Start: 2024-04-24 16:52:42 GMT [stable] Package: augur Version: 11.0.0-1 Installed-Size: 606 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-bcbio-gff, python3-biopython, python3-jsonschema, python3-packaging, python3-pandas (>= 0.16.2), python3-treetime, python3:any, python3-boto (>= 2.38.0), python3-cvxopt, python3-dendropy, python3-matplotlib (>= 1.5.1), python3-schedule, python3-seaborn (>= 0.6.0), seqmagick, python3-ipdb, mafft, iqtree, raxml, fasttree, vcftools Description: pipeline components for real-time virus analysis Homepage: https://github.com/nextstrain/augur Description-md5: e2aaa44840d7b632d0e95700bc100196 Section: science Priority: optional Filename: pool/main/a/augur/augur_11.0.0-1_all.deb Size: 141520 MD5sum: 8fede713415e032ce6fffd2be55cb14f SHA256: 5eea8dac9e9f79cfec53edd22d542edef7f88f657c6a6d853ebb09c4216db7a2 [sid] Package: augur Version: 24.3.0-1 Installed-Size: 930 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-bcbio-gff, python3-biopython, python3-cvxopt, python3-importlib-resources | python3-supported-min (>= 3.11), python3-isodate, python3-jsonschema, python3-networkx, python3-numpy, python3-packaging, python3-pandas, python3-pyfastx, python3-scipy, python3-treetime (>= 0.9.4), python3-xopen (>= 1.7.0-1~), python3:any, python3-boto3, python3-dendropy, python3-matplotlib, python3-schedule, python3-seaborn, python3-zstandard, seqmagick, python3-ipdb, mafft, raxml, fasttree, vcftools Recommends: iqtree Description: pipeline components for real-time virus analysis Homepage: https://github.com/nextstrain/augur Description-md5: e2aaa44840d7b632d0e95700bc100196 Section: science Priority: optional Filename: pool/main/a/augur/augur_24.3.0-1_all.deb Size: 216432 MD5sum: b855b027e8c746cced69cbae40f0d18d SHA256: 093c5ffa521244b966b09d0cdb2db1418fc04ce68890fa9582082d3cfdad7c64 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d stable -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat --apt augur=24.3.0-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.1~202403190841~1.4-4-g85045c69 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d stable -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat --apt augur=24.3.0-1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpw78y0qkg 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpw78y0qkg 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/2', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpw78y0qkg/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-get', 'update'] 0m1.3s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Reading package lists... 0m1.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-get', 'update'] 0m1.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-get', '-yf', 'dist-upgrade'] 0m1.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-get', '-yf', 'dist-upgrade'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.1s DUMP: 29fcf27583012b383113cec2bf757015 - 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.1s INFO: Running scripts post_setup 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_setup_dummy_users'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_setup_dummy_users'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_setup_forbid_home'] 0m3.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_setup_forbid_home'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_setup_minimize'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_setup_minimize'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_setup_zz_backports'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_setup_zz_backports'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.1s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u9 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u8 install ok installed libc6:amd64 libc6 2.31-13+deb11u8 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.1s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat 0m3.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg'] 0m3.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg'] 0m3.7s INFO: Running scripts is_testable 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/is_testable_uninstallable'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/is_testable_uninstallable'] 0m3.7s INFO: Running scripts pre_test 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_test_exceptions'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_test_exceptions'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_test_root_password'] 0m3.7s DUMP: New password: Retype new password: passwd: password updated successfully 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_test_root_password'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-cache', 'show', '--no-all-versions', 'augur'] 0m4.0s DUMP: Package: augur Version: 11.0.0-1 Installed-Size: 606 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-bcbio-gff, python3-biopython, python3-jsonschema, python3-packaging, python3-pandas (>= 0.16.2), python3-treetime, python3:any, python3-boto (>= 2.38.0), python3-cvxopt, python3-dendropy, python3-matplotlib (>= 1.5.1), python3-schedule, python3-seaborn (>= 0.6.0), seqmagick, python3-ipdb, mafft, iqtree, raxml, fasttree, vcftools Description-en: pipeline components for real-time virus analysis The nextstrain project is an attempt to make flexible informatic pipelines and visualization tools to track ongoing pathogen evolution as sequence data emerges. The nextstrain project derives from nextflu, which was specific to influenza evolution. . nextstrain is comprised of three components: . * fauna: database and IO scripts for sequence and serological data * augur: informatic pipelines to conduct inferences from raw data * auspice: web app to visualize resulting inferences Description-md5: e2aaa44840d7b632d0e95700bc100196 Homepage: https://github.com/nextstrain/augur Section: science Priority: optional Filename: pool/main/a/augur/augur_11.0.0-1_all.deb Size: 141520 MD5sum: 8fede713415e032ce6fffd2be55cb14f SHA256: 5eea8dac9e9f79cfec53edd22d542edef7f88f657c6a6d853ebb09c4216db7a2 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-cache', 'show', '--no-all-versions', 'augur'] 0m4.0s INFO: apt-cache knows about the following packages: augur 0m4.0s INFO: Running scripts pre_install 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_database-server'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_database-server'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_exceptions'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_exceptions'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_extras'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_extras'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-cache', 'policy'] 0m4.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.9,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-cache', 'policy'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-cache', 'policy', 'augur'] 0m4.1s DUMP: augur: Installed: (none) Candidate: 11.0.0-1 Version table: 11.0.0-1 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-cache', 'policy', 'augur'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-get', '-y', 'install', 'augur'] 0m51.0s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: blt ca-certificates fasttree fontconfig-config fonts-lyx ibverbs-providers ipython3 iqtree libamd2 libblas3 libbrotli1 libbsd0 libcamd2 libccolamd2 libcholmod3 libcolamd2 libdeflate0 libdsdp-5.8gf libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfabric1 libfftw3-double3 libfontconfig1 libfreetype6 libgdbm-compat4 libgdbm6 libgfortran5 libglpk40 libgomp1 libgsl25 libgslcblas0 libhwloc-plugins libhwloc15 libibverbs1 libicu67 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 libltdl7 libmd0 libmetis5 libmpdec3 libncursesw6 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libperl5.32 libpmix2 libpng16-16 libpsm-infinipath1 libpsm2-2 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 librdmacm1 libreadline8 libsqlite3-0 libsuitesparseconfig5 libtcl8.6 libtiff5 libtk8.6 libucx0 libumfpack5 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxnvctrl0 libxrender1 libxss1 mafft mailcap media-types mime-support ocl-icd-libopencl1 openssl perl perl-modules-5.32 python-matplotlib-data python3 python3-attr python3-backcall python3-bcbio-gff python3-biopython python3-boto python3-certifi python3-chardet python3-cvxopt python3-cycler python3-dateutil python3-decorator python3-dendropy python3-distutils python3-idna python3-importlib-metadata python3-ipdb python3-ipython python3-ipython-genutils python3-jedi python3-jsonschema python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal python3-more-itertools python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pickleshare python3-pil python3-pkg-resources python3-prompt-toolkit python3-ptyprocess python3-pygments python3-pygtrie python3-pyparsing python3-pyrsistent python3-reportlab python3-reportlab-accel python3-requests python3-schedule python3-scipy python3-seaborn python3-setuptools python3-six python3-tk python3-traitlets python3-treetime python3-tz python3-urllib3 python3-wcwidth python3-zipp python3.9 python3.9-minimal raxml readline-common sensible-utils seqmagick tk8.6-blt2.5 ttf-bitstream-vera ucf vcftools x11-common Suggested packages: blt-demo libfftw3-bin libfftw3-dev gdbm-l10n libiodbc2-dev default-libmysqlclient-dev gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libhwloc-contrib-plugins libjs-jquery-ui-docs liblcms2-utils pciutils tcl8.6 tk8.6 opencl-icd perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-venv python-attr-doc bwa clustalo clustalw dialign dssp emboss muscle phylip phyml prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-renderpm python3-psycopg2 samtools t-coffee wise w3-dtd-mathml python-cvxopt-doc python-cycler-doc python-ipython-doc python-jsonschema-doc dvipng ffmpeg ghostscript gir1.2-gtk-3.0 inkscape librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-nose python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft gcc gfortran python-numpy-doc python3-dev python3-numpy-dbg python3-pytest python-pandas-doc python3-statsmodels python-pexpect-doc python-pil-doc python3-pil-dbg python-pygments-doc python-pygtrie-doc python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-setuptools-doc tix python3-tk-dbg python3.9-venv python3.9-doc binutils binfmt-support readline-doc Recommended packages: javascript-common libgpm2 blast2 libwww-perl lynx ruby bzip2 file xz-utils netbase python-biopython-doc ncbi-blast+ python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-xlwt python3-bs4 python3-html5lib python3-lxml python3-tables python3-jinja2 python3-numba python3-olefile python3-renderpm g++ | c++-compiler python3-patsy tabix The following NEW packages will be installed: augur blt ca-certificates fasttree fontconfig-config fonts-lyx ibverbs-providers ipython3 iqtree libamd2 libblas3 libbrotli1 libbsd0 libcamd2 libccolamd2 libcholmod3 libcolamd2 libdeflate0 libdsdp-5.8gf libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfabric1 libfftw3-double3 libfontconfig1 libfreetype6 libgdbm-compat4 libgdbm6 libgfortran5 libglpk40 libgomp1 libgsl25 libgslcblas0 libhwloc-plugins libhwloc15 libibverbs1 libicu67 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 libltdl7 libmd0 libmetis5 libmpdec3 libncursesw6 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libperl5.32 libpmix2 libpng16-16 libpsm-infinipath1 libpsm2-2 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 librdmacm1 libreadline8 libsqlite3-0 libsuitesparseconfig5 libtcl8.6 libtiff5 libtk8.6 libucx0 libumfpack5 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxnvctrl0 libxrender1 libxss1 mafft mailcap media-types mime-support ocl-icd-libopencl1 openssl perl perl-modules-5.32 python-matplotlib-data python3 python3-attr python3-backcall python3-bcbio-gff python3-biopython python3-boto python3-certifi python3-chardet python3-cvxopt python3-cycler python3-dateutil python3-decorator python3-dendropy python3-distutils python3-idna python3-importlib-metadata python3-ipdb python3-ipython python3-ipython-genutils python3-jedi python3-jsonschema python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal python3-more-itertools python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pickleshare python3-pil python3-pkg-resources python3-prompt-toolkit python3-ptyprocess python3-pygments python3-pygtrie python3-pyparsing python3-pyrsistent python3-reportlab python3-reportlab-accel python3-requests python3-schedule python3-scipy python3-seaborn python3-setuptools python3-six python3-tk python3-traitlets python3-treetime python3-tz python3-urllib3 python3-wcwidth python3-zipp python3.9 python3.9-minimal raxml readline-common sensible-utils seqmagick tk8.6-blt2.5 ttf-bitstream-vera ucf vcftools x11-common 0 upgraded, 163 newly installed, 0 to remove and 0 not upgraded. Need to get 87.9 MB of archives. After this operation, 378 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 perl-modules-5.32 all 5.32.1-4+deb11u3 [2823 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.19-2 [64.9 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.19-2 [44.7 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libperl5.32 amd64 5.32.1-4+deb11u3 [4121 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 perl amd64 5.32.1-4+deb11u3 [293 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 mailcap all 3.69 [31.7 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 mime-support all 3.66 [10.9 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.2+20201114-2+deb11u2 [132 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1w-0+deb11u1 [859 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get:25 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3+deb11u1 [153 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 libquadmath0 amd64 10.2.1-6 [145 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3+deb11u1 [2166 kB] Get:32 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get:33 http://deb.debian.org/debian bullseye/main amd64 python3-reportlab-accel amd64 3.5.59-2 [39.1 kB] Get:34 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:35 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:36 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1+deb11u1 [418 kB] Get:37 http://deb.debian.org/debian bullseye/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get:38 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get:39 http://deb.debian.org/debian bullseye/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get:40 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get:41 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:42 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1+deb11u2 [259 kB] Get:43 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1+deb11u5 [290 kB] Get:44 http://deb.debian.org/debian bullseye/main amd64 libwebpdemux2 amd64 0.6.1-2.1+deb11u2 [87.8 kB] Get:45 http://deb.debian.org/debian bullseye/main amd64 libwebpmux3 amd64 0.6.1-2.1+deb11u2 [97.7 kB] Get:46 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:47 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get:48 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1+deb11u1 [108 kB] Get:49 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:50 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:51 http://deb.debian.org/debian bullseye/main amd64 python3-pil amd64 8.1.2+dfsg-0.3+deb11u1 [445 kB] Get:52 http://deb.debian.org/debian bullseye/main amd64 python3-reportlab all 3.5.59-2 [575 kB] Get:53 http://deb.debian.org/debian bullseye/main amd64 python3-biopython amd64 1.78+dfsg-4 [1402 kB] Get:54 http://deb.debian.org/debian bullseye/main amd64 python3-bcbio-gff all 0.6.6-3 [15.2 kB] Get:55 http://deb.debian.org/debian bullseye/main amd64 python3-attr all 20.3.0-1 [52.9 kB] Get:56 http://deb.debian.org/debian bullseye/main amd64 python3-more-itertools all 4.2.0-3 [42.7 kB] Get:57 http://deb.debian.org/debian bullseye/main amd64 python3-zipp all 1.0.0-3 [6060 B] Get:58 http://deb.debian.org/debian bullseye/main amd64 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get:59 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get:60 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get:61 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Get:62 http://deb.debian.org/debian bullseye/main amd64 python3-pyrsistent amd64 0.15.5-1+b3 [59.1 kB] Get:63 http://deb.debian.org/debian bullseye/main amd64 python3-jsonschema 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http://deb.debian.org/debian bullseye/main amd64 python3-certifi all 2020.6.20-1 [151 kB] Get:75 http://deb.debian.org/debian bullseye/main amd64 python3-chardet all 4.0.0-1 [99.0 kB] Get:76 http://deb.debian.org/debian bullseye/main amd64 python3-idna all 2.10-1 [37.4 kB] Get:77 http://deb.debian.org/debian bullseye/main amd64 python3-urllib3 all 1.26.5-1~exp1 [114 kB] Get:78 http://deb.debian.org/debian bullseye/main amd64 python3-requests all 2.25.1+dfsg-2 [69.3 kB] Get:79 http://deb.debian.org/debian bullseye/main amd64 python3-boto all 2.49.0-3 [735 kB] Get:80 http://deb.debian.org/debian bullseye/main amd64 libsuitesparseconfig5 amd64 1:5.8.1+dfsg-2 [23.0 kB] Get:81 http://deb.debian.org/debian bullseye/main amd64 libamd2 amd64 1:5.8.1+dfsg-2 [35.5 kB] Get:82 http://deb.debian.org/debian bullseye/main amd64 libcamd2 amd64 1:5.8.1+dfsg-2 [36.9 kB] Get:83 http://deb.debian.org/debian bullseye/main amd64 libccolamd2 amd64 1:5.8.1+dfsg-2 [38.8 kB] Get:84 http://deb.debian.org/debian bullseye/main amd64 libcolamd2 amd64 1:5.8.1+dfsg-2 [32.1 kB] Get:85 http://deb.debian.org/debian bullseye/main amd64 libgomp1 amd64 10.2.1-6 [99.9 kB] Get:86 http://deb.debian.org/debian bullseye/main amd64 libmetis5 amd64 5.1.0.dfsg-7 [171 kB] Get:87 http://deb.debian.org/debian bullseye/main amd64 libcholmod3 amd64 1:5.8.1+dfsg-2 [339 kB] Get:88 http://deb.debian.org/debian bullseye/main amd64 libdsdp-5.8gf amd64 5.8-9.4 [189 kB] Get:89 http://deb.debian.org/debian bullseye/main amd64 libfftw3-double3 amd64 3.3.8-2 [733 kB] Get:90 http://deb.debian.org/debian bullseye/main amd64 libltdl7 amd64 2.4.6-15 [391 kB] Get:91 http://deb.debian.org/debian bullseye/main amd64 libglpk40 amd64 5.0-1 [400 kB] Get:92 http://deb.debian.org/debian bullseye/main amd64 libgslcblas0 amd64 2.6+dfsg-2 [102 kB] Get:93 http://deb.debian.org/debian bullseye/main amd64 libgsl25 amd64 2.6+dfsg-2 [934 kB] Get:94 http://deb.debian.org/debian bullseye/main amd64 libumfpack5 amd64 1:5.8.1+dfsg-2 [246 kB] Get:95 http://deb.debian.org/debian bullseye/main amd64 python3-cvxopt amd64 1.2.5+dfsg-3+b1 [262 kB] Get:96 http://deb.debian.org/debian bullseye/main amd64 python3-dendropy all 4.5.1-1 [273 kB] Get:97 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get:98 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-ui all 1.12.1+dfsg-8+deb11u2 [232 kB] Get:99 http://deb.debian.org/debian bullseye/main amd64 fonts-lyx all 2.3.6-1 [205 kB] Get:100 http://deb.debian.org/debian bullseye/main amd64 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get:101 http://deb.debian.org/debian bullseye/main amd64 python-matplotlib-data all 3.3.4-1 [4153 kB] Get:102 http://deb.debian.org/debian bullseye/main amd64 python3-cycler all 0.10.0-3 [8084 B] Get:103 http://deb.debian.org/debian bullseye/main amd64 python3-kiwisolver amd64 1.3.1-1+b1 [55.7 kB] Get:104 http://deb.debian.org/debian bullseye/main amd64 python3-matplotlib amd64 3.3.4-1 [4163 kB] Get:105 http://deb.debian.org/debian bullseye/main amd64 python3-schedule all 0.6.0-1 [10.7 kB] Get:106 http://deb.debian.org/debian bullseye/main amd64 libtcl8.6 amd64 8.6.11+dfsg-1 [1018 kB] Get:107 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:108 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:109 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1+deb11u2 [311 kB] Get:110 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1+deb11u2 [772 kB] Get:111 http://deb.debian.org/debian bullseye/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:112 http://deb.debian.org/debian bullseye/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:113 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get:114 http://deb.debian.org/debian bullseye/main amd64 x11-common all 1:7.7+22 [252 kB] Get:115 http://deb.debian.org/debian bullseye/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:116 http://deb.debian.org/debian bullseye/main amd64 libtk8.6 amd64 8.6.11-2 [780 kB] Get:117 http://deb.debian.org/debian bullseye/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get:118 http://deb.debian.org/debian bullseye/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get:119 http://deb.debian.org/debian bullseye/main amd64 python3-tk amd64 3.9.2-1 [101 kB] Get:120 http://deb.debian.org/debian bullseye/main amd64 python3-seaborn all 0.11.1-1 [206 kB] Get:121 http://deb.debian.org/debian bullseye/main amd64 python3-pygtrie all 2.2-1.1 [16.4 kB] Get:122 http://deb.debian.org/debian bullseye/main amd64 seqmagick all 0.8.4-1 [42.4 kB] Get:123 http://deb.debian.org/debian bullseye/main amd64 python3-backcall all 0.2.0-1 [10.7 kB] Get:124 http://deb.debian.org/debian bullseye/main amd64 python3-parso all 0.8.1-1 [65.9 kB] Get:125 http://deb.debian.org/debian bullseye/main amd64 python3-jedi all 0.18.0-1 [620 kB] Get:126 http://deb.debian.org/debian bullseye/main amd64 python3-ptyprocess all 0.7.0-1 [13.6 kB] Get:127 http://deb.debian.org/debian bullseye/main amd64 python3-pexpect all 4.8.0-2 [54.9 kB] Get:128 http://deb.debian.org/debian bullseye/main amd64 python3-pickleshare all 0.7.5-3 [7604 B] Get:129 http://deb.debian.org/debian bullseye/main amd64 