Start: 2025-09-30 21:57:53 GMT [stable] Package: igblast Source: ncbi-igblast Version: 1.20.0-2 Installed-Size: 69530 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbz2-1.0, libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libncbi-vdb3 (>= 3.0.9+dfsg), libstdc++6 (>= 14), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.2.11.dfsg) Recommends: ncbi-blast+ Description: Immunoglobulin and T cell receptor variable domain sequence analysis Homepage: https://ncbi.github.io/igblast/ Description-md5: 2962314d8994f10816be6f57d21f8ffc Section: science Priority: optional Filename: pool/main/n/ncbi-igblast/igblast_1.20.0-2_amd64.deb Size: 18843528 MD5sum: 1e2ed825eecc01062da8cd1a08cb4b49 SHA256: 127c1aa5bc0939ae6af5ecf29368b02882fb33489285b08c86b50f8698be93c1 [sid] Package: igblast Source: ncbi-igblast Version: 1.20.0-3 Installed-Size: 69918 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbz2-1.0, libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgomp1 (>= 6), liblmdb0 (>= 0.9.7), libncbi-vdb3 (>= 3.2.1+dfsg), libstdc++6 (>= 14), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.2.11.dfsg) Recommends: ncbi-blast+ Description: Immunoglobulin and T cell receptor variable domain sequence analysis Homepage: https://ncbi.github.io/igblast/ Description-md5: 2962314d8994f10816be6f57d21f8ffc Section: science Priority: optional Filename: pool/main/n/ncbi-igblast/igblast_1.20.0-3_amd64.deb Size: 19000740 MD5sum: 1fb130ce12045b1c285350c4980ad5f1 SHA256: fb04d32538777cd9ff72d2ba64a0dc83a2e6a0108e2316ae4c781f5105468be2 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d stable -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat --apt igblast=1.20.0-3 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211856~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d stable -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat --apt igblast=1.20.0-3 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 6.1.0-40-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.153-1 (2025-09-20) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpg4hekpln 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpg4hekpln 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpg4hekpln/proc'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpg4hekpln/proc'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpg4hekpln/dev/pts'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpg4hekpln/dev/pts'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpg4hekpln/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpg4hekpln/dev/ptmx'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpg4hekpln/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpg4hekpln/dev/ptmx'] 0m0.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpg4hekpln/dev/console'] 0m0.2s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmpg4hekpln/dev/console'] 0m0.2s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpg4hekpln/dev/shm'] 0m0.2s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpg4hekpln/dev/shm'] 0m0.2s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.2s DEBUG: Created policy-rc.d and chmodded it. 0m0.2s DEBUG: Created resolv.conf. 0m0.2s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpg4hekpln/tmp/scripts/ 0m0.2s INFO: Running scripts post_chroot_unpack 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-get', 'update'] 0m0.7s DUMP: Hit:1 http://deb.debian.org/debian trixie InRelease Reading package lists... 0m0.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-get', 'update'] 0m0.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-get', '-yf', 'dist-upgrade'] 0m1.0s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m1.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-get', '-yf', 'dist-upgrade'] 0m1.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.2s DUMP: cc6be03135582e5dd4c9ee869186ad39 - 0m1.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m1.2s INFO: Running scripts post_setup 0m1.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_setup_dummy_users'] 0m1.6s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_setup_dummy_users'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_setup_forbid_home'] 0m1.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_setup_forbid_home'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_setup_force-unsafe-io'] 0m1.