Start: 2022-09-06 19:56:04 GMT [stable] Package: gromacs-mpich Source: gromacs Version: 2020.6-2 Installed-Size: 18083 Maintainer: Debichem Team Architecture: amd64 Depends: mpich, libc6 (>= 2.29), libfftw3-double3 (>= 3.3.5), libfftw3-single3 (>= 3.3.5), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libhwloc15 (>= 2.4.1+dfsg), libmpich12 (>= 3.4.1-3), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.0) Recommends: gromacs Suggests: gromacs-data Description: Molecular dynamics sim, binaries for MPICH parallelization Homepage: http://www.gromacs.org/ Description-md5: befd212127fab1c214923ce24592496e Tag: devel::lang:c, devel::library, field::biology, field::chemistry, implemented-in::c, interface::commandline, role::devel-lib, role::program, scope::utility, works-with::software:package Section: science Priority: optional Filename: pool/main/g/gromacs/gromacs-mpich_2020.6-2_amd64.deb Size: 6862540 MD5sum: ec9c30827099a6b9b244a20eb70fa65c SHA256: 809747788427c22d37e72fdc962e9ebc7e764bc9667754e15757603e29278363 [sid] Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d stable -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat --apt gromacs-mpich=None 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.1.5 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --warn-on-usr-move fail --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz -d stable -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat --apt gromacs-mpich=None 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.19.0-21-amd64 #1 SMP Debian 4.19.249-2 (2022-06-30) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpd4ycf7px 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpd4ycf7px 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m2.0s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/bullseye_amd64.tar.gz'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px/proc'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px/proc'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px/dev/pts'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px/dev/pts'] 0m2.0s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px/dev/ptmx'] 0m2.0s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px/dev/ptmx'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px/dev/console'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px/dev/console'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px/dev/shm'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px/dev/shm'] 0m2.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m2.1s DEBUG: Created policy-rc.d and chmodded it. 0m2.1s DEBUG: Created resolv.conf. 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpd4ycf7px/tmp/scripts/ 0m2.1s INFO: Running scripts post_chroot_unpack 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'apt-get', 'update'] 0m3.0s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Reading package lists... 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'apt-get', 'update'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'apt-get', '-yf', 'dist-upgrade'] 0m3.4s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'apt-get', '-yf', 'dist-upgrade'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.7s DUMP: ac5481fb8b2cc7f02585af1dded702c8 - 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.7s INFO: Running scripts post_setup 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_setup_dummy_users'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_setup_dummy_users'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_setup_forbid_home'] 0m4.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_setup_forbid_home'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_setup_minimize'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_setup_minimize'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_setup_zz_backports'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_setup_zz_backports'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.9s DUMP: install ok installed adduser adduser 3.118 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u4 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.11 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u3 install ok installed libc6:amd64 libc6 2.31-13+deb11u3 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u1 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u1 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u1 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u1 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1n-0+deb11u3 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2 install ok installed libtirpc-common libtirpc-common 1.3.1-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1 install ok installed libudev1:amd64 libudev1 247.3-7 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u2 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021a-1+deb11u4 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u1 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.9s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat 0m5.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px'] 0m5.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px'] 0m5.2s INFO: Running scripts is_testable 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/is_testable_uninstallable'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/is_testable_uninstallable'] 0m5.2s INFO: Running scripts pre_test 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_test_exceptions'] 0m5.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_test_exceptions'] 0m5.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_test_root_password'] 0m5.3s DUMP: New password: Retype new password: passwd: password updated successfully 0m5.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_test_root_password'] 0m5.