3-all-dev python3-appdirs python3-astroid python3-autocommand python3-beniget python3-certifi python3-chardet python3-charset-normalizer python3-datacache python3-dateutil python3-decorator python3-dev python3-dill python3-gast python3-gtfparse python3-h5py python3-h5py-serial python3-idna python3-importlib-metadata python3-inflect python3-isort python3-jaraco.context python3-jaraco.functools python3-lazy-object-proxy python3-lib2to3 python3-logilab-common python3-mccabe python3-memoized-property python3-minimal python3-mock python3-more-itertools python3-mypy-extensions python3-nose python3-numpy python3-pandas python3-pandas-lib python3-pbr python3-pkg-resources python3-platformdirs python3-ply python3-pythran python3-requests python3-scipy python3-serializable python3-setuptools python3-simplejson python3-six python3-toml python3-tomlkit python3-typechecks python3-typeguard python3-typing-extensions python3-tz python3-ujson python3-urllib3 python3-wrapt python3-yaml python3-zipp python3-zombie-imp python3.11 python3.11-dev python3.11-minimal python3.12 python3.12-dev python3.12-minimal readline-common rpcsvc-proto xpore xtl-dev zlib1g-dev 0 upgraded, 0 newly installed, 179 to remove and 0 not upgraded. After this operation, 1058 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 39973 files and directories currently installed.) Removing python3-pythran (0.16.1+ds-3) ... Removing g++ (4:14.1.0-2) ... Removing gcc (4:14.1.0-2) ... Removing g++-12 (12.4.0-2) ... Removing gcc-12 (12.4.0-2) ... Removing g++-x86-64-linux-gnu (4:14.1.0-2) ... Removing gcc-x86-64-linux-gnu (4:14.1.0-2) ... Removing g++-14 (14.2.0-3) ... Removing g++-14-x86-64-linux-gnu (14.2.0-3) ... Removing xpore (2.1-2) ... Removing pyensembl (2.3.13-1) ... Removing python3-datacache (1.2.1-2) ... Removing python3-requests (2.32.3+dfsg-1) ... Removing python3-certifi (2024.6.2-1) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing cpp (4:14.1.0-2) ... Removing cpp-12 (12.4.0-2) ... Removing cpp-x86-64-linux-gnu (4:14.1.0-2) ... Removing python3-h5py (3.11.0-5) ... Removing python3-h5py-serial (3.11.0-5) ... Removing libhdf5-hl-100t64:amd64 (1.10.10+repack-4) ... Removing libhdf5-103-1t64:amd64 (1.10.10+repack-4) ... Removing libsz2:amd64 (1.1.3-1) ... Removing libaec0:amd64 (1.1.3-1) ... Removing libboost-dev:amd64 (1.83.0.2+b2) ... Removing libboost1.83-dev:amd64 (1.83.0-3.1) ... Removing libstdc++-14-dev:amd64 (14.2.0-3) ... Removing libstdc++-12-dev:amd64 (12.4.0-2) ... Removing libgcc-12-dev:amd64 (12.4.0-2) ... Removing python3-scipy (1.13.1-4) ... Removing python3-gtfparse (1.3.0+ds-1) ... Removing python3-pandas (2.2.2+dfsg-4) ... Removing python3-pandas-lib:amd64 (2.2.2+dfsg-4+b1) ... Removing python3-numpy (1:1.26.4+ds-11) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Removing liblapack3:amd64 (3.12.0-3) ... Removing libblas3:amd64 (3.12.0-3) ... Removing libcurl4t64:amd64 (8.9.1-2) ... Removing libbrotli1:amd64 (1.1.0-2+b4) ... Removing python3-all-dev (3.12.5-1) ... Removing python3-dev (3.12.5-1) ... Removing python3.12-dev (3.12.5-4) ... Removing libpython3-all-dev:amd64 (3.12.5-1) ... Removing libpython3-dev:amd64 (3.12.5-1) ... Removing libpython3.12-dev:amd64 (3.12.5-4) ... Removing python3.11-dev (3.11.9-1) ... Removing libpython3.11-dev:amd64 (3.11.9-1) ... Removing zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1) ... Removing libexpat1-dev:amd64 (2.6.2-1) ... Removing libc6-dev:amd64 (2.39-7) ... Removing libc-dev-bin (2.39-7) ... Removing libcrypt-dev:amd64 (1:4.4.36-5) ... Removing python3-ujson:amd64 (5.10.0-1+b1) ... Removing libdouble-conversion3:amd64 (3.3.0-1+b1) ... Removing python3-serializable (0.4.1+ds-1) ... Removing python3-simplejson (3.19.3-1) ... Removing python3-lib2to3 (3.12.5-3) ... Removing python3-pbr (6.0.0-2) ... Removing pylint (3.2.6-1) ... Removing python3-yaml (6.0.2-1) ... Removing python3-dateutil (2.9.0-2) ... Removing python3-six (1.16.0-7) ... Removing python3-nose (1.3.7-13) ... Removing python3-all (3.12.5-1) ... Removing libpython3.12t64:amd64 (3.12.5-4) ... Removing libopenblas-dev:amd64 (0.3.28+ds-2) ... Removing libopenblas-pthread-dev:amd64 (0.3.28+ds-2) ... Removing