python3-wcwidth all 0.1.9+dfsg1-2 [18.2 kB] Get:130 http://deb.debian.org/debian bullseye/main amd64 python3-prompt-toolkit all 3.0.14-1 [258 kB] Get:131 http://deb.debian.org/debian bullseye/main amd64 python3-pygments all 2.7.1+dfsg-2.1 [657 kB] Get:132 http://deb.debian.org/debian bullseye/main amd64 python3-ipython-genutils all 0.2.0-4 [21.4 kB] Get:133 http://deb.debian.org/debian bullseye/main amd64 python3-traitlets all 5.0.5-1 [84.4 kB] Get:134 http://deb.debian.org/debian bullseye/main amd64 python3-ipython all 7.20.0-1+deb11u1 [517 kB] Get:135 http://deb.debian.org/debian bullseye/main amd64 ipython3 all 7.20.0-1+deb11u1 [25.0 kB] Get:136 http://deb.debian.org/debian bullseye/main amd64 python3-ipdb all 0.13.3-1 [15.8 kB] Get:137 http://deb.debian.org/debian bullseye/main amd64 mafft amd64 7.475-1 [1051 kB] Get:138 http://deb.debian.org/debian bullseye/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-1 [139 kB] Get:139 http://deb.debian.org/debian bullseye/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-1 [57.1 kB] Get:140 http://deb.debian.org/debian bullseye/main amd64 libnl-3-200 amd64 3.4.0-1+b1 [63.6 kB] Get:141 http://deb.debian.org/debian bullseye/main amd64 libnl-route-3-200 amd64 3.4.0-1+b1 [161 kB] Get:142 http://deb.debian.org/debian bullseye/main amd64 libibverbs1 amd64 33.2-1 [59.4 kB] Get:143 http://deb.debian.org/debian bullseye/main amd64 ibverbs-providers amd64 33.2-1 [253 kB] Get:144 http://deb.debian.org/debian bullseye/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.1 [169 kB] Get:145 http://deb.debian.org/debian bullseye/main amd64 libnuma1 amd64 2.0.12-1+b1 [26.3 kB] Get:146 http://deb.debian.org/debian bullseye/main amd64 libpsm2-2 amd64 11.2.185-1 [181 kB] Get:147 http://deb.debian.org/debian bullseye/main amd64 librdmacm1 amd64 33.2-1 [68.9 kB] Get:148 http://deb.debian.org/debian bullseye/main amd64 libfabric1 amd64 1.11.0-2 [521 kB] Get:149 http://deb.debian.org/debian bullseye/main amd64 libhwloc15 amd64 2.4.1+dfsg-1 [150 kB] Get:150 http://deb.debian.org/debian bullseye/main amd64 libpciaccess0 amd64 0.16-1 [53.6 kB] Get:151 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:152 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get:153 http://deb.debian.org/debian bullseye/main amd64 libxnvctrl0 amd64 470.141.03-1~deb11u1 [27.5 kB] Get:154 http://deb.debian.org/debian bullseye/main amd64 ocl-icd-libopencl1 amd64 2.2.14-2 [42.5 kB] Get:155 http://deb.debian.org/debian bullseye/main amd64 libhwloc-plugins amd64 2.4.1+dfsg-1 [21.4 kB] Get:156 http://deb.debian.org/debian bullseye/main amd64 libpmix2 amd64 4.0.0-4.1+deb11u1 [553 kB] Get:157 http://deb.debian.org/debian bullseye/main amd64 libucx0 amd64 1.10.1~rc1+really.1.10.0-1 [649 kB] Get:158 http://deb.debian.org/debian bullseye/main amd64 libopenmpi3 amd64 4.1.0-10 [2370 kB] Get:159 http://deb.debian.org/debian bullseye/main amd64 iqtree amd64 1.6.12+dfsg-1 [2815 kB] Get:160 http://deb.debian.org/debian bullseye/main amd64 raxml amd64 8.2.12+dfsg-6+b4 [1434 kB] Get:161 http://deb.debian.org/debian bullseye/main amd64 fasttree amd64 2.1.11-2 [181 kB] Get:162 http://deb.debian.org/debian bullseye/main amd64 vcftools amd64 0.1.16-2 [426 kB] Get:163 http://deb.debian.org/debian bullseye/main amd64 augur all 11.0.0-1 [142 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 87.9 MB in 1s (92.0 MB/s) Selecting previously unselected package perl-modules-5.32. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6674 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.32_5.32.1-4+deb11u3_all.deb ... Unpacking perl-modules-5.32 (5.32.1-4+deb11u3) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.19-2_amd64.deb ... Unpacking libgdbm6:amd64 (1.19-2) ... Selecting previously unselected package libgdbm-compat4:amd64. 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Setting up libpython3.9-minimal:amd64 (3.9.2-1) ... Setting up libexpat1:amd64 (2.2.10-2+deb11u5) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8939 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.9.2-3_amd64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../02-mailcap_3.69_all.deb ... Unpacking mailcap (3.69) ... Selecting previously unselected package mime-support. Preparing to unpack .../03-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../04-libmpdec3_2.5.1-1_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-1) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../05-libncursesw6_6.2+20201114-2+deb11u2_amd64.deb ... Unpacking libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Selecting previously unselected package readline-common. Preparing to unpack .../06-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../07-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../08-libsqlite3-0_3.34.1-3_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.34.1-3) ... Selecting previously unselected package libpython3.9-stdlib:amd64. Preparing to unpack .../09-libpython3.9-stdlib_3.9.2-1_amd64.deb ... Unpacking libpython3.9-stdlib:amd64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../10-python3.9_3.9.2-1_amd64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../11-libpython3-stdlib_3.9.2-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9401 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_amd64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_1.1.1w-0+deb11u1_amd64.deb ... Unpacking openssl (1.1.1w-0+deb11u1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20210119_all.deb ... Unpacking ca-certificates (20210119) ... Selecting previously unselected package ucf. Preparing to unpack .../004-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package python3-six. Preparing to unpack .../005-python3-six_1.16.0-2_all.deb ... Unpacking python3-six (1.16.0-2) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../006-python3-pkg-resources_52.0.0-4_all.deb ... Unpacking python3-pkg-resources (52.0.0-4) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../007-libblas3_3.9.0-3+deb11u1_amd64.deb ... Unpacking libblas3:amd64 (3.9.0-3+deb11u1) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../008-libquadmath0_10.2.1-6_amd64.deb ... Unpacking libquadmath0:amd64 (10.2.1-6) ... 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Unpacking libpng16-16:amd64 (1.6.37-3) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../015-libfreetype6_2.10.4+dfsg-1+deb11u1_amd64.deb ... Unpacking libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Selecting previously unselected package libimagequant0:amd64. Preparing to unpack .../016-libimagequant0_2.12.2-1.1_amd64.deb ... Unpacking libimagequant0:amd64 (2.12.2-1.1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../017-libjpeg62-turbo_1%3a2.0.6-4_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.0.6-4) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../018-liblcms2-2_2.12~rc1-2_amd64.deb ... Unpacking liblcms2-2:amd64 (2.12~rc1-2) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../019-libdeflate0_1.7-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.7-1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../020-libjbig0_2.1-3.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1+b2) ... Selecting previously unselected package libwebp6:amd64. Preparing to unpack .../021-libwebp6_0.6.1-2.1+deb11u2_amd64.deb ... Unpacking libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../022-libtiff5_4.2.0-1+deb11u5_amd64.deb ... Unpacking libtiff5:amd64 (4.2.0-1+deb11u5) ... Selecting previously unselected package libwebpdemux2:amd64. Preparing to unpack .../023-libwebpdemux2_0.6.1-2.1+deb11u2_amd64.deb ... Unpacking libwebpdemux2:amd64 (0.6.1-2.1+deb11u2) ... Selecting previously unselected package libwebpmux3:amd64. Preparing to unpack .../024-libwebpmux3_0.6.1-2.1+deb11u2_amd64.deb ... Unpacking libwebpmux3:amd64 (0.6.1-2.1+deb11u2) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../025-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../026-libmd0_1.0.3-3_amd64.deb ... Unpacking libmd0:amd64 (1.0.3-3) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../027-libbsd0_0.11.3-1+deb11u1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.3-1+deb11u1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../028-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../029-libxcb1_1.14-3_amd64.deb ... Unpacking libxcb1:amd64 (1.14-3) ... Selecting previously unselected package python3-pil:amd64. Preparing to unpack .../030-python3-pil_8.1.2+dfsg-0.3+deb11u1_amd64.deb ... Unpacking python3-pil:amd64 (8.1.2+dfsg-0.3+deb11u1) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../031-python3-reportlab_3.5.59-2_all.deb ... Unpacking python3-reportlab (3.5.59-2) ... 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Preparing to unpack .../141-vcftools_0.1.16-2_amd64.deb ... Unpacking vcftools (0.1.16-2) ... Selecting previously unselected package augur. Preparing to unpack .../142-augur_11.0.0-1_all.deb ... Unpacking augur (11.0.0-1) ... Setting up media-types (4.0.0) ... Setting up liblcms2-2:amd64 (2.12~rc1-2) ... Setting up libpciaccess0:amd64 (0.16-1) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up ttf-bitstream-vera (1.10-8.1) ... Setting up libicu67:amd64 (67.1-7) ... Setting up libgslcblas0:amd64 (2.6+dfsg-2) ... Setting up libgsl25:amd64 (2.6+dfsg-2) ... Setting up fonts-lyx (2.3.6-1) ... Setting up perl-modules-5.32 (5.32.1-4+deb11u3) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libsqlite3-0:amd64 (3.34.1-3) ... Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libdeflate0:amd64 (1.7-1) ... Setting up libmetis5:amd64 (5.1.0.dfsg-7) ... Setting up libgomp1:amd64 (10.2.1-6) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libblas3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up libx11-data (2:1.7.2-1+deb11u2) ... Setting up libquadmath0:amd64 (10.2.1-6) ... Setting up libimagequant0:amd64 (2.12.2-1.1) ... Setting up libpng16-16:amd64 (1.6.37-3) ... Setting up libhwloc15:amd64 (2.4.1+dfsg-1) ... Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-1) ... Setting up libtcl8.6:amd64 (8.6.11+dfsg-1) ... Setting up libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Setting up libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Setting up libltdl7:amd64 (2.4.6-15) ... Setting up libfftw3-double3:amd64 (3.3.8-2) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up libnuma1:amd64 (2.0.12-1+b1) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up ocl-icd-libopencl1:amd64 (2.2.14-2) ... Setting up libnl-3-200:amd64 (3.4.0-1+b1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libpsm2-2 (11.2.185-1) ... Setting up fasttree (2.1.11-2) ... Setting up libtiff5:amd64 (4.2.0-1+deb11u5) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.1) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up python-matplotlib-data (3.3.4-1) ... Setting up openssl (1.1.1w-0+deb11u1) ... Setting up libwebpmux3:amd64 (0.6.1-2.1+deb11u2) ... Setting up libbsd0:amd64 (0.11.3-1+deb11u1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u4) ... Setting up libsuitesparseconfig5:amd64 (1:5.8.1+dfsg-2) ... Setting up libgdbm6:amd64 (1.19-2) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1) ... Setting up raxml (8.2.12+dfsg-6+b4) ... Setting up libamd2:amd64 (1:5.8.1+dfsg-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3) ... Setting up libcolamd2:amd64 (1:5.8.1+dfsg-2) ... Setting up libwebpdemux2:amd64 (0.6.1-2.1+deb11u2) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libnl-route-3-200:amd64 (3.4.0-1+b1) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libcamd2:amd64 (1:5.8.1+dfsg-2) ... Setting up libjs-jquery-ui (1.12.1+dfsg-8+deb11u2) ... Setting up libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Setting up libdsdp-5.8gf (5.8-9.4) ... Setting up libglpk40:amd64 (5.0-1) ... Setting up libgdbm-compat4:amd64 (1.19-2) ... Setting up ucf (3.0043) ... Setting up libperl5.32:amd64 (5.32.1-4+deb11u3) ... Setting up libccolamd2:amd64 (1:5.8.1+dfsg-2) ... Setting up libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Setting up libcholmod3:amd64 (1:5.8.1+dfsg-2) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Setting up libibverbs1:amd64 (33.2-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up ibverbs-providers:amd64 (33.2-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up libxext6:amd64 (2:1.3.3-1.1) ... Setting up libxnvctrl0:amd64 (470.141.03-1~deb11u1) ... Setting up perl (5.32.1-4+deb11u3) ... Setting up libumfpack5:amd64 (1:5.8.1+dfsg-2) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up mailcap (3.69) ... Setting up python3.9 (3.9.2-1) ... Setting up librdmacm1:amd64 (33.2-1) ... Setting up vcftools (0.1.16-2) ... Setting up libucx0:amd64 (1.10.1~rc1+really.1.10.0-1) ... Setting up libxft2:amd64 (2.3.2-2) ... Setting up mime-support (3.66) ... Setting up mafft (7.475-1) ... Setting up libtk8.6:amd64 (8.6.11-2) ... Setting up python3 (3.9.2-3) ... Setting up libhwloc-plugins:amd64 (2.4.1+dfsg-1) ... Setting up python3-tz (2021.1-1) ... Setting up python3-six (1.16.0-2) ... Setting up python3-pil:amd64 (8.1.2+dfsg-0.3+deb11u1) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-pygtrie (2.2-1.1) ... Setting up python3-wcwidth (0.1.9+dfsg1-2) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-certifi (2020.6.20-1) ... Setting up python3-cycler (0.10.0-3) ... Setting up python3-reportlab-accel:amd64 (3.5.59-2) ... Setting up python3-kiwisolver (1.3.1-1+b1) ... Setting up python3-idna (2.10-1) ... Setting up python3-pickleshare (0.7.5-3) ... Setting up python3-urllib3 (1.26.5-1~exp1) ... Setting up python3-reportlab (3.5.59-2) ... Setting up python3-pyrsistent:amd64 (0.15.5-1+b3) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-ptyprocess (0.7.0-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-prompt-toolkit (3.0.14-1) ... Setting up python3-distutils (3.9.2-1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-schedule (0.6.0-1) ... Setting up libfabric1 (1.11.0-2) ... Setting up python3-attr (20.3.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-backcall (0.2.0-1) ... Setting up libpmix2:amd64 (4.0.0-4.1+deb11u1) ... Setting up python3-parso (0.8.1-1) ... Setting up python3-cvxopt (1.2.5+dfsg-3+b1) ... Setting up python3-ipython-genutils (0.2.0-4) ... Setting up libopenmpi3:amd64 (4.1.0-10) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-tk:amd64 (3.9.2-1) ... Setting up python3-zipp (1.0.0-3) ... Setting up iqtree (1.6.12+dfsg-1) ... Setting up python3-pygments (2.7.1+dfsg-2.1) ... Setting up python3-packaging (20.9-2) ... Setting up python3-chardet (4.0.0-1) ... Setting up python3-pexpect (4.8.0-2) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-traitlets (5.0.5-1) ... Setting up python3-biopython (1.78+dfsg-4) ... Setting up python3-dendropy (4.5.1-1) ... Setting up python3-boto (2.49.0-3) ... Setting up python3-matplotlib (3.3.4-1) ... Setting up python3-scipy (1.6.0-2) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up python3-jedi (0.18.0-1) ... Setting up seqmagick (0.8.4-1) ... Setting up python3-pandas-lib:amd64 (1.1.5+dfsg-2) ... Setting up python3-pandas (1.1.5+dfsg-2) ... Setting up python3-jsonschema (3.2.0-3) ... Setting up python3-ipython (7.20.0-1+deb11u1) ... Setting up python3-bcbio-gff (0.6.6-3) ... Setting up ipython3 (7.20.0-1+deb11u1) ... Setting up python3-ipdb (0.13.3-1) ... Setting up python3-treetime (0.8.1-1) ... Setting up python3-seaborn (0.11.1-1) ... Setting up augur (11.0.0-1) ... Processing triggers for libc-bin (2.31-13+deb11u8) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m51.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-get', '-y', 'install', 'augur'] 0m51.0s INFO: Running scripts post_install 0m51.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_install_exceptions'] 0m51.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_install_exceptions'] 0m51.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg'] 0m52.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg'] 0m52.5s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpw78y0qkg to sid 0m52.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m52.5s INFO: Running scripts pre_distupgrade 0m52.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m52.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m52.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_distupgrade_exceptions'] 0m52.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_distupgrade_exceptions'] 0m52.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m52.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m52.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m52.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m52.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m52.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m52.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-get', 'update'] 0m57.1s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9872 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7196 kB] Fetched 17.3 MB in 3s (5033 kB/s) Reading package lists... 0m57.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-get', 'update'] 0m57.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-get', '-yf', 'dist-upgrade'] 3m36.1s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libamd2 libcamd2 libccolamd2 libcholmod3 libcolamd2 libicu67 libmetis5 libmpdec3 libperl5.32 libpython3.9-minimal libpython3.9-stdlib libquadmath0 libsuitesparseconfig5 libtiff5 libumfpack5 libwebp6 perl-modules-5.32 python3-backcall python3-boto python3-ipython-genutils python3-pickleshare python3-pyrsistent python3.9 python3.9-minimal ucf Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0 libdb5.3 libdsdp-5.8gf libevent-core-2.1-7 libevent-pthreads-2.1-7 libext2fs2 libgdbm-compat4 libgdbm6 libgnutls30 libgsl25 libhogweed6 libnettle8 libopenmpi3 libpmix2 libpng16-16 librdmacm1 libreadline8 libsemanage1 libtirpc3 python3-reportlab-accel The following NEW packages will be installed: fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 gcc-14-base libamd-comgr2 libamd3 libamdhip64-5 libapt-pkg6.0t64 libatomic1 libcairo2 libcamd3 libcap2 libccolamd3 libcholmod5 libcolamd3 libdb5.3t64 libdrm-amdgpu1 libdrm-common libdrm2 libdsdp-5.8t64 libedit2 libelf1t64 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libext2fs2t64 libffi8 libfile-find-rule-perl libfontenc1 libfribidi0 libgdbm-compat4t64 libgdbm6t64 libglib2.0-0t64 libgnutls30t64 libgraphite2-3 libgsl27 libharfbuzz0b libhogweed6t64 libhsa-runtime64-1 libhsakmt1 libicu72 liblerc4 libllvm17t64 libmunge2 libnettle8t64 libnumber-compare-perl libopenjp2-7 libopenmpi3t64 libperl5.38t64 libpixman-1-0 libpmix2t64 libpng16-16t64 libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libraqm0 librdmacm1t64 libreadline8t64 libsemanage2 libsepol2 libsharpyuv0 libssl3t64 libsuitesparseconfig7 libtext-glob-perl libtiff6 libtirpc3t64 libumfpack6 libunistring5 libwebp7 libxcb-render0 libxcb-shm0 libxslt1.1 libz3-4 netbase perl-modules-5.38 pigz python3-appdirs python3-asttokens python3-boto3 python3-botocore python3-brotli python3-cairo python3-cffi-backend python3-charset-normalizer python3-contourpy python3-executing python3-fonttools python3-freetype python3-fs python3-hatch-vcs python3-hatchling python3-isodate python3-jmespath python3-jsonschema-specifications python3-lxml python3-lz4 python3-matplotlib-inline python3-mpmath python3-networkx python3-pathspec python3-pil.imagetk python3-pluggy python3-pure-eval python3-pyfaidx python3-pyfastx python3-referencing python3-rlpycairo python3-rpds-py python3-s3transfer python3-setuptools-scm python3-stack-data python3-sympy python3-toml python3-trove-classifiers python3-typeshed python3-typing-extensions python3-ufolib2 python3-unicodedata2 python3-xopen python3-zstandard python3.11 python3.11-minimal sgml-base unicode-data usrmerge w3c-sgml-lib xfonts-encodings xfonts-utils xml-core The following packages will be upgraded: adduser apt augur base-files base-passwd bash blt bsdutils ca-certificates coreutils dash debconf debian-archive-keyring debianutils diffutils dpkg e2fsprogs findutils fontconfig-config fonts-lyx gcc-10-base gcc-9-base gpgv grep gzip hostname ibverbs-providers init-system-helpers ipython3 iqtree libacl1 libattr1 libaudit-common libaudit1 libblas3 libblkid1 libbrotli1 libbsd0 libbz2-1.0 libc-bin libc6 libcap-ng0 libcom-err2 libcrypt1 libdebconfclient0 libdeflate0 libexpat1 libfabric1 libfftw3-double3 libfontconfig1 libfreetype6 libgcc-s1 libgcrypt20 libgfortran5 libglpk40 libgmp10 libgomp1 libgpg-error0 libgslcblas0 libgssapi-krb5-2 libhwloc-plugins libhwloc15 libibverbs1 libidn2-0 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libltdl7 liblz4-1 liblzma5 libmd0 libmetis5 libmount1 libncursesw6 libnl-3-200 libnl-route-3-200 libnsl2 libnuma1 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpciaccess0 libpcre2-8-0 libpcre3 libpsm-infinipath1 libpsm2-2 libpython3-stdlib libquadmath0 libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libstdc++6 libsystemd0 libtasn1-6 libtcl8.6 libtinfo6 libtirpc-common libtk8.6 libucx0 libudev1 libuuid1 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxcb1 libxext6 libxft2 libxml2 libxnvctrl0 libxrender1 libxxhash0 libzstd1 login logsave lsb-base mafft mailcap mawk media-types mount ncurses-base ncurses-bin ocl-icd-libopencl1 openssl passwd perl perl-base python-matplotlib-data python3 python3-attr python3-backcall python3-bcbio-gff python3-biopython python3-boto python3-certifi python3-chardet python3-cvxopt python3-cycler python3-dateutil python3-decorator python3-dendropy python3-distutils python3-idna python3-importlib-metadata python3-ipdb python3-ipython python3-ipython-genutils python3-jedi python3-jsonschema