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_setup_force-unsafe-io'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_setup_minimize'] 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_setup_minimize'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_setup_squeeze-backports'] 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_setup_squeeze-backports'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_setup_zz_backports'] 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_setup_zz_backports'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m1.7s DUMP: install ok installed apt apt 3.0.3 install ok installed base-files base-files 13.8+deb13u1 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2+b5 install ok installed bsdutils bsdutils 1:2.41-5 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69~deb13u1 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.3 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.41-5 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-5 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41-5 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1~deb13u1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41-5 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-7 install ok installed libssl3t64:amd64 libssl3t64 3.5.1-1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.8-1~deb13u1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.8-1~deb13u1 install ok installed libuuid1:amd64 libuuid1 2.41-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.41-5 install ok installed login.defs login.defs 1:4.17.4-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41-5 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.1-1 install ok installed passwd passwd 1:4.17.4-2 install ok installed perl-base perl-base 5.40.1-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-4+deb13u1 install ok installed util-linux util-linux 2.41-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m1.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat 0m1.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg4hekpln'] 0m1.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg4hekpln'] 0m1.8s INFO: Running scripts is_testable 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/is_testable_uninstallable'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/is_testable_uninstallable'] 0m1.9s INFO: Running scripts pre_test 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_test_exceptions'] 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_test_exceptions'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_test_root_password'] 0m1.9s DUMP: New password: Retype new password: passwd: password updated successfully 0m1.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_test_root_password'] 0m1.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-cache', 'show', '--no-all-versions', 'igblast'] 0m2.0s DUMP: Package: igblast Source: ncbi-igblast Version: 1.20.0-2 Installed-Size: 69530 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbz2-1.0, libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libncbi-vdb3 (>= 3.0.9+dfsg), libstdc++6 (>= 14), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.2.11.dfsg) Recommends: ncbi-blast+ Description-en: Immunoglobulin and T cell receptor variable domain sequence analysis IgBLAST allows users to view the matches to the germline V, D, and J genes, details at rearrangement junctions, the delineation of IG V domain framework regions, and complementarity determining regions. IgBLAST has the capability to analyse nucleotide and protein sequences, and can process sequences in batches. Furthermore, IgBLAST allows searches against the germline gene databases and other sequence databases simultaneously to minimize the chance of missing possibly the best matching germline V gene. Description-md5: 2962314d8994f10816be6f57d21f8ffc Homepage: https://ncbi.github.io/igblast/ Section: science Priority: optional Filename: pool/main/n/ncbi-igblast/igblast_1.20.0-2_amd64.deb Size: 18843528 MD5sum: 1e2ed825eecc01062da8cd1a08cb4b49 SHA256: 127c1aa5bc0939ae6af5ecf29368b02882fb33489285b08c86b50f8698be93c1 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-cache', 'show', '--no-all-versions', 'igblast'] 0m2.0s INFO: apt-cache knows about the following packages: igblast 0m2.0s INFO: Running scripts pre_install 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_database-server'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_database-server'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_exceptions'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_exceptions'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_extras'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_extras'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_foreign_architecture'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_foreign_architecture'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-cache', 'policy'] 0m2.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release v=13.1,o=Debian,a=stable,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-cache', 'policy'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-cache', 'policy', 'igblast'] 0m2.0s DUMP: igblast: Installed: (none) Candidate: 1.20.0-2 Version table: 1.20.0-2 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m2.