libopenblas0:amd64 (0.3.28+ds-2) ... Removing libopenblas0-pthread:amd64 (0.3.28+ds-2) ... Removing libgfortran5:amd64 (14.2.0-3) ... Removing libnsl-dev:amd64 (1.3.0-3+b2) ... Removing libtirpc-dev:amd64 (1.3.4+ds-1.3) ... Removing python3-logilab-common (2.0.0-1) ... Removing libjs-sphinxdoc (7.4.7-3) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Removing libldap-2.5-0:amd64 (2.5.18+dfsg-3) ... Removing liblzf1:amd64 (3.6-4+b1) ... Removing python3.11 (3.11.9-1) ... Removing libpython3.11t64:amd64 (3.11.9-1) ... Removing libpython3.11-stdlib:amd64 (3.11.9-1) ... Removing libnghttp2-14:amd64 (1.62.1-2) ... Removing libpsl5t64:amd64 (0.21.2-1.1) ... Removing python3.11-minimal (3.11.9-1) ... Removing libpython3.11-minimal:amd64 (3.11.9-1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-7) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-7) ... Removing libssh2-1t64:amd64 (1.11.0-7) ... Removing libxsimd-dev:amd64 (13.0.0-1) ... Removing libyaml-0-2:amd64 (0.2.5-1+b1) ... Removing linux-libc-dev (6.10.6-1) ... Removing openssl (3.3.1-7) ... Removing python3-appdirs (1.4.4-4) ... Removing python3-astroid (3.2.2-1) ... Removing python3-beniget (0.4.1-3) ... Removing python3-chardet (5.2.0+dfsg-1) ... Removing python3-charset-normalizer (3.3.2-2) ... Removing python3-decorator (5.1.1-5) ... Removing python3-dill (0.3.8-1) ... Removing python3-gast (0.5.2-2) ... Removing python3-idna (3.6-2.1) ... Removing python3-importlib-metadata (8.2.0-2) ... Removing python3-isort (5.13.2-1) ... Removing python3-lazy-object-proxy (1.10.0-3+b1) ... Removing python3-mccabe (0.7.0-1) ... Removing python3-memoized-property (1.0.3-2) ... Removing python3-mock (5.1.0-1) ... Removing python3-mypy-extensions (1.0.0-1) ... Removing python3-platformdirs (4.2.2-1) ... Removing python3-ply (3.11-7) ... Removing python3-toml (0.10.2-1) ... Removing python3-tomlkit (0.13.2-1) ... Removing python3-typechecks (0.1.0+ds-4) ... Removing python3-tz (2024.1-2) ... Removing python3-urllib3 (2.0.7-2) ... Removing python3-wrapt (1.15.0-2+b2) ... Removing python3-zombie-imp (0.0.2-2) ... Removing rpcsvc-proto (1.4.3-1) ... Removing xtl-dev (0.7.5-3) ... Removing gcc-14 (14.2.0-3) ... Removing binutils (2.43.1-2) ... Removing gcc-14-x86-64-linux-gnu (14.2.0-3) ... Removing binutils-x86-64-linux-gnu (2.43.1-2) ... Removing libgprofng0:amd64 (2.43.1-2) ... Removing libctf0:amd64 (2.43.1-2) ... Removing libbinutils:amd64 (2.43.1-2) ... Removing binutils-common:amd64 (2.43.1-2) ... Removing cpp-14 (14.2.0-3) ... Removing cpp-14-x86-64-linux-gnu (14.2.0-3) ... Removing libgcc-14-dev:amd64 (14.2.0-3) ... Removing libasan8:amd64 (14.2.0-3) ... Removing libatomic1:amd64 (14.2.0-3) ... Removing libcc1-0:amd64 (14.2.0-3) ... Removing libctf-nobfd0:amd64 (2.43.1-2) ... Removing python3-setuptools (73.0.1-1) ... Removing python3-pkg-resources (73.0.1-1) ... Removing libgomp1:amd64 (14.2.0-3) ... Removing libhwasan0:amd64 (14.2.0-3) ... Removing libisl23:amd64 (0.26-3+b2) ... Removing libitm1:amd64 (14.2.0-3) ... Removing libjansson4:amd64 (2.14-2+b2) ... Removing liblsan0:amd64 (14.2.0-3) ... Removing libmpc3:amd64 (1.3.1-1+b2) ... Removing libmpfr6:amd64 (4.2.1-1+b1) ... Removing libquadmath0:amd64 (14.2.0-3) ... Removing libsframe1:amd64 (2.43.1-2) ... Removing libtsan2:amd64 (14.2.0-3) ... Removing libubsan1:amd64 (14.2.0-3) ... Removing python3-autocommand (2.2.2-3) ... Removing python3-inflect (7.3.1-1) ... Removing python3-typeguard (4.3.0-1) ... Removing python3-jaraco.context (6.0.0-1) ... Removing python3-jaraco.functools (4.0.2-1) ... Removing python3-more-itertools (10.3.0-1) ... Removing python3-typing-extensions (4.12.2-2) ... Removing python3-zipp (3.20.0-1) ... Removing python3 (3.12.5-1) ... Removing python3.12 (3.12.5-4) ... Removing python3-minimal (3.12.5-1) ... Removing python3.12-minimal (3.12.5-4) ... Removing libexpat1:amd64 (2.6.2-1) ... Removing libpython3-stdlib:amd64 (3.12.5-1) ... Removing libpython3.12-stdlib:amd64 (3.12.5-4) ... find: '/usr/lib/python3': No such file or directory Removing libncursesw6:amd64 (6.5-2) ... Removing libnsl2:amd64 (1.3.0-3+b2) ... Removing libpython3.12-minimal:amd64 (3.12.5-4) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-5) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.46.1-1) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-5) ... Removing libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Removing 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Removing libgssapi-krb5-2:amd64 (1.21.3-3) ... Removing libkrb5-3:amd64 (1.21.3-3) ... Removing libk5crypto3:amd64 (1.21.3-3) ... Removing libkeyutils1:amd64 (1.6.3-3) ... Removing libkrb5support0:amd64 (1.21.3-3) ... Removing libtirpc-common (1.3.4+ds-1.3) ... Processing triggers for libc-bin (2.39-7) ... 