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'apt-cache', 'show', '--no-all-versions', 'gromacs-mpich'] 0m5.6s DUMP: Package: gromacs-mpich Source: gromacs Version: 2020.6-2 Installed-Size: 18083 Maintainer: Debichem Team Architecture: amd64 Depends: mpich, libc6 (>= 2.29), libfftw3-double3 (>= 3.3.5), libfftw3-single3 (>= 3.3.5), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libhwloc15 (>= 2.4.1+dfsg), libmpich12 (>= 3.4.1-3), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.0) Recommends: gromacs Suggests: gromacs-data Description-en: Molecular dynamics sim, binaries for MPICH parallelization GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains only the core simulation engine with parallel support using the MPICH (v3) interface. It is suitable for nodes of a processing cluster, or for multiprocessor machines. Description-md5: befd212127fab1c214923ce24592496e Homepage: http://www.gromacs.org/ Tag: devel::lang:c, devel::library, field::biology, field::chemistry, implemented-in::c, interface::commandline, role::devel-lib, role::program, scope::utility, works-with::software:package Section: science Priority: optional Filename: pool/main/g/gromacs/gromacs-mpich_2020.6-2_amd64.deb Size: 6862540 MD5sum: ec9c30827099a6b9b244a20eb70fa65c SHA256: 809747788427c22d37e72fdc962e9ebc7e764bc9667754e15757603e29278363 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'apt-cache', 'show', '--no-all-versions', 'gromacs-mpich'] 0m5.6s INFO: apt-cache knows about the following packages: gromacs-mpich 0m5.6s INFO: Running scripts pre_install 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_install_database-server'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_install_database-server'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_install_exceptions'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_install_exceptions'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_install_extras'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_install_extras'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'apt-cache', 'policy'] 0m5.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.4,o=Debian,a=stable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'apt-cache', 'policy'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'apt-cache', 'policy', 'gromacs-mpich'] 0m5.7s DUMP: gromacs-mpich: Installed: (none) Candidate: 2020.6-2 Version table: 2020.6-2 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'apt-cache', 'policy', 'gromacs-mpich'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'apt-get', '-y', 'install', 'gromacs-mpich'] 0m9.5s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: hwloc-nox libfftw3-double3 libfftw3-single3 libgfortran5 libgomp1 libhwloc15 libmpich12 libquadmath0 libslurm36 mpich Suggested packages: gromacs-data libfftw3-bin libfftw3-dev libhwloc-contrib-plugins mpich-doc Recommended packages: gromacs libhwloc-plugins libmpich-dev The following NEW packages will be installed: gromacs-mpich hwloc-nox libfftw3-double3 libfftw3-single3 libgfortran5 libgomp1 libhwloc15 libmpich12 libquadmath0 libslurm36 mpich 0 upgraded, 11 newly installed, 0 to remove and 0 not upgraded. Need to get 12.5 MB of archives. After this operation, 43.5 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 libhwloc15 amd64 2.4.1+dfsg-1 [150 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 hwloc-nox amd64 2.4.1+dfsg-1 [190 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libquadmath0 amd64 10.2.1-6 [145 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 libmpich12 amd64 3.4.1-5~deb11u1 [1987 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libslurm36 amd64 20.11.7+really20.11.4-2+deb11u1 [667 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 mpich amd64 3.4.1-5~deb11u1 [219 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 libgomp1 amd64 10.2.1-6 [99.9 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 libfftw3-double3 amd64 3.3.8-2 [733 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 libfftw3-single3 amd64 3.3.8-2 [762 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 gromacs-mpich amd64 2020.6-2 [6863 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.5 MB in 1s (10.6 MB/s) Selecting previously unselected package libhwloc15:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6663 files and directories currently installed.) Preparing to unpack .../00-libhwloc15_2.4.1+dfsg-1_amd64.deb ... Unpacking libhwloc15:amd64 (2.4.1+dfsg-1) ... Selecting previously unselected package hwloc-nox. Preparing to unpack .../01-hwloc-nox_2.4.1+dfsg-1_amd64.deb ... Unpacking hwloc-nox (2.4.1+dfsg-1) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../02-libquadmath0_10.2.1-6_amd64.deb ... Unpacking libquadmath0:amd64 (10.2.1-6) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../03-libgfortran5_10.2.1-6_amd64.deb ... Unpacking libgfortran5:amd64 (10.2.1-6) ... Selecting previously unselected package libmpich12:amd64. Preparing to unpack .../04-libmpich12_3.4.1-5~deb11u1_amd64.deb ... Unpacking libmpich12:amd64 (3.4.1-5~deb11u1) ... Selecting previously unselected package libslurm36. Preparing to unpack .../05-libslurm36_20.11.7+really20.11.4-2+deb11u1_amd64.deb ... Unpacking libslurm36 (20.11.7+really20.11.4-2+deb11u1) ... Selecting previously unselected package mpich. Preparing to unpack .../06-mpich_3.4.1-5~deb11u1_amd64.deb ... Unpacking mpich (3.4.1-5~deb11u1) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../07-libgomp1_10.2.1-6_amd64.deb ... Unpacking libgomp1:amd64 (10.2.1-6) ... Selecting previously unselected package libfftw3-double3:amd64. Preparing to unpack .../08-libfftw3-double3_3.3.8-2_amd64.deb ... Unpacking libfftw3-double3:amd64 (3.3.8-2) ... Selecting previously unselected package libfftw3-single3:amd64. Preparing to unpack .../09-libfftw3-single3_3.3.8-2_amd64.deb ... Unpacking libfftw3-single3:amd64 (3.3.8-2) ... Selecting previously unselected package gromacs-mpich. Preparing to unpack .../10-gromacs-mpich_2020.6-2_amd64.deb ... Unpacking gromacs-mpich (2020.6-2) ... Setting up libslurm36 (20.11.7+really20.11.4-2+deb11u1) ... Setting up libgomp1:amd64 (10.2.1-6) ... Setting up libquadmath0:amd64 (10.2.1-6) ... Setting up libhwloc15:amd64 (2.4.1+dfsg-1) ... Setting up libfftw3-double3:amd64 (3.3.8-2) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up libmpich12:amd64 (3.4.1-5~deb11u1) ... Setting up libfftw3-single3:amd64 (3.3.8-2) ... Setting up hwloc-nox (2.4.1+dfsg-1) ... Setting up mpich (3.4.1-5~deb11u1) ... update-alternatives: using /usr/bin/mpicc.mpich to provide /usr/bin/mpicc (mpi) in auto mode update-alternatives: using /usr/bin/mpirun.mpich to provide /usr/bin/mpirun (mpirun) in auto mode Setting up gromacs-mpich (2020.6-2) ... update-alternatives: using /usr/bin/mdrun_mpi.mpich to provide /usr/bin/mdrun_mpi (mdrun_mpi) in auto mode Processing triggers for libc-bin (2.31-13+deb11u3) ... 