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-cache', 'policy', 'igblast'] 0m2.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-get', '-y', 'install', 'igblast'] 0m4.1s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libgomp1 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-vdb3 ncbi-vdb-data Recommended packages: ncbi-blast+ python3:any The following NEW packages will be installed: igblast libgomp1 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-vdb3 ncbi-vdb-data 0 upgraded, 7 newly installed, 0 to remove and 0 not upgraded. Need to get 21.0 MB of archives. After this operation, 77.1 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libgomp1 amd64 14.2.0-19 [137 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libmbedcrypto16 amd64 3.6.4-2 [360 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 libmbedx509-7 amd64 3.6.4-2 [151 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 libmbedtls21 amd64 3.6.4-2 [242 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 libncbi-vdb3 amd64 3.2.1+dfsg-2 [1164 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 igblast amd64 1.20.0-2 [18.8 MB] Fetched 21.0 MB in 1s (17.1 MB/s) Selecting previously unselected package libgomp1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4939 files and directories currently installed.) Preparing to unpack .../0-libgomp1_14.2.0-19_amd64.deb ... Unpacking libgomp1:amd64 (14.2.0-19) ... Selecting previously unselected package libmbedcrypto16:amd64. Preparing to unpack .../1-libmbedcrypto16_3.6.4-2_amd64.deb ... Unpacking libmbedcrypto16:amd64 (3.6.4-2) ... Selecting previously unselected package libmbedx509-7:amd64. Preparing to unpack .../2-libmbedx509-7_3.6.4-2_amd64.deb ... Unpacking libmbedx509-7:amd64 (3.6.4-2) ... Selecting previously unselected package libmbedtls21:amd64. Preparing to unpack .../3-libmbedtls21_3.6.4-2_amd64.deb ... Unpacking libmbedtls21:amd64 (3.6.4-2) ... Selecting previously unselected package ncbi-vdb-data. Preparing to unpack .../4-ncbi-vdb-data_3.2.1+dfsg-2_all.deb ... Unpacking ncbi-vdb-data (3.2.1+dfsg-2) ... Selecting previously unselected package libncbi-vdb3:amd64. Preparing to unpack .../5-libncbi-vdb3_3.2.1+dfsg-2_amd64.deb ... Unpacking libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Selecting previously unselected package igblast. Preparing to unpack .../6-igblast_1.20.0-2_amd64.deb ... Unpacking igblast (1.20.0-2) ... Setting up libgomp1:amd64 (14.2.0-19) ... Setting up ncbi-vdb-data (3.2.1+dfsg-2) ... Setting up libmbedcrypto16:amd64 (3.6.4-2) ... Setting up libmbedx509-7:amd64 (3.6.4-2) ... Setting up libmbedtls21:amd64 (3.6.4-2) ... Setting up libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Setting up igblast (1.20.0-2) ... Processing triggers for libc-bin (2.41-12) ... 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-get', '-y', 'install', 'igblast'] 0m4.1s INFO: Running scripts post_install 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_install_exceptions'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_install_exceptions'] 0m4.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg4hekpln'] 0m4.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg4hekpln'] 0m4.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpg4hekpln to sid 0m4.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m4.3s INFO: Running scripts pre_distupgrade 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_distupgrade_exceptions'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_distupgrade_exceptions'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m4.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m4.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-get', 'update'] 0m6.4s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [207 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.2 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7438 kB] Fetched 17.8 MB in 2s (11.4 MB/s) Reading package lists... 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-get', 'update'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-get', '-yf', 'dist-upgrade'] 0m10.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: gcc-15-base liblmdb0 The following packages will be upgraded: apt base-files bash bsdutils gcc-14-base grep igblast init-system-helpers libapt-pkg7.0 libaudit-common libaudit1 libblkid1 libgcc-s1 libgmp10 libgomp1 libhogweed6t64 liblastlog2-2 liblzma5 libmount1 libnettle8t64 libpcre2-8-0 libsmartcols1 libsqlite3-0 libssl3t64 libstdc++6 libsystemd0 libudev1 libuuid1 libzstd1 login login.defs mount openssl-provider-legacy passwd tzdata util-linux 36 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 35.3 MB of archives. After this operation, 649 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 base-files amd64 14 [72.9 kB] Get:2 http://deb.debian.org/debian sid/main amd64 bash amd64 5.3-1 [1556 kB] Get:3 