Start: 2026-03-09 10:15:43 GMT [stable] Package: ncbi-blast+ Version: 2.16.0+ds-7 Installed-Size: 70546 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: ncbi-data, python3, perl:any, libbz2-1.0, libc6 (>= 2.38), libgcc-s1 (>= 3.4), libgomp1 (>= 6), liblmdb0 (>= 0.9.7), libmbedcrypto16 (>= 3.6.0), libmbedtls21 (>= 3.6.0), libmbedx509-7 (>= 3.6.0), libncbi-vdb3 (>= 3.2.1+dfsg), libnghttp2-14 (>= 1.28.0), libpcre2-8-0 (>= 10.22), libsqlite3-0 (>= 3.6.12), libstdc++6 (>= 14), libuv1t64 (>= 1.33.1), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.2.11.dfsg) Enhances: t-coffee Description: next generation suite of BLAST sequence search tools Multi-Arch: foreign Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ Description-md5: 395e56c55c29f8e445efe977ed605c4b Tag: field::biology, field::biology:bioinformatics, implemented-in::c++, interface::commandline, role::program, use::analysing, works-with::biological-sequence Section: science Priority: optional Filename: pool/main/n/ncbi-blast+/ncbi-blast+_2.16.0+ds-7_amd64.deb Size: 15983928 MD5sum: f593f1cbee0d48c423237448a10a260b SHA256: 52306d3e33f3cf93f5e217476441b44edf0cf18fd1f3cb9f7761364fca0f717e [sid] Package: ncbi-blast+ Version: 2.17.0+ds-7 Installed-Size: 71936 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: ncbi-data, python3, sse4.2-support, perl:any, libbz2-1.0, libc6 (>= 2.38), libgcc-s1 (>= 3.4), libgomp1 (>= 6), liblmdb0 (>= 0.9.7), libmbedcrypto16 (>= 3.6.0), libmbedtls21 (>= 3.6.0), libmbedx509-7 (>= 3.6.0), libncbi-vdb3 (>= 3.2.1+dfsg), libnghttp2-14 (>= 1.28.0), libpcre2-8-0 (>= 10.22), libsqlite3-0 (>= 3.6.12), libstdc++6 (>= 14), libuv1t64 (>= 1.33.1), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.2.11.dfsg) Enhances: t-coffee Description: next generation suite of BLAST sequence search tools Multi-Arch: foreign Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ Description-md5: 395e56c55c29f8e445efe977ed605c4b Tag: field::biology, field::biology:bioinformatics, implemented-in::c++, interface::commandline, role::program, use::analysing, works-with::biological-sequence Section: science Priority: optional Filename: pool/main/n/ncbi-blast+/ncbi-blast+_2.17.0+ds-7_amd64.deb Size: 16982868 MD5sum: 7e8d06d366d179fe7b397c8640f623c9 SHA256: 66a983d82ebdcae466fdf49e7b4f5811f450ca27a8b695eda9d64d7f77ef2877 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d stable -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat --apt ncbi-blast+=2.17.0+ds-7 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.6.1~202508211944~1.6.0-10-gffba2cce starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/bin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz -d stable -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat --apt ncbi-blast+=2.17.0+ds-7 0m0.0s INFO: Running on: Linux piu-slave-conova-01 6.1.0-43-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.162-1 (2026-02-08) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpgkl_cp_6 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpgkl_cp_6 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/trixie-merged-usr_amd64.tar.gz'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6/proc'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6/proc'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6/dev/pts'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6/dev/pts'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6/dev/ptmx'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6/dev/ptmx'] 0m0.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6/dev/console'] 0m0.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/7', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6/dev/console'] 0m0.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6/dev/shm'] 0m0.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6/dev/shm'] 0m0.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ trixie main 0m0.3s DEBUG: Created policy-rc.d and chmodded it. 0m0.3s DEBUG: Created resolv.conf. 0m0.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpgkl_cp_6/tmp/scripts/ 0m0.3s INFO: Running scripts post_chroot_unpack 0m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-get', 'update'] 0m1.1s DUMP: Hit:1 http://deb.debian.org/debian trixie InRelease Reading package lists... 0m1.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-get', 'update'] 0m1.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-get', '-yf', 'dist-upgrade'] 0m1.8s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m1.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-get', '-yf', 'dist-upgrade'] 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.4s DUMP: 6d53b35ca35697b2767d0c31d63fde0a - 0m2.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.4s INFO: Running scripts post_setup 0m2.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_setup_dummy_users'] 0m3.0s DUMP: useradd warning: dummy1000's uid 1000 is greater than SYS_UID_MAX 999 useradd warning: dummy1001's uid 1001 is greater than SYS_UID_MAX 999 useradd warning: dummy1002's uid 1002 is greater than SYS_UID_MAX 999 useradd warning: dummy1003's uid 1003 is greater than SYS_UID_MAX 999 useradd warning: dummy1004's uid 1004 is greater than SYS_UID_MAX 999 useradd warning: dummy1005's uid 1005 is greater than SYS_UID_MAX 999 useradd warning: dummy1006's uid 1006 is greater than SYS_UID_MAX 999 useradd warning: dummy1007's uid 1007 is greater than SYS_UID_MAX 999 useradd warning: dummy1008's uid 1008 is greater than SYS_UID_MAX 999 useradd warning: dummy1009's uid 1009 is greater than SYS_UID_MAX 999 useradd warning: dummy1010's uid 1010 is greater than SYS_UID_MAX 999 0m3.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_setup_dummy_users'] 0m3.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_setup_forbid_home'] 0m3.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_setup_forbid_home'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_setup_minimize'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_setup_minimize'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_setup_zz_backports'] 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_setup_zz_backports'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.1s DUMP: install ok installed apt apt 3.0.3 install ok installed base-files base-files 13.8+deb13u3 install ok installed base-passwd base-passwd 3.6.7 install ok installed bash bash 5.2.37-2+b7 install ok installed bsdutils bsdutils 1:2.41-5 install ok installed coreutils coreutils 9.7-3 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.91 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.10-4 install ok installed dpkg dpkg 1.22.21 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.2.0-19 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69~deb13u1 install ok installed libacl1:amd64 libacl1 2.3.2-2+b1 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.0.3 install ok installed libattr1:amd64 libattr1 1:2.5.2-3 install ok installed libaudit-common libaudit-common 1:4.0.2-2 install ok installed libaudit1:amd64 libaudit1 1:4.0.2-2+b2 install ok installed libblkid1:amd64 libblkid1 2.41-5 install ok installed libbsd0:amd64 libbsd0 0.12.2-2 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6 install ok installed libc-bin libc-bin 