Start: 2024-02-25 06:19:23 GMT [stable] Package: pycoqc Version: 2.5.2+dfsg-1 Installed-Size: 195 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-h5py-serial, python3-jinja2, python3-numpy, python3-pandas, python3-plotly (>= 4.1.0), python3-pysam, python3-scipy, python3-tqdm, python3:any, python3-h5py Description: computes metrics and generates Interactive QC plots Homepage: https://github.com/a-slide/pycoQC Description-md5: 311c31394d7f1c34ec5bf3baa30e71f3 Section: science Priority: optional Filename: pool/main/p/pycoqc/pycoqc_2.5.2+dfsg-1_all.deb Size: 36212 MD5sum: c3b9ce0b1b3ebc07a71199c32e6543d5 SHA256: 186215a37db0a2b6f73e5c47e110e309d500c0a8e2b45542f62db926b3944b13 [sid] Package: pycoqc Version: 2.5.2+dfsg-3 Installed-Size: 194 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-h5py-serial, python3-jinja2, python3-numpy, python3-pandas, python3-plotly (>= 4.1.0), python3-pysam, python3-scipy, python3-tqdm, python3:any, python3-h5py Description: computes metrics and generates Interactive QC plots Homepage: https://github.com/a-slide/pycoQC Description-md5: 311c31394d7f1c34ec5bf3baa30e71f3 Section: science Priority: optional Filename: pool/main/p/pycoqc/pycoqc_2.5.2+dfsg-3_all.deb Size: 36292 MD5sum: 194d696d9a9f86f0f9c78b480b78e21c SHA256: 8c6c0674e144f450a00e804e1f63e8c39c8154168a741e4c5079477f67140fd2 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d stable -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat --apt pycoqc=2.5.2+dfsg-3 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.3.1~202401311821~1.3-2-g28295102 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d stable -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat --apt pycoqc=2.5.2+dfsg-3 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp9be98qdm 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp9be98qdm 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m2.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m2.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp9be98qdm/proc'] 0m2.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp9be98qdm/proc'] 0m2.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp9be98qdm/dev/pts'] 0m2.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp9be98qdm/dev/pts'] 0m2.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp9be98qdm/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp9be98qdm/dev/ptmx'] 0m2.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp9be98qdm/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp9be98qdm/dev/ptmx'] 0m2.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp9be98qdm/dev/console'] 0m2.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp9be98qdm/dev/console'] 0m2.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp9be98qdm/dev/shm'] 0m2.6s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp9be98qdm/dev/shm'] 0m2.6s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m2.6s DEBUG: Created policy-rc.d and chmodded it. 0m2.6s DEBUG: Created resolv.conf. 0m2.6s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp9be98qdm/tmp/scripts/ 0m2.6s INFO: Running scripts post_chroot_unpack 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-get', 'update'] 0m7.1s DUMP: Get:1 http://deb.debian.org/debian bullseye InRelease [116 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 Packages [8068 kB] Get:3 http://deb.debian.org/debian bullseye/main Translation-en [6236 kB] Fetched 14.4 MB in 4s (4074 kB/s) Reading package lists... 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-get', 'update'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-get', '-yf', 'dist-upgrade'] 0m10.3s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: base-files libc-bin libc6 libgnutls30 perl-base tar tzdata 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 7841 kB of archives. After this operation, 44.0 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 base-files amd64 11.1+deb11u9 [70.2 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 perl-base amd64 5.32.1-4+deb11u3 [1628 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 tar amd64 1.34+dfsg-1+deb11u1 [847 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libc6 amd64 2.31-13+deb11u8 [2823 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 libc-bin amd64 2.31-13+deb11u8 [829 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libgnutls30 amd64 3.7.1-5+deb11u4 [1340 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 tzdata all 2024a-0+deb11u1 [304 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7841 kB in 0s (61.