python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal python3-more-itertools python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pickleshare python3-pil python3-pkg-resources python3-prompt-toolkit python3-ptyprocess python3-pygments python3-pygtrie python3-pyparsing python3-pyrsistent python3-reportlab python3-requests python3-schedule python3-scipy python3-seaborn python3-setuptools python3-six python3-tk python3-traitlets python3-treetime python3-tz python3-urllib3 python3-wcwidth python3-zipp raxml readline-common sed sensible-utils seqmagick sysvinit-utils tar tk8.6-blt2.5 ttf-bitstream-vera tzdata ucf util-linux vcftools x11-common zlib1g 213 upgraded, 128 newly installed, 20 to remove and 0 not upgraded. Need to get 250 MB of archives. After this operation, 764 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 base-files amd64 13.1 [70.8 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.37-18 [2757 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.37-18 [603 kB] Get:4 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14-20240330-1 [43.2 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14-20240330-1 [71.9 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.40-6 [164 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.42-4+b1 [262 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.5-2+b2 [74.9 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.40-6 [194 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.40-6 [135 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.40-6 [32.0 kB] Get:12 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.13+dfsg1-4 [616 kB] Get:13 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.40-6 [1205 kB] Get:14 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.6.1+really5.4.5-1 [240 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.5+dfsg2-2 [295 kB] Get:16 http://deb.debian.org/debian sid/main amd64 tar amd64 1.35+dfsg-3 [813 kB] Get:17 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.22.6 [1510 kB] Get:18 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.09-1 [32.3 kB] Get:19 http://deb.debian.org/debian sid/main amd64 lsb-base all 11.6 [4584 B] Get:20 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+23 [252 kB] Get:21 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.17 [89.0 kB] Get:22 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2.21-2 [1492 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.66-5 [27.4 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.47-3 [77.8 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.10.3-2 [708 kB] Get:26 http://deb.debian.org/debian sid/main amd64 liblz4-1 amd64 1.9.4-2 [61.4 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 255.4-1+b1 [364 kB] Get:28 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.40-6 [100 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2+b1 [559 kB] Get:30 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.3.dfsg-3.1 [87.6 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.2.1-3 [2244 kB] Get:32 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.4-3.1 [2950 kB] Get:33 http://deb.debian.org/debian sid/main amd64 dash amd64 0.5.12-6 [92.1 kB] Get:34 http://deb.debian.org/debian sid/main amd64 diffutils amd64 1:3.10-1 [375 kB] Get:35 http://deb.debian.org/debian sid/main amd64 findutils amd64 4.9.0-5 [636 kB] Get:36 http://deb.debian.org/debian sid/main amd64 grep amd64 3.11-4 [431 kB] Get:37 http://deb.debian.org/debian sid/main amd64 gzip amd64 1.12-1.1 [133 kB] Get:38 http://deb.debian.org/debian sid/main amd64 hostname amd64 3.23+nmu2 [10.6 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.4+20240414-1 [135 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.4+20240414-1 [344 kB] Get:41 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.4+20240414-1 [433 kB] Get:42 http://deb.debian.org/debian sid/main amd64 perl-modules-5.38 all 5.38.2-3.2 [2899 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-7 [697 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.23-5.1+b1 [73.0 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.23-5.1+b1 [48.8 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libperl5.38t64 amd64 5.38.2-3.2+b2 [4279 kB] Get:47 http://deb.debian.org/debian sid/main amd64 perl amd64 5.38.2-3.2+b2 [236 kB] Get:48 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.38.2-3.2+b2 [1644 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:3.1.2-2.1 [11.4 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.8.5-1 [17.1 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:3.1.2-2.1 [48.5 kB] Get:52 http://deb.debian.org/debian sid/main amd64 debconf all 1.5.86 [119 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.5.3-7 [67.7 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.36-4 [89.8 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.5.3-7 [54.4 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.5.3-7 [265 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libbz2-1.0 amd64 1.0.8-5.1 [38.0 kB] Get:58 http://deb.debian.org/debian sid/main amd64 sed amd64 4.9-2 [329 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.271+b3 [10.2 kB] Get:60 http://deb.debian.org/debian sid/main amd64 base-passwd amd64 3.6.3 [50.8 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14-20240330-1 [713 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libnettle8t64 amd64 3.9.1-2.2 [296 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libhogweed6t64 amd64 3.9.1-2.2 [328 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.3-4 [418 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.2-1 [425 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.5-2 [1437 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0t64 amd64 2.9.2 [989 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 255.4-1+b1 [126 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.2-2+b1 [26.6 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.7-2 [128 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.19.0-3+b2 [48.9 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.5-1 [9908 B] Get:74 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.5-2 [277 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.5-1+b3 [90.3 kB] Get:76 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.13+dfsg1-4 [973 kB] Get:77 http://deb.debian.org/debian sid/main amd64 adduser all 3.137 [140 kB] Get:78 http://deb.debian.org/debian sid/main amd64 gpgv amd64 2.2.40-3 [649 kB] Get:79 http://deb.debian.org/debian sid/main amd64 debian-archive-keyring all 2023.4 [161 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.5.5-1 [47.0 kB] Get:81 http://deb.debian.org/debian sid/main amd64 apt amd64 2.9.2 [1396 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:83 http://deb.debian.org/debian sid/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:84 http://deb.debian.org/debian sid/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get:85 http://deb.debian.org/debian sid/main amd64 usrmerge all 39 [13.1 kB] Get:86 http://deb.debian.org/debian sid/main amd64 init-system-helpers all 1.66 [39.0 kB] Get:87 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.4+20240414-1 [269 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get:89 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14-20240330-1 [836 kB] Get:90 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get:91 http://deb.debian.org/debian sid/main amd64 python3-cvxopt amd64 1.3.0+dfsg-1+b5 [290 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libdsdp-5.8t64 amd64 5.8-10.1 [181 kB] Get:93 http://deb.debian.org/debian sid/main amd64 libnl-route-3-200 amd64 3.7.0-0.3 [181 kB] Get:94 http://deb.debian.org/debian sid/main amd64 libnl-3-200 amd64 3.7.0-0.3 [59.0 kB] Get:95 http://deb.debian.org/debian sid/main amd64 ibverbs-providers amd64 50.0-2+b1 [342 kB] Get:96 http://deb.debian.org/debian sid/main amd64 libibverbs1 amd64 50.0-2+b1 [61.7 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libmd0 amd64 1.1.0-2 [35.8 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libedit2 amd64 3.1-20230828-1 [93.1 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:102 http://deb.debian.org/debian sid/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get:103 http://deb.debian.org/debian sid/main amd64 libllvm17t64 amd64 1:17.0.6-9+b2 [23.7 MB] Get:104 http://deb.debian.org/debian sid/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b1 [13.0 MB] Get:105 http://deb.debian.org/debian sid/main amd64 libdrm-common all 2.4.120-2 [7688 B] Get:106 http://deb.debian.org/debian sid/main amd64 libdrm2 amd64 2.4.120-2 [38.1 kB] Get:107 http://deb.debian.org/debian sid/main amd64 libdrm-amdgpu1 amd64 2.4.120-2 [21.4 kB] Get:108 http://deb.debian.org/debian sid/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get:109 http://deb.debian.org/debian sid/main amd64 libnuma1 amd64 2.0.18-1 [21.9 kB] Get:110 http://deb.debian.org/debian sid/main amd64 libhsakmt1 amd64 5.7.0-1 [60.7 kB] Get:111 http://deb.debian.org/debian sid/main amd64 libhsa-runtime64-1 amd64 5.7.1-2 [504 kB] Get:112 http://deb.debian.org/debian sid/main amd64 libamdhip64-5 amd64 5.7.1-3 [8760 kB] Get:113 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14-20240330-1 [9216 B] Get:114 http://deb.debian.org/debian sid/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB] Get:115 http://deb.debian.org/debian sid/main amd64 libpsm2-2 amd64 11.2.185-2 [180 kB] Get:116 http://deb.debian.org/debian sid/main amd64 libfabric1 amd64 1.17.0-3+b1 [628 kB] Get:117 http://deb.debian.org/debian sid/main amd64 librdmacm1t64 amd64 50.0-2+b1 [70.2 kB] Get:118 http://deb.debian.org/debian sid/main amd64 libucx0 amd64 1.16.0+ds-5 [1109 kB] Get:119 http://deb.debian.org/debian sid/main amd64 libopenmpi3t64 amd64 4.1.6-12 [2428 kB] Get:120 http://deb.debian.org/debian sid/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-8.1+b3 [132 kB] Get:121 http://deb.debian.org/debian sid/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-8.1+b3 [54.1 kB] Get:122 http://deb.debian.org/debian sid/main amd64 libpciaccess0 amd64 0.17-3 [51.6 kB] Get:123 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:124 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-1 [144 kB] Get:125 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.7-1 [802 kB] Get:126 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:127 http://deb.debian.org/debian sid/main amd64 libxnvctrl0 amd64 535.171.04-1 [13.8 kB] Get:128 http://deb.debian.org/debian sid/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b1 [40.3 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libhwloc15 amd64 2.10.0-1+b1 [161 kB] Get:130 http://deb.debian.org/debian sid/main amd64 libhwloc-plugins amd64 2.10.0-1+b1 [18.0 kB] Get:131 http://deb.debian.org/debian sid/main amd64 libmunge2 amd64 0.5.15-4 [19.8 kB] Get:132 http://deb.debian.org/debian sid/main amd64 libpmix2t64 amd64 5.0.2-3 [652 kB] Get:133 http://deb.debian.org/debian sid/main amd64 logsave amd64 1.47.0-2.4 [20.1 kB] Get:134 http://deb.debian.org/debian sid/main amd64 libext2fs2t64 amd64 1.47.0-2.4 [206 kB] Get:135 http://deb.debian.org/debian sid/main amd64 e2fsprogs amd64 1.47.0-2.4 [571 kB] Get:136 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14-20240330-1 [136 kB] Get:137 http://deb.debian.org/debian sid/main amd64 libsuitesparseconfig7 amd64 1:7.7.0+dfsg-2 [22.4 kB] Get:138 http://deb.debian.org/debian sid/main amd64 libamd3 amd64 1:7.7.0+dfsg-2 [39.0 kB] Get:139 http://deb.debian.org/debian sid/main amd64 libcamd3 amd64 1:7.7.0+dfsg-2 [36.0 kB] Get:140 http://deb.debian.org/debian sid/main amd64 libccolamd3 amd64 1:7.7.0+dfsg-2 [37.9 kB] Get:141 http://deb.debian.org/debian sid/main amd64 libcolamd3 amd64 1:7.7.0+dfsg-2 [31.3 kB] Get:142 http://deb.debian.org/debian sid/main amd64 libcholmod5 amd64 1:7.7.0+dfsg-2 [623 kB] Get:143 http://deb.debian.org/debian sid/main amd64 libfftw3-double3 amd64 3.3.10-1+b2 [779 kB] Get:144 http://deb.debian.org/debian sid/main amd64 libltdl7 amd64 2.4.7-7 [393 kB] Get:145 http://deb.debian.org/debian sid/main amd64 libglpk40 amd64 5.0-1+b1 [397 kB] Get:146 http://deb.debian.org/debian sid/main amd64 libgslcblas0 amd64 2.7.1+dfsg-6+b1 [107 kB] Get:147 http://deb.debian.org/debian sid/main amd64 libgsl27 amd64 2.7.1+dfsg-6+b1 [934 kB] Get:148 http://deb.debian.org/debian sid/main amd64 libumfpack6 amd64 1:7.7.0+dfsg-2 [267 kB] Get:149 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get:150 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:151 http://deb.debian.org/debian sid/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get:152 http://deb.debian.org/debian sid/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get:153 http://deb.debian.org/debian sid/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get:154 http://deb.debian.org/debian sid/main amd64 python3-tk amd64 3.12.3-1 [109 kB] Get:155 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.11.4-6 [19.5 MB] Get:156 http://deb.debian.org/debian sid/main amd64 python3-reportlab all 4.2.0-1 [1149 kB] Get:157 http://deb.debian.org/debian sid/main amd64 python3-pyrsistent amd64 0.20.0-1+b1 [66.0 kB] Get:158 http://deb.debian.org/debian sid/main amd64 python3-pil amd64 10.3.0-2 [564 kB] Get:159 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 2.1.4+dfsg-7 [7883 kB] Get:160 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.26.4+ds-6 [5472 kB] Get:161 http://deb.debian.org/debian sid/main amd64 python3-matplotlib amd64 3.6.3-2 [8167 kB] Get:162 http://deb.debian.org/debian sid/main amd64 python3-kiwisolver amd64 1.4.5-1 [80.7 kB] Get:163 http://deb.debian.org/debian sid/main amd64 python3-biopython amd64 1.83+dfsg1-2 [1634 kB] Get:164 http://deb.debian.org/debian sid/main amd64 python3-distutils all 3.12.3-1 [131 kB] Get:165 http://deb.debian.org/debian sid/main amd64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get:166 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get:167 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get:168 http://deb.debian.org/debian sid/main amd64 tzdata all 2024a-3 [255 kB] Get:169 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1 [1034 kB] Get:170 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:171 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:172 http://deb.debian.org/debian sid/main amd64 libfontenc1 amd64 1:1.1.8-1 [23.0 kB] Get:173 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:174 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get:175 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get:176 http://deb.debian.org/debian sid/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:177 http://deb.debian.org/debian sid/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get:178 http://deb.debian.org/debian sid/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get:179 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get:180 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get:181 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:182 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b1 [54.2 kB] Get:183 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.14-1 [784 kB] Get:184 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get:185 http://deb.debian.org/debian sid/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get:186 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get:187 http://deb.debian.org/debian sid/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b1 [29.1 kB] Get:188 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:189 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:190 http://deb.debian.org/debian sid/main amd64 python3-pil.imagetk amd64 10.3.0-2 [79.5 kB] Get:191 http://deb.debian.org/debian sid/main amd64 libimagequant0 amd64 2.18.0-1 [35.0 kB] Get:192 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-2+b2 [167 kB] Get:193 http://deb.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get:194 http://deb.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get:195 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get:196 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.78.4-7 [1455 kB] Get:197 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get:198 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get:199 http://deb.debian.org/debian sid/main amd64 libraqm0 amd64 0.10.1-1+b1 [14.2 kB] Get:200 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get:201 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get:202 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get:203 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.3.2-0.4+b1 [108 kB] Get:204 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.3.2-0.4+b1 [308 kB] Get:205 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get:206 http://deb.debian.org/debian sid/main amd64 libwebpdemux2 amd64 1.3.2-0.4+b1 [107 kB] Get:207 http://deb.debian.org/debian sid/main amd64 libwebpmux3 amd64 1.3.2-0.4+b1 [120 kB] Get:208 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get:209 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-1 [114 kB] Get:210 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-1 [105 kB] Get:211 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB] Get:212 http://deb.debian.org/debian sid/main amd64 python3-cairo amd64 1.26.0-1 [142 kB] Get:213 http://deb.debian.org/debian sid/main amd64 python3-freetype all 2.4.0-1 [80.3 kB] Get:214 http://deb.debian.org/debian sid/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get:215 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:216 http://deb.debian.org/debian sid/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:217 http://deb.debian.org/debian sid/main amd64 fonts-lyx all 2.4.0~RC4-1 [189 kB] Get:218 http://deb.debian.org/debian sid/main amd64 python-matplotlib-data all 3.6.3-2 [2744 kB] Get:219 http://deb.debian.org/debian sid/main amd64 python3-six all 1.16.0-6 [16.3 kB] Get:220 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-2 [79.4 kB] Get:221 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get:222 http://deb.debian.org/debian sid/main amd64 python3-contourpy amd64 1.0.7-3 [285 kB] Get:223 http://deb.debian.org/debian sid/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get:224 http://deb.debian.org/debian sid/main amd64 python3-brotli amd64 1.1.0-2+b3 [312 kB] Get:225 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.10.0-1 [66.2 kB] Get:226 http://deb.debian.org/debian sid/main amd64 python3-more-itertools all 10.2.0-1 [59.9 kB] Get:227 http://deb.debian.org/debian sid/main amd64 python3-zipp all 1.0.0-6 [6696 B] Get:228 http://deb.debian.org/debian sid/main amd64 python3-importlib-metadata all 4.12.0-1 [24.9 kB] Get:229 http://deb.debian.org/debian sid/main amd64 python3-attr all 23.2.0-2 [65.5 kB] Get:230 http://deb.debian.org/debian sid/main amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get:231 http://deb.debian.org/debian sid/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get:232 http://deb.debian.org/debian sid/main amd64 python3-sympy all 1.12-7 [3869 kB] Get:233 http://deb.debian.org/debian sid/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get:234 http://deb.debian.org/debian sid/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get:235 http://deb.debian.org/debian sid/main amd64 python3-fs all 2.4.16-4 [95.4 kB] Get:236 http://deb.debian.org/debian sid/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get:237 http://deb.debian.org/debian sid/main amd64 python3-lxml amd64 5.2.1-1 [1995 kB] Get:238 http://deb.debian.org/debian sid/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b3 [25.5 kB] Get:239 http://deb.debian.org/debian sid/main amd64 python3-unicodedata2 amd64 15.1.0+ds-1+b1 [299 kB] Get:240 http://deb.debian.org/debian sid/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get:241 http://deb.debian.org/debian sid/main amd64 python3-fonttools amd64 4.46.0-1 [1623 kB] Get:242 http://deb.debian.org/debian sid/main amd64 python3-packaging all 24.0-1 [45.5 kB] Get:243 http://deb.debian.org/debian sid/main amd64 libqhull-r8.0 amd64 2020.2-6+b1 [245 kB] Get:244 http://deb.debian.org/debian sid/main amd64 sgml-base all 1.31 [15.4 kB] Get:245 http://deb.debian.org/debian sid/main amd64 xml-core all 0.19 [20.1 kB] Get:246 http://deb.debian.org/debian sid/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:247 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:248 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get:249 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-4 [69.3 kB] Get:250 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.45.3-1 [896 kB] Get:251 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get:252 http://deb.debian.org/debian sid/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get:253 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get:254 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get:255 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get:256 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get:257 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get:258 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get:259 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.0-2.4 [20.2 kB] Get:260 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:261 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-3+b2 [40.3 kB] Get:262 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB] Get:263 http://deb.debian.org/debian sid/main amd64 mount amd64 2.40-6 [147 kB] Get:264 http://deb.debian.org/debian sid/main amd64 pigz amd64 2.8-1 [62.7 kB] Get:265 http://deb.debian.org/debian sid/main amd64 libpam-runtime all 1.5.3-7 [140 kB] Get:266 http://deb.debian.org/debian sid/main amd64 libacl1 amd64 2.3.2-1 [32.4 kB] Get:267 