2.41-12+deb13u1 install ok installed libc6:amd64 libc6 2.41-12+deb13u1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-4+b1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b3 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.38-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-9 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.280 install ok installed libgcc-s1:amd64 libgcc-s1 14.2.0-19 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.1-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41-5 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-4 install ok installed liblzma5:amd64 liblzma5 5.8.1-1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b1 install ok installed libmount1:amd64 libmount1 2.41-5 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.1-1 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1~deb13u1 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2 install ok installed libselinux1:amd64 libselinux1 3.8.1-1 install ok installed libsemanage-common libsemanage-common 3.8.1-1 install ok installed libsemanage2:amd64 libsemanage2 3.8.1-1 install ok installed libsepol2:amd64 libsepol2 3.8.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.41-5 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-7 install ok installed libssl3t64:amd64 libssl3t64 3.5.4-1~deb13u1 install ok installed libstdc++6:amd64 libstdc++6 14.2.0-19 install ok installed libsystemd0:amd64 libsystemd0 257.9-1~deb13u1 install ok installed libtinfo6:amd64 libtinfo6 6.5+20250216-2 install ok installed libudev1:amd64 libudev1 257.9-1~deb13u1 install ok installed libuuid1:amd64 libuuid1 2.41-5 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-1 install ok installed login login 1:4.16.0-2+really2.41-5 install ok installed login.defs login.defs 1:4.17.4-2 install ok installed mawk mawk 1.3.4.20250131-1 install ok installed mount mount 2.41-5 install ok installed ncurses-base ncurses-base 6.5+20250216-2 install ok installed ncurses-bin ncurses-bin 6.5+20250216-2 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.4-1~deb13u1 install ok installed passwd passwd 1:4.17.4-2 install ok installed perl-base perl-base 5.40.1-6 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-3+b2 install ok installed sysvinit-utils sysvinit-utils 3.14-4 install ok installed tar tar 1.35+dfsg-3.1 install ok installed tzdata tzdata 2025b-4+deb13u1 install ok installed util-linux util-linux 2.41-5 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1+b1 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.1s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat 0m3.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6'] 0m3.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6'] 0m3.4s INFO: Running scripts is_testable 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/is_testable_uninstallable'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/is_testable_uninstallable'] 0m3.4s INFO: Running scripts pre_test 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_test_exceptions'] 0m3.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_test_exceptions'] 0m3.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_test_root_password'] 0m3.5s DUMP: New password: Retype new password: passwd: password updated successfully 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_test_root_password'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-cache', 'show', '--no-all-versions', 'ncbi-blast+'] 0m3.6s DUMP: Package: ncbi-blast+ Version: 2.16.0+ds-7 Installed-Size: 70546 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: ncbi-data, python3, perl:any, libbz2-1.0, libc6 (>= 2.38), libgcc-s1 (>= 3.4), libgomp1 (>= 6), liblmdb0 (>= 0.9.7), libmbedcrypto16 (>= 3.6.0), libmbedtls21 (>= 3.6.0), libmbedx509-7 (>= 3.6.0), libncbi-vdb3 (>= 3.2.1+dfsg), libnghttp2-14 (>= 1.28.0), libpcre2-8-0 (>= 10.22), libsqlite3-0 (>= 3.6.12), libstdc++6 (>= 14), libuv1t64 (>= 1.33.1), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.2.11.dfsg) Enhances: t-coffee Description-en: next generation suite of BLAST sequence search tools The Basic Local Alignment Search Tool (BLAST) is the most widely used sequence similarity tool. There are versions of BLAST that compare protein queries to protein databases, nucleotide queries to nucleotide databases, as well as versions that translate nucleotide queries or databases in all six frames and compare to protein databases or queries. PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting with a protein query, and then uses that PSSM to perform further searches. It is also possible to compare a protein or nucleotide query to a database of PSSM??s. The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as a network service. Description-md5: 395e56c55c29f8e445efe977ed605c4b Multi-Arch: foreign Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ Tag: field::biology, field::biology:bioinformatics, implemented-in::c++, interface::commandline, role::program, use::analysing, works-with::biological-sequence Section: science Priority: optional Filename: pool/main/n/ncbi-blast+/ncbi-blast+_2.16.0+ds-7_amd64.deb Size: 15983928 MD5sum: f593f1cbee0d48c423237448a10a260b SHA256: 52306d3e33f3cf93f5e217476441b44edf0cf18fd1f3cb9f7761364fca0f717e 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-cache', 'show', '--no-all-versions', 'ncbi-blast+'] 0m3.6s INFO: apt-cache knows about the following packages: ncbi-blast+ 0m3.6s INFO: Running scripts pre_install 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_database-server'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_database-server'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_exceptions'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_exceptions'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_extras'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_extras'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_foreign_architecture'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-cache', 'policy'] 0m3.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian trixie/main amd64 Packages release v=13.3,o=Debian,a=stable,n=trixie,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-cache', 'policy'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-cache', 'policy', 'ncbi-blast+'] 0m3.8s DUMP: ncbi-blast+: Installed: (none) Candidate: 2.16.0+ds-7 Version table: 2.16.0+ds-7 500 500 http://deb.debian.org/debian trixie/main amd64 Packages 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-cache', 'policy', 'ncbi-blast+'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-get', '-y', 'install', 'ncbi-blast+'] 0m9.2s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgomp1 liblmdb0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-vdb3 libncursesw6 libnghttp2-14 libperl5.40 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libuv1t64 media-types ncbi-data ncbi-vdb-data netbase perl perl-modules-5.40 python3 python3-minimal python3.13 python3.13-minimal readline-common Suggested packages: gdbm-l10n sensible-utils perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python3.13-venv python3.13-doc binutils binfmt-support readline-doc Recommended packages: libgpm2 ca-certificates The following NEW packages will be installed: libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgomp1 liblmdb0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-vdb3 libncursesw6 libnghttp2-14 libperl5.40 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libuv1t64 media-types ncbi-blast+ ncbi-data ncbi-vdb-data netbase perl perl-modules-5.40 python3 python3-minimal python3.13 python3.13-minimal readline-common 0 upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 36.1 MB of archives. After this operation, 180 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get:2 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.5-2 [862 kB] Get:3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.5-2 [2224 kB] Get:4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get:5 http://deb.debian.org/debian trixie/main amd64 media-types all 13.0.0 [29.3 kB] Get:6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.5 [12.4 kB] Get:7 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get:8 http://deb.debian.org/debian trixie/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get:10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:11 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.5-2 [1956 kB] Get:12 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.5-2 [757 kB] Get:13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get:14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get:15 http://deb.debian.org/debian trixie/main amd64 perl-modules-5.40 all 5.40.1-6 [3019 kB] Get:16 http://deb.debian.org/debian trixie/main amd64 libgdbm6t64 amd64 1.24-2 [75.2 kB] Get:17 http://deb.debian.org/debian trixie/main amd64 libgdbm-compat4t64 amd64 1.24-2 [50.3 kB] Get:18 http://deb.debian.org/debian trixie/main amd64 libperl5.40 amd64 5.40.1-6 [4341 kB] Get:19 http://deb.debian.org/debian trixie/main amd64 perl amd64 5.40.1-6 [267 kB] Get:20 http://deb.debian.org/debian trixie/main amd64 libgomp1 amd64 14.2.0-19 [137 kB] Get:21 http://deb.debian.org/debian trixie/main amd64 liblmdb0 amd64 0.9.31-1+b2 [45.2 kB] Get:22 http://deb.debian.org/debian trixie/main amd64 libmbedcrypto16 amd64 3.6.5-0.1~deb13u1 [361 kB] Get:23 http://deb.debian.org/debian trixie/main amd64 libmbedx509-7 amd64 3.6.5-0.1~deb13u1 [152 kB] Get:24 http://deb.debian.org/debian trixie/main amd64 libmbedtls21 amd64 3.6.5-0.1~deb13u1 [243 kB] Get:25 http://deb.debian.org/debian trixie/main amd64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB] Get:26 http://deb.debian.org/debian trixie/main amd64 libncbi-vdb3 amd64 3.2.1+dfsg-2 [1164 kB] Get:27 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get:28 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get:29 http://deb.debian.org/debian trixie/main amd64 ncbi-data all 6.1.20170106+dfsg2-6 [3541 kB] Get:30 http://deb.debian.org/debian trixie/main amd64 ncbi-blast+ amd64 2.16.0+ds-7 [16.0 MB] Fetched 36.1 MB in 0s (128 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4940 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.5-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.5-2) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.5-2_amd64.deb ... Unpacking python3.13-minimal (3.13.5-2) ... Setting up libpython3.13-minimal:amd64 (3.13.5-2) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.5-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5274 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.5-1_amd64.deb ... Unpacking python3-minimal (3.13.5-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../3-libffi8_3.4.8-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.8-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../4-libncursesw6_6.5+20250216-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20250216-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.5-2_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.5-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.5-2_amd64.deb ... Unpacking python3.13 (3.13.5-2) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.5-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.5-1) ... Setting up python3-minimal (3.13.5-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5782 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.5-1_amd64.deb ... Unpacking python3 (3.13.5-1) ... Selecting previously unselected package perl-modules-5.40. Preparing to unpack .../01-perl-modules-5.40_5.40.1-6_all.deb ... Unpacking perl-modules-5.40 (5.40.1-6) ... Selecting previously unselected package libgdbm6t64:amd64. Preparing to unpack .../02-libgdbm6t64_1.24-2_amd64.deb ... Unpacking libgdbm6t64:amd64 (1.24-2) ... Selecting previously unselected package libgdbm-compat4t64:amd64. Preparing to unpack .../03-libgdbm-compat4t64_1.24-2_amd64.deb ... Unpacking libgdbm-compat4t64:amd64 (1.24-2) ... Selecting previously unselected package libperl5.40:amd64. Preparing to unpack .../04-libperl5.40_5.40.1-6_amd64.deb ... Unpacking libperl5.40:amd64 (5.40.1-6) ... Selecting previously unselected package perl. Preparing to unpack .../05-perl_5.40.1-6_amd64.deb ... Unpacking perl (5.40.1-6) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../06-libgomp1_14.2.0-19_amd64.deb ... Unpacking libgomp1:amd64 (14.2.0-19) ... Selecting previously unselected package liblmdb0:amd64. 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Unpacking libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../13-libnghttp2-14_1.64.0-1.1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1.1) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../14-libuv1t64_1.50.0-2_amd64.deb ... Unpacking libuv1t64:amd64 (1.50.0-2) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../15-ncbi-data_6.1.20170106+dfsg2-6_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg2-6) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../16-ncbi-blast+_2.16.0+ds-7_amd64.deb ... Unpacking ncbi-blast+ (2.16.0+ds-7) ... Setting up media-types (13.0.0) ... Setting up liblmdb0:amd64 (0.9.31-1+b2) ... Setting up ncbi-data (6.1.20170106+dfsg2-6) ... Setting up libgdbm6t64:amd64 (1.24-2) ... Setting up libgdbm-compat4t64:amd64 (1.24-2) ... Setting up libuv1t64:amd64 (1.50.0-2) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1) ... Setting up libgomp1:amd64 (14.2.0-19) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up libffi8:amd64 (3.4.8-2) ... Setting up perl-modules-5.40 (5.40.1-6) ... Setting up ncbi-vdb-data (3.2.1+dfsg-2) ... Setting up netbase (6.5) ... Setting up libmbedcrypto16:amd64 (3.6.5-0.1~deb13u1) ... Setting up readline-common (8.2-6) ... Setting up libperl5.40:amd64 (5.40.1-6) ... Setting up perl (5.40.1-6) ... Setting up libmbedx509-7:amd64 (3.6.5-0.1~deb13u1) ... Setting up libmbedtls21:amd64 (3.6.5-0.1~deb13u1) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up libpython3.13-stdlib:amd64 (3.13.5-2) ... Setting up libpython3-stdlib:amd64 (3.13.5-1) ... Setting up python3.13 (3.13.5-2) ... Setting up libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Setting up python3 (3.13.5-1) ... Setting up ncbi-blast+ (2.16.0+ds-7) ... Processing triggers for libc-bin (2.41-12+deb13u1) ... 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-get', '-y', 'install', 'ncbi-blast+'] 0m9.2s INFO: Running scripts post_install 0m9.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_install_exceptions'] 0m9.