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../base-files_11.1+deb11u9_amd64.deb ... Unpacking base-files (11.1+deb11u9) over (11.1+deb11u8) ... Setting up base-files (11.1+deb11u9) ... Installing new version of config file /etc/debian_version ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../perl-base_5.32.1-4+deb11u3_amd64.deb ... Unpacking perl-base (5.32.1-4+deb11u3) over (5.32.1-4+deb11u2) ... Setting up perl-base (5.32.1-4+deb11u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../tar_1.34+dfsg-1+deb11u1_amd64.deb ... Unpacking tar (1.34+dfsg-1+deb11u1) over (1.34+dfsg-1) ... Setting up tar (1.34+dfsg-1+deb11u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../libc6_2.31-13+deb11u8_amd64.deb ... Unpacking libc6:amd64 (2.31-13+deb11u8) over (2.31-13+deb11u6) ... Setting up libc6:amd64 (2.31-13+deb11u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../libc-bin_2.31-13+deb11u8_amd64.deb ... Unpacking libc-bin (2.31-13+deb11u8) over (2.31-13+deb11u6) ... Setting up libc-bin (2.31-13+deb11u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.1-5+deb11u4_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.1-5+deb11u4) over (3.7.1-5+deb11u3) ... Setting up libgnutls30:amd64 (3.7.1-5+deb11u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../tzdata_2024a-0+deb11u1_all.deb ... Unpacking tzdata (2024a-0+deb11u1) over (2021a-1+deb11u10) ... Setting up tzdata (2024a-0+deb11u1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Feb 25 06:19:33 UTC 2024. Universal Time is now: Sun Feb 25 06:19:33 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Processing triggers for libc-bin (2.31-13+deb11u8) ... 0m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-get', '-yf', 'dist-upgrade'] 0m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m10.6s DUMP: 29fcf27583012b383113cec2bf757015 - 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m10.6s INFO: Running scripts post_setup 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_setup_dummy_users'] 0m11.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_setup_dummy_users'] 0m11.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_setup_forbid_home'] 0m11.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_setup_forbid_home'] 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_setup_force-unsafe-io'] 0m11.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_setup_force-unsafe-io'] 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_setup_minimize'] 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_setup_minimize'] 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_setup_squeeze-backports'] 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_setup_squeeze-backports'] 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_setup_zz_backports'] 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_setup_zz_backports'] 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m11.7s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u9 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u8 install ok installed libc6:amd64 libc6 2.31-13+deb11u8 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m11.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat 0m11.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9be98qdm'] 0m12.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9be98qdm'] 0m12.4s INFO: Running scripts is_testable 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/is_testable_uninstallable'] 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/is_testable_uninstallable'] 0m12.4s INFO: Running scripts pre_test 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_test_exceptions'] 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_test_exceptions'] 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_test_root_password'] 0m12.4s DUMP: New password: Retype new password: passwd: password updated successfully 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_test_root_password'] 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-cache', 'show', '--no-all-versions', 'pycoqc'] 0m12.7s DUMP: Package: pycoqc Version: 2.5.2+dfsg-1 Installed-Size: 195 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-h5py-serial, python3-jinja2, python3-numpy, python3-pandas, python3-plotly (>= 4.1.0), python3-pysam, python3-scipy, python3-tqdm, python3:any, python3-h5py Description-en: computes metrics and generates Interactive QC plots PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data . PycoQC relies on the sequencing_summary.txt file generated by Albacore and Guppy, but if needed it can also generates a summary file from basecalled fast5 files. The package supports 1D and 1D2 runs generated with Minion, Gridion and Promethion devices and basecalled with Albacore 1.2.1+ or Guppy 2.1.3+ Description-md5: 311c31394d7f1c34ec5bf3baa30e71f3 Homepage: https://github.com/a-slide/pycoQC Section: science Priority: optional Filename: pool/main/p/pycoqc/pycoqc_2.5.2+dfsg-1_all.deb Size: 36212 MD5sum: c3b9ce0b1b3ebc07a71199c32e6543d5 SHA256: 186215a37db0a2b6f73e5c47e110e309d500c0a8e2b45542f62db926b3944b13 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-cache', 'show', '--no-all-versions', 'pycoqc'] 0m12.7s INFO: apt-cache knows about the following packages: pycoqc 0m12.7s INFO: Running scripts pre_install 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_database-server'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_database-server'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_exceptions'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_exceptions'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_extras'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_extras'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_foreign_architecture'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-cache', 'policy'] 0m12.