3m44.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-get', 'remove', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'ca-certificates', 'cpp', 'cpp-12', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'g++-', 'g++-12', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-12', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4t64:amd64', 'libdouble-conversion3:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1t64:amd64', 'libhdf5-hl-100t64:amd64', 'libhwasan0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libpsl5t64:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.11t64:amd64', 'libpython3.12-dev:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.12t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe1:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-14-dev:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libxsimd-dev:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'openssl', 'pyensembl', 'pylint', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-astroid', 'python3-autocommand', 'python3-beniget', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-datacache', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-dill', 'python3-gast', 'python3-gtfparse', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-importlib-metadata', 'python3-inflect', 'python3-isort', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-lazy-object-proxy', 'python3-lib2to3', 'python3-logilab-common', 'python3-mccabe', 'python3-memoized-property', 'python3-minimal', 'python3-mock', 'python3-more-itertools', 'python3-mypy-extensions', 'python3-nose', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pbr', 'python3-pkg-resources', 'python3-platformdirs', 'python3-ply', 'python3-pythran', 'python3-requests', 'python3-scipy', 'python3-serializable', 'python3-setuptools', 'python3-simplejson', 'python3-six', 'python3-toml', 'python3-tomlkit', 'python3-typechecks', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-ujson:amd64', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-zipp', 'python3-zombie-imp', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'python3.12', 'python3.12-dev', 'python3.12-minimal', 'readline-common', 'rpcsvc-proto', 'xtl-dev', 'zlib1g-dev:amd64', 'xpore'] 3m44.3s INFO: Running scripts post_remove 3m44.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_remove_exceptions'] 3m44.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_remove_exceptions'] 3m44.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'ca-certificates', 'cpp', 'cpp-12', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'g++', 'g++-12', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-12', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4t64:amd64', 'libdouble-conversion3:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1t64:amd64', 'libhdf5-hl-100t64:amd64', 'libhwasan0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libpsl5t64:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.11t64:amd64', 'libpython3.12-dev:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.12t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe1:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-14-dev:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libxsimd-dev:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'openssl', 'pyensembl', 'pylint', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-astroid', 'python3-autocommand', 'python3-beniget', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-datacache', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-dill', 'python3-gast', 