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'apt-get', '-y', 'install', 'gromacs-mpich'] 0m9.5s INFO: Running scripts post_install 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_install_exceptions'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_install_exceptions'] 0m9.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px'] 0m9.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px'] 0m9.9s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpd4ycf7px to sid 0m9.9s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m9.9s INFO: Running scripts pre_distupgrade 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'apt-get', 'update'] 0m14.4s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [192 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9353 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [6896 kB] Fetched 16.4 MB in 3s (4700 kB/s) Reading package lists... 0m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'apt-get', 'update'] 0m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'apt-get', '-yf', 'dist-upgrade'] 0m27.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libslurm36 Use 'sudo apt autoremove' to remove it. The following packages will be REMOVED: libsemanage1 The following NEW packages will be installed: gcc-12-base ibverbs-providers libcap2 libffi8 libibverbs1 libnl-3-200 libnl-route-3-200 libnuma1 librdmacm1 libsemanage2 libsepol2 libslurm37 libssl3 libucx0 util-linux-extra The following packages will be upgraded: adduser apt base-files base-passwd bash bsdutils coreutils dash debconf debianutils diffutils dpkg e2fsprogs findutils gcc-10-base gcc-9-base gpgv grep gzip hwloc-nox init-system-helpers libacl1 libapt-pkg6.0 libattr1 libaudit-common libaudit1 libblkid1 libbz2-1.0 libc-bin libc6 libcap-ng0 libcom-err2 libcrypt1 libdb5.3 libdebconfclient0 libext2fs2 libgcc-s1 libgcrypt20 libgfortran5 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libhogweed6 libhwloc15 libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblz4-1 liblzma5 libmount1 libmpich12 libnettle8 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpcre3 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsmartcols1 libss2 libssl1.1 libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtirpc-common libtirpc3 libudev1 libunistring2 libuuid1 libxxhash0 libzstd1 login logsave lsb-base mawk mount mpich ncurses-base ncurses-bin passwd perl-base sed sysvinit-utils tzdata util-linux zlib1g 96 upgraded, 15 newly installed, 1 to remove and 0 not upgraded. Need to get 47.7 MB of archives. After this operation, 43.1 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 base-files amd64 12.2 [70.1 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.34-7 [2766 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.34-7 [898 kB] Get:4 http://deb.debian.org/debian sid/main amd64 gcc-12-base amd64 12.2.0-1 [208 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 12.2.0-1 [50.3 kB] Get:6 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.7-0.3 [102 kB] Get:7 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2~rc2-2 [1527 kB] Get:8 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.38.1-1 [152 kB] Get:9 http://deb.debian.org/debian sid/main amd64 coreutils amd64 8.32-4.1 [2854 kB] Get:10 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.21.9 [2558 kB] Get:11 http://deb.debian.org/debian sid/main amd64 dash amd64 0.5.11+git20210903+057cd650a4ed-9 [114 kB] Get:12 http://deb.debian.org/debian sid/main amd64 diffutils amd64 1:3.8-1 [387 kB] Get:13 http://deb.debian.org/debian sid/main amd64 findutils amd64 4.9.0-3 [681 kB] Get:14 http://deb.debian.org/debian sid/main amd64 grep amd64 3.7-1 [404 kB] Get:15 http://deb.debian.org/debian sid/main amd64 gzip amd64 1.12-1 [140 kB] Get:16 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.11.1+dfsg1-2 [616 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.3+20220423-2 [351 kB] Get:18 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.3+20220423-2 [441 kB] Get:19 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.34.0-5 [1640 kB] Get:20 http://deb.debian.org/debian sid/main amd64 sed amd64 4.8-1 [316 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.38.1-1 [205 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.40-1 [259 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.4-1+b1 [92.6 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.38.1-1 [223 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.38.1-1 [164 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:3.0.7-1 [16.0 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.8.3-1+b1 [19.2 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:3.0.7-1+b1 [52.5 kB] Get:29 http://deb.debian.org/debian sid/main amd64 util-linux-extra amd64 2.38.1-1 [168 kB] Get:30 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.38.1-1 [1231 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.45-2 [82.7 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.10.1-2 [704 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 12.2.0-1 [613 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.2+dfsg-1 [275 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libbz2-1.0 amd64 1.0.8-5 [46.2 kB] Get:36 http://deb.debian.org/debian sid/main amd64 liblz4-1 amd64 1.9.4-1 [62.9 kB] Get:37 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.2.5-2.1 [168 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.44-1 [23.6 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 251.4-3 [410 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 251.4-3 [184 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.1-1 [27.6 kB] Get:42 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.2.11.dfsg-4.1 [92.7 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0 amd64 2.5.2 [1032 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.2.1+dfsg1-1 [561 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libnettle8 amd64 3.8.1-2 [288 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libhogweed6 amd64 3.8.1-2 [328 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libunistring2 amd64 1.0-1 [416 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.3-1+b1 [124 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.2-4 [24.7 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.24.1-1 [352 