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.9,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-cache', 'policy'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-cache', 'policy', 'pycoqc'] 0m12.8s DUMP: pycoqc: Installed: (none) Candidate: 2.5.2+dfsg-1 Version table: 2.5.2+dfsg-1 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m12.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-cache', 'policy', 'pycoqc'] 0m12.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-get', '-y', 'install', 'pycoqc'] 0m46.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates libaec0 libblas3 libbrotli1 libcurl3-gnutls libdeflate0 libexpat1 libgfortran5 libhdf5-103-1 libhdf5-hl-100 libhts3 liblapack3 liblbfgsb0 libldap-2.4-2 liblzf1 libmpdec3 libncursesw6 libnghttp2-14 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libsz2 media-types openssl python3 python3-attr python3-certifi python3-chardet python3-dateutil python3-decorator python3-distutils python3-h5py python3-h5py-serial python3-idna python3-importlib-metadata python3-ipython-genutils python3-jinja2 python3-jsonschema python3-jupyter-core python3-lib2to3 python3-markupsafe python3-minimal python3-more-itertools python3-nbformat python3-numpy python3-pandas python3-pandas-lib python3-pkg-resources python3-plotly python3-pyrsistent python3-pysam python3-requests python3-retrying python3-scipy python3-setuptools python3-six python3-tqdm python3-traitlets python3-tz python3-urllib3 python3-zipp python3.9 python3.9-minimal readline-common Suggested packages: python3-doc python3-tk python3-venv python-attr-doc python-h5py-doc python-jinja2-doc python-jsonschema-doc python3-pip gcc gfortran python-numpy-doc python3-dev python3-numpy-dbg python3-pytest python-pandas-doc python3-statsmodels python3-matplotlib ipython3 python3-ipykernel python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-setuptools-doc python3.9-venv python3.9-doc binutils binfmt-support readline-doc Recommended packages: libldap-common libgpm2 publicsuffix libsasl2-modules python3-matplotlib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-xlwt python3-bs4 python3-html5lib python3-lxml python3-tables python3-numba g++ | c++-compiler python3-pil The following NEW packages will be installed: ca-certificates libaec0 libblas3 libbrotli1 libcurl3-gnutls libdeflate0 libexpat1 libgfortran5 libhdf5-103-1 libhdf5-hl-100 libhts3 liblapack3 liblbfgsb0 libldap-2.4-2 liblzf1 libmpdec3 libncursesw6 libnghttp2-14 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libsz2 media-types openssl pycoqc python3 python3-attr python3-certifi python3-chardet python3-dateutil python3-decorator python3-distutils python3-h5py python3-h5py-serial python3-idna python3-importlib-metadata python3-ipython-genutils python3-jinja2 python3-jsonschema python3-jupyter-core python3-lib2to3 python3-markupsafe python3-minimal python3-more-itertools python3-nbformat python3-numpy python3-pandas python3-pandas-lib python3-pkg-resources python3-plotly python3-pyrsistent python3-pysam python3-requests python3-retrying python3-scipy python3-setuptools python3-six python3-tqdm python3-traitlets python3-tz python3-urllib3 python3-zipp python3.9 python3.9-minimal readline-common 0 upgraded, 73 newly installed, 0 to remove and 0 not upgraded. Need to get 40.8 MB of archives. After this operation, 201 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.2+20201114-2+deb11u2 [132 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1w-0+deb11u1 [859 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 libaec0 amd64 1.0.4-1 [20.3 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3+deb11u1 [153 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1+deb11u1 [69.1 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1+deb11u1 [106 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3+deb11u1 [232 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1+deb11u1 [77.2 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:25 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+deb11u11 [344 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 libquadmath0 