http://deb.debian.org/debian sid/main amd64 libattr1 amd64 1:2.5.2-1 [22.5 kB] Get:268 http://deb.debian.org/debian sid/main amd64 libpcre3 amd64 2:8.39-15+b1 [342 kB] Get:269 http://deb.debian.org/debian sid/main amd64 mawk amd64 1.3.4.20240123-1 [136 kB] Get:270 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get:271 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get:272 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:273 http://deb.debian.org/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:274 http://deb.debian.org/debian sid/main amd64 python3-bcbio-gff all 0.7.1-1 [33.5 kB] Get:275 http://deb.debian.org/debian sid/main amd64 python3-isodate all 0.6.1-2 [24.9 kB] Get:276 http://deb.debian.org/debian sid/main amd64 python3-pathspec all 0.12.1-1 [28.1 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amd64 libquadmath0 amd64 14-20240330-1 [147 kB] Get:331 http://deb.debian.org/debian sid/main amd64 gcc-10-base amd64 10.5.0-4 [36.7 kB] Get:332 http://deb.debian.org/debian sid/main amd64 gcc-9-base amd64 9.5.0-6 [29.0 kB] Get:333 http://deb.debian.org/debian sid/main amd64 iqtree amd64 2.0.7+dfsg-1+b1 [3671 kB] Get:334 http://deb.debian.org/debian sid/main amd64 libmetis5 amd64 5.1.0.dfsg-7+b1 [175 kB] Get:335 http://deb.debian.org/debian sid/main amd64 libss2 amd64 1.47.0-2.4 [25.0 kB] Get:336 http://deb.debian.org/debian sid/main amd64 mailcap all 3.70+nmu1 [32.0 kB] Get:337 http://deb.debian.org/debian sid/main amd64 python3-backcall all 0.2.0-4 [12.1 kB] Get:338 http://deb.debian.org/debian sid/main amd64 python3-boto all 2.49.0-4.1 [734 kB] Get:339 http://deb.debian.org/debian sid/main amd64 python3-ipython-genutils all 0.2.0-6 [21.6 kB] Get:340 http://deb.debian.org/debian sid/main amd64 python3-pickleshare all 0.7.5-5 [7600 B] Get:341 http://deb.debian.org/debian sid/main 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20866 files and directories currently installed.) Preparing to unpack .../libselinux1_3.5-2+b2_amd64.deb ... Unpacking libselinux1:amd64 (3.5-2+b2) over (3.1-3) ... Setting up libselinux1:amd64 (3.5-2+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20868 files and directories currently installed.) Preparing to unpack .../libmount1_2.40-6_amd64.deb ... Unpacking libmount1:amd64 (2.40-6) over (2.36.1-8+deb11u1) ... Setting up libmount1:amd64 (2.40-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20869 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.40-6_amd64.deb ... Unpacking libsmartcols1:amd64 (2.40-6) over (2.36.1-8+deb11u1) ... Setting up libsmartcols1:amd64 (2.40-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20870 files and directories currently installed.) Preparing to unpack .../libuuid1_2.40-6_amd64.deb ... Unpacking libuuid1:amd64 (2.40-6) over (2.36.1-8+deb11u1) ... Setting up libuuid1:amd64 (2.40-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20870 files and directories currently installed.) Preparing to unpack .../login_1%3a4.13+dfsg1-4_amd64.deb ... Unpacking login (1:4.13+dfsg1-4) over (1:4.8.1-1) ... Setting up login (1:4.13+dfsg1-4) ... Installing new version of config file /etc/login.defs ... Installing new version of config file /etc/pam.d/login ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20883 files and directories currently installed.) Preparing to unpack .../util-linux_2.40-6_amd64.deb ... Unpacking util-linux (2.40-6) over (2.36.1-8+deb11u1) ... dpkg: warning: unable to delete old directory '/usr/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/usr/lib/udev': Directory not empty Setting up util-linux (2.40-6) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20852 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.5+dfsg2-2_amd64.deb ... Unpacking libzstd1:amd64 (1.5.5+dfsg2-2) over (1.4.8+dfsg-2.1) ... Setting up libzstd1:amd64 (1.5.5+dfsg2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20852 files and directories currently installed.) Preparing to unpack .../tar_1.35+dfsg-3_amd64.deb ... Unpacking tar (1.35+dfsg-3) over (1.34+dfsg-1+deb11u1) ... Setting up tar (1.35+dfsg-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20853 files and directories currently installed.) Preparing to unpack .../archives/dpkg_1.22.6_amd64.deb ... Unpacking dpkg (1.22.6) over (1.20.13) ... Setting up dpkg (1.22.6) ... Installing new version of config file /etc/cron.daily/dpkg ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20845 files and directories currently installed.) Preparing to unpack .../archives/lsb-base_11.6_all.deb ... Unpacking lsb-base (11.6) over (11.1.0) ... Preparing to unpack .../sysvinit-utils_3.09-1_amd64.deb ... Unpacking sysvinit-utils (3.09-1) over (2.96-7+deb11u1) ... dpkg: warning: unable to delete old directory '/lib/init': Directory not empty Setting up sysvinit-utils (3.09-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20844 files and directories currently installed.) Preparing to unpack .../x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) over (1:7.7+22) ... Preparing to unpack .../debianutils_5.17_amd64.deb ... Unpacking debianutils (5.17) over (4.11.2) ... Setting up debianutils (5.17) ... update-alternatives: using /usr/bin/which.debianutils to provide /usr/bin/which (which) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20846 files and directories currently installed.) Preparing to unpack .../bash_5.2.21-2_amd64.deb ... Unpacking bash (5.2.21-2) over (5.1-2+deb11u1) ... Setting up bash (5.2.21-2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode Selecting previously unselected package libcap2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20847 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.66-5_amd64.deb ... Unpacking libcap2:amd64 (1:2.66-5) ... Setting up libcap2:amd64 (1:2.66-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20855 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.47-3_amd64.deb ... Unpacking libgpg-error0:amd64 (1.47-3) over (1.38-2) ... Setting up libgpg-error0:amd64 (1.47-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20855 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.10.3-2_amd64.deb ... Unpacking libgcrypt20:amd64 (1.10.3-2) over (1.8.7-6) ... Setting up libgcrypt20:amd64 (1.10.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20857 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.9.4-2_amd64.deb ... Unpacking liblz4-1:amd64 (1.9.4-2) over (1.9.3-2) ... Setting up liblz4-1:amd64 (1.9.4-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20857 files and directories currently installed.) Preparing to unpack .../libsystemd0_255.4-1+b1_amd64.deb ... Unpacking libsystemd0:amd64 (255.4-1+b1) over (247.3-7+deb11u4) ... Setting up libsystemd0:amd64 (255.4-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20859 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.40-6_amd64.deb ... Unpacking bsdutils (1:2.40-6) over (1:2.36.1-8+deb11u1) ... Setting up bsdutils (1:2.40-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20859 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-2+b1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.3.0+dfsg-2+b1) over (2:6.2.1+dfsg-1+deb11u1) ... Setting up libgmp10:amd64 (2:6.3.0+dfsg-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20860 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3.1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.3.dfsg-3.1) over (1:1.2.11.dfsg-2+deb11u2) ... Setting up zlib1g:amd64 (1:1.3.dfsg-3.1) ... Selecting previously unselected package libssl3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20860 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.2.1-3_amd64.deb ... Unpacking libssl3t64:amd64 (3.2.1-3) ... Setting up libssl3t64:amd64 (3.2.1-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20875 files and directories currently installed.) Preparing to unpack .../coreutils_9.4-3.1_amd64.deb ... Unpacking coreutils (9.4-3.1) over (8.32-4+b1) ... Setting up coreutils (9.4-3.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20879 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-6_amd64.deb ... Unpacking dash (0.5.12-6) over (0.5.11+git20200708+dd9ef66-5) ... Setting up dash (0.5.12-6) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20878 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.10-1_amd64.deb ... Unpacking diffutils (1:3.10-1) over (1:3.7-5) ... Setting up diffutils (1:3.10-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20880 files and directories currently installed.) Preparing to unpack .../findutils_4.9.0-5_amd64.deb ... Unpacking findutils (4.9.0-5) over (4.8.0-1) ... Setting up findutils (4.9.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20880 files and directories currently installed.) Preparing to unpack .../archives/grep_3.11-4_amd64.deb ... Unpacking grep (3.11-4) over (3.6-1+deb11u1) ... Setting up grep (3.11-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20882 files and directories currently installed.) Preparing to unpack .../gzip_1.12-1.1_amd64.deb ... Unpacking gzip (1.12-1.1) over (1.10-4+deb11u1) ... dpkg: warning: old file '/bin/uncompress' is the same as several new files! (both '/usr/bin/gunzip' and '/usr/bin/uncompress') dpkg: warning: old file '/bin/gunzip' is the same as several new files! (both '/usr/bin/gunzip' and '/usr/bin/uncompress') Setting up gzip (1.12-1.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20882 files and directories currently installed.) Preparing to unpack .../hostname_3.23+nmu2_amd64.deb ... Unpacking hostname (3.23+nmu2) over (3.23) ... Setting up hostname (3.23+nmu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20882 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.4+20240414-1_amd64.deb ... Unpacking libncursesw6:amd64 (6.4+20240414-1) over (6.2+20201114-2+deb11u2) ... Preparing to unpack .../libtinfo6_6.4+20240414-1_amd64.deb ... Unpacking libtinfo6:amd64 (6.4+20240414-1) over (6.2+20201114-2+deb11u2) ... Setting up libtinfo6:amd64 (6.4+20240414-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20880 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.4+20240414-1_amd64.deb ... Unpacking ncurses-bin (6.4+20240414-1) over (6.2+20201114-2+deb11u2) ... Setting up ncurses-bin (6.4+20240414-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20880 files and directories currently installed.) Preparing to unpack .../perl_5.38.2-3.2+b2_amd64.deb ... Unpacking perl (5.38.2-3.2+b2) over (5.32.1-4+deb11u3) ... Selecting previously unselected package perl-modules-5.38. Preparing to unpack .../perl-modules-5.38_5.38.2-3.2_all.deb ... Unpacking perl-modules-5.38 (5.38.2-3.2) ... dpkg: libdb5.3:amd64: dependency problems, but removing anyway as you requested: libpython3.9-stdlib:amd64 depends on libdb5.3. libperl5.32:amd64 depends on libdb5.3. libpam-modules:amd64 depends on libdb5.3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22294 files and directories currently installed.) Removing libdb5.3:amd64 (5.3.28+dfsg1-0.8) ... Selecting previously unselected package libdb5.3t64:amd64. (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22294 files and directories currently installed.) Removing libgdbm6:amd64 (1.19-2) ... Selecting previously unselected package libgdbm6t64:amd64. (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22296 files and directories currently installed.) Removing libgdbm-compat4:amd64 (1.19-2) ... Selecting previously unselected package libgdbm-compat4t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22290 files and directories currently installed.) Preparing to unpack .../libgdbm-compat4t64_1.23-5.1+b1_amd64.deb ... Unpacking libgdbm-compat4t64:amd64 (1.23-5.1+b1) ... Selecting previously unselected package libperl5.38t64:amd64. Preparing to unpack .../libperl5.38t64_5.38.2-3.2+b2_amd64.deb ... Unpacking libperl5.38t64:amd64 (5.38.2-3.2+b2) ... Preparing to unpack .../perl-base_5.38.2-3.2+b2_amd64.deb ... Unpacking perl-base (5.38.2-3.2+b2) over (5.32.1-4+deb11u3) ... Setting up perl-base (5.38.2-3.2+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22826 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a3.1.2-2.1_all.deb ... Unpacking libaudit-common (1:3.1.2-2.1) over (1:3.0-2) ... Setting up libaudit-common (1:3.1.2-2.1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22827 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.1.2-2.1_amd64.deb ... Unpacking libaudit1:amd64 (1:3.1.2-2.1) over (1:3.0-2) ... Setting up libaudit1:amd64 (1:3.1.2-2.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22827 files and directories currently installed.) Preparing to unpack .../debconf_1.5.86_all.deb ... Unpacking debconf (1.5.86) over (1.5.77) ... Setting up debconf (1.5.86) ... Installing new version of config file /etc/debconf.conf ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22824 files and directories currently installed.) Preparing to unpack .../libcrypt1_1%3a4.4.36-4_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.36-4) over (1:4.4.18-4) ... Setting up libcrypt1:amd64 (1:4.4.36-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22824 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.3-7_amd64.deb ... Unpacking libpam-modules-bin (1.5.3-7) over (1.4.0-9+deb11u1) ... Replacing files in old package libpam-modules:amd64 (1.4.0-9+deb11u1) ... Setting up libpam-modules-bin (1.5.3-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22828 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.3-7_amd64.deb ... Unpacking libpam-modules:amd64 (1.5.3-7) over (1.4.0-9+deb11u1) ... dpkg: warning: unable to delete old directory '/lib/x86_64-linux-gnu/security': Directory not empty Setting up libpam-modules:amd64 (1.5.3-7) ... Installing new version of config file /etc/security/limits.conf ... Installing new version of config file /etc/security/namespace.init ... Installing new version of config file /etc/security/sepermit.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22829 files and directories currently installed.) Preparing to unpack .../libbz2-1.0_1.0.8-5.1_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.8-5.1) over (1.0.8-4) ... Setting up libbz2-1.0:amd64 (1.0.8-5.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22829 files and directories currently installed.) Preparing to unpack .../archives/sed_4.9-2_amd64.deb ... Unpacking sed (4.9-2) over (4.7-1) ... Setting up sed (4.9-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22830 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.271+b3_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.271+b3) over (0.260) ... Setting up libdebconfclient0:amd64 (0.271+b3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22831 files and directories currently installed.) Preparing to unpack .../base-passwd_3.6.3_amd64.deb ... Unpacking base-passwd (3.6.3) over (3.5.51) ... Setting up base-passwd (3.6.3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22831 files and directories currently installed.) Preparing to unpack .../libstdc++6_14-20240330-1_amd64.deb ... Unpacking libstdc++6:amd64 (14-20240330-1) over (10.2.1-6) ... Setting up libstdc++6:amd64 (14-20240330-1) ... dpkg: libhogweed6:amd64: dependency problems, but removing anyway as you requested: libgnutls30:amd64 depends on libhogweed6 (>= 3.6). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22831 files and directories currently installed.) Removing libhogweed6:amd64 (3.7.3-1) ... dpkg: libnettle8:amd64: dependency problems, but removing anyway as you requested: libgnutls30:amd64 depends on libnettle8 (>= 3.7~). Removing libnettle8:amd64 (3.7.3-1) ... Selecting previously unselected package libnettle8t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22817 files and directories currently installed.) Preparing to unpack .../libnettle8t64_3.9.1-2.2_amd64.deb ... Unpacking libnettle8t64:amd64 (3.9.1-2.2) ... Setting up libnettle8t64:amd64 (3.9.1-2.2) ... Selecting previously unselected package libhogweed6t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22826 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.9.1-2.2_amd64.deb ... Unpacking libhogweed6t64:amd64 (3.9.1-2.2) ... Setting up libhogweed6t64:amd64 (3.9.1-2.2) ... Selecting previously unselected package libffi8:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22833 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.6-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.6-1) ... Setting up libffi8:amd64 (3.4.6-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22838 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.25.3-4_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.3-4) over (0.23.22-1) ... Setting up libp11-kit0:amd64 (0.25.3-4) ... Selecting previously unselected package libunistring5:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22838 files and directories currently installed.) Preparing to unpack .../libunistring5_1.2-1_amd64.deb ... Unpacking libunistring5:amd64 (1.2-1) ... Setting up libunistring5:amd64 (1.2-1) ... dpkg: libgnutls30:amd64: dependency problems, but removing anyway as you requested: apt depends on libgnutls30 (>= 3.7.0). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22844 files and directories currently installed.) Removing libgnutls30:amd64 (3.7.1-5+deb11u4) ... Selecting previously unselected package libgnutls30t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22817 files and directories currently installed.) Preparing to unpack .../libgnutls30t64_3.8.5-2_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.5-2) ... Setting up libgnutls30t64:amd64 (3.8.5-2) ... dpkg: libapt-pkg6.0:amd64: dependency problems, but removing anyway as you requested: apt depends on libapt-pkg6.0 (>= 2.2.4). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22846 files and directories currently installed.) Removing libapt-pkg6.0:amd64 (2.2.4) ... Selecting previously unselected package libapt-pkg6.0t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22797 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.9.2_amd64.deb ... Unpacking libapt-pkg6.0t64:amd64 (2.9.2) ... Setting up libapt-pkg6.0t64:amd64 (2.9.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22847 files and directories currently installed.) Preparing to unpack .../libudev1_255.4-1+b1_amd64.deb ... Unpacking libudev1:amd64 (255.4-1+b1) over (247.3-7+deb11u4) ... Setting up libudev1:amd64 (255.4-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22849 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.2-2+b1_amd64.deb ... Unpacking libxxhash0:amd64 (0.8.2-2+b1) over (0.8.0-2) ... Setting up libxxhash0:amd64 (0.8.2-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22850 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.7-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.7-2) over (2.3.0-5) ... Setting up libidn2-0:amd64 (2.3.7-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22852 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.19.0-3+b2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.19.0-3+b2) over (4.16.0-2+deb11u1) ... Setting up libtasn1-6:amd64 (4.19.0-3+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22853 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.5-1_all.deb ... Unpacking libsemanage-common (3.5-1) over (3.1-1) ... Setting up libsemanage-common (3.5-1) ... Installing new version of config file /etc/selinux/semanage.conf ... Selecting previously unselected package libsepol2:amd64. (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22857 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.5-1+b3_amd64.deb ... Unpacking libsemanage2:amd64 (3.5-1+b3) ... Setting up libsemanage2:amd64 (3.5-1+b3) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22853 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2023.4_all.deb ... Unpacking debian-archive-keyring (2023.4) over (2021.1.1+deb11u1) ... Setting up debian-archive-keyring (2023.4) ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-automatic.gpg ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22853 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.5-1_amd64.deb ... Unpacking libseccomp2:amd64 (2.5.5-1) over (2.5.1-1+deb11u1) ... Setting up libseccomp2:amd64 (2.5.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22853 files and directories currently installed.) Preparing to unpack .../archives/apt_2.9.2_amd64.deb ... Unpacking apt (2.9.2) over (2.2.4) ... Setting up apt (2.9.2) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt-compat ... Removing obsolete conffile /etc/kernel/postinst.d/apt-auto-removal ... Selecting previously unselected package libnumber-compare-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22846 files and directories currently installed.) Preparing to unpack .../libnumber-compare-perl_0.03-3_all.deb ... Unpacking libnumber-compare-perl (0.03-3) ... Setting up libnumber-compare-perl (0.03-3) ... Selecting previously unselected package libtext-glob-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22853 files and directories currently installed.) Preparing to unpack .../libtext-glob-perl_0.11-3_all.deb ... Unpacking libtext-glob-perl (0.11-3) ... Setting up libtext-glob-perl (0.11-3) ... Selecting previously unselected package libfile-find-rule-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22860 files and directories currently installed.) Preparing to unpack .../libfile-find-rule-perl_0.34-3_all.deb ... Unpacking libfile-find-rule-perl (0.34-3) ... Setting up perl-modules-5.38 (5.38.2-3.2) ... Setting up libgdbm6t64:amd64 (1.23-5.1+b1) ... Setting up libgdbm-compat4t64:amd64 (1.23-5.1+b1) ... Setting up libperl5.38t64:amd64 (5.38.2-3.2+b2) ... Setting up perl (5.38.2-3.2+b2) ... Setting up libfile-find-rule-perl (0.34-3) ... Selecting previously unselected package usrmerge. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22875 files and directories currently installed.) Preparing to unpack .../archives/usrmerge_39_all.deb ... Unpacking usrmerge (39) ... Setting up usrmerge (39) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22882 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.4+20240414-1_all.deb ... Unpacking ncurses-base (6.4+20240414-1) over (6.2+20201114-2+deb11u2) ... Setting up ncurses-base (6.4+20240414-1) ... (Reading database ... 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Preparing to unpack .../python3-cvxopt_1.3.0+dfsg-1+b5_amd64.deb ... Unpacking python3-cvxopt (1.3.0+dfsg-1+b5) over (1.2.5+dfsg-3+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22893 files and directories currently installed.) Removing libdsdp-5.8gf (5.8-9.4) ... Selecting previously unselected package libdsdp-5.8t64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22889 files and directories currently installed.) Preparing to unpack .../0-libdsdp-5.8t64_5.8-10.1_amd64.deb ... Unpacking libdsdp-5.8t64 (5.8-10.1) ... Preparing to unpack .../1-libnl-route-3-200_3.7.0-0.3_amd64.deb ... Unpacking libnl-route-3-200:amd64 (3.7.0-0.3) over (3.4.0-1+b1) ... Preparing to unpack .../2-libnl-3-200_3.7.0-0.3_amd64.deb ... Unpacking libnl-3-200:amd64 (3.7.0-0.3) over (3.4.0-1+b1) ... Preparing to unpack .../3-ibverbs-providers_50.0-2+b1_amd64.deb ... Unpacking ibverbs-providers:amd64 (50.0-2+b1) over (33.2-1) ... Preparing to unpack .../4-libibverbs1_50.0-2+b1_amd64.deb ... Unpacking libibverbs1:amd64 (50.0-2+b1) over (33.2-1) ... Preparing to unpack .../5-libmd0_1.1.0-2_amd64.deb ... Unpacking libmd0:amd64 (1.1.0-2) over (1.0.3-3) ... Setting up libmd0:amd64 (1.1.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22900 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.12.2-1_amd64.deb ... Unpacking libbsd0:amd64 (0.12.2-1) over (0.11.3-1+deb11u1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../01-libedit2_3.1-20230828-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20230828-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../02-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Preparing to unpack .../03-libxml2_2.9.14+dfsg-1.3+b2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3+b2) over (2.9.10+dfsg-6.7+deb11u4) ... Selecting previously unselected package libz3-4:amd64. Preparing to unpack .../04-libz3-4_4.8.12-3.1+b2_amd64.deb ... Unpacking libz3-4:amd64 (4.8.12-3.1+b2) ... Selecting previously unselected package libllvm17t64:amd64. Preparing to unpack .../05-libllvm17t64_1%3a17.0.6-9+b2_amd64.deb ... Unpacking libllvm17t64:amd64 (1:17.0.6-9+b2) ... Selecting previously unselected package libamd-comgr2:amd64. Preparing to unpack .../06-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3+b1_amd64.deb ... Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b1) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../07-libdrm-common_2.4.120-2_all.deb ... Unpacking libdrm-common (2.4.120-2) ... Selecting previously unselected package libdrm2:amd64. Preparing to unpack .../08-libdrm2_2.4.120-2_amd64.deb ... Unpacking libdrm2:amd64 (2.4.120-2) ... Selecting previously unselected package libdrm-amdgpu1:amd64. Preparing to unpack .../09-libdrm-amdgpu1_2.4.120-2_amd64.deb ... Unpacking libdrm-amdgpu1:amd64 (2.4.120-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../10-libelf1t64_0.191-1+b1_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-1+b1) ... Preparing to unpack .../11-libnuma1_2.0.18-1_amd64.deb ... Unpacking libnuma1:amd64 (2.0.18-1) over (2.0.12-1+b1) ... Selecting previously unselected package libhsakmt1:amd64. Preparing to unpack .../12-libhsakmt1_5.7.0-1_amd64.deb ... Unpacking libhsakmt1:amd64 (5.7.0-1) ... Selecting previously unselected package libhsa-runtime64-1. Preparing to unpack .../13-libhsa-runtime64-1_5.7.1-2_amd64.deb ... Unpacking libhsa-runtime64-1 (5.7.1-2) ... Selecting previously unselected package libamdhip64-5. Preparing to unpack .../14-libamdhip64-5_5.7.1-3_amd64.deb ... Unpacking libamdhip64-5 (5.7.1-3) ... Selecting previously unselected package libatomic1:amd64. Preparing to unpack .../15-libatomic1_14-20240330-1_amd64.deb ... Unpacking libatomic1:amd64 (14-20240330-1) ... Preparing to unpack .../16-libpsm-infinipath1_3.3+20.604758e7-6.3_amd64.deb ... Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.3) over (3.3+20.604758e7-6.1) ... Preparing to unpack .../17-libpsm2-2_11.2.185-2_amd64.deb ... Unpacking libpsm2-2 (11.2.185-2) over (11.2.185-1) ... Preparing to unpack .../18-libfabric1_1.17.0-3+b1_amd64.deb ... Unpacking libfabric1:amd64 (1.17.0-3+b1) over (1.11.0-2) ... dpkg: librdmacm1:amd64: dependency problems, but removing anyway as you requested: libucx0:amd64 depends on librdmacm1 (>= 23). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22994 files and directories currently installed.) Removing librdmacm1:amd64 (33.2-1) ... Selecting previously unselected package librdmacm1t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22984 files and directories currently installed.) Preparing to unpack .../librdmacm1t64_50.0-2+b1_amd64.deb ... Unpacking librdmacm1t64:amd64 (50.0-2+b1) ... Preparing to unpack .../libucx0_1.16.0+ds-5_amd64.deb ... Unpacking libucx0:amd64 (1.16.0+ds-5) over (1.10.1~rc1+really.1.10.0-1) ... dpkg: libopenmpi3:amd64: dependency problems, but removing anyway as you requested: iqtree depends on libopenmpi3 (>= 4.0.2). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23001 files and directories currently installed.) Removing libopenmpi3:amd64 (4.1.0-10) ... Selecting previously unselected package libopenmpi3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22833 files and directories currently installed.) Preparing to unpack .../libopenmpi3t64_4.1.6-12_amd64.deb ... Unpacking libopenmpi3t64:amd64 (4.1.6-12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23002 files and directories currently installed.) Removing libpmix2:amd64 (4.0.0-4.1+deb11u1) ... Removing libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1) ... Removing libevent-core-2.1-7:amd64 (2.1.12-stable-1) ... Selecting previously unselected package libevent-core-2.1-7t64:amd64. (Reading database ... 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Preparing to unpack .../02-libpciaccess0_0.17-3_amd64.deb ... Unpacking libpciaccess0:amd64 (0.17-3) over (0.16-1) ... Preparing to unpack .../03-libx11-data_2%3a1.8.7-1_all.deb ... Unpacking libx11-data (2:1.8.7-1) over (2:1.7.2-1+deb11u2) ... Preparing to unpack .../04-libxcb1_1.17.0-1_amd64.deb ... Unpacking libxcb1:amd64 (1.17.0-1) over (1.14-3) ... Preparing to unpack .../05-libx11-6_2%3a1.8.7-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.7-1) over (2:1.7.2-1+deb11u2) ... Preparing to unpack .../06-libxext6_2%3a1.3.4-1+b1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b1) over (2:1.3.3-1.1) ... Preparing to unpack .../07-libxnvctrl0_535.171.04-1_amd64.deb ... Unpacking libxnvctrl0:amd64 (535.171.04-1) over (470.141.03-1~deb11u1) ... Preparing to unpack .../08-ocl-icd-libopencl1_2.3.2-1+b1_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1+b1) over (2.2.14-2) ... Preparing to unpack .../09-libhwloc15_2.10.0-1+b1_amd64.deb ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:amd64 (1.47.0-2.4) ... Setting up libext2fs2t64:amd64 (1.47.0-2.4) ... (Reading database ... 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Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24702 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) over (3.9.2-3) ... Setting up python3-minimal (3.11.8-1) ... (Reading database ... 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(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 27036 files and directories currently installed.) Removing libreadline8:amd64 (8.1-1) ... Selecting previously unselected package libreadline8t64:amd64. (Reading database ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Preparing to unpack .../01-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) over (8.1-1) ... Preparing to unpack .../02-libsqlite3-0_3.45.3-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.45.3-1) over (3.34.1-3) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../03-libpython3.11-stdlib_3.11.9-1_amd64.deb ... 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Setting up libhsakmt1:amd64 (5.7.0-1) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up libfabric1:amd64 (1.17.0-3+b1) ... Setting up python3.11 (3.11.9-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3 (3.11.8-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-freetype (2.4.0-1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-isodate (0.6.1-2) ... Setting up python3-pil:amd64 (10.3.0-2) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-pygtrie (2.2-2) ... Setting up python3-packaging (24.0-1) ... Setting up python3-wcwidth (0.2.13+dfsg1-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2023.11.17-1) ... Setting up python3-typeshed (0.0~git20231111.6764465-3) ... Setting up python3-jmespath (1.0.1-1) ... Setting up python3-brotli (1.1.0-2+b3) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.5-1) ... Setting up python3-idna (3.6-2) ... Setting up python3-typing-extensions (4.10.0-1) ... Setting up python3-pickleshare (0.7.5-5) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-urllib3 (1.26.18-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-rpds-py (0.12.0-3) ... Setting up python3-pyrsistent:amd64 (0.20.0-1+b1) ... Setting up python3-trove-classifiers (2024.1.31-1) ... Setting up python3-lxml:amd64 (5.2.1-1) ... Setting up libhsa-runtime64-1 (5.7.1-2) ... Setting up python3-traitlets (5.14.2-2) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-pathspec (0.12.1-1) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-cffi-backend:amd64 (1.16.0-2+b1) ... Setting up python3-ptyprocess (0.7.0-5) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-prompt-toolkit (3.0.43-1) ... Setting up python3-distutils (3.12.3-1) ... Setting up python3-more-itertools (10.2.0-1) ... Setting up python3-schedule (1.2.1-0.1) ... Setting up python3-sympy (1.12-7) ... Setting up python3-attr (23.2.0-2) ... Setting up python3-pure-eval (0.2.2-1) ... Setting up python3-cairo (1.26.0-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-backcall (0.2.0-4) ... Setting up python3-parso (0.8.3-1) ... Setting up python3-cvxopt (1.3.0+dfsg-1+b5) ... Setting up python3-lz4 (4.0.2+dfsg-1+b3) ... Setting up python3-ipython-genutils (0.2.0-6) ... Setting up python3-asttokens (2.4.1-1) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-unicodedata2 (15.1.0+ds-1+b1) ... Setting up python3-tk:amd64 (3.12.3-1) ... Setting up python3-zipp (1.0.0-6) ... Setting up python3-networkx (2.8.8-2) ... Setting up python3-setuptools-scm (8.0.4-2) ... Setting up python3-matplotlib-inline (0.1.6-2) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-pygments (2.17.2+dfsg-1) ... Setting up python3-xopen (1.7.0-2) ... Setting up python3-zstandard (0.22.0-1+b1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up libamdhip64-5 (5.7.1-3) ... Setting up python3-pil.imagetk:amd64 (10.3.0-2) ... Setting up python3-executing (2.0.1-0.1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-pexpect (4.9-2) ... Setting up python3-requests (2.31.0+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-6) ... Setting up python3-reportlab (4.2.0-1) ... Setting up python3-contourpy (1.0.7-3) ... Setting up python3-hatchling (1.24.2-1) ... Setting up python3-dendropy (4.6.1-1) ... Setting up python3-stack-data (0.6.3-1) ... Setting up python3-hatch-vcs (0.4.0-1) ... Setting up python3-referencing (0.31.0-1) ... Setting up python3-boto (2.49.0-4.1) ... Setting up libucx0:amd64 (1.16.0+ds-5) ... Setting up python3-scipy (1.11.4-6) ... Setting up python3-importlib-metadata (4.12.0-1) ... Setting up python3-jedi (0.19.1+ds1-1) ... Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-7) ... Setting up python3-pandas (2.1.4+dfsg-7) ... Setting up python3-ipython (8.20.0-1) ... Setting up python3-botocore (1.34.46+repack-1) ... Setting up libopenmpi3t64:amd64 (4.1.6-12) ... Setting up ipython3 (8.20.0-1) ... Setting up python3-ipdb (0.13.13-1) ... Setting up python3-jsonschema-specifications (2023.12.1-1) ... Setting up python3-pyfaidx (0.8.1.1-1) ... Setting up python3-s3transfer (0.10.1-1) ... Setting up python3-pyfastx (2.1.0-1) ... Setting up iqtree (2.0.7+dfsg-1+b1) ... Setting up python3-jsonschema (4.19.2-2) ... Setting up python3-boto3 (1.34.46+dfsg-1) ... Setting up python3-fonttools (4.46.0-1) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-matplotlib (3.6.3-2) ... Setting up python3-seaborn (0.13.2-3) ... Processing triggers for debianutils (5.17) ... Processing triggers for libc-bin (2.37-18) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.83+dfsg1-2) ... Setting up python3-treetime (0.11.1-1) ... Setting up seqmagick (0.8.6-2) ... Setting up python3-bcbio-gff (0.7.1-1) ... Setting up augur (24.3.0-1) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 3m36.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-get', '-yf', 'dist-upgrade'] 3m36.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 3m37.6s DUMP: 5e5ffeed94e287a1c014496e3a7dba00 - 3m37.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 3m37.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-cache', 'show', '--no-all-versions', 'augur'] 3m38.0s DUMP: Package: augur Version: 24.3.0-1 Installed-Size: 930 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-bcbio-gff, python3-biopython, python3-cvxopt, python3-importlib-resources | python3-supported-min (>= 3.11), python3-isodate, python3-jsonschema, python3-networkx, python3-numpy, python3-packaging, python3-pandas, python3-pyfastx, python3-scipy, python3-treetime (>= 0.9.4), python3-xopen (>= 1.7.0-1~), python3:any, python3-boto3, python3-dendropy, python3-matplotlib, python3-schedule, python3-seaborn, python3-zstandard, seqmagick, python3-ipdb, mafft, raxml, fasttree, vcftools Recommends: iqtree Description-en: pipeline components for real-time virus analysis The nextstrain project is an attempt to make flexible informatic pipelines and visualization tools to track ongoing pathogen evolution as sequence data emerges. The nextstrain project derives from nextflu, which was specific to influenza evolution. . nextstrain is comprised of three components: . * fauna: database and IO scripts for sequence and serological data * augur: informatic pipelines to conduct inferences from raw data * auspice: web app to visualize resulting inferences Description-md5: e2aaa44840d7b632d0e95700bc100196 Homepage: https://github.com/nextstrain/augur Section: science Priority: optional Filename: pool/main/a/augur/augur_24.3.0-1_all.deb Size: 216432 MD5sum: b855b027e8c746cced69cbae40f0d18d SHA256: 093c5ffa521244b966b09d0cdb2db1418fc04ce68890fa9582082d3cfdad7c64 3m38.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-cache', 'show', '--no-all-versions', 'augur'] 3m38.0s INFO: apt-cache knows about the following packages: augur 3m38.0s INFO: Running scripts pre_install 3m38.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_database-server'] 3m38.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_database-server'] 3m38.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_exceptions'] 3m38.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_exceptions'] 3m38.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_extras'] 3m38.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_extras'] 3m38.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_foreign_architecture'] 3m38.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_foreign_architecture'] 3m38.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m38.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m38.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-cache', 'policy'] 3m38.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 3m38.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-cache', 'policy'] 3m38.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-cache', 'policy', 'augur'] 3m38.1s DUMP: augur: Installed: 24.3.0-1 Candidate: 24.3.0-1 Version table: *** 24.3.0-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 3m38.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-cache', 'policy', 'augur'] 3m38.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-get', '-y', 'install', 'augur'] 3m38.9s DUMP: Reading package lists... Building dependency tree... Reading state information... augur is already the newest version (24.3.0-1). The following packages were automatically installed and are no longer required: libamd2 libcamd2 libccolamd2 libcholmod3 libcolamd2 libicu67 libmetis5 libmpdec3 libperl5.32 libpython3.9-minimal libpython3.9-stdlib libquadmath0 libsuitesparseconfig5 libtiff5 libumfpack5 libwebp6 perl-modules-5.32 python3-backcall python3-boto python3-ipython-genutils python3-pickleshare python3-pyrsistent python3.9 python3.9-minimal ucf Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3m38.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-get', '-y', 'install', 'augur'] 3m38.9s INFO: Running scripts post_install 3m38.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_install_exceptions'] 3m38.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_install_exceptions'] 3m38.9s INFO: Running scripts post_distupgrade 3m38.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_distupgrade_base_cleanup'] 3m38.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_distupgrade_base_cleanup'] 3m38.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_distupgrade_exceptions'] 3m38.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_distupgrade_exceptions'] 3m38.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 3m38.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 3m38.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_distupgrade_squeeze-backports'] 3m38.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_distupgrade_squeeze-backports'] 3m38.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_distupgrade_zz_backports'] 3m38.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_distupgrade_zz_backports'] 3m38.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg'] 3m41.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg'] 3m41.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg'] 3m44.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg'] 3m44.2s INFO: Running scripts pre_install 3m44.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_database-server'] 3m44.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_database-server'] 3m44.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_exceptions'] 3m44.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_exceptions'] 3m44.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_extras'] 3m44.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_extras'] 3m44.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_foreign_architecture'] 3m44.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_foreign_architecture'] 3m44.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m44.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m44.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-cache', 'policy'] 3m44.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 3m44.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-cache', 'policy'] 3m44.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-cache', 'policy', 'augur'] 3m44.3s DUMP: augur: Installed: 24.3.0-1 Candidate: 24.3.0-1 Version table: *** 24.3.0-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 3m44.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-cache', 'policy', 'augur'] 3m44.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-get', '-y', 'install', 'augur=24.3.0-1'] 3m45.2s DUMP: Reading package lists... Building dependency tree... Reading state information... augur is already the newest version (24.3.0-1). The following packages were automatically installed and are no longer required: libamd2 libcamd2 libccolamd2 libcholmod3 libcolamd2 libicu67 libmetis5 libmpdec3 libperl5.32 libpython3.9-minimal libpython3.9-stdlib libquadmath0 libsuitesparseconfig5 libtiff5 libumfpack5 libwebp6 perl-modules-5.32 python3-backcall python3-boto python3-ipython-genutils python3-pickleshare python3-pyrsistent python3.9 python3.9-minimal ucf Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3m45.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-get', '-y', 'install', 'augur=24.3.0-1'] 3m45.2s INFO: Running scripts post_install 3m45.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_install_exceptions'] 3m45.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_install_exceptions'] 3m45.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg'] 3m47.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg'] 3m48.0s INFO: /bin converted to /usr/bin by /usr merge 3m48.0s INFO: /lib converted to /usr/lib by /usr merge 3m48.0s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 3m48.0s INFO: /lib64 converted to /usr/lib64 by /usr merge 3m48.0s INFO: /sbin converted to /usr/sbin by /usr merge 3m50.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', '-ac', '--ignore-obsolete'] 3m56.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', '-ac', '--ignore-obsolete'] 3m56.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 3m56.2s DUMP: 0.15.6 3m56.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 3m56.2s INFO: Running adequate version 0.15.6 now. 3m56.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'augur'] 3m56.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'augur'] 3m56.4s INFO: Running scripts pre_remove 3m56.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 3m56.