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_install_exceptions'] 0m9.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6'] 0m9.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6'] 0m9.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpgkl_cp_6 to sid 0m9.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m9.8s INFO: Running scripts pre_distupgrade 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-get', 'update'] 0m12.8s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [187 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [10.3 MB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7526 kB] Fetched 18.0 MB in 2s (9763 kB/s) Reading package lists... 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-get', 'update'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-get', '-yf', 'dist-upgrade'] 0m25.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: gcc-16-base isa-support libc-gconv-modules-extra sse4.2-support The following packages will be upgraded: apt base-files base-passwd bash bsdutils coreutils debconf diffutils dpkg gcc-14-base grep init-system-helpers libacl1 libapt-pkg7.0 libattr1 libaudit-common libaudit1 libblkid1 libbsd0 libbz2-1.0 libc-bin libc6 libcap-ng0 libcap2 libcrypt1 libdb5.3t64 libdebconfclient0 libexpat1 libffi8 libgcc-s1 libgdbm-compat4t64 libgdbm6t64 libgmp10 libgomp1 libhogweed6t64 liblastlog2-2 liblmdb0 liblz4-1 liblzma5 libmbedcrypto16 libmbedtls21 libmbedx509-7 libmd0 libmount1 libncbi-vdb3 libncursesw6 libnettle8t64 libnghttp2-14 libpam-modules libpam-modules-bin libpam0g libpcre2-8-0 libperl5.40 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libssl3t64 libstdc++6 libsystemd0 libtinfo6 libudev1 libuuid1 libuv1t64 libxxhash0 libzstd1 login login.defs mawk media-types mount ncbi-blast+ ncbi-data ncurses-base ncurses-bin openssl-provider-legacy passwd perl perl-base perl-modules-5.40 python3 python3-minimal python3.13 python3.13-minimal readline-common sqv sysvinit-utils tar tzdata util-linux zlib1g 98 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 68.7 MB of archives. After this operation, 1639 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 libc-gconv-modules-extra amd64 2.42-13 [1123 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.42-13 [1814 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.42-13 [644 kB] Get:4 http://deb.debian.org/debian sid/main amd64 gcc-16-base amd64 16-20260308-1 [35.3 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 16-20260308-1 [73.8 kB] Get:6 http://deb.debian.org/debian sid/main amd64 base-files amd64 14 [72.9 kB] Get:7 http://deb.debian.org/debian sid/main amd64 bash amd64 5.3-2 [1561 kB] Get:8 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.10-1 [3142 kB] Get:9 http://deb.debian.org/debian sid/main amd64 diffutils amd64 1:3.12-1 [405 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libbz2-1.0 amd64 1.0.8-6+b1 [40.4 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.3-2+b1 [28.1 kB] Get:12 http://deb.debian.org/debian sid/main amd64 liblz4-1 amd64 1.10.0-8 [70.1 kB] Get:13 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.8.2-2 [327 kB] Get:14 http://deb.debian.org/debian sid/main amd64 openssl-provider-legacy amd64 3.5.5-1 [311 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.7+dfsg-3+b1 [308 kB] Get:16 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-3 [89.0 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.5.5-1 [2449 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 16-20260308-1 [765 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 260~rc2-1 [446 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 260~rc2-1 [132 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libapt-pkg7.0 amd64 3.1.16 [1235 kB] Get:22 http://deb.debian.org/debian sid/main amd64 tar amd64 1.35+dfsg-4 [817 kB] Get:23 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.23.7 [1531 kB] Get:24 http://deb.debian.org/debian sid/main amd64 grep amd64 3.12-1 [443 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.6+20251231-1 [137 kB] Get:26 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.6+20251231-1 [354 kB] Get:27 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.6+20251231-1 [445 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libperl5.40 amd64 5.40.1-7 [4317 kB] Get:29 http://deb.debian.org/debian sid/main amd64 perl amd64 5.40.1-7 [267 kB] Get:30 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.40.1-7 [1679 kB] Get:31 http://deb.debian.org/debian sid/main amd64 perl-modules-5.40 all 5.40.1-7 [3012 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.5.1-1 [98.0 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-11 [710 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.26-1+b1 [78.9 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.26-1+b1 [53.1 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.41.3-4 [39.1 kB] Get:37 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.41.3-4 [94.2 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.41.3-4 [174 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.41.3-4 [212 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.41.3-4 [145 kB] Get:41 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.41.3-4 [1166 kB] Get:42 http://deb.debian.org/debian sid/main amd64 mount amd64 2.41.3-4 [164 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.46-1+b1 [298 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.9-4+b1 [86.1 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.282+b2 [11.2 kB] Get:46 http://deb.debian.org/debian sid/main amd64 base-passwd amd64 3.6.8 [54.6 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-5+b1 [561 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libnettle8t64 amd64 3.10.2-1 [307 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libhogweed6t64 amd64 3.10.2-1 [336 kB] Get:50 http://deb.debian.org/debian sid/main amd64 sqv amd64 1.3.0-5 [648 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.6.0-2+b1 [52.2 kB] Get:52 http://deb.debian.org/debian sid/main amd64 apt amd64 3.1.16 [1529 kB] Get:53 http://deb.debian.org/debian sid/main amd64 init-system-helpers all 1.69 [39.3 kB] Get:54 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.6+20251231-1 [277 kB] Get:55 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.15-6 [35.0 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:4.1.2-1 [14.3 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.9.1-1 [17.4 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:4.1.2-1+b1 [60.2 kB] Get:59 http://deb.debian.org/debian sid/main amd64 debconf all 1.5.92 [123 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.7.0-5+b1 [70.4 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.7.0-5+b1 [49.8 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.7.0-5+b1 [179 kB] Get:63 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.16.0-2+really2.41.3-4 [106 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.7.4-1 [116 kB] Get:65 http://deb.debian.org/debian sid/main amd64 media-types all 14.0.0 [30.8 kB] Get:66 http://deb.debian.org/debian sid/main amd64 tzdata all 2026a-1 [259 kB] Get:67 http://deb.debian.org/debian sid/main amd64 python3.13 amd64 3.13.12-1 [776 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.5.2-3+b1 [26.4 kB] Get:69 