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.18.0-4 [55.9 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libgnutls30 amd64 3.7.7-2 [1415 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.4-1 [21.6 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.4-2 [282 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.4-1+b1 [101 kB] Get:56 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.11.1+dfsg1-2 [947 kB] Get:57 http://deb.debian.org/debian sid/main amd64 debconf all 1.5.79 [143 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.5.2-2 [131 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.28-2 [89.3 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.5.2-2 [114 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.5.2-2 [331 kB] Get:62 http://deb.debian.org/debian sid/main amd64 adduser all 3.129 [131 kB] Get:63 http://deb.debian.org/debian sid/main amd64 gpgv amd64 2.2.35-3 [660 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.5.4-1+b1 [48.8 kB] Get:65 http://deb.debian.org/debian sid/main amd64 apt amd64 2.5.2 [1501 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.264 [50.9 kB] Get:67 http://deb.debian.org/debian sid/main amd64 base-passwd amd64 3.6.0 [59.6 kB] Get:68 http://deb.debian.org/debian sid/main amd64 init-system-helpers all 1.64 [49.2 kB] Get:69 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.3+20220423-2 [282 kB] Get:70 http://deb.debian.org/debian sid/main amd64 lsb-base all 11.2 [29.1 kB] Get:71 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.04-1 [26.9 kB] Get:72 http://deb.debian.org/debian sid/main amd64 logsave amd64 1.46.5-2 [76.4 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libext2fs2 amd64 1.46.5-2 [258 kB] Get:74 http://deb.debian.org/debian sid/main amd64 e2fsprogs amd64 1.46.5-2 [622 kB] Get:75 http://deb.debian.org/debian sid/main amd64 mount amd64 2.38.1-1 [192 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libpam-runtime all 1.5.2-2 [200 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libacl1 amd64 2.3.1-1 [31.2 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libattr1 amd64 1:2.5.1-1 [21.7 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.10 [687 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libpcre3 amd64 2:8.39-14 [345 kB] Get:81 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.38.1-1 [86.1 kB] Get:82 http://deb.debian.org/debian sid/main amd64 mawk amd64 1.3.4.20200120-3.1 [119 kB] Get:83 http://deb.debian.org/debian sid/main amd64 tzdata all 2022c-1 [290 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 12.2.0-1 [145 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 12.2.0-1 [116 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 12.2.0-1 [793 kB] Get:87 http://deb.debian.org/debian sid/main amd64 gcc-10-base amd64 10.4.0-5 [207 kB] Get:88 http://deb.debian.org/debian sid/main amd64 gcc-9-base amd64 9.5.0-2 [200 kB] Get:89 http://deb.debian.org/debian sid/main amd64 libhwloc15 amd64 2.8.0-1 [158 kB] Get:90 http://deb.debian.org/debian sid/main amd64 hwloc-nox amd64 2.8.0-1 [204 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libnl-3-200 amd64 3.7.0-0.2+b1 [63.1 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libnl-route-3-200 amd64 3.7.0-0.2+b1 [185 kB] Get:93 http://deb.debian.org/debian sid/main amd64 libibverbs1 amd64 42.0-1 [61.8 kB] Get:94 http://deb.debian.org/debian sid/main amd64 ibverbs-providers amd64 42.0-1 [324 kB] Get:95 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.46.5-2 [75.7 kB] Get:96 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20-1 [166 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20-1 [363 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20-1 [65.7 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20-1 [111 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-1 [15.7 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libssl3 amd64 3.0.5-2 [2030 kB] Get:102 http://deb.debian.org/debian sid/main amd64 libslurm37 amd64 21.08.8.2-1+b1 [667 kB] Get:103 http://deb.debian.org/debian sid/main amd64 mpich amd64 4.0.2-2 [234 kB] Get:104 http://deb.debian.org/debian sid/main amd64 libnuma1 amd64 2.0.14-3 [24.4 kB] Get:105 http://deb.debian.org/debian sid/main amd64 librdmacm1 amd64 42.0-1 [69.8 kB] Get:106 http://deb.debian.org/debian sid/main amd64 libucx0 amd64 1.13.0-1 [859 kB] Get:107 http://deb.debian.org/debian sid/main amd64 libmpich12 amd64 4.0.2-2 [4933 kB] Get:108 http://deb.debian.org/debian sid/main amd64 libss2 amd64 1.46.5-2 [80.3 kB] Get:109 http://deb.debian.org/debian sid/main amd64 libssl1.1 amd64 1.1.1o-1 [1546 kB] Get:110 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.3+ds-1 [14.0 kB] Get:111 http://deb.debian.org/debian sid/main amd64 libtirpc3 amd64 1.3.3+ds-1 [85.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 47.7 MB in 1s (84.7 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6787 files and directories currently installed.) Preparing to unpack .../util-linux_2.38.1-1_amd64.deb ... Unpacking util-linux (2.38.1-1) over (2.36.1-8+deb11u1) ... dpkg: warning: unable to delete old directory '/etc/init.d': Directory not empty Selecting previously unselected package util-linux-extra. Preparing to unpack .../util-linux-extra_2.38.1-1_amd64.deb ... Unpacking util-linux-extra (2.38.1-1) ... Setting up util-linux-extra (2.38.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6796 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.45-2_amd64.deb ... Unpacking libgpg-error0:amd64 (1.45-2) over (1.38-2) ... Setting up libgpg-error0:amd64 (1.45-2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6798 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.5-2.1_amd64.deb ... Unpacking liblzma5:amd64 (5.2.5-2.1) over (5.2.5-2.1~deb11u1) ... Setting up liblzma5:amd64 (5.2.5-2.1) ... Selecting previously unselected package libcap2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6798 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.44-1_amd64.deb ... Unpacking libcap2:amd64 (1:2.44-1) ... Setting up libcap2:amd64 (1:2.44-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6804 files and directories currently installed.) Preparing to unpack .../libsystemd0_251.4-3_amd64.deb ... Unpacking libsystemd0:amd64 (251.4-3) over (247.3-7) ... Setting up libsystemd0:amd64 (251.4-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6804 files and directories currently installed.) Preparing to unpack .../libudev1_251.4-3_amd64.deb ... Unpacking libudev1:amd64 (251.4-3) over (247.3-7) ... Setting up libudev1:amd64 (251.4-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6804 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.1-1_amd64.deb ... Unpacking libxxhash0:amd64 (0.8.1-1) over (0.8.0-2) ... Setting up libxxhash0:amd64 (0.8.