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 3m56.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 3m56.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 3m56.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 4m4.8s DUMP: UNOWNED SYMLINK /usr/lib/x86_64-linux-gnu/libmpi_usempi_ignore_tkr-gfortranso.40 -> libmpi_usempi_ignore_tkr-gfortran.so.40.30.0 4m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 4m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 4m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 4m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 4m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 4m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_remove_exceptions'] 4m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/pre_remove_exceptions'] 4m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 4m5.4s DUMP: install ok installed adduser adduser 3.137 install ok installed apt apt 2.9.2 install ok installed augur augur 24.3.0-1 install ok installed base-files base-files 13.1 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed blt blt 2.5.3+dfsg-7 install ok installed bsdutils bsdutils 1:2.40-6 install ok installed ca-certificates ca-certificates 20240203 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.17 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.6 install ok installed e2fsprogs e2fsprogs 1.47.0-2.4 install ok installed fasttree fasttree 2.1.11-2 install ok installed findutils findutils 4.9.0-5 install ok installed fontconfig-config fontconfig-config 2.15.0-1.1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-lyx fonts-lyx 2.4.0~RC4-1 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-8 install ok installed gcc-10-base:amd64 gcc-10-base 10.5.0-4 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240330-1 install ok installed gcc-9-base:amd64 gcc-9-base 9.5.0-6 install ok installed gpgv gpgv 2.2.40-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed ibverbs-providers:amd64 ibverbs-providers 50.0-2+b1 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed ipython3 ipython3 8.20.0-1 install ok installed iqtree iqtree 2.0.7+dfsg-1+b1 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libamd-comgr2:amd64 libamd-comgr2 6.0+git20231212.4510c28+dfsg-3+b1 install ok installed libamd2:amd64 libamd2 1:5.8.1+dfsg-2 install ok installed libamd3:amd64 libamd3 1:7.7.0+dfsg-2 install ok installed libamdhip64-5 libamdhip64-5 5.7.1-3 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.2 install ok installed libatomic1:amd64 libatomic1 14-20240330-1 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libblas3:amd64 libblas3 3.12.0-3 install ok installed libblkid1:amd64 libblkid1 2.40-6 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b3 install ok installed libbsd0:amd64 libbsd0 0.12.2-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.37-18 install ok installed libc6:amd64 libc6 2.37-18 install ok installed libcairo2:amd64 libcairo2 1.18.0-3+b1 install ok installed libcamd2:amd64 libcamd2 1:5.8.1+dfsg-2 install ok installed libcamd3:amd64 libcamd3 1:7.7.0+dfsg-2 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-1 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libccolamd2:amd64 libccolamd2 1:5.8.1+dfsg-2 install ok installed libccolamd3:amd64 libccolamd3 1:7.7.0+dfsg-2 install ok installed libcholmod3:amd64 libcholmod3 1:5.8.1+dfsg-2 install ok installed libcholmod5:amd64 libcholmod5 1:7.7.0+dfsg-2 install ok installed libcolamd2:amd64 libcolamd2 1:5.8.1+dfsg-2 install ok installed libcolamd3:amd64 libcolamd3 1:7.7.0+dfsg-2 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2.4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b3 install ok installed libdeflate0:amd64 libdeflate0 1.20-1 install ok installed libdrm-amdgpu1:amd64 libdrm-amdgpu1 2.4.120-2 install ok installed libdrm-common libdrm-common 2.4.120-2 install ok installed libdrm2:amd64 libdrm2 2.4.120-2 install ok installed libdsdp-5.8t64 libdsdp-5.8t64 5.8-10.1 install ok installed libedit2:amd64 libedit2 3.1-20230828-1 install ok installed libelf1t64:amd64 libelf1t64 0.191-1+b1 install ok installed libevent-core-2.1-7t64:amd64 libevent-core-2.1-7t64 2.1.12-stable-8.1+b3 install ok installed libevent-pthreads-2.1-7t64:amd64 libevent-pthreads-2.1-7t64 2.1.12-stable-8.1+b3 install ok installed libexpat1:amd64 libexpat1 2.6.2-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.0-2.4 install ok installed libfabric1:amd64 libfabric1 1.17.0-3+b1 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libfftw3-double3:amd64 libfftw3-double3 3.3.10-1+b2 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-1.1 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.8-1 install ok installed libfreetype6:amd64 libfreetype6 2.13.2+dfsg-1+b4 install ok installed libfribidi0:amd64 libfribidi0 1.0.13-3+b1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240330-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.23-5.1+b1 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.23-5.1+b1 install ok installed libgfortran5:amd64 libgfortran5 14-20240330-1 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.78.4-7 install ok installed libglpk40:amd64 libglpk40 5.0-1+b1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.5-2 install ok installed libgomp1:amd64 libgomp1 14-20240330-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2 install ok installed libgsl27:amd64 libgsl27 2.7.1+dfsg-6+b1 install ok installed libgslcblas0:amd64 libgslcblas0 2.7.1+dfsg-6+b1 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-6+b1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 8.3.0-2+b1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.9.1-2.2 install ok installed libhsa-runtime64-1 libhsa-runtime64-1 5.7.1-2 install ok installed libhsakmt1:amd64 libhsakmt1 5.7.0-1 install ok installed libhwloc-plugins:amd64 libhwloc-plugins 2.10.0-1+b1 install ok installed libhwloc15:amd64 libhwloc15 2.10.0-1+b1 install ok installed libibverbs1:amd64 libibverbs1 50.0-2+b1 install ok installed libicu67:amd64 libicu67 67.1-7 install ok installed libicu72:amd64 libicu72 72.1-4+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libimagequant0:amd64 libimagequant0 2.18.0-1 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-2+b2 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-6+b1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-6+b1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-6+b1 install ok installed liblapack3:amd64 liblapack3 3.12.0-3 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1+b1 install ok installed liblcms2-2:amd64 liblcms2-2 2.14-2+b1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-4+b1 install ok installed libllvm17t64:amd64 libllvm17t64 1:17.0.6-9+b2 install ok installed libltdl7:amd64 libltdl7 2.4.7-7 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-2 install ok installed liblzma5:amd64 liblzma5 5.6.1+really5.4.5-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmetis5:amd64 libmetis5 5.1.0.dfsg-7+b1 install ok installed libmount1:amd64 libmount1 2.40-6 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-1 install ok installed libmunge2:amd64 libmunge2 0.5.15-4 install ok installed libncursesw6:amd64 libncursesw6 6.4+20240414-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.9.1-2.2 install ok installed libnl-3-200:amd64 libnl-3-200 3.7.0-0.3 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.7.0-0.3 install ok installed libnsl2:amd64 libnsl2 1.3.0-3+b2 install ok installed libnuma1:amd64 libnuma1 2.0.18-1 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2+b3 install ok installed libopenmpi3t64:amd64 libopenmpi3t64 4.1.6-12 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpciaccess0:amd64 libpciaccess0 0.17-3 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libpcre3:amd64 libpcre3 2:8.39-15+b1 install ok installed libperl5.32:amd64 libperl5.32 5.32.1-4+deb11u3 install ok installed libperl5.38t64:amd64 libperl5.38t64 5.38.2-3.2+b2 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.42.2-1+b1 install ok installed libpmix2t64:amd64 libpmix2t64 5.0.2-3 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.43-5 install ok installed libpsm-infinipath1 libpsm-infinipath1 3.3+20.604758e7-6.3 install ok installed libpsm2-2 libpsm2-2 11.2.185-2 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.8-1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.9-1 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.9-1 install ok installed libpython3.9-minimal:amd64 libpython3.9-minimal 3.9.2-1 install ok installed libpython3.9-stdlib:amd64 libpython3.9-stdlib 3.9.2-1 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-6+b1 install ok installed libquadmath0:amd64 libquadmath0 14-20240330-1 install ok installed libraqm0:amd64 libraqm0 0.10.1-1+b1 install ok installed librdmacm1t64:amd64 librdmacm1t64 50.0-2+b1 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-4 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b3 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.3.2-0.4+b1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40-6 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.45.3-1 install ok installed libss2:amd64 libss2 1.47.0-2.4 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libssl3t64:amd64 libssl3t64 3.2.1-3 install ok installed libstdc++6:amd64 libstdc++6 14-20240330-1 install ok installed libsuitesparseconfig5:amd64 libsuitesparseconfig5 1:5.8.1+dfsg-2 install ok installed libsuitesparseconfig7:amd64 libsuitesparseconfig7 1:7.7.0+dfsg-2 install ok installed libsystemd0:amd64 libsystemd0 255.4-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.14+dfsg-1 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtiff5:amd64 libtiff5 4.2.0-1+deb11u5 install ok installed libtiff6:amd64 libtiff6 4.5.1+git230720-4 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240414-1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1.3 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.4+ds-1.3 install ok installed libtk8.6:amd64 libtk8.6 8.6.14-1 install ok installed libucx0:amd64 libucx0 1.16.0+ds-5 install ok installed libudev1:amd64 libudev1 255.4-1+b1 install ok installed libumfpack5:amd64 libumfpack5 1:5.8.1+dfsg-2 install ok installed libumfpack6:amd64 libumfpack6 1:7.7.0+dfsg-2 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40-6 install ok installed libwebp6:amd64 libwebp6 0.6.1-2.1+deb11u2 install ok installed libwebp7:amd64 libwebp7 1.3.2-0.4+b1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.3.2-0.4+b1 install ok installed libwebpmux3:amd64 libwebpmux3 1.3.2-0.4+b1 install ok installed libx11-6:amd64 libx11-6 2:1.8.7-1 install ok installed libx11-data libx11-data 2:1.8.7-1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-1 install ok installed libxcb1:amd64 libxcb1 1.17.0-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxft2:amd64 libxft2 2.3.6-1+b1 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3+b2 install ok installed libxnvctrl0:amd64 libxnvctrl0 535.171.04-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libz3-4:amd64 libz3-4 4.8.12-3.1+b2 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2.4 install ok installed lsb-base lsb-base 11.6 install ok installed mafft mafft 7.505-1 install ok installed mailcap mailcap 3.70+nmu1 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed media-types media-types 10.1.0 install ok installed mime-support mime-support 3.66 install ok installed mount mount 2.40-6 install ok installed ncurses-base ncurses-base 6.4+20240414-1 install ok installed ncurses-bin ncurses-bin 6.4+20240414-1 install ok installed netbase netbase 6.4 install ok installed ocl-icd-libopencl1:amd64 ocl-icd-libopencl1 2.3.2-1+b1 install ok installed openssl openssl 3.2.1-3 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl perl 5.38.2-3.2+b2 install ok installed perl-base perl-base 5.38.2-3.2+b2 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-4+deb11u3 install ok installed perl-modules-5.38 perl-modules-5.38 5.38.2-3.2 install ok installed pigz pigz 2.8-1 install ok installed python-matplotlib-data python-matplotlib-data 3.6.3-2 install ok installed python3 python3 3.11.8-1 install ok installed python3-appdirs python3-appdirs 1.4.4-4 install ok installed python3-asttokens python3-asttokens 2.4.1-1 install ok installed python3-attr python3-attr 23.2.0-2 install ok installed python3-backcall python3-backcall 0.2.0-4 install ok installed python3-bcbio-gff python3-bcbio-gff 0.7.1-1 install ok installed python3-biopython python3-biopython 1.83+dfsg1-2 install ok installed python3-boto python3-boto 2.49.0-4.1 install ok installed python3-boto3 python3-boto3 1.34.46+dfsg-1 install ok installed python3-botocore python3-botocore 1.34.46+repack-1 install ok installed python3-brotli python3-brotli 1.1.0-2+b3 install ok installed python3-cairo python3-cairo 1.26.0-1 install ok installed python3-certifi python3-certifi 2023.11.17-1 install ok installed python3-cffi-backend:amd64 python3-cffi-backend 1.16.0-2+b1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-1 install ok installed python3-charset-normalizer python3-charset-normalizer 3.3.2-1 install ok installed python3-contourpy python3-contourpy 1.0.7-3 install ok installed python3-cvxopt python3-cvxopt 1.3.0+dfsg-1+b5 install ok installed python3-cycler python3-cycler 0.12.1-1 install ok installed python3-dateutil python3-dateutil 2.9.0-2 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-dendropy python3-dendropy 4.6.1-1 install ok installed python3-distutils python3-distutils 3.12.3-1 install ok installed python3-executing python3-executing 2.0.1-0.1 install ok installed python3-fonttools python3-fonttools 4.46.0-1 install ok installed python3-freetype python3-freetype 2.4.0-1 install ok installed python3-fs python3-fs 2.4.16-4 install ok installed python3-hatch-vcs python3-hatch-vcs 0.4.0-1 install ok installed python3-hatchling python3-hatchling 1.24.2-1 install ok installed python3-idna python3-idna 3.6-2 install ok installed python3-importlib-metadata python3-importlib-metadata 4.12.0-1 install ok installed python3-ipdb python3-ipdb 0.13.13-1 install ok installed python3-ipython python3-ipython 8.20.0-1 install ok installed python3-ipython-genutils python3-ipython-genutils 0.2.0-6 install ok installed python3-isodate python3-isodate 0.6.1-2 install ok installed python3-jedi python3-jedi 0.19.1+ds1-1 install ok installed python3-jmespath python3-jmespath 1.0.1-1 install ok installed python3-jsonschema python3-jsonschema 4.19.2-2 install ok installed python3-jsonschema-specifications python3-jsonschema-specifications 2023.12.1-1 install ok installed python3-kiwisolver python3-kiwisolver 1.4.5-1 install ok installed python3-lib2to3 python3-lib2to3 3.12.3-1 install ok installed python3-lxml:amd64 python3-lxml 5.2.1-1 install ok installed python3-lz4 python3-lz4 4.0.2+dfsg-1+b3 install ok installed python3-matplotlib python3-matplotlib 3.6.3-2 install ok installed python3-matplotlib-inline python3-matplotlib-inline 0.1.6-2 install ok installed python3-minimal python3-minimal 3.11.8-1 install ok installed python3-more-itertools python3-more-itertools 10.2.0-1 install ok installed python3-mpmath python3-mpmath 1.3.0-1 install ok installed python3-networkx python3-networkx 2.8.8-2 install ok installed python3-numpy python3-numpy 1:1.26.4+ds-6 install ok installed python3-packaging python3-packaging 24.0-1 install ok installed python3-pandas python3-pandas 2.1.4+dfsg-7 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.1.4+dfsg-7 install ok installed python3-parso python3-parso 0.8.3-1 install ok installed python3-pathspec python3-pathspec 0.12.1-1 install ok installed python3-pexpect python3-pexpect 4.9-2 install ok installed python3-pickleshare python3-pickleshare 0.7.5-5 install ok installed python3-pil:amd64 python3-pil 10.3.0-2 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 10.3.0-2 install ok installed python3-pkg-resources python3-pkg-resources 68.1.2-2 install ok installed python3-pluggy python3-pluggy 1.5.0-1 install ok installed python3-prompt-toolkit python3-prompt-toolkit 3.0.43-1 install ok installed python3-ptyprocess python3-ptyprocess 0.7.0-5 install ok installed python3-pure-eval python3-pure-eval 0.2.2-1 install ok installed python3-pyfaidx python3-pyfaidx 0.8.1.1-1 install ok installed python3-pyfastx python3-pyfastx 2.1.0-1 install ok installed python3-pygments python3-pygments 2.17.2+dfsg-1 install ok installed python3-pygtrie python3-pygtrie 2.2-2 install ok installed python3-pyparsing python3-pyparsing 3.1.2-1 install ok installed python3-pyrsistent:amd64 python3-pyrsistent 0.20.0-1+b1 install ok installed python3-referencing python3-referencing 0.31.0-1 install ok installed python3-reportlab python3-reportlab 4.2.0-1 install ok installed python3-requests python3-requests 2.31.0+dfsg-1 install ok installed python3-rlpycairo python3-rlpycairo 0.3.0-3 install ok installed python3-rpds-py python3-rpds-py 0.12.0-3 install ok installed python3-s3transfer python3-s3transfer 0.10.1-1 install ok installed python3-schedule python3-schedule 1.2.1-0.1 install ok installed python3-scipy python3-scipy 1.11.4-6 install ok installed python3-seaborn python3-seaborn 0.13.2-3 install ok installed python3-setuptools python3-setuptools 68.1.2-2 install ok installed python3-setuptools-scm python3-setuptools-scm 8.0.4-2 install ok installed python3-six python3-six 1.16.0-6 install ok installed python3-stack-data python3-stack-data 0.6.3-1 install ok installed python3-sympy python3-sympy 1.12-7 install ok installed python3-tk:amd64 python3-tk 3.12.3-1 install ok installed python3-toml python3-toml 0.10.2-1 install ok installed python3-traitlets python3-traitlets 5.14.2-2 install ok installed python3-treetime python3-treetime 0.11.1-1 install ok installed python3-trove-classifiers python3-trove-classifiers 2024.1.31-1 install ok installed python3-typeshed python3-typeshed 0.0~git20231111.6764465-3 install ok installed python3-typing-extensions python3-typing-extensions 4.10.0-1 install ok installed python3-tz python3-tz 2024.1-2 install ok installed python3-ufolib2 python3-ufolib2 0.16.0+dfsg1-1 install ok installed python3-unicodedata2 python3-unicodedata2 15.1.0+ds-1+b1 install ok installed python3-urllib3 python3-urllib3 1.26.18-2 install ok installed python3-wcwidth python3-wcwidth 0.2.13+dfsg1-1 install ok installed python3-xopen python3-xopen 1.7.0-2 install ok installed python3-zipp python3-zipp 1.0.0-6 install ok installed python3-zstandard python3-zstandard 0.22.0-1+b1 install ok installed python3.11 python3.11 3.11.9-1 install ok installed python3.11-minimal python3.11-minimal 3.11.9-1 install ok installed python3.9 python3.9 3.9.2-1 install ok installed python3.9-minimal python3.9-minimal 3.9.2-1 install ok installed raxml raxml 8.2.13+dfsg-1 install ok installed readline-common readline-common 8.2-4 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.22 install ok installed seqmagick seqmagick 0.8.6-2 install ok installed sgml-base sgml-base 1.31 install ok installed sysvinit-utils sysvinit-utils 3.09-1 install ok installed tar tar 1.35+dfsg-3 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-7 install ok installed ttf-bitstream-vera ttf-bitstream-vera 1.10-8.2 install ok installed tzdata tzdata 2024a-3 install ok installed ucf ucf 3.0043+nmu1 install ok installed unicode-data unicode-data 15.1.0-1 install ok installed usrmerge usrmerge 39 install ok installed util-linux util-linux 2.40-6 install ok installed vcftools vcftools 0.1.16-3+b1 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+23 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.2 install ok installed xfonts-utils xfonts-utils 1:7.7+6 install ok installed xml-core xml-core 0.19 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3.1 4m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 4m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-get', 'remove', 'blt', 'ca-certificates', 'fasttree', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-lyx', 'fonts-urw-base35', 'ibverbs-providers:amd64', 'ipython3', 'iqtree', 'libamd-comgr2:amd64', 'libamd2:amd64', 'libamd3:amd64', 'libamdhip64-5', 'libatomic1:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcamd2:amd64', 'libcamd3:amd64', 'libccolamd2:amd64', 'libccolamd3:amd64', 'libcholmod3:amd64', 'libcholmod5:amd64', 'libcolamd2:amd64', 'libcolamd3:amd64', 'libdeflate0:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libdsdp-5.8t64', 'libedit2:amd64', 'libelf1t64:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libexpat1:amd64', 'libfabric1:amd64', 'libfftw3-double3:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgsl27:amd64', 'libgslcblas0:amd64', 'libharfbuzz0b:amd64', 'libhsa-runtime64-1', 'libhsakmt1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu67:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libllvm17t64:amd64', 'libltdl7:amd64', 'libmetis5:amd64', 'libmpdec3:amd64', 'libmunge2:amd64', 'libncursesw6:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenjp2-7:amd64', 'libopenmpi3t64:amd64', 'libpciaccess0:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpmix2t64:amd64', 'libpng16-16t64:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librdmacm1t64:amd64', 'libreadline8t64:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libsuitesparseconfig5:amd64', 'libsuitesparseconfig7:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtiff6:amd64', 'libtk8.6:amd64', 'libucx0:amd64', 'libumfpack5:amd64', 'libumfpack6:amd64', 'libwebp6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libz3-4:amd64', 'mafft', 'mailcap', 'media-types', 'mime-support', 'netbase', 'ocl-icd-libopencl1:amd64', 'openssl', 'perl-modules-5.32', 'pigz', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-asttokens', 'python3-attr', 'python3-backcall', 'python3-bcbio-gff', 'python3-biopython', 'python3-boto', 'python3-boto3', 'python3-botocore', 'python3-brotli', 'python3-cairo', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cvxopt', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dendropy', 'python3-distutils', 'python3-executing', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-hatch-vcs', 'python3-hatchling', 'python3-idna', 'python3-importlib-metadata', 'python3-ipdb', 'python3-ipython', 'python3-ipython-genutils', 'python3-isodate', 'python3-jedi', 'python3-jmespath', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parso', 'python3-pathspec', 'python3-pexpect', 'python3-pickleshare', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pluggy', 'python3-prompt-toolkit', 'python3-ptyprocess', 'python3-pure-eval', 'python3-pyfaidx', 'python3-pyfastx', 'python3-pygments', 'python3-pygtrie', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-referencing', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-rpds-py', 'python3-s3transfer', 'python3-schedule', 'python3-scipy', 'python3-seaborn', 'python3-setuptools', 'python3-setuptools-scm', 'python3-six', 'python3-stack-data', 'python3-sympy', 'python3-tk:amd64', 'python3-toml', 'python3-traitlets', 'python3-treetime', 'python3-trove-classifiers', 'python3-typeshed', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wcwidth', 'python3-xopen', 'python3-zipp', 'python3-zstandard', 'python3.11', 'python3.11-minimal', 'python3.9', 'python3.9-minimal', 'raxml', 'readline-common', 'sensible-utils', 'seqmagick', 'sgml-base', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'unicode-data', 'vcftools', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'augur'] 5m7.