'python3-gtfparse', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-importlib-metadata', 'python3-inflect', 'python3-isort', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-lazy-object-proxy', 'python3-lib2to3', 'python3-logilab-common', 'python3-mccabe', 'python3-memoized-property', 'python3-minimal', 'python3-mock', 'python3-more-itertools', 'python3-mypy-extensions', 'python3-nose', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pbr', 'python3-pkg-resources', 'python3-platformdirs', 'python3-ply', 'python3-pythran', 'python3-requests', 'python3-scipy', 'python3-serializable', 'python3-setuptools', 'python3-simplejson', 'python3-six', 'python3-toml', 'python3-tomlkit', 'python3-typechecks', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-ujson:amd64', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-zipp', 'python3-zombie-imp', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'python3.12', 'python3.12-dev', 'python3.12-minimal', 'readline-common', 'rpcsvc-proto', 'xtl-dev', 'zlib1g-dev:amd64'] 3m44.6s DUMP: dpkg: warning: ignoring request to remove binutils which isn't installed (Reading database ... 5294 files and directories currently installed.) Purging configuration files for binutils-common:amd64 (2.43.1-2) ... dpkg: warning: ignoring request to remove binutils-x86-64-linux-gnu which isn't installed Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for cpp (4:14.1.0-2) ... dpkg: warning: ignoring request to remove cpp-12 which isn't installed dpkg: warning: ignoring request to remove cpp-14 which isn't installed dpkg: warning: ignoring request to remove cpp-14-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove cpp-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove g++-12 which isn't installed dpkg: warning: ignoring request to remove g++-14 which isn't installed dpkg: warning: ignoring request to remove g++-14-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove g++-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove gcc-12 which isn't installed dpkg: warning: ignoring request to remove gcc-14 which isn't installed dpkg: warning: ignoring request to remove gcc-14-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove gcc-x86-64-linux-gnu which isn't installed dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libbinutils which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libboost-dev which isn't installed dpkg: warning: ignoring request to remove libboost1.83-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcc1-0 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.36-5) ... dpkg: warning: ignoring request to remove libctf-nobfd0 which isn't installed dpkg: warning: ignoring request to remove libctf0 which isn't installed dpkg: warning: ignoring request to remove libcurl4t64 which isn't installed dpkg: warning: ignoring request to remove libdouble-conversion3 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libexpat1-dev which isn't installed dpkg: warning: ignoring request to remove libgcc-12-dev which isn't installed dpkg: warning: ignoring request to remove libgcc-14-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgprofng0 which isn't installed Purging configuration files for libgssapi-krb5-2:amd64 (1.21.3-3) ... dpkg: warning: ignoring request to remove libhdf5-103-1t64 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-100t64 which isn't installed dpkg: warning: ignoring request to remove libhwasan0 which isn't installed dpkg: warning: ignoring request to remove libisl23 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjansson4 which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-sphinxdoc which isn't installed dpkg: warning: ignoring request to remove libjs-underscore which isn't installed dpkg: warning: ignoring request to remove libk5crypto3 which isn't installed dpkg: warning: ignoring request to remove libkeyutils1 which isn't installed dpkg: warning: ignoring request to remove libkrb5-3 which isn't installed dpkg: warning: ignoring request to remove libkrb5support0 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove liblzf1 which isn't installed dpkg: warning: ignoring request to remove libmpc3 which isn't