amd64 10.2.1-6 [145 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 libsz2 amd64 1.0.4-1 [6760 B] Get:32 http://deb.debian.org/debian bullseye/main amd64 libhdf5-103-1 amd64 1.10.6+repack-4+deb11u1 [1189 kB] Get:33 http://deb.debian.org/debian bullseye/main amd64 libhdf5-hl-100 amd64 1.10.6+repack-4+deb11u1 [81.8 kB] Get:34 http://deb.debian.org/debian bullseye/main amd64 libhts3 amd64 1.11-4 [378 kB] Get:35 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3+deb11u1 [2166 kB] Get:36 http://deb.debian.org/debian bullseye/main amd64 liblbfgsb0 amd64 3.0+dfsg.3-9 [28.5 kB] Get:37 http://deb.debian.org/debian bullseye/main amd64 liblzf1 amd64 3.6-3 [10.2 kB] Get:38 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get:39 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get:40 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get:41 http://deb.debian.org/debian bullseye/main amd64 python3-h5py-serial amd64 2.10.0-9+b2 [655 kB] Get:42 http://deb.debian.org/debian bullseye/main amd64 python3-markupsafe amd64 1.1.1-1+b3 [15.2 kB] Get:43 http://deb.debian.org/debian bullseye/main amd64 python3-jinja2 all 2.11.3-1 [114 kB] Get:44 http://deb.debian.org/debian bullseye/main amd64 python3-dateutil all 2.8.1-6 [79.2 kB] Get:45 http://deb.debian.org/debian bullseye/main amd64 python3-tz all 2021.1-1 [34.8 kB] Get:46 http://deb.debian.org/debian bullseye/main amd64 python3-pandas-lib amd64 1.1.5+dfsg-2 [3287 kB] Get:47 http://deb.debian.org/debian bullseye/main amd64 python3-pandas all 1.1.5+dfsg-2 [2096 kB] Get:48 http://deb.debian.org/debian bullseye/main amd64 python3-certifi all 2020.6.20-1 [151 kB] Get:49 http://deb.debian.org/debian bullseye/main amd64 python3-chardet all 4.0.0-1 [99.0 kB] Get:50 http://deb.debian.org/debian bullseye/main amd64 python3-idna all 2.10-1 [37.4 kB] Get:51 http://deb.debian.org/debian bullseye/main amd64 python3-urllib3 all 1.26.5-1~exp1 [114 kB] Get:52 http://deb.debian.org/debian bullseye/main amd64 python3-requests all 2.25.1+dfsg-2 [69.3 kB] Get:53 http://deb.debian.org/debian bullseye/main amd64 python3-decorator all 4.4.2-2 [15.8 kB] Get:54 http://deb.debian.org/debian bullseye/main amd64 python3-ipython-genutils all 0.2.0-4 [21.4 kB] Get:55 http://deb.debian.org/debian bullseye/main amd64 python3-attr all 20.3.0-1 [52.9 kB] Get:56 http://deb.debian.org/debian bullseye/main amd64 python3-more-itertools all 4.2.0-3 [42.7 kB] Get:57 http://deb.debian.org/debian bullseye/main amd64 python3-zipp all 1.0.0-3 [6060 B] Get:58 http://deb.debian.org/debian bullseye/main amd64 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get:59 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get:60 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get:61 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Get:62 http://deb.debian.org/debian bullseye/main amd64 python3-pyrsistent amd64 0.15.5-1+b3 [59.1 kB] Get:63 http://deb.debian.org/debian bullseye/main amd64 python3-jsonschema all 3.2.0-3 [46.3 kB] Get:64 http://deb.debian.org/debian bullseye/main amd64 python3-traitlets all 5.0.5-1 [84.4 kB] Get:65 http://deb.debian.org/debian bullseye/main amd64 python3-jupyter-core all 4.7.1-1+deb11u1 [44.2 kB] Get:66 http://deb.debian.org/debian bullseye/main amd64 python3-nbformat all 5.1.2-1 [51.6 kB] Get:67 http://deb.debian.org/debian bullseye/main amd64 python3-retrying all 1.3.3-4 [8876 B] Get:68 http://deb.debian.org/debian bullseye/main amd64 python3-plotly all 4.14.3+dfsg-1 [2450 kB] Get:69 http://deb.debian.org/debian bullseye/main amd64 python3-pysam amd64 0.15.4+ds-3+b2 [1536 kB] Get:70 http://deb.debian.org/debian bullseye/main amd64 python3-scipy amd64 1.6.0-2 [12.3 MB] Get:71 http://deb.debian.org/debian bullseye/main amd64 python3-tqdm all 4.57.0-2 [93.2 kB] Get:72 http://deb.debian.org/debian bullseye/main amd64 python3-h5py all 2.10.0-9 [11.4 kB] Get:73 http://deb.debian.org/debian bullseye/main amd64 pycoqc all 2.5.2+dfsg-1 [36.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.8 MB in 1s (81.1 MB/s) Selecting previously unselected package libpython3.9-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6672 files and directories currently installed.) Preparing to unpack .../libpython3.9-minimal_3.9.2-1_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.2.10-2+deb11u5_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2+deb11u5) ... Selecting previously unselected package python3.9-minimal. 