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: augur blt ca-certificates fasttree fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx fonts-urw-base35 ibverbs-providers ipython3 iqtree libamd-comgr2 libamd2 libamd3 libamdhip64-5 libatomic1 libblas3 libbrotli1 libbsd0 libcairo2 libcamd2 libcamd3 libccolamd2 libccolamd3 libcholmod3 libcholmod5 libcolamd2 libcolamd3 libdeflate0 libdrm-amdgpu1 libdrm-common libdrm2 libdsdp-5.8t64 libedit2 libelf1t64 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1 libfabric1 libfftw3-double3 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0t64 libglpk40 libgomp1 libgraphite2-3 libgsl27 libgslcblas0 libharfbuzz0b libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libibverbs1 libicu67 libicu72 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libllvm17t64 libltdl7 libmetis5 libmpdec3 libmunge2 libncursesw6 libnl-3-200 libnl-route-3-200 libnuma1 libopenjp2-7 libopenmpi3t64 libpciaccess0 libperl5.32 libpixman-1-0 libpmix2t64 libpng16-16t64 libpsm-infinipath1 libpsm2-2 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libpython3.9-minimal libpython3.9-stdlib libqhull-r8.0 libquadmath0 libraqm0 librdmacm1t64 libreadline8t64 libsharpyuv0 libsqlite3-0 libsuitesparseconfig5 libsuitesparseconfig7 libtcl8.6 libtiff5 libtiff6 libtk8.6 libucx0 libumfpack5 libumfpack6 libwebp6 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxnvctrl0 libxrender1 libxslt1.1 libxss1 libz3-4 mafft mailcap media-types mime-support netbase ocl-icd-libopencl1 openssl perl-modules-5.32 pigz python-matplotlib-data python3 python3-appdirs python3-asttokens python3-attr python3-backcall python3-bcbio-gff python3-biopython python3-boto python3-boto3 python3-botocore python3-brotli python3-cairo python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-contourpy python3-cvxopt python3-cycler python3-dateutil python3-decorator python3-dendropy python3-distutils python3-executing python3-fonttools python3-freetype python3-fs python3-hatch-vcs python3-hatchling python3-idna python3-importlib-metadata python3-ipdb python3-ipython python3-ipython-genutils python3-isodate python3-jedi python3-jmespath python3-jsonschema python3-jsonschema-specifications python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-matplotlib-inline python3-minimal python3-more-itertools python3-mpmath python3-networkx python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-parso python3-pathspec python3-pexpect python3-pickleshare python3-pil python3-pil.imagetk python3-pkg-resources python3-pluggy python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pyfaidx python3-pyfastx python3-pygments python3-pygtrie python3-pyparsing python3-pyrsistent python3-referencing python3-reportlab python3-requests python3-rlpycairo python3-rpds-py python3-s3transfer python3-schedule python3-scipy python3-seaborn python3-setuptools python3-setuptools-scm python3-six python3-stack-data python3-sympy python3-tk python3-toml python3-traitlets python3-treetime python3-trove-classifiers python3-typeshed python3-typing-extensions python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-wcwidth python3-xopen python3-zipp python3-zstandard python3.11 python3.11-minimal python3.9 python3.9-minimal raxml readline-common sensible-utils seqmagick sgml-base tk8.6-blt2.5 ttf-bitstream-vera ucf unicode-data vcftools w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 0 upgraded, 0 newly installed, 255 to remove and 0 not upgraded. After this operation, 1081 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 37441 files and directories currently installed.) Removing augur (24.3.0-1) ... Removing seqmagick (0.8.6-2) ... Removing python3-treetime (0.11.1-1) ... Removing python3-seaborn (0.13.2-3) ... Removing python3-matplotlib (3.6.3-2) ... Removing python3-pil.imagetk:amd64 (10.3.0-2) ... Removing python3-tk:amd64 (3.12.3-1) ... Removing blt (2.5.3+dfsg-7) ... Removing python3-boto3 (1.34.46+dfsg-1) ... Removing python3-s3transfer (0.10.1-1) ... Removing python3-botocore (1.34.46+repack-1) ... Removing python3-boto (2.49.0-4.1) ... Removing python3-requests (2.31.0+dfsg-1) ... Removing python3-certifi (2023.11.17-1) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing fasttree (2.1.11-2) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-7) ... Removing libtk8.6:amd64 (8.6.14-1) ... Removing libxft2:amd64 (2.3.6-1+b1) ... Removing python-matplotlib-data (3.6.3-2) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing fonts-lyx (2.4.0~RC4-1) ... Removing iqtree (2.0.7+dfsg-1+b1) ... Removing libopenmpi3t64:amd64 (4.1.6-12) ... Removing libucx0:amd64 (1.16.0+ds-5) ... Removing libfabric1:amd64 (1.17.0-3+b1) ... Removing ibverbs-providers:amd64 (50.0-2+b1) ... Removing python3-ipdb (0.13.13-1) ... Removing ipython3 (8.20.0-1) ... Removing libamdhip64-5 (5.7.1-3) ... Removing libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b1) ... Removing libumfpack5:amd64 (1:5.8.1+dfsg-2) ... Removing libcholmod3:amd64 (1:5.8.1+dfsg-2) ... Removing libamd2:amd64 (1:5.8.1+dfsg-2) ... Removing python3-cvxopt (1.3.0+dfsg-1+b5) ... Removing libumfpack6:amd64 (1:7.7.0+dfsg-2) ... Removing libcholmod5:amd64 (1:7.7.0+dfsg-2) ... Removing libatomic1:amd64 (14-20240330-1) ... Removing python3-pandas (2.1.4+dfsg-7) ... Removing python3-pandas-lib:amd64 (2.1.4+dfsg-7) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing libllvm17t64:amd64 (1:17.0.6-9+b2) ... Removing libedit2:amd64 (3.1-20230828-1) ... Removing libcamd2:amd64 (1:5.8.1+dfsg-2) ... Removing libcamd3:amd64 (1:7.7.0+dfsg-2) ... Removing libccolamd2:amd64 (1:5.8.1+dfsg-2) ... Removing libccolamd3:amd64 (1:7.7.0+dfsg-2) ... Removing libcolamd2:amd64 (1:5.8.1+dfsg-2) ... Removing libglpk40:amd64 (5.0-1+b1) ... Removing libcolamd3:amd64 (1:7.7.0+dfsg-2) ... Removing libtiff5:amd64 (4.2.0-1+deb11u5) ... Removing libhsa-runtime64-1 (5.7.1-2) ... Removing libhsakmt1:amd64 (5.7.0-1) ... Removing libdrm-amdgpu1:amd64 (2.4.120-2) ... Removing libdrm2:amd64 (2.4.120-2) ... Removing libdrm-common (2.4.120-2) ... Removing libdsdp-5.8t64 (5.8-10.1) ... Removing libelf1t64:amd64 (0.191-1+b1) ... Removing libpmix2t64:amd64 (5.0.2-3) ... Removing libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-8.1+b3) ... Removing libevent-core-2.1-7t64:amd64 (2.1.12-stable-8.1+b3) ... Removing python3.9 (3.9.2-1) ... Removing python3.9-minimal (3.9.2-1) ... Removing python3-jsonschema (4.19.2-2) ... Removing python3-jsonschema-specifications (2023.12.1-1) ... Removing python3-referencing (0.31.0-1) ... Removing python3-rpds-py (0.12.0-3) ... Removing python3-hatch-vcs (0.4.0-1) ... Removing python3-setuptools-scm (8.0.4-2) ... Removing libfftw3-double3:amd64 (3.3.10-1+b2) ... Removing libgsl27:amd64 (2.7.1+dfsg-6+b1) ... Removing libgslcblas0:amd64 (2.7.1+dfsg-6+b1) ... Removing libhwloc-plugins:amd64 (2.10.0-1+b1) ... Removing libhwloc15:amd64 (2.10.0-1+b1) ... Removing librdmacm1t64:amd64 (50.0-2+b1) ... Removing libibverbs1:amd64 (50.0-2+b1) ... Removing libicu67:amd64 (67.1-7) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing libltdl7:amd64 (2.4.7-7) ... Removing libmetis5:amd64 (5.1.0.dfsg-7+b1) ... Removing libpython3.9-stdlib:amd64 (3.9.2-1) ... Removing libmpdec3:amd64 (2.5.1-1) ... Removing libmunge2:amd64 (0.5.15-4) ... Removing libnl-route-3-200:amd64 (3.7.0-0.3) ... Removing libnl-3-200:amd64 (3.7.0-0.3) ... Removing libpsm2-2 (11.2.185-2) ... Removing libnuma1:amd64 (2.0.18-1) ... Removing libpciaccess0:amd64 (0.17-3) ... Removing libperl5.32:amd64 (5.32.1-4+deb11u3) ... Removing libpsm-infinipath1 (3.3+20.604758e7-6.3) ... update-alternatives: warning: alternative /usr/lib/libpsm1/libpsm_infinipath.so.1.16 (part of link group libpsm_infinipath.so.1) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/libpsm_infinipath.so.1 is dangling; it will be updated with best choice Removing libpython3.9-minimal:amd64 (3.9.2-1) ... Removing libqhull-r8.0:amd64 (2020.2-6+b1) ... Removing libquadmath0:amd64 (14-20240330-1) ... Removing python3-pyfastx (2.1.0-1) ... Removing libsuitesparseconfig5:amd64 (1:5.8.1+dfsg-2) ... Removing libtcl8.6:amd64 (8.6.14+dfsg-1) ... Removing libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Removing libxnvctrl0:amd64 (535.171.04-1) ... Removing libz3-4:amd64 (4.8.12-3.1+b2) ... Removing mafft (7.505-1) ... Removing mime-support (3.66) ... Removing mailcap (3.70+nmu1) ... Removing ocl-icd-libopencl1:amd64 (2.3.2-1+b1) ... Removing openssl (3.2.1-3) ... Removing perl-modules-5.32 (5.32.1-4+deb11u3) ... Removing python3-xopen (1.7.0-2) ... Removing pigz (2.8-1) ... Removing python3-ipython (8.20.0-1) ... Removing python3-stack-data (0.6.3-1) ... Removing python3-executing (2.0.1-0.1) ... Removing python3-asttokens (2.4.1-1) ... Removing python3-backcall (0.2.0-4) ... Removing python3-bcbio-gff (0.7.1-1) ... Removing python3-zstandard (0.22.0-1+b1) ... Removing python3-cffi-backend:amd64 (1.16.0-2+b1) ... Removing python3-charset-normalizer (3.3.2-1) ... Removing python3-contourpy (1.0.7-3) ... Removing python3-cycler (0.12.1-1) ... Removing python3-dateutil (2.9.0-2) ... Removing python3-dendropy (4.6.1-1) ... Removing python3-hatchling (1.24.2-1) ... Removing python3-idna (3.6-2) ... Removing python3-pyfaidx (0.8.1.1-1) ... Removing python3-importlib-metadata (4.12.0-1) ... Removing python3-ipython-genutils (0.2.0-6) ... Removing python3-isodate (0.6.1-2) ... Removing python3-jedi (0.19.1+ds1-1) ... Removing python3-jmespath (1.0.1-1) ... Removing python3-kiwisolver (1.4.5-1) ... Removing python3-matplotlib-inline (0.1.6-2) ... Removing python3-zipp (1.0.0-6) ... Removing python3-more-itertools (10.2.0-1) ... Removing python3-networkx (2.8.8-2) ... Removing python3-packaging (24.0-1) ... Removing python3-parso (0.8.3-1) ... Removing python3-pathspec (0.12.1-1) ... Removing python3-pexpect (4.9-2) ... Removing python3-pickleshare (0.7.5-5) ... Removing python3-pygments (2.17.2+dfsg-1) ... Removing python3-pluggy (1.5.0-1) ... Removing python3-prompt-toolkit (3.0.43-1) ... Removing python3-ptyprocess (0.7.0-5) ... Removing python3-pure-eval (0.2.2-1) ... Removing python3-pygtrie (2.2-2) ... Removing python3-pyparsing (3.1.2-1) ... Removing python3-pyrsistent:amd64 (0.20.0-1+b1) ... Removing python3-schedule (1.2.1-0.1) ... Removing python3-urllib3 (1.26.18-2) ... Removing python3-toml (0.10.2-1) ... Removing python3-traitlets (5.14.2-2) ... Removing python3-trove-classifiers (2024.1.31-1) ... Removing python3-typeshed (0.0~git20231111.6764465-3) ... Removing python3-typing-extensions (4.10.0-1) ... Removing python3-wcwidth (0.2.13+dfsg1-1) ... Removing raxml (8.2.13+dfsg-1) ... Removing ucf (3.0043+nmu1) ... Removing sensible-utils (0.0.22) ... Removing ttf-bitstream-vera (1.10-8.2) ... Removing vcftools (0.1.16-3+b1) ... Removing python3-biopython (1.83+dfsg1-2) ... Removing python3-reportlab (4.2.0-1) ... Removing python3-pil:amd64 (10.3.0-2) ... Removing python3-rlpycairo (0.3.0-3) ... Removing python3-cairo (1.26.0-1) ... Removing libcairo2:amd64 (1.18.0-3+b1) ... Removing libfontconfig1:amd64 (2.15.0-1.1) ... Removing fontconfig-config (2.15.0-1.1) ... Removing fonts-urw-base35 (20200910-8) ... Removing libamd3:amd64 (1:7.7.0+dfsg-2) ... Removing xfonts-utils (1:7.7+6) ... Removing libraqm0:amd64 (0.10.1-1+b1) ... Removing libxrender1:amd64 (1:0.9.10-1.1) ... Removing libxcb-shm0:amd64 (1.17.0-1) ... Removing libtiff6:amd64 (4.5.1+git230720-4) ... Removing libdeflate0:amd64 (1.20-1) ... Removing python3-setuptools (68.1.2-2) ... Removing python3-distutils (3.12.3-1) ... Removing libfontenc1:amd64 (1:1.1.8-1) ... Removing libfribidi0:amd64 (1.0.13-3+b1) ... Removing libharfbuzz0b:amd64 (8.3.0-2+b1) ... Removing libglib2.0-0t64:amd64 (2.78.4-7) ... Removing libsuitesparseconfig7:amd64 (1:7.7.0+dfsg-2) ... Removing libimagequant0:amd64 (2.18.0-1) ... Removing libgomp1:amd64 (14-20240330-1) ... Removing libgraphite2-3:amd64 (1.3.14-2) ... Removing libjbig0:amd64 (2.1-6.1+b1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-2+b2) ... Removing liblcms2-2:amd64 (2.14-2+b1) ... Removing liblerc4:amd64 (4.0.0+ds-4+b1) ... Removing libopenjp2-7:amd64 (2.5.0-2+b3) ... Removing libpixman-1-0:amd64 (0.42.2-1+b1) ... Removing libwebpmux3:amd64 (1.3.2-0.4+b1) ... Removing libwebpdemux2:amd64 (1.3.2-0.4+b1) ... Removing libwebp7:amd64 (1.3.2-0.4+b1) ... Removing libsharpyuv0:amd64 (1.3.2-0.4+b1) ... Removing libxcb-render0:amd64 (1.17.0-1) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing python3-chardet (5.2.0+dfsg-1) ... Removing python3-freetype (2.4.0-1) ... Removing python3-lib2to3 (3.12.3-1) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.19) ... Removing sgml-base (1.31) ... Removing xfonts-encodings (1:1.0.4-2.2) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Removing libbrotli1:amd64 (1.1.0-2+b3) ... Removing libx11-6:amd64 (2:1.8.7-1) ... Removing libxcb1:amd64 (1.17.0-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.12.2-1) ... Removing libpng16-16t64:amd64 (1.6.43-5) ... Removing libx11-data (2:1.8.7-1) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing python3-fonttools (4.46.0-1) ... Removing python3-scipy (1.11.4-6) ... Removing python3-numpy (1:1.26.4+ds-6) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Removing liblapack3:amd64 (3.12.0-3) ... Removing libgfortran5:amd64 (14-20240330-1) ... Removing python3-lxml:amd64 (5.2.1-1) ... Removing libxslt1.1:amd64 (1.1.35-1) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Removing libicu72:amd64 (72.1-4+b1) ... Removing python3-fs (2.4.16-4) ... Removing python3-appdirs (1.4.4-4) ... Removing python3-brotli (1.1.0-2+b3) ... Removing python3-decorator (5.1.1-5) ... Removing python3-lz4 (4.0.2+dfsg-1+b3) ... Removing python3-sympy (1.12-7) ... Removing python3-mpmath (1.3.0-1) ... Removing python3-pkg-resources (68.1.2-2) ... Removing python3-six (1.16.0-6) ... Removing python3-tz (2024.1-2) ... Removing python3-unicodedata2 (15.1.0+ds-1+b1) ... Removing unicode-data (15.1.0-1) ... Removing python3-ufolib2 (0.16.0+dfsg1-1) ... Removing libblas3:amd64 (3.12.0-3) ... Removing python3-attr (23.2.0-2) ... Removing python3 (3.11.8-1) ... Removing python3.11 (3.11.9-1) ... Removing libpython3-stdlib:amd64 (3.11.8-1) ... Removing libpython3.11-stdlib:amd64 (3.11.9-1) ... find: '/usr/lib/python3': No such file or directory Removing libncursesw6:amd64 (6.4+20240414-1) ... Removing python3-minimal (3.11.8-1) ... Removing libreadline8t64:amd64 (8.2-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.45.3-1) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-4) ... Removing python3.11-minimal (3.11.9-1) ... Removing libexpat1:amd64 (2.6.2-1) ... Removing libpython3.11-minimal:amd64 (3.11.9-1) ... find: '/usr/lib/python3': No such file or directory Processing triggers for libc-bin (2.37-18) ... 5m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-get', 'remove', 'blt', 'ca-certificates', 'fasttree', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-lyx', 'fonts-urw-base35', 'ibverbs-providers:amd64', 'ipython3', 'iqtree', 'libamd-comgr2:amd64', 'libamd2:amd64', 'libamd3:amd64', 'libamdhip64-5', 'libatomic1:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcamd2:amd64', 'libcamd3:amd64', 'libccolamd2:amd64', 'libccolamd3:amd64', 'libcholmod3:amd64', 'libcholmod5:amd64', 'libcolamd2:amd64', 'libcolamd3:amd64', 'libdeflate0:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libdsdp-5.8t64', 'libedit2:amd64', 'libelf1t64:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libexpat1:amd64', 'libfabric1:amd64', 'libfftw3-double3:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgsl27:amd64', 'libgslcblas0:amd64', 'libharfbuzz0b:amd64', 'libhsa-runtime64-1', 'libhsakmt1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu67:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libllvm17t64:amd64', 'libltdl7:amd64', 'libmetis5:amd64', 'libmpdec3:amd64', 'libmunge2:amd64', 'libncursesw6:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenjp2-7:amd64', 'libopenmpi3t64:amd64', 'libpciaccess0:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpmix2t64:amd64', 'libpng16-16t64:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librdmacm1t64:amd64', 'libreadline8t64:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libsuitesparseconfig5:amd64', 'libsuitesparseconfig7:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtiff6:amd64', 'libtk8.6:amd64', 'libucx0:amd64', 'libumfpack5:amd64', 'libumfpack6:amd64', 'libwebp6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libz3-4:amd64', 'mafft', 'mailcap', 'media-types', 'mime-support', 'netbase', 'ocl-icd-libopencl1:amd64', 'openssl', 'perl-modules-5.32', 'pigz', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-asttokens', 'python3-attr', 'python3-backcall', 'python3-bcbio-gff', 'python3-biopython', 'python3-boto', 'python3-boto3', 'python3-botocore', 'python3-brotli', 'python3-cairo', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cvxopt', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dendropy', 'python3-distutils', 'python3-executing', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-hatch-vcs', 'python3-hatchling', 'python3-idna', 'python3-importlib-metadata', 'python3-ipdb', 'python3-ipython', 'python3-ipython-genutils', 'python3-isodate', 'python3-jedi', 'python3-jmespath', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parso', 'python3-pathspec', 'python3-pexpect', 'python3-pickleshare', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pluggy', 'python3-prompt-toolkit', 'python3-ptyprocess', 'python3-pure-eval', 'python3-pyfaidx', 'python3-pyfastx', 'python3-pygments', 'python3-pygtrie', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-referencing', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-rpds-py', 'python3-s3transfer', 'python3-schedule', 'python3-scipy', 'python3-seaborn', 'python3-setuptools', 'python3-setuptools-scm', 'python3-six', 'python3-stack-data', 'python3-sympy', 'python3-tk:amd64', 'python3-toml', 'python3-traitlets', 'python3-treetime', 'python3-trove-classifiers', 'python3-typeshed', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wcwidth', 'python3-xopen', 'python3-zipp', 'python3-zstandard', 'python3.11', 'python3.11-minimal', 'python3.9', 'python3.9-minimal', 'raxml', 'readline-common', 'sensible-utils', 'seqmagick', 'sgml-base', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'unicode-data', 'vcftools', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'augur'] 5m7.6s INFO: Running scripts post_remove 5m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_remove_exceptions'] 5m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_remove_exceptions'] 5m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'dpkg', '--purge', 'blt', 'ca-certificates', 'fasttree', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-lyx', 'fonts-urw-base35', 'ibverbs-providers:amd64', 'ipython3', 'iqtree', 'libamd-comgr2:amd64', 'libamd2:amd64', 'libamd3:amd64', 'libamdhip64-5', 'libatomic1:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcamd2:amd64', 'libcamd3:amd64', 'libccolamd2:amd64', 'libccolamd3:amd64', 'libcholmod3:amd64', 'libcholmod5:amd64', 'libcolamd2:amd64', 'libcolamd3:amd64', 'libdeflate0:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libdsdp-5.8t64', 'libedit2:amd64', 'libelf1t64:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libexpat1:amd64', 'libfabric1:amd64', 'libfftw3-double3:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgsl27:amd64', 'libgslcblas0:amd64', 'libharfbuzz0b:amd64', 'libhsa-runtime64-1', 'libhsakmt1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu67:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libllvm17t64:amd64', 'libltdl7:amd64', 'libmetis5:amd64', 'libmpdec3:amd64', 'libmunge2:amd64', 'libncursesw6:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenjp2-7:amd64', 'libopenmpi3t64:amd64', 'libpciaccess0:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpmix2t64:amd64', 'libpng16-16t64:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librdmacm1t64:amd64', 'libreadline8t64:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libsuitesparseconfig5:amd64', 'libsuitesparseconfig7:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtiff6:amd64', 'libtk8.6:amd64', 'libucx0:amd64', 'libumfpack5:amd64', 'libumfpack6:amd64', 'libwebp6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libz3-4:amd64', 'mafft', 'mailcap', 'media-types', 'mime-support', 'netbase', 'ocl-icd-libopencl1:amd64', 'openssl', 'perl-modules-5.32', 'pigz', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-asttokens', 'python3-attr', 'python3-backcall', 'python3-bcbio-gff', 'python3-biopython', 'python3-boto', 'python3-boto3', 'python3-botocore', 'python3-brotli', 'python3-cairo', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cvxopt', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dendropy', 'python3-distutils', 'python3-executing', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-hatch-vcs', 'python3-hatchling', 'python3-idna', 'python3-importlib-metadata', 'python3-ipdb', 'python3-ipython', 'python3-ipython-genutils', 'python3-isodate', 'python3-jedi', 'python3-jmespath', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parso', 'python3-pathspec', 'python3-pexpect', 'python3-pickleshare', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pluggy', 'python3-prompt-toolkit', 'python3-ptyprocess', 'python3-pure-eval', 'python3-pyfaidx', 'python3-pyfastx', 'python3-pygments', 'python3-pygtrie', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-referencing', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-rpds-py', 'python3-s3transfer', 'python3-schedule', 'python3-scipy', 'python3-seaborn', 'python3-setuptools', 'python3-setuptools-scm', 'python3-six', 'python3-stack-data', 'python3-sympy', 'python3-tk:amd64', 'python3-toml', 'python3-traitlets', 'python3-treetime', 'python3-trove-classifiers', 'python3-typeshed', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wcwidth', 'python3-xopen', 'python3-zipp', 'python3-zstandard', 'python3.11', 'python3.11-minimal', 'python3.9', 'python3.9-minimal', 'raxml', 'readline-common', 'sensible-utils', 'seqmagick', 'sgml-base', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'unicode-data', 'vcftools', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core'] 5m8.4s DUMP: dpkg: warning: ignoring request to remove blt which isn't installed (Reading database ... 