http://deb.debian.org/debian sid/main amd64 readline-common all 8.3-4 [74.8 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.3-4 [181 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.1-9+b1 [918 kB] Get:72 http://deb.debian.org/debian sid/main amd64 python3.13-minimal amd64 3.13.12-1 [2267 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libpython3.13-minimal amd64 3.13.12-1 [866 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libpython3.13-stdlib amd64 3.13.12-1 [1974 kB] Get:75 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.13.9-3 [27.6 kB] Get:76 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.13.9-3 [27.6 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.13.9-3 [10.5 kB] Get:78 http://deb.debian.org/debian sid/main amd64 isa-support amd64 27+b1 [15.5 kB] Get:79 http://deb.debian.org/debian sid/main amd64 sse4.2-support amd64 27+b1 [3692 B] Get:80 http://deb.debian.org/debian sid/main amd64 libacl1 amd64 2.3.2-3 [32.7 kB] Get:81 http://deb.debian.org/debian sid/main amd64 libattr1 amd64 1:2.5.2-4 [23.0 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.75-10+b9 [26.8 kB] Get:83 http://deb.debian.org/debian sid/main amd64 liblastlog2-2 amd64 2.41.3-4 [30.0 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libmd0 amd64 1.1.0-2+b2 [36.2 kB] Get:85 http://deb.debian.org/debian sid/main amd64 login.defs all 1:4.19.3-1 [211 kB] Get:86 http://deb.debian.org/debian sid/main amd64 mawk amd64 1.3.4.20260302-1 [142 kB] Get:87 http://deb.debian.org/debian sid/main amd64 libbsd0 amd64 0.12.2-2+b1 [132 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.9-1 [7888 B] Get:89 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.9-2 [300 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.9-1+b1 [96.9 kB] Get:91 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.19.3-1 [1288 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 16-20260308-1 [151 kB] Get:93 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.3.0-12 [52.8 kB] Get:94 http://deb.debian.org/debian sid/main amd64 liblmdb0 amd64 0.9.31-1+b3 [46.1 kB] Get:95 http://deb.debian.org/debian sid/main amd64 libmbedcrypto16 amd64 3.6.5-0.1 [363 kB] Get:96 http://deb.debian.org/debian sid/main amd64 libmbedx509-7 amd64 3.6.5-0.1 [152 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libmbedtls21 amd64 3.6.5-0.1 [246 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libncbi-vdb3 amd64 3.2.1+dfsg-2+b1 [1180 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.68.0-2 [79.2 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libuv1t64 amd64 1.51.0-2+b1 [156 kB] Get:101 http://deb.debian.org/debian sid/main amd64 ncbi-data all 6.1.20170106+dfsg2-7 [3540 kB] Get:102 http://deb.debian.org/debian sid/main amd64 ncbi-blast+ amd64 2.17.0+ds-7 [17.0 MB] Preconfiguring packages ... 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(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8341 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.41.3-4_amd64.deb ... Unpacking bsdutils (1:2.41.3-4) over (1:2.41-5) ... Setting up bsdutils (1:2.41.3-4) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8316 files and directories currently installed.) Preparing to unpack .../archives/apt_3.1.16_amd64.deb ... Unpacking apt (3.1.16) over (3.0.3) ... Setting up apt (3.1.16) ... (Reading database ... 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Leaving 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Leaving 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Leaving 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Leaving 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-4) over (8.2-6) ... Preparing to unpack .../8-libsqlite3-0_3.46.1-9+b1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-9+b1) over (3.46.1-7) ... Setting up libsqlite3-0:amd64 (3.46.1-9+b1) ... (Reading database ... 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Installing new version of config file /etc/mime.types ... Setting up liblmdb0:amd64 (0.9.31-1+b3) ... Setting up ncbi-data (6.1.20170106+dfsg2-7) ... Installing new version of config file /etc/ncbi/.ncbirc ... Setting up libgdbm6t64:amd64 (1.26-1+b1) ... Setting up libgdbm-compat4t64:amd64 (1.26-1+b1) ... Setting up gcc-14-base:amd64 (14.3.0-12) ... Setting up login.defs (1:4.19.3-1) ... Installing new version of config file /etc/login.defs ... Setting up libuv1t64:amd64 (1.51.0-2+b1) ... Setting up libnghttp2-14:amd64 (1.68.0-2) ... Setting up libgomp1:amd64 (16-20260308-1) ... Setting up libsemanage-common (3.9-1) ... Setting up tzdata (2026a-1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Mar 9 10:16:07 UTC 2026. Universal Time is now: Mon Mar 9 10:16:07 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libsepol2:amd64 (3.9-2) ... Setting up libncursesw6:amd64 (6.6+20251231-1) ... Setting up libffi8:amd64 (3.5.2-3+b1) ... Setting up mount (2.41.3-4) ... Setting up perl-modules-5.40 (5.40.1-7) ... Setting up sse4.2-support (27+b1) ... Setting up libsemanage2:amd64 (3.9-1+b1) ... Setting up mawk (1.3.4.20260302-1) ... Setting up libmbedcrypto16:amd64 (3.6.5-0.1) ... Setting up libbsd0:amd64 (0.12.2-2+b1) ... Setting up readline-common (8.3-4) ... Setting up login (1:4.16.0-2+really2.41.3-4) ... Setting up libperl5.40:amd64 (5.40.1-7) ... Setting up perl (5.40.1-7) ... Setting up libmbedx509-7:amd64 (3.6.5-0.1) ... Setting up libmbedtls21:amd64 (3.6.5-0.1) ... Setting up libreadline8t64:amd64 (8.3-4) ... Setting up passwd (1:4.19.3-1) ... Setting up libpython3.13-stdlib:amd64 (3.13.12-1) ... Setting up libpython3-stdlib:amd64 (3.13.9-3) ... Setting up python3.13 (3.13.12-1) ... Setting up libncbi-vdb3:amd64 (3.2.1+dfsg-2+b1) ... Setting up python3 (3.13.9-3) ... Setting up ncbi-blast+ (2.17.0+ds-7) ... Processing triggers for libc-bin (2.42-13) ... Processing triggers for debianutils (5.23.2) ... 0m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-get', '-yf', 'dist-upgrade'] 0m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m26.6s DUMP: fd107699493b8191f19c96e23f2ca7ec - 0m26.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m26.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-cache', 'show', '--no-all-versions', 'ncbi-blast+'] 0m27.0s DUMP: Package: ncbi-blast+ Version: 2.17.0+ds-7 Installed-Size: 71936 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: ncbi-data, python3, sse4.2-support, perl:any, libbz2-1.0, libc6 (>= 2.38), libgcc-s1 (>= 3.4), libgomp1 (>= 6), liblmdb0 (>= 0.9.7), libmbedcrypto16 (>= 3.6.0), libmbedtls21 (>= 3.6.0), libmbedx509-7 (>= 3.6.0), libncbi-vdb3 (>= 3.2.1+dfsg), libnghttp2-14 (>= 1.28.0), libpcre2-8-0 (>= 10.22), libsqlite3-0 (>= 3.6.12), libstdc++6 (>= 14), libuv1t64 (>= 1.33.1), libzstd1 (>= 1.5.5), zlib1g (>= 1:1.2.11.dfsg) Enhances: t-coffee Description-en: next generation suite of BLAST sequence search tools The Basic Local Alignment Search Tool (BLAST) is the most widely used sequence similarity tool. There are versions of BLAST that compare protein queries to protein databases, nucleotide queries to nucleotide databases, as well as versions that translate nucleotide queries or databases in all six frames and compare to protein databases or queries. PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting with a protein query, and then uses that PSSM