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Unpacking libsqlite3-0:amd64 (3.34.1-3) ... Selecting previously unselected package libpython3.9-stdlib:amd64. Preparing to unpack .../7-libpython3.9-stdlib_3.9.2-1_amd64.deb ... Unpacking libpython3.9-stdlib:amd64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../8-python3.9_3.9.2-1_amd64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.9.2-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 7404 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_amd64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package openssl. Preparing to unpack .../01-openssl_1.1.1w-0+deb11u1_amd64.deb ... Unpacking openssl (1.1.1w-0+deb11u1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../02-ca-certificates_20210119_all.deb ... Unpacking ca-certificates (20210119) ... Selecting previously unselected package libaec0:amd64. Preparing to unpack .../03-libaec0_1.0.4-1_amd64.deb ... Unpacking libaec0:amd64 (1.0.4-1) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../04-libblas3_3.9.0-3+deb11u1_amd64.deb ... Unpacking libblas3:amd64 (3.9.0-3+deb11u1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../05-libbrotli1_1.0.9-2+b2_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../06-libsasl2-modules-db_2.1.27+dfsg-2.1+deb11u1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../07-libsasl2-2_2.1.27+dfsg-2.1+deb11u1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../08-libldap-2.4-2_2.4.57+dfsg-3+deb11u1_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../09-libnghttp2-14_1.43.0-1+deb11u1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../10-libpsl5_0.21.0-1.2_amd64.deb ... Unpacking libpsl5:amd64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../11-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../12-libssh2-1_1.9.0-2_amd64.deb ... Unpacking libssh2-1:amd64 (1.9.0-2) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../13-libcurl3-gnutls_7.74.0-1.3+deb11u11_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u11) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../14-libdeflate0_1.7-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.7-1) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../15-libquadmath0_10.2.1-6_amd64.deb ... Unpacking libquadmath0:amd64 (10.2.1-6) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../16-libgfortran5_10.2.1-6_amd64.deb ... Unpacking libgfortran5:amd64 (10.2.1-6) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../17-libsz2_1.0.4-1_amd64.deb ... Unpacking libsz2:amd64 (1.0.4-1) ... Selecting previously unselected package libhdf5-103-1:amd64. Preparing to unpack .../18-libhdf5-103-1_1.10.6+repack-4+deb11u1_amd64.deb ... Unpacking libhdf5-103-1:amd64 (1.10.6+repack-4+deb11u1) ... Selecting previously unselected package libhdf5-hl-100:amd64. Preparing to unpack .../19-libhdf5-hl-100_1.10.6+repack-4+deb11u1_amd64.deb ... Unpacking libhdf5-hl-100:amd64 (1.10.6+repack-4+deb11u1) ... Selecting previously unselected package libhts3:amd64. Preparing to unpack .../20-libhts3_1.11-4_amd64.deb ... Unpacking libhts3:amd64 (1.11-4) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../21-liblapack3_3.9.0-3+deb11u1_amd64.deb ... Unpacking liblapack3:amd64 (3.9.0-3+deb11u1) ... Selecting previously unselected package liblbfgsb0:amd64. Preparing to unpack .../22-liblbfgsb0_3.0+dfsg.3-9_amd64.deb ... Unpacking liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Selecting previously unselected package liblzf1:amd64. Preparing to unpack .../23-liblzf1_3.6-3_amd64.deb ... Unpacking liblzf1:amd64 (3.6-3) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../24-python3-pkg-resources_52.0.0-4_all.deb ... Unpacking python3-pkg-resources (52.0.0-4) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../25-python3-numpy_1%3a1.19.5-1_amd64.deb ... Unpacking python3-numpy (1:1.19.5-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../26-python3-six_1.16.0-2_all.deb ... Unpacking python3-six (1.16.0-2) ... Selecting previously unselected package python3-h5py-serial. Preparing to unpack .../27-python3-h5py-serial_2.10.0-9+b2_amd64.deb ... Unpacking python3-h5py-serial (2.10.0-9+b2) ... Selecting previously unselected package python3-markupsafe. Preparing to unpack .../28-python3-markupsafe_1.1.1-1+b3_amd64.deb ... Unpacking python3-markupsafe (1.1.1-1+b3) ... Selecting previously unselected package python3-jinja2. Preparing to unpack .../29-python3-jinja2_2.11.3-1_all.deb ... Unpacking python3-jinja2 (2.11.3-1) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../30-python3-dateutil_2.8.1-6_all.deb ... Unpacking python3-dateutil (2.8.1-6) ... Selecting previously unselected package python3-tz. Preparing to unpack .../31-python3-tz_2021.1-1_all.deb ... Unpacking python3-tz (2021.1-1) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../32-python3-pandas-lib_1.1.5+dfsg-2_amd64.deb ... Unpacking python3-pandas-lib:amd64 (1.1.5+dfsg-2) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../33-python3-pandas_1.1.5+dfsg-2_all.deb ... Unpacking python3-pandas (1.1.5+dfsg-2) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../34-python3-certifi_2020.6.20-1_all.deb ... Unpacking python3-certifi (2020.6.20-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../35-python3-chardet_4.0.0-1_all.deb ... Unpacking python3-chardet (4.0.0-1) ... Selecting previously unselected package python3-idna. Preparing to unpack .../36-python3-idna_2.10-1_all.deb ... Unpacking python3-idna (2.10-1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../37-python3-urllib3_1.26.5-1~exp1_all.deb ... Unpacking python3-urllib3 (1.26.5-1~exp1) ... Selecting previously unselected package python3-requests. Preparing to unpack .../38-python3-requests_2.25.1+dfsg-2_all.deb ... Unpacking python3-requests (2.25.1+dfsg-2) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../39-python3-decorator_4.4.2-2_all.deb ... Unpacking python3-decorator (4.4.2-2) ... Selecting previously unselected package python3-ipython-genutils. Preparing to unpack .../40-python3-ipython-genutils_0.2.0-4_all.deb ... Unpacking python3-ipython-genutils (0.2.0-4) ... Selecting previously unselected package python3-attr. Preparing to unpack .../41-python3-attr_20.3.0-1_all.deb ... Unpacking python3-attr (20.3.0-1) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../42-python3-more-itertools_4.2.0-3_all.deb ... Unpacking python3-more-itertools (4.2.0-3) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../43-python3-zipp_1.0.0-3_all.deb ... Unpacking python3-zipp (1.0.0-3) ... Selecting previously unselected package python3-importlib-metadata. Preparing to unpack .../44-python3-importlib-metadata_1.6.0-2_all.deb ... Unpacking python3-importlib-metadata (1.6.0-2) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../45-python3-lib2to3_3.9.2-1_all.deb ... Unpacking python3-lib2to3 (3.9.2-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../46-python3-distutils_3.9.2-1_all.deb ... Unpacking python3-distutils (3.9.2-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../47-python3-setuptools_52.0.0-4_all.deb ... Unpacking python3-setuptools (52.0.0-4) ... Selecting previously unselected package python3-pyrsistent:amd64. Preparing to unpack .../48-python3-pyrsistent_0.15.5-1+b3_amd64.deb ... Unpacking python3-pyrsistent:amd64 (0.15.5-1+b3) ... Selecting previously unselected package python3-jsonschema. Preparing to unpack .../49-python3-jsonschema_3.2.0-3_all.deb ... Unpacking python3-jsonschema (3.2.0-3) ... Selecting previously unselected package python3-traitlets. Preparing to unpack .../50-python3-traitlets_5.0.5-1_all.deb ... Unpacking python3-traitlets (5.0.5-1) ... Selecting previously unselected package python3-jupyter-core. Preparing to unpack .../51-python3-jupyter-core_4.7.1-1+deb11u1_all.deb ... Unpacking python3-jupyter-core (4.7.1-1+deb11u1) ... Selecting previously unselected package python3-nbformat. Preparing to unpack .../52-python3-nbformat_5.1.2-1_all.deb ... Unpacking python3-nbformat (5.1.2-1) ... Selecting previously unselected package python3-retrying. Preparing to unpack .../53-python3-retrying_1.3.3-4_all.deb ... Unpacking python3-retrying (1.3.3-4) ... Selecting previously unselected package python3-plotly. Preparing to unpack .../54-python3-plotly_4.14.3+dfsg-1_all.deb ... Unpacking python3-plotly (4.14.3+dfsg-1) ... Selecting previously unselected package python3-pysam. Preparing to unpack .../55-python3-pysam_0.15.4+ds-3+b2_amd64.deb ... Unpacking python3-pysam (0.15.4+ds-3+b2) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../56-python3-scipy_1.6.0-2_amd64.deb ... Unpacking python3-scipy (1.6.0-2) ... Selecting previously unselected package python3-tqdm. Preparing to unpack .../57-python3-tqdm_4.57.0-2_all.deb ... Unpacking python3-tqdm (4.57.0-2) ... Selecting previously unselected package python3-h5py. Preparing to unpack .../58-python3-h5py_2.10.0-9_all.deb ... Unpacking python3-h5py (2.10.0-9) ... Selecting previously unselected package pycoqc. Preparing to unpack .../59-pycoqc_2.5.2+dfsg-1_all.deb ... Unpacking pycoqc (2.5.2+dfsg-1) ... Setting up media-types (4.0.0) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libsqlite3-0:amd64 (3.34.1-3) ... Setting up libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Setting up libdeflate0:amd64 (1.7-1) ... Setting up libaec0:amd64 (1.0.4-1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libblas3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up liblzf1:amd64 (3.6-3) ... Setting up libquadmath0:amd64 (10.2.1-6) ... Setting up libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libssh2-1:amd64 (1.9.0-2) ... Setting up openssl (1.1.1w-0+deb11u1) ... Setting up readline-common (8.1-1) ... Setting up libsz2:amd64 (1.0.4-1) ... Setting up liblapack3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libreadline8:amd64 (8.1-1) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Setting up libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u11) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libhdf5-103-1:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Setting