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6804 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-4.1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.11.dfsg-4.1) over (1:1.2.11.dfsg-2+deb11u1) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-4.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6804 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.5.2_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.5.2) over (2.2.4) ... Setting up libapt-pkg6.0:amd64 (2.5.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6804 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.2.1+dfsg1-1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.2.1+dfsg1-1) over (2:6.2.1+dfsg-1+deb11u1) ... Setting up libgmp10:amd64 (2:6.2.1+dfsg1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6804 files and directories currently installed.) Preparing to unpack .../libnettle8_3.8.1-2_amd64.deb ... Unpacking libnettle8:amd64 (3.8.1-2) over (3.7.3-1) ... Setting up libnettle8:amd64 (3.8.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6804 files and directories currently installed.) Preparing to unpack .../libhogweed6_3.8.1-2_amd64.deb ... Unpacking libhogweed6:amd64 (3.8.1-2) over (3.7.3-1) ... Setting up libhogweed6:amd64 (3.8.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6804 files and directories currently installed.) Preparing to unpack .../libunistring2_1.0-1_amd64.deb ... Unpacking libunistring2:amd64 (1.0-1) over (0.9.10-4) ... Setting up libunistring2:amd64 (1.0-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6804 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.3-1+b1_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.3-1+b1) over (2.3.0-5) ... Setting up libidn2-0:amd64 (2.3.3-1+b1) ... Selecting previously unselected package libffi8:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6806 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.2-4_amd64.deb ... Unpacking libffi8:amd64 (3.4.2-4) ... Setting up libffi8:amd64 (3.4.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6811 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.24.1-1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.24.1-1) over (0.23.22-1) ... Setting up libp11-kit0:amd64 (0.24.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6811 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.18.0-4_amd64.deb ... Unpacking libtasn1-6:amd64 (4.18.0-4) over (4.16.0-2) ... Setting up libtasn1-6:amd64 (4.18.0-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6811 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.7-2_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.7-2) over (3.7.1-5+deb11u1) ... Setting up libgnutls30:amd64 (3.7.7-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6811 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.4-1_all.deb ... Unpacking libsemanage-common (3.4-1) over (3.1-1) ... Setting up libsemanage-common (3.4-1) ... Installing new version of config file /etc/selinux/semanage.conf ... Selecting previously unselected package libsepol2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6811 files and directories currently installed.) Preparing to unpack .../libsepol2_3.4-2_amd64.deb ... Unpacking libsepol2:amd64 (3.4-2) ... Setting up libsepol2:amd64 (3.4-2) ... Selecting previously unselected package libsemanage2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6815 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.4-1+b1_amd64.deb ... Unpacking libsemanage2:amd64 (3.4-1+b1) ... Setting up libsemanage2:amd64 (3.4-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6820 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.11.1+dfsg1-2_amd64.deb ... Unpacking passwd (1:4.11.1+dfsg1-2) over (1:4.8.1-1) ... Setting up passwd (1:4.11.1+dfsg1-2) ... Installing new version of config file /etc/default/useradd ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6827 files and directories currently installed.) Removing libsemanage1:amd64 (3.1-1+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6822 files and directories currently installed.) Preparing to unpack .../debconf_1.5.79_all.deb ... Unpacking debconf (1.5.79) over (1.5.77) ... Setting up debconf (1.5.79) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6821 files and directories currently installed.) Preparing to unpack .../libpam0g_1.5.2-2_amd64.deb ... Unpacking libpam0g:amd64 (1.5.2-2) over (1.4.0-9+deb11u1) ... Setting up libpam0g:amd64 (1.5.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6821 files and directories currently installed.) Preparing to unpack .../libcrypt1_1%3a4.4.28-2_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.28-2) over (1:4.4.18-4) ... Setting up libcrypt1:amd64 (1:4.4.28-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6821 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.2-2_amd64.deb ... Unpacking libpam-modules-bin (1.5.2-2) over (1.4.0-9+deb11u1) ... Setting up libpam-modules-bin (1.5.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6828 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.2-2_amd64.deb ... Unpacking libpam-modules:amd64 (1.5.2-2) over (1.4.0-9+deb11u1) ... Setting up libpam-modules:amd64 (1.5.2-2) ... Installing new version of config file /etc/security/limits.conf ... Installing new version of config file /etc/security/sepermit.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6829 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.129_all.deb ... moving unchanged adduser.conf to adduser.conf.update-old. New dpkg-conffile will come from the package. Unpacking adduser (3.129) over (3.118) ... Setting up adduser (3.129) ... Installing new version of config file /etc/deluser.conf ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6792 files and directories currently installed.) Preparing to unpack .../libuuid1_2.38.1-1_amd64.deb ... Unpacking libuuid1:amd64 (2.38.1-1) over (2.36.1-8+deb11u1) ... Setting up libuuid1:amd64 (2.38.