7536 files and directories currently installed.) Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove fasttree which isn't installed Purging configuration files for fontconfig-config (2.15.0-1.1) ... dpkg: warning: while removing fontconfig-config, directory '/etc/fonts/conf.d' not empty so not removed Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... dpkg: warning: while removing fonts-dejavu-mono, directory '/etc/fonts' not empty so not removed dpkg: warning: ignoring request to remove fonts-lyx which isn't installed Purging configuration files for fonts-urw-base35 (20200910-8) ... Purging configuration files for ibverbs-providers:amd64 (50.0-2+b1) ... dpkg: warning: ignoring request to remove ipython3 which isn't installed dpkg: warning: ignoring request to remove iqtree which isn't installed dpkg: warning: ignoring request to remove libamd-comgr2 which isn't installed dpkg: warning: ignoring request to remove libamd2 which isn't installed dpkg: warning: ignoring request to remove libamd3 which isn't installed dpkg: warning: ignoring request to remove libamdhip64-5 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcamd2 which isn't installed dpkg: warning: ignoring request to remove libcamd3 which isn't installed dpkg: warning: ignoring request to remove libccolamd2 which isn't installed dpkg: warning: ignoring request to remove libccolamd3 which isn't installed dpkg: warning: ignoring request to remove libcholmod3 which isn't installed dpkg: warning: ignoring request to remove libcholmod5 which isn't installed dpkg: warning: ignoring request to remove libcolamd2 which isn't installed dpkg: warning: ignoring request to remove libcolamd3 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libdrm-amdgpu1 which isn't installed dpkg: warning: ignoring request to remove libdrm-common which isn't installed dpkg: warning: ignoring request to remove libdrm2 which isn't installed dpkg: warning: ignoring request to remove libdsdp-5.8t64 which isn't installed dpkg: warning: ignoring request to remove libedit2 which isn't installed dpkg: warning: ignoring request to remove libelf1t64 which isn't installed dpkg: warning: ignoring request to remove libevent-core-2.1-7t64 which isn't installed dpkg: warning: ignoring request to remove libevent-pthreads-2.1-7t64 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfabric1 which isn't installed dpkg: warning: ignoring request to remove libfftw3-double3 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0t64:amd64 (2.78.4-7) ... dpkg: warning: ignoring request to remove libglpk40 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libgsl27 which isn't installed dpkg: warning: ignoring request to remove libgslcblas0 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhsa-runtime64-1 which isn't installed dpkg: warning: ignoring request to remove libhsakmt1 which isn't installed dpkg: warning: ignoring request to remove libhwloc-plugins which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libicu67 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-jquery-ui which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove libllvm17t64 which isn't installed dpkg: warning: ignoring request to remove libltdl7 which isn't installed dpkg: warning: ignoring request to remove libmetis5 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libmunge2 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed Purging configuration files for libnl-3-200:amd64 (3.7.0-0.3) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libopenmpi3t64 which isn't installed dpkg: warning: ignoring request to remove libpciaccess0 which isn't installed dpkg: warning: ignoring request to remove libperl5.32 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpmix2t64 which isn't installed dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed Purging configuration files for libpsm-infinipath1 (3.3+20.604758e7-6.3) ... dpkg: warning: ignoring request to remove libpsm2-2 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.9-1) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed Purging configuration files for libpython3.9-minimal:amd64 (3.9.2-1) ... dpkg: warning: ignoring request to remove libpython3.9-stdlib which isn't installed dpkg: warning: ignoring request to remove libqhull-r8.0 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed dpkg: warning: ignoring request to remove librdmacm1t64 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-4) ... dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libsuitesparseconfig5 which isn't installed dpkg: warning: ignoring request to remove libsuitesparseconfig7 which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libucx0 which isn't installed dpkg: warning: ignoring request to remove libumfpack5 which isn't installed dpkg: warning: ignoring request to remove libumfpack6 which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxnvctrl0 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libz3-4 which isn't installed dpkg: warning: ignoring request to remove mafft which isn't installed Purging configuration files for mailcap (3.70+nmu1) ... Purging configuration files for media-types (10.1.0) ... dpkg: warning: ignoring request to remove mime-support which isn't installed Purging configuration files for netbase (6.4) ... dpkg: warning: ignoring request to remove ocl-icd-libopencl1 which isn't installed Purging configuration files for openssl (3.2.1-3) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed dpkg: warning: ignoring request to remove pigz which isn't installed Purging configuration files for python-matplotlib-data (3.6.3-2) ... Purging configuration files for python3 (3.11.8-1) ... dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-asttokens which isn't installed dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-backcall which isn't installed dpkg: warning: ignoring request to remove python3-bcbio-gff which isn't installed dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-boto which isn't installed dpkg: warning: ignoring request to remove python3-boto3 which isn't installed dpkg: warning: ignoring request to remove python3-botocore which isn't installed dpkg: warning: ignoring request to remove python3-brotli which isn't installed dpkg: warning: ignoring request to remove python3-cairo which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-cffi-backend which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-contourpy which isn't installed dpkg: warning: ignoring request to remove python3-cvxopt which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-dendropy which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-executing which isn't installed dpkg: warning: ignoring request to remove python3-fonttools which isn't installed dpkg: warning: ignoring request to remove python3-freetype which isn't installed dpkg: warning: ignoring request to remove python3-fs which isn't installed dpkg: warning: ignoring request to remove python3-hatch-vcs which isn't installed dpkg: warning: ignoring request to remove python3-hatchling which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-importlib-metadata which isn't installed dpkg: warning: ignoring request to remove python3-ipdb which isn't installed dpkg: warning: ignoring request to remove python3-ipython which isn't installed dpkg: warning: ignoring request to remove python3-ipython-genutils which isn't installed dpkg: warning: ignoring request to remove python3-isodate which isn't installed dpkg: warning: ignoring request to remove python3-jedi which isn't installed dpkg: warning: ignoring request to remove python3-jmespath which isn't installed Purging configuration files for python3-jsonschema (4.19.2-2) ... dpkg: warning: ignoring request to remove python3-jsonschema-specifications which isn't installed dpkg: warning: ignoring request to remove python3-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-lz4 which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib-inline which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-mpmath which isn't installed dpkg: warning: ignoring request to remove python3-networkx which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-parso which isn't installed dpkg: warning: ignoring request to remove python3-pathspec which isn't installed dpkg: warning: ignoring request to remove python3-pexpect which isn't installed dpkg: warning: ignoring request to remove python3-pickleshare which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pil.imagetk which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-pluggy which isn't installed dpkg: warning: ignoring request to remove python3-prompt-toolkit which isn't installed dpkg: warning: ignoring request to remove python3-ptyprocess which isn't installed dpkg: warning: ignoring request to remove python3-pure-eval which isn't installed dpkg: warning: ignoring request to remove python3-pyfaidx which isn't installed dpkg: warning: ignoring request to remove python3-pyfastx which isn't installed dpkg: warning: ignoring request to remove python3-pygments which isn't installed dpkg: warning: ignoring request to remove python3-pygtrie which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pyrsistent which isn't installed dpkg: warning: ignoring request to remove python3-referencing which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-rlpycairo which isn't installed dpkg: warning: ignoring request to remove python3-rpds-py which isn't installed dpkg: warning: ignoring request to remove python3-s3transfer which isn't installed dpkg: warning: ignoring request to remove python3-schedule which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-seaborn which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-setuptools-scm which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-stack-data which isn't installed Purging configuration files for python3-sympy (1.12-7) ... dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-toml which isn't installed dpkg: warning: ignoring request to remove python3-traitlets which isn't installed dpkg: warning: ignoring request to remove python3-treetime which isn't installed dpkg: warning: ignoring request to remove python3-trove-classifiers which isn't installed dpkg: warning: ignoring request to remove python3-typeshed which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-ufolib2 which isn't installed dpkg: warning: ignoring request to remove python3-unicodedata2 which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-wcwidth which isn't installed dpkg: warning: ignoring request to remove python3-xopen which isn't installed dpkg: warning: ignoring request to remove python3-zipp which isn't installed dpkg: warning: ignoring request to remove python3-zstandard which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed Purging configuration files for python3.11-minimal (3.11.9-1) ... dpkg: warning: ignoring request to remove python3.9 which isn't installed Purging configuration files for python3.9-minimal (3.9.2-1) ... dpkg: warning: ignoring request to remove raxml which isn't installed Purging configuration files for readline-common (8.2-4) ... dpkg: warning: ignoring request to remove sensible-utils which isn't installed dpkg: warning: ignoring request to remove seqmagick which isn't installed Purging configuration files for sgml-base (1.31) ... dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed dpkg: warning: ignoring request to remove ttf-bitstream-vera which isn't installed Purging configuration files for ucf (3.0043+nmu1) ... dpkg: warning: ignoring request to remove unicode-data which isn't installed dpkg: warning: ignoring request to remove vcftools which isn't installed Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+23) ... dpkg: warning: while removing x11-common, directory '/etc/init.d' not empty so not removed dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+6) ... Purging configuration files for xml-core (0.19) ... 5m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'dpkg', '--purge', 'blt', 'ca-certificates', 'fasttree', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-lyx', 'fonts-urw-base35', 'ibverbs-providers:amd64', 'ipython3', 'iqtree', 'libamd-comgr2:amd64', 'libamd2:amd64', 'libamd3:amd64', 'libamdhip64-5', 'libatomic1:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcamd2:amd64', 'libcamd3:amd64', 'libccolamd2:amd64', 'libccolamd3:amd64', 'libcholmod3:amd64', 'libcholmod5:amd64', 'libcolamd2:amd64', 'libcolamd3:amd64', 'libdeflate0:amd64', 'libdrm-amdgpu1:amd64', 'libdrm-common', 'libdrm2:amd64', 'libdsdp-5.8t64', 'libedit2:amd64', 'libelf1t64:amd64', 'libevent-core-2.1-7t64:amd64', 'libevent-pthreads-2.1-7t64:amd64', 'libexpat1:amd64', 'libfabric1:amd64', 'libfftw3-double3:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libglpk40:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libgsl27:amd64', 'libgslcblas0:amd64', 'libharfbuzz0b:amd64', 'libhsa-runtime64-1', 'libhsakmt1:amd64', 'libhwloc-plugins:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libicu67:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'liblerc4:amd64', 'libllvm17t64:amd64', 'libltdl7:amd64', 'libmetis5:amd64', 'libmpdec3:amd64', 'libmunge2:amd64', 'libncursesw6:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libopenjp2-7:amd64', 'libopenmpi3t64:amd64', 'libpciaccess0:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpmix2t64:amd64', 'libpng16-16t64:amd64', 'libpsm-infinipath1', 'libpsm2-2', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'librdmacm1t64:amd64', 'libreadline8t64:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libsuitesparseconfig5:amd64', 'libsuitesparseconfig7:amd64', 'libtcl8.6:amd64', 'libtiff5:amd64', 'libtiff6:amd64', 'libtk8.6:amd64', 'libucx0:amd64', 'libumfpack5:amd64', 'libumfpack6:amd64', 'libwebp6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxnvctrl0:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libz3-4:amd64', 'mafft', 'mailcap', 'media-types', 'mime-support', 'netbase', 'ocl-icd-libopencl1:amd64', 'openssl', 'perl-modules-5.32', 'pigz', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-asttokens', 'python3-attr', 'python3-backcall', 'python3-bcbio-gff', 'python3-biopython', 'python3-boto', 'python3-boto3', 'python3-botocore', 'python3-brotli', 'python3-cairo', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-contourpy', 'python3-cvxopt', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dendropy', 'python3-distutils', 'python3-executing', 'python3-fonttools', 'python3-freetype', 'python3-fs', 'python3-hatch-vcs', 'python3-hatchling', 'python3-idna', 'python3-importlib-metadata', 'python3-ipdb', 'python3-ipython', 'python3-ipython-genutils', 'python3-isodate', 'python3-jedi', 'python3-jmespath', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-more-itertools', 'python3-mpmath', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-parso', 'python3-pathspec', 'python3-pexpect', 'python3-pickleshare', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pluggy', 'python3-prompt-toolkit', 'python3-ptyprocess', 'python3-pure-eval', 'python3-pyfaidx', 'python3-pyfastx', 'python3-pygments', 'python3-pygtrie', 'python3-pyparsing', 'python3-pyrsistent:amd64', 'python3-referencing', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-rpds-py', 'python3-s3transfer', 'python3-schedule', 'python3-scipy', 'python3-seaborn', 'python3-setuptools', 'python3-setuptools-scm', 'python3-six', 'python3-stack-data', 'python3-sympy', 'python3-tk:amd64', 'python3-toml', 'python3-traitlets', 'python3-treetime', 'python3-trove-classifiers', 'python3-typeshed', 'python3-typing-extensions', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wcwidth', 'python3-xopen', 'python3-zipp', 'python3-zstandard', 'python3.11', 'python3.11-minimal', 'python3.9', 'python3.9-minimal', 'raxml', 'readline-common', 'sensible-utils', 'seqmagick', 'sgml-base', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'unicode-data', 'vcftools', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core'] 5m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'dpkg', '--purge', 'augur'] 5m8.4s DUMP: dpkg: warning: ignoring request to remove augur which isn't installed 5m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'dpkg', '--purge', 'augur'] 5m8.4s INFO: Running scripts post_purge 5m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_purge_exceptions'] 5m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_purge_exceptions'] 5m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'dpkg', '--purge', '--pending'] 5m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'dpkg', '--purge', '--pending'] 5m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'dpkg', '--remove', '--pending'] 5m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'dpkg', '--remove', '--pending'] 5m8.4s INFO: Running scripts post_test 5m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_test_exceptions'] 5m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'tmp/scripts/post_test_exceptions'] 5m8.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg'] 5m9.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg'] 5m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'dpkg-divert', '--list'] 5m9.0s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64 diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64 5m9.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'dpkg-divert', '--list'] 5m9.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-get', 'clean'] 5m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg', 'apt-get', 'clean'] 5m9.1s DEBUG: Recording chroot state 5m9.9s INFO: Warning: Package purging left files on system: /etc/fonts/ owned by: fontconfig-config, fonts-urw-base35, fonts-dejavu-core, fonts-dejavu-mono /etc/fonts/conf.d/ owned by: fontconfig-config, fonts-urw-base35, fonts-dejavu-core, fonts-dejavu-mono /etc/fonts/conf.d/70-no-bitmaps-except-emoji.conf -> /usr/share/fontconfig/conf.avail/70-no-bitmaps-except-emoji.conf not owned /usr/lib/x86_64-linux-gnu/libmpi_usempi_ignore_tkr-gfortranso.40 -> libmpi_usempi_ignore_tkr-gfortran.so.40.30.0 not owned 5m10.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg/dev/shm'] 5m10.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg/dev/shm'] 5m10.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg/dev/console'] 5m10.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg/dev/console'] 5m10.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg/dev/ptmx'] 5m10.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg/dev/ptmx'] 5m10.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg/dev/pts'] 5m10.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg/dev/pts'] 5m10.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg/proc'] 5m10.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg/proc'] 5m10.5s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg'] 5m10.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpw78y0qkg'] 5m10.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpw78y0qkg 5m10.7s INFO: PASS: Upgrading between Debian distributions. 5m10.7s INFO: PASS: All tests. 5m10.7s INFO: piuparts run ends. ret=0 End: 2024-04-24 16:57:53 GMT