up libhdf5-hl-100:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libhts3:amd64 (1.11-4) ... Setting up python3.9 (3.9.2-1) ... Setting up python3 (3.9.2-3) ... Setting up python3-markupsafe (1.1.1-1+b3) ... Setting up python3-tz (2021.1-1) ... Setting up python3-six (1.16.0-2) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-jinja2 (2.11.3-1) ... Setting up python3-certifi (2020.6.20-1) ... Setting up python3-idna (2.10-1) ... Setting up python3-urllib3 (1.26.5-1~exp1) ... Setting up python3-pyrsistent:amd64 (0.15.5-1+b3) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-attr (20.3.0-1) ... Setting up python3-pysam (0.15.4+ds-3+b2) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-ipython-genutils (0.2.0-4) ... Setting up python3-tqdm (4.57.0-2) ... Setting up python3-retrying (1.3.3-4) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-chardet (4.0.0-1) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-traitlets (5.0.5-1) ... Setting up python3-jupyter-core (4.7.1-1+deb11u1) ... Setting up python3-scipy (1.6.0-2) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up python3-pandas-lib:amd64 (1.1.5+dfsg-2) ... Setting up python3-h5py-serial (2.10.0-9+b2) ... Setting up python3-pandas (1.1.5+dfsg-2) ... Setting up python3-jsonschema (3.2.0-3) ... Setting up python3-h5py (2.10.0-9) ... Setting up python3-nbformat (5.1.2-1) ... Setting up python3-plotly (4.14.3+dfsg-1) ... Setting up pycoqc (2.5.2+dfsg-1) ... Processing triggers for libc-bin (2.31-13+deb11u8) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m46.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-get', '-y', 'install', 'pycoqc'] 0m46.3s INFO: Running scripts post_install 0m46.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_install_exceptions'] 0m46.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_install_exceptions'] 0m46.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9be98qdm'] 0m48.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9be98qdm'] 0m48.5s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp9be98qdm to sid 0m48.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m48.5s INFO: Running scripts pre_distupgrade 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_distupgrade_exceptions'] 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_distupgrade_exceptions'] 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m48.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m48.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m48.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m48.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m48.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m48.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-get', 'update'] 0m53.1s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9750 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7154 kB] Fetched 17.1 MB in 3s (5040 kB/s) Reading package lists... 0m53.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-get', 'update'] 0m53.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-get', '-yf', 'dist-upgrade'] 2m23.8s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libldap-2.4-2 libmpdec3 libpython3.9-minimal libpython3.9-stdlib libquadmath0 python3-ipython-genutils python3-pyrsistent python3-retrying python3.9 python3.9-minimal Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libsemanage1 The following NEW packages will be installed: gcc-14-base libcap2 libcurl4 libffi8 libfile-find-rule-perl libgdbm-compat4 libgdbm6 libhtscodecs2 libldap-2.5-0 libmd0 libnumber-compare-perl libperl5.38 libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libsemanage2 libsepol2 libssl3 libtext-glob-perl libunistring5 netbase perl perl-modules-5.38 python3-charset-normalizer python3-editables python3-fastjsonschema python3-hatch-vcs python3-hatchling python3-jsonschema-specifications python3-packaging python3-pathspec python3-platformdirs python3-pluggy python3-referencing python3-rpds-py python3-setuptools-scm python3-tenacity python3-trove-classifiers python3-typing-extensions python3.11 python3.11-minimal python3.12 python3.12-minimal usrmerge The following packages will be upgraded: adduser apt base-files base-passwd bash bsdutils ca-certificates coreutils dash debconf debian-archive-keyring debianutils diffutils dpkg e2fsprogs findutils gcc-10-base gcc-9-base gpgv grep gzip hostname init-system-helpers libacl1 libaec0 libapt-pkg6.0 libattr1 libaudit-common libaudit1 libblas3 libblkid1 libbrotli1 libbz2-1.0 libc-bin libc6 libcap-ng0 libcom-err2 libcrypt1 libcurl3-gnutls libdb5.3 libdebconfclient0 libdeflate0 libexpat1 libext2fs2 libgcc-s1 libgcrypt20 libgfortran5 libgmp10 libgnutls30 libgpg-error0 libgssapi-krb5-2 libhdf5-103-1 libhdf5-hl-100 libhogweed6 libhts3 libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblz4-1 