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6793 files and directories currently installed.) Preparing to unpack .../00-mawk_1.3.4.20200120-3.1_amd64.deb ... Unpacking mawk (1.3.4.20200120-3.1) over (1.3.4.20200120-2) ... Preparing to unpack .../01-tzdata_2022c-1_all.deb ... Unpacking tzdata (2022c-1) over (2021a-1+deb11u4) ... Preparing to unpack .../02-libquadmath0_12.2.0-1_amd64.deb ... Unpacking libquadmath0:amd64 (12.2.0-1) over (10.2.1-6) ... 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Selecting previously unselected package libucx0:amd64. Preparing to unpack .../24-libucx0_1.13.0-1_amd64.deb ... Unpacking libucx0:amd64 (1.13.0-1) ... Preparing to unpack .../25-libmpich12_4.0.2-2_amd64.deb ... Unpacking libmpich12:amd64 (4.0.2-2) over (3.4.1-5~deb11u1) ... Preparing to unpack .../26-libss2_1.46.5-2_amd64.deb ... Unpacking libss2:amd64 (1.46.5-2) over (1.46.2-2) ... Preparing to unpack .../27-libssl1.1_1.1.1o-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1o-1) over (1.1.1n-0+deb11u3) ... Preparing to unpack .../28-libtirpc-common_1.3.3+ds-1_all.deb ... Unpacking libtirpc-common (1.3.3+ds-1) over (1.3.1-1) ... Preparing to unpack .../29-libtirpc3_1.3.3+ds-1_amd64.deb ... Unpacking libtirpc3:amd64 (1.3.3+ds-1) over (1.3.1-1) ... Setting up libkeyutils1:amd64 (1.6.3-1) ... Setting up libslurm37 (21.08.8.2-1+b1) ... Setting up libssl1.1:amd64 (1.1.1o-1) ... Setting up libtirpc-common (1.3.3+ds-1) ... Setting up libssl3:amd64 (3.0.5-2) ... Setting up libcom-err2:amd64 (1.46.5-2) ... Setting up libgomp1:amd64 (12.2.0-1) ... Setting up libkrb5support0:amd64 (1.20-1) ... Setting up tzdata (2022c-1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Sep 6 19:56:30 UTC 2022. Universal Time is now: Tue Sep 6 19:56:30 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up gcc-10-base:amd64 (10.4.0-5) ... Setting up libquadmath0:amd64 (12.2.0-1) ... Setting up libhwloc15:amd64 (2.8.0-1) ... Setting up libss2:amd64 (1.46.5-2) ... Setting up util-linux (2.38.1-1) ... Setting up libk5crypto3:amd64 (1.20-1) ... Setting up logsave (1.46.5-2) ... Setting up libgfortran5:amd64 (12.2.0-1) ... Setting up libnuma1:amd64 (2.0.14-3) ... Setting up mount (2.38.1-1) ... Setting up libnl-3-200:amd64 (3.7.0-0.2+b1) ... Setting up mawk (1.3.4.20200120-3.1) ... Setting up libkrb5-3:amd64 (1.20-1) ... Setting up gcc-9-base:amd64 (9.5.0-2) ... Setting up hwloc-nox (2.8.0-1) ... Setting up e2fsprogs (1.46.5-2) ... Installing new version of config file /etc/mke2fs.conf ... Setting up libnl-route-3-200:amd64 (3.7.0-0.2+b1) ... Setting up libgssapi-krb5-2:amd64 (1.20-1) ... Setting up libtirpc3:amd64 (1.3.3+ds-1) ... Setting up libibverbs1:amd64 (42.0-1) ... Setting up ibverbs-providers:amd64 (42.0-1) ... Setting up librdmacm1:amd64 (42.0-1) ... Setting up libucx0:amd64 (1.13.0-1) ... Setting up libmpich12:amd64 (4.0.2-2) ... Setting up mpich (4.0.2-2) ... Processing triggers for debianutils (5.7-0.3) ... Processing triggers for libc-bin (2.34-7) ... 0m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'apt-get', '-yf', 'dist-upgrade'] 0m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m28.1s DUMP: 5ee7095931aca103c7f8f63d6ac66b58 - 0m28.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m28.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'apt-cache', 'show', '--no-all-versions', 'gromacs-mpich'] 0m28.4s DUMP: Package: gromacs-mpich Status: install ok installed Priority: optional Section: science Installed-Size: 18083 Maintainer: Debichem Team Architecture: amd64 Source: gromacs Version: 2020.6-2 Depends: mpich, libc6 (>= 2.29), libfftw3-double3 (>= 3.3.5), libfftw3-single3 (>= 3.3.5), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libhwloc15 (>= 2.4.1+dfsg), libmpich12 (>= 3.4.1-3), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.0) Recommends: gromacs Suggests: gromacs-data Description: Molecular dynamics sim, binaries for MPICH parallelization GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains only the core simulation engine with parallel support using the MPICH (v3) interface. It is suitable for nodes of a processing cluster, or for multiprocessor machines. Description-md5: befd212127fab1c214923ce24592496e Homepage: http://www.gromacs.org/ 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'apt-cache', 'show', '--no-all-versions', 'gromacs-mpich'] 0m28.4s INFO: apt-cache does not know about any of the requested packages 0m28.4s INFO: Running scripts post_distupgrade 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_distupgrade_exceptions'] 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_distupgrade_exceptions'] 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m28.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_distupgrade_zz_backports'] 0m28.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_distupgrade_zz_backports'] 0m28.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px'] 0m28.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px'] 0m28.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px'] 0m29.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px'] 0m29.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px'] 0m29.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px'] 0m29.3s DEBUG: No file moved between /{bin|sbin|lib*} and /usr/{bin|sbin|lib*}. 0m29.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', '-ac', '--ignore-obsolete'] 0m30.5s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', '-ac', '--ignore-obsolete'] 0m30.5s INFO: Running scripts pre_remove 0m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m30.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m30.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m31.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m31.