http://deb.debian.org/debian sid/main amd64 grep amd64 3.12-1 [443 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.41.2-3 [38.4 kB] Get:5 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.41.2-3 [93.5 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.41.2-3 [174 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.41.2-3 [211 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.41.2-3 [145 kB] Get:9 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.41.2-3 [1164 kB] Get:10 http://deb.debian.org/debian sid/main amd64 mount amd64 2.41.2-3 [163 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 258-1 [466 kB] Get:12 http://deb.debian.org/debian sid/main amd64 gcc-15-base amd64 15.2.0-4 [52.8 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 15.2.0-4 [71.7 kB] Get:14 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.8.1-1.1 [316 kB] Get:15 http://deb.debian.org/debian sid/main amd64 openssl-provider-legacy amd64 3.5.3-1 [308 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.7+dfsg-1.1 [320 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.5.3-1 [2445 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 15.2.0-4 [738 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 258-1 [156 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libapt-pkg7.0 amd64 3.1.6 [1205 kB] Get:21 http://deb.debian.org/debian sid/main amd64 apt amd64 3.1.6 [1478 kB] Get:22 http://deb.debian.org/debian sid/main amd64 init-system-helpers all 1.69 [39.3 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:4.1.2-1 [14.3 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.1.2-1 [60.4 kB] Get:25 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.41.2-3 [105 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5 [574 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libnettle8t64 amd64 3.10.2-1 [307 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libhogweed6t64 amd64 3.10.2-1 [336 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-8 [968 kB] Get:30 http://deb.debian.org/debian sid/main amd64 liblastlog2-2 amd64 2.41.2-3 [29.3 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.46-1 [298 kB] Get:32 http://deb.debian.org/debian sid/main amd64 login.defs all 1:4.18.0-1 [211 kB] Get:33 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.18.0-1 [1284 kB] Get:34 http://deb.debian.org/debian sid/main amd64 tzdata all 2025b-5 [260 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 15.2.0-4 [140 kB] Get:36 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.3.0-8 [52.1 kB] Get:37 http://deb.debian.org/debian sid/main amd64 liblmdb0 amd64 0.9.31-1+b2 [45.2 kB] Get:38 http://deb.debian.org/debian sid/main amd64 igblast amd64 1.20.0-3 [19.0 MB] Preconfiguring packages ... Fetched 35.3 MB in 1s (32.7 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5158 files and directories currently installed.) Preparing to unpack .../base-files_14_amd64.deb ... Unpacking base-files (14) over (13.8+deb13u1) ... Setting up base-files (14) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5157 files and directories currently installed.) Preparing to unpack .../archives/bash_5.3-1_amd64.deb ... Unpacking bash (5.3-1) over (5.2.37-2+b5) ... Setting up bash (5.3-1) ... Installing new version of config file /etc/bash.bashrc ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5158 files and directories currently installed.) Preparing to unpack .../archives/grep_3.12-1_amd64.deb ... Unpacking grep (3.12-1) over (3.11-4) ... Setting up grep (3.12-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5158 files and directories currently installed.) Preparing to unpack .../libuuid1_2.41.2-3_amd64.deb ... Unpacking libuuid1:amd64 (2.41.2-3) over (2.41-5) ... Setting up libuuid1:amd64 (2.41.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5158 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.41.2-3_amd64.deb ... Unpacking bsdutils (1:2.41.2-3) over (1:2.41-5) ... Setting up bsdutils (1:2.41.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5155 files and directories currently installed.) Preparing to unpack .../libblkid1_2.41.2-3_amd64.deb ... Unpacking libblkid1:amd64 (2.41.2-3) over (2.41-5) ... Setting up libblkid1:amd64 (2.41.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5155 files and directories currently installed.) Preparing to unpack .../libmount1_2.41.2-3_amd64.deb ... Unpacking libmount1:amd64 (2.41.2-3) over (2.41-5) ... Setting up libmount1:amd64 (2.41.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5155 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.41.2-3_amd64.deb ... Unpacking libsmartcols1:amd64 (2.41.2-3) over (2.41-5) ... Setting up libsmartcols1:amd64 (2.41.