to perform further searches. It is also possible to compare a protein or nucleotide query to a database of PSSM??s. The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as a network service. Description-md5: 395e56c55c29f8e445efe977ed605c4b Multi-Arch: foreign Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ Tag: field::biology, field::biology:bioinformatics, implemented-in::c++, interface::commandline, role::program, use::analysing, works-with::biological-sequence Section: science Priority: optional Filename: pool/main/n/ncbi-blast+/ncbi-blast+_2.17.0+ds-7_amd64.deb Size: 16982868 MD5sum: 7e8d06d366d179fe7b397c8640f623c9 SHA256: 66a983d82ebdcae466fdf49e7b4f5811f450ca27a8b695eda9d64d7f77ef2877 0m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-cache', 'show', '--no-all-versions', 'ncbi-blast+'] 0m27.0s INFO: apt-cache knows about the following packages: ncbi-blast+ 0m27.0s INFO: Running scripts pre_install 0m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_database-server'] 0m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_database-server'] 0m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_exceptions'] 0m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_exceptions'] 0m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_extras'] 0m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_extras'] 0m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_foreign_architecture'] 0m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_foreign_architecture'] 0m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m27.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m27.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-cache', 'policy'] 0m27.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-cache', 'policy'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-cache', 'policy', 'ncbi-blast+'] 0m27.1s DUMP: ncbi-blast+: Installed: 2.17.0+ds-7 Candidate: 2.17.0+ds-7 Version table: *** 2.17.0+ds-7 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m27.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-cache', 'policy', 'ncbi-blast+'] 0m27.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-get', '-y', 'install', 'ncbi-blast+'] 0m27.7s DUMP: Reading package lists... Building dependency tree... Reading state information... ncbi-blast+ is already the newest version (2.17.0+ds-7). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-get', '-y', 'install', 'ncbi-blast+'] 0m27.7s INFO: Running scripts post_install 0m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_install_exceptions'] 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_install_exceptions'] 0m27.7s INFO: Running scripts post_distupgrade 0m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_distupgrade_exceptions'] 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_distupgrade_exceptions'] 0m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_distupgrade_zz_backports'] 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_distupgrade_zz_backports'] 0m27.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6'] 0m28.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6'] 0m28.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6'] 0m28.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6'] 0m28.7s INFO: Running scripts pre_install 0m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_database-server'] 0m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_database-server'] 0m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_exceptions'] 0m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_exceptions'] 0m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_extras'] 0m28.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_extras'] 0m28.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_foreign_architecture'] 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_foreign_architecture'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-cache', 'policy'] 0m28.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-cache', 'policy'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-cache', 'policy', 'ncbi-blast+'] 0m28.9s DUMP: ncbi-blast+: Installed: 2.17.0+ds-7 Candidate: 2.17.0+ds-7 Version table: *** 2.17.0+ds-7 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-cache', 'policy', 'ncbi-blast+'] 0m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-get', '-y', 'install', 'ncbi-blast+=2.17.0+ds-7'] 0m29.5s DUMP: Reading package lists... Building dependency tree... Reading state information... ncbi-blast+ is already the newest version (2.17.0+ds-7). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-get', '-y', 'install', 'ncbi-blast+=2.17.0+ds-7'] 0m29.5s INFO: Running scripts post_install 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_install_exceptions'] 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_install_exceptions'] 0m29.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6'] 0m29.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6'] 0m30.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', '-ac', '--ignore-obsolete'] 0m31.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', '-ac', '--ignore-obsolete'] 0m31.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m31.3s DUMP: 0.15.9~deb12u1 0m31.3s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m31.3s INFO: Running adequate version 0.15.9~deb12u1 now. 0m31.3s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'ncbi-blast+'] 0m33.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'ncbi-blast+'] 0m33.9s INFO: Running scripts pre_remove 0m33.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m34.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m34.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_remove_exceptions'] 0m34.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/pre_remove_exceptions'] 0m34.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m34.7s DUMP: install ok installed apt apt 3.1.16 install ok installed base-files base-files 14 install ok installed base-passwd base-passwd 3.6.8 install ok installed bash bash 5.3-2 install ok installed bsdutils bsdutils 1:2.41.3-4 install ok installed coreutils coreutils 9.10-1 install ok installed dash dash 0.5.12-12 install ok installed debconf debconf 1.5.92 install ok installed debian-archive-keyring debian-archive-keyring 2025.1 install ok installed debianutils debianutils 5.23.2 install ok installed diffutils diffutils 1:3.12-1 install ok installed dpkg dpkg 1.23.7 install ok installed findutils findutils 4.10.