installed dpkg: warning: ignoring request to remove libmpfr6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnsl-dev which isn't installed dpkg: warning: ignoring request to remove libnsl2 which isn't installed dpkg: warning: ignoring request to remove libopenblas-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas-pthread-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas0 which isn't installed dpkg: warning: ignoring request to remove libopenblas0-pthread which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-all-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-dev which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11-dev which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.9-1) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11t64 which isn't installed dpkg: warning: ignoring request to remove libpython3.12-dev which isn't installed Purging configuration files for libpython3.12-minimal:amd64 (3.12.5-4) ... dpkg: warning: ignoring request to remove libpython3.12-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.12t64 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-5) ... dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsframe1 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed dpkg: warning: ignoring request to remove libstdc++-12-dev which isn't installed dpkg: warning: ignoring request to remove libstdc++-14-dev which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed Purging configuration files for libtirpc-common (1.3.4+ds-1.3) ... dpkg: warning: ignoring request to remove libtirpc-dev which isn't installed Purging configuration files for libtirpc3t64:amd64 (1.3.4+ds-1.3) ... dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libxsimd-dev which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed Purging configuration files for media-types (10.1.0) ... Purging configuration files for netbase (6.4) ... Purging configuration files for openssl (3.3.1-7) ... dpkg: warning: ignoring request to remove pyensembl which isn't installed Purging configuration files for pylint (3.2.6-1) ... Purging configuration files for python3 (3.12.5-1) ... dpkg: warning: ignoring request to remove python3-all which isn't installed dpkg: warning: ignoring request to remove python3-all-dev which isn't installed dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-astroid which isn't installed dpkg: warning: ignoring request to remove python3-autocommand which isn't installed dpkg: warning: ignoring request to remove python3-beniget which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-datacache which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-dev which isn't installed dpkg: warning: ignoring request to remove python3-dill which isn't installed dpkg: warning: ignoring request to remove python3-gast which isn't installed dpkg: warning: ignoring request to remove python3-gtfparse which isn't installed dpkg: warning: ignoring request to remove python3-h5py which isn't installed dpkg: warning: ignoring request to remove python3-h5py-serial which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-importlib-metadata which isn't installed dpkg: warning: ignoring request to remove python3-inflect which isn't installed dpkg: warning: ignoring request to remove python3-isort which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.context which isn't installed dpkg: warning: ignoring request to remove python3-jaraco.functools which isn't installed dpkg: warning: ignoring request to remove python3-lazy-object-proxy which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-logilab-common which isn't installed dpkg: warning: ignoring request to remove python3-mccabe which isn't installed dpkg: warning: ignoring request to remove python3-memoized-property which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-mock which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-mypy-extensions which isn't installed dpkg: warning: ignoring request to remove python3-nose which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed Purging configuration files for python3-pbr (6.0.0-2) ... dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-platformdirs which isn't