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5155 files and directories currently installed.) Preparing to unpack .../util-linux_2.41.2-3_amd64.deb ... Unpacking util-linux (2.41.2-3) over (2.41-5) ... Setting up util-linux (2.41.2-3) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5131 files and directories currently installed.) Preparing to unpack .../libgcc-s1_15.2.0-4_amd64.deb ... Unpacking libgcc-s1:amd64 (15.2.0-4) over (14.2.0-19) ... Setting up libgcc-s1:amd64 (15.2.0-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5131 files and directories currently installed.) Preparing to unpack .../liblzma5_5.8.1-1.1_amd64.deb ... Unpacking liblzma5:amd64 (5.8.1-1.1) over (5.8.1-1) ... Setting up liblzma5:amd64 (5.8.1-1.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5131 files and directories currently installed.) Preparing to unpack .../openssl-provider-legacy_3.5.3-1_amd64.deb ... Unpacking openssl-provider-legacy (3.5.3-1) over (3.5.1-1) ... Setting up openssl-provider-legacy (3.5.3-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5131 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.5.3-1_amd64.deb ... Unpacking libssl3t64:amd64 (3.5.3-1) over (3.5.1-1) ... Setting up libssl3t64:amd64 (3.5.3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5131 files and directories currently installed.) Preparing to unpack .../libstdc++6_15.2.0-4_amd64.deb ... Unpacking libstdc++6:amd64 (15.2.0-4) over (14.2.0-19) ... Setting up libstdc++6:amd64 (15.2.0-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5131 files and directories currently installed.) Preparing to unpack .../libudev1_258-1_amd64.deb ... Unpacking libudev1:amd64 (258-1) over (257.8-1~deb13u1) ... Setting up libudev1:amd64 (258-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5131 files and directories currently installed.) Preparing to unpack .../libapt-pkg7.0_3.1.6_amd64.deb ... Unpacking libapt-pkg7.0:amd64 (3.1.6) over (3.0.3) ... Setting up libapt-pkg7.0:amd64 (3.1.6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5131 files and directories currently installed.) Preparing to unpack .../archives/apt_3.1.6_amd64.deb ... Unpacking apt (3.1.6) over (3.0.3) ... Setting up apt (3.1.6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5129 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.69_all.deb ... Unpacking init-system-helpers (1.69) over (1.69~deb13u1) ... Setting up init-system-helpers (1.69) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5129 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a4.1.2-1_all.deb ... Unpacking libaudit-common (1:4.1.2-1) over (1:4.0.2-2) ... Setting up libaudit-common (1:4.1.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5129 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.1.2-1_amd64.deb ... Unpacking libaudit1:amd64 (1:4.1.2-1) over (1:4.0.2-2+b2) ... Setting up libaudit1:amd64 (1:4.1.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5128 files and directories currently installed.) Preparing to unpack .../login_1%3a4.16.0-2+really2.41.2-3_amd64.deb ... Unpacking login (1:4.16.0-2+really2.41.2-3) over (1:4.16.0-2+really2.41-5) ... Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-5_amd64.deb ... Unpacking libgmp10:amd64 (2:6.3.0+dfsg-5) over (2:6.3.0+dfsg-3) ... Setting up libgmp10:amd64 (2:6.3.0+dfsg-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5120 files and directories currently installed.) Preparing to unpack .../libnettle8t64_3.10.2-1_amd64.deb ... Unpacking libnettle8t64:amd64 (3.10.2-1) over (3.10.1-1) ... Setting up libnettle8t64:amd64 (3.10.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5120 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.10.2-1_amd64.deb ... Unpacking libhogweed6t64:amd64 (3.10.2-1) over (3.10.1-1) ... Setting up libhogweed6t64:amd64 (3.10.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5120 files and directories currently installed.) Preparing to unpack .../libsqlite3-0_3.46.1-8_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-8) over (3.46.1-7) ... Setting up libsqlite3-0:amd64 (3.46.1-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5120 files and directories currently installed.) Preparing to unpack .../liblastlog2-2_2.41.2-3_amd64.deb ... Unpacking liblastlog2-2:amd64 (2.41.2-3) over (2.41-5) ... Setting up liblastlog2-2:amd64 (2.41.2-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5120 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.46-1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.46-1) over (10.46-1~deb13u1) ... Setting up libpcre2-8-0:amd64 (10.46-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5120 files and directories currently installed.) Preparing to unpack .../0-login.defs_1%3a4.18.0-1_all.deb ... Unpacking login.defs (1:4.18.0-1) over (1:4.17.4-2) ... Preparing to unpack .../1-passwd_1%3a4.18.0-1_amd64.deb ... Unpacking passwd (1:4.18.0-1) over (1:4.17.4-2) ... Preparing to unpack .../2-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) over (2025b-4+deb13u1) ... Preparing to unpack .../3-libgomp1_15.2.0-4_amd64.deb ... Unpacking libgomp1:amd64 (15.2.0-4) over (14.2.0-19) ... Preparing to unpack .../4-gcc-14-base_14.3.0-8_amd64.deb ... Unpacking gcc-14-base:amd64 (14.3.0-8) over (14.2.0-19) ... Selecting previously unselected package liblmdb0:amd64. Preparing to unpack .../5-liblmdb0_0.9.31-1+b2_amd64.deb ... Unpacking liblmdb0:amd64 (0.9.31-1+b2) ... Preparing to unpack .../6-igblast_1.20.0-3_amd64.deb ... Unpacking igblast (1.20.0-3) over (1.20.0-2) ... Setting up liblmdb0:amd64 (0.9.31-1+b2) ... Setting up gcc-14-base:amd64 (14.3.0-8) ... Setting up login.defs (1:4.18.0-1) ... Setting up libgomp1:amd64 (15.2.0-4) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Sep 30 21:58:03 UTC 2025. Universal Time is now: Tue Sep 30 21:58:03 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up igblast (1.20.0-3) ... Setting up passwd (1:4.18.0-1) ... Setting up mount (2.41.2-3) ... Setting up login (1:4.16.0-2+really2.41.2-3) ... Processing triggers for debianutils (5.23.2) ... Processing triggers for libc-bin (2.41-12) ... 0m10.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-get', '-yf', 'dist-upgrade'] 0m10.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m10.6s DUMP: 82cd4da388ae208623edd0f27e97652b - 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-cache', 'show', '--no-all-versions', 'igblast'] 0m10.7s DUMP: Package: igblast Source: ncbi-igblast Version: 1.20.0-3 Installed-Size: 69918 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libbz2-1.0, libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgomp1 (>= 6), liblmdb0 (>= 0.9.7), libncbi-vdb3 (>= 3.2.1+dfsg), libstdc++6 (>= 14), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.2.11.dfsg) Recommends: ncbi-blast+ Description-en: Immunoglobulin and T cell receptor variable domain sequence analysis IgBLAST allows users to view the matches to the germline V, D, and J genes, details at rearrangement junctions, the delineation of IG V domain framework regions, and complementarity determining regions. IgBLAST has the capability to analyse nucleotide and protein sequences, and can process sequences in batches. Furthermore, IgBLAST allows searches against the germline gene databases and other sequence databases simultaneously to minimize the chance of missing possibly the best matching germline V gene. Description-md5: 2962314d8994f10816be6f57d21f8ffc Homepage: https://ncbi.github.io/igblast/ Section: science Priority: optional Filename: pool/main/n/ncbi-igblast/igblast_1.20.0-3_amd64.deb Size: 19000740 MD5sum: 1fb130ce12045b1c285350c4980ad5f1 SHA256: fb04d32538777cd9ff72d2ba64a0dc83a2e6a0108e2316ae4c781f5105468be2 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-cache', 'show', '--no-all-versions', 'igblast'] 0m10.7s INFO: apt-cache knows about the following packages: igblast 0m10.7s INFO: Running scripts pre_install 0m10.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_database-server'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_database-server'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_exceptions'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_exceptions'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_extras'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_extras'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_foreign_architecture'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-cache', 'policy'] 0m10.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-cache', 'policy'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-cache', 'policy', 'igblast'] 0m10.8s DUMP: igblast: Installed: 1.20.0-3 Candidate: 1.20.0-3 Version table: *** 1.20.0-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m10.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-cache', 'policy', 'igblast'] 0m10.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-get', '-y', 'install', 'igblast'] 0m11.1s DUMP: Reading package lists... Building dependency tree... Reading state information... igblast is already the newest version (1.20.0-3). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-get', '-y', 'install', 'igblast'] 0m11.1s INFO: Running scripts post_install 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_install_exceptions'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_install_exceptions'] 0m11.1s INFO: Running scripts post_distupgrade 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_distupgrade_exceptions'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_distupgrade_exceptions'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_distupgrade_zz_backports'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_distupgrade_zz_backports'] 0m11.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg4hekpln'] 0m11.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg4hekpln'] 0m11.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg4hekpln'] 0m11.