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14.3.0-12 install ok installed gcc-16-base:amd64 gcc-16-base 16-20260308-1 install ok installed grep grep 3.12-1 install ok installed gzip gzip 1.13-1 install ok installed hostname hostname 3.25 install ok installed init-system-helpers init-system-helpers 1.69 install ok installed isa-support:amd64 isa-support 27+b1 install ok installed libacl1:amd64 libacl1 2.3.2-3 install ok installed libapt-pkg7.0:amd64 libapt-pkg7.0 3.1.16 install ok installed libattr1:amd64 libattr1 1:2.5.2-4 install ok installed libaudit-common libaudit-common 1:4.1.2-1 install ok installed libaudit1:amd64 libaudit1 1:4.1.2-1+b1 install ok installed libblkid1:amd64 libblkid1 2.41.3-4 install ok installed libbsd0:amd64 libbsd0 0.12.2-2+b1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-6+b1 install ok installed libc-bin libc-bin 2.42-13 install ok installed libc-gconv-modules-extra:amd64 libc-gconv-modules-extra 2.42-13 install ok installed libc6:amd64 libc6 2.42-13 install ok installed libcap-ng0:amd64 libcap-ng0 0.9.1-1 install ok installed libcap2:amd64 libcap2 1:2.75-10+b9 install ok installed libcrypt1:amd64 libcrypt1 1:4.5.1-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-11 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.282+b2 install ok installed libexpat1:amd64 libexpat1 2.7.4-1 install ok installed libffi8:amd64 libffi8 3.5.2-3+b1 install ok installed libgcc-s1:amd64 libgcc-s1 16-20260308-1 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.26-1+b1 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.26-1+b1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-5+b1 install ok installed libgomp1:amd64 libgomp1 16-20260308-1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10.2-1 install ok installed liblastlog2-2:amd64 liblastlog2-2 2.41.3-4 install ok installed liblmdb0:amd64 liblmdb0 0.9.31-1+b3 install ok installed liblz4-1:amd64 liblz4-1 1.10.0-8 install ok installed liblzma5:amd64 liblzma5 5.8.2-2 install ok installed libmbedcrypto16:amd64 libmbedcrypto16 3.6.5-0.1 install ok installed libmbedtls21:amd64 libmbedtls21 3.6.5-0.1 install ok installed libmbedx509-7:amd64 libmbedx509-7 3.6.5-0.1 install ok installed libmd0:amd64 libmd0 1.1.0-2+b2 install ok installed libmount1:amd64 libmount1 2.41.3-4 install ok installed libncbi-vdb3:amd64 libncbi-vdb3 3.2.1+dfsg-2+b1 install ok installed libncursesw6:amd64 libncursesw6 6.6+20251231-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.10.2-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.68.0-2 install ok installed libpam-modules:amd64 libpam-modules 1.7.0-5+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.7.0-5+b1 install ok installed libpam-runtime libpam-runtime 1.7.0-5 install ok installed libpam0g:amd64 libpam0g 1.7.0-5+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.46-1+b1 install ok installed libperl5.40:amd64 libperl5.40 5.40.1-7 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.13.9-3 install ok installed libpython3.13-minimal:amd64 libpython3.13-minimal 3.13.12-1 install ok installed libpython3.13-stdlib:amd64 libpython3.13-stdlib 3.13.12-1 install ok installed libreadline8t64:amd64 libreadline8t64 8.3-4 install ok installed libseccomp2:amd64 libseccomp2 2.6.0-2+b1 install ok installed libselinux1:amd64 libselinux1 3.9-4+b1 install ok installed libsemanage-common libsemanage-common 3.9-1 install ok installed libsemanage2:amd64 libsemanage2 3.9-1+b1 install ok installed libsepol2:amd64 libsepol2 3.9-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.41.3-4 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.1-9+b1 install ok installed libssl3t64:amd64 libssl3t64 3.5.5-1 install ok installed libstdc++6:amd64 libstdc++6 16-20260308-1 install ok installed libsystemd0:amd64 libsystemd0 260~rc2-1 install ok installed libtinfo6:amd64 libtinfo6 6.6+20251231-1 install ok installed libudev1:amd64 libudev1 260~rc2-1 install ok installed libuuid1:amd64 libuuid1 2.41.3-4 install ok installed libuv1t64:amd64 libuv1t64 1.51.0-2+b1 install ok installed libxxhash0:amd64 libxxhash0 0.8.3-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.7+dfsg-3+b1 install ok installed login login 1:4.16.0-2+really2.41.3-4 install ok installed login.defs login.defs 1:4.19.3-1 install ok installed mawk mawk 1.3.4.20260302-1 install ok installed media-types media-types 14.0.0 install ok installed mount mount 2.41.3-4 install ok installed ncbi-blast+ ncbi-blast+ 2.17.0+ds-7 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg2-7 install ok installed ncbi-vdb-data ncbi-vdb-data 3.2.1+dfsg-2 install ok installed ncurses-base ncurses-base 6.6+20251231-1 install ok installed ncurses-bin ncurses-bin 6.6+20251231-1 install ok installed netbase netbase 6.5 install ok installed openssl-provider-legacy openssl-provider-legacy 3.5.5-1 install ok installed passwd passwd 1:4.19.3-1 install ok installed perl perl 5.40.1-7 install ok installed perl-base perl-base 5.40.1-7 install ok installed perl-modules-5.40 perl-modules-5.40 5.40.1-7 install ok installed python3 python3 3.13.9-3 install ok installed python3-minimal python3-minimal 3.13.9-3 install ok installed python3.13 python3.13 3.13.12-1 install ok installed python3.13-minimal python3.13-minimal 3.13.12-1 install ok installed readline-common readline-common 8.3-4 install ok installed sed sed 4.9-2 install ok installed sqv sqv 1.3.0-5 install ok installed sse4.2-support sse4.2-support 27+b1 install ok installed sysvinit-utils sysvinit-utils 3.15-6 install ok installed tar tar 1.35+dfsg-4 install ok installed tzdata tzdata 2026a-1 install ok installed util-linux util-linux 2.41.3-4 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-3 0m34.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m34.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-get', 'remove', '--allow-remove-essential', 'isa-support:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgomp1:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libperl5.40:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libuv1t64:amd64', 'media-types', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'perl', 'perl-modules-5.40', 'python3', 'python3-minimal', 'python3.13', 'python3.13-minimal', 'readline-common', 'sse4.2-support', 'ncbi-blast+-'] 0m36.0s DUMP: Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following packages will be REMOVED: isa-support libexpat1 libffi8 libgdbm-compat4t64 libgdbm6t64 libgomp1 liblmdb0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libncbi-vdb3 libncursesw6 libnghttp2-14 libperl5.40 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libreadline8t64 libuv1t64 media-types ncbi-blast+ ncbi-data ncbi-vdb-data netbase perl perl-modules-5.40 python3 python3-minimal python3.13 python3.13-minimal readline-common sse4.2-support 0 upgraded, 0 newly installed, 32 to remove and 0 not upgraded. After this operation, 182 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8345 files and directories currently installed.) Removing ncbi-blast+ (2.17.0+ds-7) ... Removing sse4.2-support (27+b1) ... Removing isa-support:amd64 (27+b1) ... Removing python3 (3.13.9-3) ... Removing python3.13 (3.13.12-1) ... Removing python3-minimal (3.13.9-3) ... Removing python3.13-minimal (3.13.12-1) ... Removing libexpat1:amd64 (2.7.4-1) ... Removing libpython3-stdlib:amd64 (3.13.9-3) ... Removing libpython3.13-stdlib:amd64 (3.13.12-1) ... Removing libffi8:amd64 (3.5.2-3+b1) ... Removing perl (5.40.1-7) ... Removing libperl5.40:amd64 (5.40.1-7) ... Removing libgdbm-compat4t64:amd64 (1.26-1+b1) ... Removing libgdbm6t64:amd64 (1.26-1+b1) ... Removing libgomp1:amd64 (16-20260308-1) ... Removing liblmdb0:amd64 (0.9.31-1+b3) ... Removing libncbi-vdb3:amd64 (3.2.1+dfsg-2+b1) ... Removing libmbedtls21:amd64 (3.6.5-0.1) ... Removing libmbedx509-7:amd64 (3.6.5-0.1) ... Removing libmbedcrypto16:amd64 (3.6.5-0.1) ... Removing libncursesw6:amd64 (6.6+20251231-1) ... Removing libnghttp2-14:amd64 (1.68.0-2) ... Removing libpython3.13-minimal:amd64 (3.13.12-1) ... Removing libreadline8t64:amd64 (8.3-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libuv1t64:amd64 (1.51.0-2+b1) ... Removing media-types (14.0.0) ... Removing ncbi-data (6.1.20170106+dfsg2-7) ... Removing ncbi-vdb-data (3.2.1+dfsg-2) ... Removing netbase (6.5) ... Removing perl-modules-5.40 (5.40.1-7) ... Removing readline-common (8.3-4) ... Processing triggers for libc-bin (2.42-13) ... 