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_remove_exceptions'] 0m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/pre_remove_exceptions'] 0m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m31.4s DUMP: install ok installed adduser adduser 3.129 install ok installed apt apt 2.5.2 install ok installed base-files base-files 12.2 install ok installed base-passwd base-passwd 3.6.0 install ok installed bash bash 5.2~rc2-2 install ok installed bsdutils bsdutils 1:2.38.1-1 install ok installed coreutils coreutils 8.32-4.1 install ok installed dash dash 0.5.11+git20210903+057cd650a4ed-9 install ok installed debconf debconf 1.5.79 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1 install ok installed debianutils debianutils 5.7-0.3 install ok installed diffutils diffutils 1:3.8-1 install ok installed dpkg dpkg 1.21.9 install ok installed e2fsprogs e2fsprogs 1.46.5-2 install ok installed findutils findutils 4.9.0-3 install ok installed gcc-10-base:amd64 gcc-10-base 10.4.0-5 install ok installed gcc-12-base:amd64 gcc-12-base 12.2.0-1 install ok installed gcc-9-base:amd64 gcc-9-base 9.5.0-2 install ok installed gpgv gpgv 2.2.35-3 install ok installed grep grep 3.7-1 install ok installed gromacs-mpich gromacs-mpich 2020.6-2 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23 install ok installed hwloc-nox hwloc-nox 2.8.0-1 install ok installed ibverbs-providers:amd64 ibverbs-providers 42.0-1 install ok installed init-system-helpers init-system-helpers 1.64 install ok installed libacl1:amd64 libacl1 2.3.1-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.5.2 install ok installed libattr1:amd64 libattr1 1:2.5.1-1 install ok installed libaudit-common libaudit-common 1:3.0.7-1 install ok installed libaudit1:amd64 libaudit1 1:3.0.7-1+b1 install ok installed libblkid1:amd64 libblkid1 2.38.1-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5 install ok installed libc-bin libc-bin 2.34-7 install ok installed libc6:amd64 libc6 2.34-7 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.3-1+b1 install ok installed libcap2:amd64 libcap2 1:2.44-1 install ok installed libcom-err2:amd64 libcom-err2 1.46.5-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.28-2 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.10 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.264 install ok installed libext2fs2:amd64 libext2fs2 1.46.5-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libffi8:amd64 libffi8 3.4.2-4 install ok installed libfftw3-double3:amd64 libfftw3-double3 3.3.8-2 install ok installed libfftw3-single3:amd64 libfftw3-single3 3.3.8-2 install ok installed libgcc-s1:amd64 libgcc-s1 12.2.0-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.1-2 install ok installed libgfortran5:amd64 libgfortran5 12.2.0-1 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg1-1 install ok installed libgnutls30:amd64 libgnutls30 3.7.7-2 install ok installed libgomp1:amd64 libgomp1 12.2.0-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.45-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20-1 install ok installed libhogweed6:amd64 libhogweed6 3.8.1-2 install ok installed libhwloc15:amd64 libhwloc15 2.8.0-1 install ok installed libibverbs1:amd64 libibverbs1 42.0-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.3-1+b1 install ok installed libk5crypto3:amd64 libk5crypto3 1.20-1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-1 install ok installed libkrb5-3:amd64 libkrb5-3 1.20-1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20-1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1 install ok installed libmount1:amd64 libmount1 2.38.1-1 install ok installed libmpich12:amd64 libmpich12 4.0.2-2 install ok installed libnettle8:amd64 libnettle8 3.8.1-2 install ok installed libnl-3-200:amd64 libnl-3-200 3.7.0-0.2+b1 install ok installed libnl-route-3-200:amd64 libnl-route-3-200 3.7.0-0.2+b1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libnuma1:amd64 libnuma1 2.0.14-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.24.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-2 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-2 install ok installed libpam-runtime libpam-runtime 1.5.2-2 install ok installed libpam0g:amd64 libpam0g 1.5.2-2 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.40-1 install ok installed libpcre3:amd64 libpcre3 2:8.39-14 install ok installed libquadmath0:amd64 libquadmath0 12.2.0-1 install ok installed librdmacm1:amd64 librdmacm1 42.0-1 install ok installed libseccomp2:amd64 libseccomp2 2.5.4-1+b1 install ok installed libselinux1:amd64 libselinux1 3.4-1+b1 install ok installed libsemanage-common libsemanage-common 3.4-1 install ok installed libsemanage2:amd64 libsemanage2 3.4-1+b1 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsepol2:amd64 libsepol2 3.4-2 install ok installed libslurm36 libslurm36 20.11.7+really20.11.4-2+deb11u1 install ok installed libslurm37 libslurm37 21.08.8.2-1+b1 install ok installed libsmartcols1:amd64 libsmartcols1 2.38.1-1 install ok installed libss2:amd64 libss2 1.46.5-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1o-1 install ok installed libssl3:amd64 libssl3 3.0.5-2 install ok installed libstdc++6:amd64 libstdc++6 12.2.0-1 install ok installed libsystemd0:amd64 libsystemd0 251.4-3 install ok installed libtasn1-6:amd64 libtasn1-6 4.18.0-4 install ok installed libtinfo6:amd64 libtinfo6 6.3+20220423-2 install ok installed libtirpc-common libtirpc-common 1.3.3+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.3+ds-1 install ok installed libucx0:amd64 libucx0 1.13.0-1 install ok installed libudev1:amd64 libudev1 251.4-3 install ok installed libunistring2:amd64 libunistring2 1.0-1 install ok installed libuuid1:amd64 libuuid1 2.38.1-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.1-1 install ok installed libzstd1:amd64 libzstd1 1.5.2+dfsg-1 install ok installed login login 1:4.11.1+dfsg1-2 install ok installed logsave logsave 1.46.5-2 install ok installed lsb-base lsb-base 11.2 install ok installed mawk mawk 1.3.4.20200120-3.1 install ok installed mount mount 2.38.1-1 install ok installed mpich mpich 4.0.2-2 install ok installed ncurses-base ncurses-base 6.3+20220423-2 install ok installed ncurses-bin ncurses-bin 6.3+20220423-2 install ok installed passwd passwd 1:4.11.1+dfsg1-2 install ok installed perl-base perl-base 5.34.0-5 install ok installed sed sed 4.8-1 install ok installed sysvinit-utils sysvinit-utils 3.04-1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2022c-1 install ok installed util-linux util-linux 2.38.1-1 install ok installed util-linux-extra util-linux-extra 2.38.1-1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-4.1 0m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'apt-get', 'remove', 'hwloc-nox', 'ibverbs-providers:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libmpich12:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libslurm36', 'libslurm37', 'libucx0:amd64', 'mpich', 'gromacs-mpich'] 0m32.