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg4hekpln'] 0m11.5s INFO: Running scripts pre_install 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_database-server'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_database-server'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_exceptions'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_exceptions'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_extras'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_extras'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-cache', 'policy'] 0m11.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-cache', 'policy'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-cache', 'policy', 'igblast'] 0m11.6s DUMP: igblast: Installed: 1.20.0-3 Candidate: 1.20.0-3 Version table: *** 1.20.0-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-cache', 'policy', 'igblast'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-get', '-y', 'install', 'igblast=1.20.0-3'] 0m11.8s DUMP: Reading package lists... Building dependency tree... Reading state information... igblast is already the newest version (1.20.0-3). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-get', '-y', 'install', 'igblast=1.20.0-3'] 0m11.8s INFO: Running scripts post_install 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_install_exceptions'] 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_install_exceptions'] 0m11.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg4hekpln'] 0m12.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg4hekpln'] 0m12.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', '-ac', '--ignore-obsolete'] 0m12.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', '-ac', '--ignore-obsolete'] 0m12.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m12.7s DUMP: 0.15.9~deb12u1 0m12.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m12.7s INFO: Running adequate version 0.15.9~deb12u1 now. 0m12.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'igblast'] 0m12.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'igblast'] 0m12.7s INFO: Running scripts pre_remove 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m13.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m13.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_remove_exceptions'] 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/pre_remove_exceptions'] 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m13.1s DUMP: install ok installed apt apt 3.1.6 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.3-1 install ok installed bsdutils bsdutils 1:2.41.2-3 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.3.0-8 install ok installed gcc-15-base:amd64 gcc-15-base 15.2.0-4 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed igblast igblast 1.20.0-3 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.6 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1 install ok installed libblkid1:amd64 libblkid1 2.41.2-3 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12 install ok installed libc6:amd64 libc6 2.41-12 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 15.2.0-4 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5 install ok installed libgomp1:amd64 libgomp1 15.2.0-4 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.2-3 install ok installed liblmdb0:amd64 liblmdb0 0.9.31-1+b2 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1.1 install ok installed libmbedcrypto16:amd64 libmbedcrypto16 3.6.4-2 install ok installed libmbedtls21:amd64 libmbedtls21 3.6.4-2 install ok installed libmbedx509-7:amd64 libmbedx509-7 3.6.4-2 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41.2-3 install ok installed libncbi-vdb3:amd64 libncbi-vdb3 3.2.1+dfsg-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.2-3 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-8 install ok installed libssl3t64:amd64 libssl3t64 3.5.3-1 install ok installed libstdc++6:amd64 libstdc++6 15.2.0-4 install ok installed libsystemd0:amd64 libsystemd0 258-1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 258-1 install ok installed libuuid1:amd64 libuuid1 2.41.2-3 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1.1 install ok installed login login 1:4.16.0-2+really2.41.2-3 install ok installed login.defs login.defs 1:4.18.0-1 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41.2-3 install ok installed ncbi-vdb-data ncbi-vdb-data 3.2.1+dfsg-2 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.3-1 install ok installed passwd passwd 1:4.18.0-1 install ok installed perl-base perl-base 5.40.1-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-5 install ok installed util-linux util-linux 2.41.2-3 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m13.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m13.