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-get', 'remove', '--allow-remove-essential', 'isa-support:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgomp1:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libperl5.40:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libuv1t64:amd64', 'media-types', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'perl', 'perl-modules-5.40', 'python3', 'python3-minimal', 'python3.13', 'python3.13-minimal', 'readline-common', 'sse4.2-support', 'ncbi-blast+-'] 0m36.0s INFO: Running scripts post_remove 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_remove_exceptions'] 0m36.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_remove_exceptions'] 0m36.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'dpkg', '--purge', 'isa-support:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgomp1:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libperl5.40:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libuv1t64:amd64', 'media-types', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'perl', 'perl-modules-5.40', 'python3', 'python3-minimal', 'python3.13', 'python3.13-minimal', 'readline-common', 'sse4.2-support'] 0m36.2s DUMP: dpkg: warning: ignoring request to remove isa-support which is not installed dpkg: warning: ignoring request to remove libexpat1 which is not installed dpkg: warning: ignoring request to remove libffi8 which is not installed dpkg: warning: ignoring request to remove libgdbm-compat4t64 which is not installed dpkg: warning: ignoring request to remove libgdbm6t64 which is not installed dpkg: warning: ignoring request to remove libgomp1 which is not installed dpkg: warning: ignoring request to remove liblmdb0 which is not installed dpkg: warning: ignoring request to remove libmbedcrypto16 which is not installed dpkg: warning: ignoring request to remove libmbedtls21 which is not installed dpkg: warning: ignoring request to remove libmbedx509-7 which is not installed dpkg: warning: ignoring request to remove libncbi-vdb3 which is not installed dpkg: warning: ignoring request to remove libncursesw6 which is not installed dpkg: warning: ignoring request to remove libnghttp2-14 which is not installed dpkg: warning: ignoring request to remove libperl5.40 which is not installed dpkg: warning: ignoring request to remove libpython3-stdlib which is not installed (Reading database ... 4948 files and directories currently installed.) Purging configuration files for libpython3.13-minimal:amd64 (3.13.12-1) ... dpkg: warning: ignoring request to remove libpython3.13-stdlib which is not installed Purging configuration files for libreadline8t64:amd64 (8.3-4) ... dpkg: warning: ignoring request to remove libuv1t64 which is not installed Purging configuration files for media-types (14.0.0) ... Purging configuration files for ncbi-data (6.1.20170106+dfsg2-7) ... Purging configuration files for ncbi-vdb-data (3.2.1+dfsg-2) ... Purging configuration files for netbase (6.5) ... Purging configuration files for perl (5.40.1-7) ... dpkg: warning: ignoring request to remove perl-modules-5.40 which is not installed Purging configuration files for python3 (3.13.9-3) ... dpkg: warning: ignoring request to remove python3-minimal which is not installed dpkg: warning: ignoring request to remove python3.13 which is not installed Purging configuration files for python3.13-minimal (3.13.12-1) ... Purging configuration files for readline-common (8.3-4) ... Purging configuration files for sse4.2-support (27+b1) ... 0m36.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'dpkg', '--purge', 'isa-support:amd64', 'libexpat1:amd64', 'libffi8:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgomp1:amd64', 'liblmdb0:amd64', 'libmbedcrypto16:amd64', 'libmbedtls21:amd64', 'libmbedx509-7:amd64', 'libncbi-vdb3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libperl5.40:amd64', 'libpython3-stdlib:amd64', 'libpython3.13-minimal:amd64', 'libpython3.13-stdlib:amd64', 'libreadline8t64:amd64', 'libuv1t64:amd64', 'media-types', 'ncbi-data', 'ncbi-vdb-data', 'netbase', 'perl', 'perl-modules-5.40', 'python3', 'python3-minimal', 'python3.13', 'python3.13-minimal', 'readline-common', 'sse4.2-support'] 0m36.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'dpkg', '--purge', 'ncbi-blast+'] 0m36.2s DUMP: dpkg: warning: ignoring request to remove ncbi-blast+ which is not installed 0m36.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'dpkg', '--purge', 'ncbi-blast+'] 0m36.2s INFO: Running scripts post_purge 0m36.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_purge_exceptions'] 0m36.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_purge_exceptions'] 0m36.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'dpkg', '--purge', '--pending'] 0m36.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'dpkg', '--purge', '--pending'] 0m36.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'dpkg', '--remove', '--pending'] 0m36.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'dpkg', '--remove', '--pending'] 0m36.2s INFO: Running scripts post_test 0m36.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_test_exceptions'] 0m36.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'tmp/scripts/post_test_exceptions'] 0m36.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6'] 0m36.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6'] 0m36.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'dpkg-divert', '--list'] 0m36.5s DUMP: local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files 0m36.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'dpkg-divert', '--list'] 0m36.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-get', 'clean'] 0m36.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6', 'apt-get', 'clean'] 0m36.6s DEBUG: Recording chroot state 0m37.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6/dev/shm'] 0m37.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6/dev/shm'] 0m37.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6/dev/console'] 0m37.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6/dev/console'] 0m37.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6/dev/ptmx'] 0m37.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6/dev/ptmx'] 0m37.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6/dev/pts'] 0m37.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6/dev/pts'] 0m37.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6/proc'] 0m37.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6/proc'] 0m37.9s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6'] 0m38.0s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpgkl_cp_6'] 0m38.0s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpgkl_cp_6 0m38.0s INFO: PASS: Upgrading between Debian distributions. 0m38.0s INFO: PASS: All tests. 0m38.0s INFO: piuparts run ends. ret=0 End: 2026-03-09 10:16:21 GMT