installed dpkg: warning: ignoring request to remove python3-ply which isn't installed dpkg: warning: ignoring request to remove python3-pythran which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-serializable which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-simplejson which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-toml which isn't installed dpkg: warning: ignoring request to remove python3-tomlkit which isn't installed dpkg: warning: ignoring request to remove python3-typechecks which isn't installed dpkg: warning: ignoring request to remove python3-typeguard which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-ujson which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-wrapt which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3-zipp which isn't installed dpkg: warning: ignoring request to remove python3-zombie-imp which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed dpkg: warning: ignoring request to remove python3.11-dev which isn't installed Purging configuration files for python3.11-minimal (3.11.9-1) ... dpkg: warning: ignoring request to remove python3.12 which isn't installed dpkg: warning: ignoring request to remove python3.12-dev which isn't installed Purging configuration files for python3.12-minimal (3.12.5-4) ... Purging configuration files for readline-common (8.2-5) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove xtl-dev which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 3m44.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'dpkg', '--purge', 'binutils', 'binutils-common:amd64', 'binutils-x86-64-linux-gnu', 'ca-certificates', 'cpp', 'cpp-12', 'cpp-14', 'cpp-14-x86-64-linux-gnu', 'cpp-x86-64-linux-gnu', 'g++', 'g++-12', 'g++-14', 'g++-14-x86-64-linux-gnu', 'g++-x86-64-linux-gnu', 'gcc', 'gcc-12', 'gcc-14', 'gcc-14-x86-64-linux-gnu', 'gcc-x86-64-linux-gnu', 'libaec0:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libbinutils:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcc1-0:amd64', 'libcrypt-dev:amd64', 'libctf-nobfd0:amd64', 'libctf0:amd64', 'libcurl4t64:amd64', 'libdouble-conversion3:amd64', 'libexpat1:amd64', 'libexpat1-dev:amd64', 'libgcc-12-dev:amd64', 'libgcc-14-dev:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libgprofng0:amd64', 'libgssapi-krb5-2:amd64', 'libhdf5-103-1t64:amd64', 'libhdf5-hl-100t64:amd64', 'libhwasan0:amd64', 'libisl23:amd64', 'libitm1:amd64', 'libjansson4:amd64', 'libjs-jquery', 'libjs-sphinxdoc', 'libjs-underscore', 'libk5crypto3:amd64', 'libkeyutils1:amd64', 'libkrb5-3:amd64', 'libkrb5support0:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.5-0:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmpc3:amd64', 'libmpfr6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnsl-dev:amd64', 'libnsl2:amd64', 'libopenblas-dev:amd64', 'libopenblas-pthread-dev:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libpsl5t64:amd64', 'libpython3-all-dev:amd64', 'libpython3-dev:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-dev:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.11t64:amd64', 'libpython3.12-dev:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.12t64:amd64', 'libquadmath0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsframe1:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libstdc++-12-dev:amd64', 'libstdc++-14-dev:amd64', 'libsz2:amd64', 'libtirpc-common', 'libtirpc-dev:amd64', 'libtirpc3t64:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libxsimd-dev:amd64', 'libyaml-0-2:amd64', 'linux-libc-dev', 'media-types', 'netbase', 'openssl', 'pyensembl', 'pylint', 'python3', 'python3-all', 'python3-all-dev', 'python3-appdirs', 'python3-astroid', 'python3-autocommand', 'python3-beniget', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-datacache', 'python3-dateutil', 'python3-decorator', 'python3-dev', 'python3-dill', 'python3-gast', 'python3-gtfparse', 'python3-h5py', 'python3-h5py-serial', 'python3-idna', 'python3-importlib-metadata', 'python3-inflect', 'python3-isort', 'python3-jaraco.context', 'python3-jaraco.functools', 'python3-lazy-object-proxy', 'python3-lib2to3', 'python3-logilab-common', 'python3-mccabe', 'python3-memoized-property', 