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-get', 'remove', '--allow-remove-essential', 'libgomp1:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb3:amd64', 'ncbi-vdb-data', 'igblast'] 0m13.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: igblast libgomp1 liblmdb0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-vdb3 ncbi-vdb-data 0 upgraded, 0 newly installed, 8 to remove and 0 not upgraded. After this operation, 77.6 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5126 files and directories currently installed.) Removing igblast (1.20.0-3) ... Removing libgomp1:amd64 (15.2.0-4) ... Removing liblmdb0:amd64 (0.9.31-1+b2) ... Removing libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Removing libmbedtls21:amd64 (3.6.4-2) ... Removing libmbedx509-7:amd64 (3.6.4-2) ... Removing libmbedcrypto16:amd64 (3.6.4-2) ... Removing ncbi-vdb-data (3.2.1+dfsg-2) ... rm: cannot remove '/usr/lib/python3/dist-packages/__pycache__/vdb.*': No such file or directory Processing triggers for libc-bin (2.41-12) ... 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-get', 'remove', '--allow-remove-essential', 'libgomp1:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb3:amd64', 'ncbi-vdb-data', 'igblast'] 0m13.5s INFO: Running scripts post_remove 0m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_remove_exceptions'] 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_remove_exceptions'] 0m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'dpkg', '--purge', 'libgomp1:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb3:amd64', 'ncbi-vdb-data'] 0m13.5s DUMP: dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove liblmdb0 which isn't installed dpkg: warning: ignoring request to remove libmbedcrypto16 which isn't installed dpkg: warning: ignoring request to remove libmbedtls21 which isn't installed dpkg: warning: ignoring request to remove libmbedx509-7 which isn't installed dpkg: warning: ignoring request to remove libncbi-vdb3 which isn't installed (Reading database ... 4903 files and directories currently installed.) Purging configuration files for ncbi-vdb-data (3.2.1+dfsg-2) ... 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'dpkg', '--purge', 'libgomp1:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb3:amd64', 'ncbi-vdb-data'] 0m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'dpkg', '--purge', 'igblast'] 0m13.5s DUMP: dpkg: warning: ignoring request to remove igblast which isn't installed 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'dpkg', '--purge', 'igblast'] 0m13.5s INFO: Running scripts post_purge 0m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_purge_exceptions'] 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_purge_exceptions'] 0m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'dpkg', '--purge', '--pending'] 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'dpkg', '--purge', '--pending'] 0m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'dpkg', '--remove', '--pending'] 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'dpkg', '--remove', '--pending'] 0m13.5s INFO: Running scripts post_test 0m13.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_test_exceptions'] 0m13.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'tmp/scripts/post_test_exceptions'] 0m13.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg4hekpln'] 0m13.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpg4hekpln'] 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'dpkg-divert', '--list'] 0m13.8s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'dpkg-divert', '--list'] 0m13.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-get', 'clean'] 0m13.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpg4hekpln', 'apt-get', 'clean'] 0m13.8s DEBUG: Recording chroot state 0m14.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg4hekpln/dev/shm'] 0m14.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg4hekpln/dev/shm'] 0m14.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg4hekpln/dev/console'] 0m14.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg4hekpln/dev/console'] 0m14.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg4hekpln/dev/ptmx'] 0m14.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg4hekpln/dev/ptmx'] 0m14.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg4hekpln/dev/pts'] 0m14.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg4hekpln/dev/pts'] 0m14.4s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpg4hekpln/proc'] 0m14.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpg4hekpln/proc'] 0m14.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpg4hekpln'] 0m14.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpg4hekpln'] 0m14.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpg4hekpln 0m14.5s INFO: PASS: Upgrading between Debian distributions. 0m14.5s INFO: PASS: All tests. 0m14.5s INFO: piuparts run ends. ret=0 End: 2025-09-30 21:58:08 GMT