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: gromacs-mpich hwloc-nox ibverbs-providers libfftw3-double3 libfftw3-single3 libgfortran5 libgomp1 libhwloc15 libibverbs1 libmpich12 libnl-3-200 libnl-route-3-200 libnuma1 libquadmath0 librdmacm1 libslurm36 libslurm37 libucx0 mpich 0 upgraded, 0 newly installed, 19 to remove and 0 not upgraded. After this operation, 76.7 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6924 files and directories currently installed.) Removing gromacs-mpich (2020.6-2) ... Removing mpich (4.0.2-2) ... Removing hwloc-nox (2.8.0-1) ... Removing libmpich12:amd64 (4.0.2-2) ... Removing libucx0:amd64 (1.13.0-1) ... Removing ibverbs-providers:amd64 (42.0-1) ... Removing libfftw3-double3:amd64 (3.3.8-2) ... Removing libfftw3-single3:amd64 (3.3.8-2) ... Removing libgfortran5:amd64 (12.2.0-1) ... Removing libgomp1:amd64 (12.2.0-1) ... Removing libhwloc15:amd64 (2.8.0-1) ... Removing librdmacm1:amd64 (42.0-1) ... Removing libibverbs1:amd64 (42.0-1) ... Removing libnl-route-3-200:amd64 (3.7.0-0.2+b1) ... Removing libnl-3-200:amd64 (3.7.0-0.2+b1) ... Removing libnuma1:amd64 (2.0.14-3) ... Removing libquadmath0:amd64 (12.2.0-1) ... Removing libslurm36 (20.11.7+really20.11.4-2+deb11u1) ... Removing libslurm37 (21.08.8.2-1+b1) ... Processing triggers for libc-bin (2.34-7) ... 0m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'apt-get', 'remove', 'hwloc-nox', 'ibverbs-providers:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libmpich12:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libslurm36', 'libslurm37', 'libucx0:amd64', 'mpich', 'gromacs-mpich'] 0m32.1s INFO: Running scripts post_remove 0m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_remove_exceptions'] 0m32.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_remove_exceptions'] 0m32.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'dpkg', '--purge', 'hwloc-nox', 'ibverbs-providers:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libmpich12:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libslurm36', 'libslurm37', 'libucx0:amd64', 'mpich'] 0m32.2s DUMP: dpkg: warning: ignoring request to remove hwloc-nox which isn't installed (Reading database ... 6708 files and directories currently installed.) Purging configuration files for ibverbs-providers:amd64 (42.0-1) ... dpkg: warning: ignoring request to remove libfftw3-double3 which isn't installed dpkg: warning: ignoring request to remove libfftw3-single3 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libibverbs1 which isn't installed dpkg: warning: ignoring request to remove libmpich12 which isn't installed Purging configuration files for libnl-3-200:amd64 (3.7.0-0.2+b1) ... dpkg: warning: ignoring request to remove libnl-route-3-200 which isn't installed dpkg: warning: ignoring request to remove libnuma1 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove librdmacm1 which isn't installed dpkg: warning: ignoring request to remove libslurm36 which isn't installed dpkg: warning: ignoring request to remove libslurm37 which isn't installed dpkg: warning: ignoring request to remove libucx0 which isn't installed dpkg: warning: ignoring request to remove mpich which isn't installed 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'dpkg', '--purge', 'hwloc-nox', 'ibverbs-providers:amd64', 'libfftw3-double3:amd64', 'libfftw3-single3:amd64', 'libgfortran5:amd64', 'libgomp1:amd64', 'libhwloc15:amd64', 'libibverbs1:amd64', 'libmpich12:amd64', 'libnl-3-200:amd64', 'libnl-route-3-200:amd64', 'libnuma1:amd64', 'libquadmath0:amd64', 'librdmacm1:amd64', 'libslurm36', 'libslurm37', 'libucx0:amd64', 'mpich'] 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'dpkg', '--purge', 'gromacs-mpich'] 0m32.2s DUMP: dpkg: warning: ignoring request to remove gromacs-mpich which isn't installed 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'dpkg', '--purge', 'gromacs-mpich'] 0m32.2s INFO: Running scripts post_purge 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_purge_exceptions'] 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_purge_exceptions'] 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'dpkg', '--purge', '--pending'] 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'dpkg', '--purge', '--pending'] 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'dpkg', '--remove', '--pending'] 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'dpkg', '--remove', '--pending'] 0m32.2s INFO: Running scripts post_test 0m32.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_test_exceptions'] 0m32.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'tmp/scripts/post_test_exceptions'] 0m32.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px'] 0m32.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px'] 0m32.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'dpkg-divert', '--list'] 0m32.4s DUMP: local diversion of /bin/sync to /bin/sync.distrib diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m32.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'dpkg-divert', '--list'] 0m32.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'apt-get', 'clean'] 0m32.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px', 'apt-get', 'clean'] 0m32.5s DEBUG: Recording chroot state 0m33.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px/dev/shm'] 0m33.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px/dev/shm'] 0m33.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px/dev/console'] 0m33.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px/dev/console'] 0m33.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px/dev/ptmx'] 0m33.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px/dev/ptmx'] 0m33.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px/dev/pts'] 0m33.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px/dev/pts'] 0m33.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px/proc'] 0m33.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px/proc'] 0m33.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px'] 0m33.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpd4ycf7px'] 0m33.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpd4ycf7px 0m33.3s INFO: PASS: Upgrading between Debian distributions. 0m33.3s INFO: PASS: All tests. 0m33.3s INFO: piuparts run ends. ret=0 End: 2022-09-06 19:56:37 GMT