'python3-minimal', 'python3-mock', 'python3-more-itertools', 'python3-mypy-extensions', 'python3-nose', 'python3-numpy', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pbr', 'python3-pkg-resources', 'python3-platformdirs', 'python3-ply', 'python3-pythran', 'python3-requests', 'python3-scipy', 'python3-serializable', 'python3-setuptools', 'python3-simplejson', 'python3-six', 'python3-toml', 'python3-tomlkit', 'python3-typechecks', 'python3-typeguard', 'python3-typing-extensions', 'python3-tz', 'python3-ujson:amd64', 'python3-urllib3', 'python3-wrapt', 'python3-yaml', 'python3-zipp', 'python3-zombie-imp', 'python3.11', 'python3.11-dev', 'python3.11-minimal', 'python3.12', 'python3.12-dev', 'python3.12-minimal', 'readline-common', 'rpcsvc-proto', 'xtl-dev', 'zlib1g-dev:amd64'] 3m44.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'dpkg', '--purge', 'xpore'] 3m44.6s DUMP: dpkg: warning: ignoring request to remove xpore which isn't installed 3m44.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'dpkg', '--purge', 'xpore'] 3m44.6s INFO: Running scripts post_purge 3m44.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_purge_exceptions'] 3m44.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_purge_exceptions'] 3m44.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'dpkg', '--purge', '--pending'] 3m44.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'dpkg', '--purge', '--pending'] 3m44.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'dpkg', '--remove', '--pending'] 3m44.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'dpkg', '--remove', '--pending'] 3m44.6s INFO: Running scripts post_test 3m44.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_test_exceptions'] 3m44.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'tmp/scripts/post_test_exceptions'] 3m44.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb04q5riy'] 3m45.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpb04q5riy'] 3m45.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'dpkg-divert', '--list'] 3m45.0s DUMP: diversion of /sbin/mkfs.bfs to /sbin/mkfs.bfs.usr-is-merged by util-linux-extra diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /sbin/mkfs.minix to /sbin/mkfs.minix.usr-is-merged by util-linux-extra diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 diversion of /sbin/mkfs.cramfs to /sbin/mkfs.cramfs.usr-is-merged by util-linux-extra local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /sbin/ctrlaltdel to /sbin/ctrlaltdel.usr-is-merged by util-linux-extra diversion of /sbin/fsck.minix to /sbin/fsck.minix.usr-is-merged by util-linux-extra diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files diversion of /sbin/fsck.cramfs to /sbin/fsck.cramfs.usr-is-merged by util-linux-extra 3m45.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'dpkg-divert', '--list'] 3m45.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-get', 'clean'] 3m45.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpb04q5riy', 'apt-get', 'clean'] 3m45.1s DEBUG: Recording chroot state 3m46.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpb04q5riy/dev/shm'] 3m46.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpb04q5riy/dev/shm'] 3m46.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpb04q5riy/dev/console'] 3m46.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpb04q5riy/dev/console'] 3m46.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpb04q5riy/dev/ptmx'] 3m46.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpb04q5riy/dev/ptmx'] 3m46.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpb04q5riy/dev/pts'] 3m46.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpb04q5riy/dev/pts'] 3m46.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpb04q5riy/proc'] 3m46.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpb04q5riy/proc'] 3m46.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpb04q5riy'] 3m46.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpb04q5riy'] 3m46.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpb04q5riy 3m46.3s INFO: PASS: Upgrading between Debian distributions. 3m46.3s INFO: PASS: All tests. 3m46.3s INFO: piuparts run ends. ret=0 End: 2024-08-23 18:26:30 GMT