liblzf1 liblzma5 libmount1 libmpdec3 libncursesw6 libnettle8 libnghttp2-14 libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpcre3 libpsl5 libpython3-stdlib libquadmath0 libreadline8 libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libssh2-1 libstdc++6 libsystemd0 libsz2 libtasn1-6 libtinfo6 libtirpc-common libtirpc3 libudev1 libuuid1 libxxhash0 libzstd1 login logsave lsb-base mawk media-types mount ncurses-base ncurses-bin openssl passwd perl-base pycoqc python3 python3-attr python3-certifi python3-chardet python3-dateutil python3-decorator python3-distutils python3-h5py python3-h5py-serial python3-idna python3-importlib-metadata python3-ipython-genutils python3-jinja2 python3-jsonschema python3-jupyter-core python3-lib2to3 python3-markupsafe python3-minimal python3-more-itertools python3-nbformat python3-numpy python3-pandas python3-pandas-lib python3-pkg-resources python3-plotly python3-pyrsistent python3-pysam python3-requests python3-scipy python3-setuptools python3-six python3-tqdm python3-traitlets python3-tz python3-urllib3 python3-zipp readline-common sed sysvinit-utils tar tzdata util-linux zlib1g 157 upgraded, 45 newly installed, 1 to remove and 0 not upgraded. Need to get 111 MB of archives. After this operation, 259 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 base-files amd64 13 [70.6 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.37-15 [2750 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.37-15 [602 kB] Get:4 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14-20240201-3 [42.3 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14-20240201-3 [71.6 kB] Get:6 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.16 [88.9 kB] Get:7 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2.21-2 [1492 kB] Get:8 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.39.3-6 [96.9 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2+b1 [559 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libssl3 amd64 3.1.5-1 [2063 kB] Get:11 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.4-3+b1 [2950 kB] Get:12 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.4.5-0.3 [240 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libmd0 amd64 1.1.0-2 [35.8 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.5+dfsg2-2 [295 kB] Get:15 http://deb.debian.org/debian sid/main amd64 tar amd64 1.35+dfsg-3 [813 kB] Get:16 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.22.4 [1509 kB] Get:17 http://deb.debian.org/debian sid/main amd64 dash amd64 0.5.12-6 [92.1 kB] Get:18 http://deb.debian.org/debian sid/main amd64 diffutils amd64 1:3.10-1 [375 kB] Get:19 http://deb.debian.org/debian sid/main amd64 findutils amd64 4.9.0-5 [636 kB] Get:20 http://deb.debian.org/debian sid/main amd64 grep amd64 3.11-4 [431 kB] Get:21 http://deb.debian.org/debian sid/main amd64 gzip amd64 1.12-1 [140 kB] Get:22 http://deb.debian.org/debian sid/main amd64 hostname amd64 3.23+nmu2 [10.6 kB] Get:23 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.13+dfsg1-4 [616 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.4+20240113-1 [135 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.4+20240113-1 [342 kB] Get:26 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.4+20240113-1 [431 kB] Get:27 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.38.2-3 [1643 kB] Get:28 http://deb.debian.org/debian sid/main amd64 sed amd64 4.9-2 [329 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.39.3-6 [159 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.42-4+b1 [262 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.5-2 [74.8 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.39.3-6 [190 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.39.3-6 [117 kB] Get:34 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.39.3-6 [1230 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.271+b1 [10.2 kB] Get:36 http://deb.debian.org/debian sid/main amd64 base-passwd amd64 3.6.3 [50.8 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.47-3 [77.8 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.10.3-2 [708 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14-20240201-3 [714 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libbz2-1.0 amd64 1.0.8-5+b2 [38.2 kB] Get:41 http://deb.debian.org/debian sid/main amd64 liblz4-1 amd64 1.9.4-1+b2 [61.6 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.66-5 [27.4 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 255.3-2 [362 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 255.3-2 [124 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.2-2+b1 [26.6 kB] Get:46 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.3.dfsg-3+b1 [87.8 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0 amd64 2.7.12 [983 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libnettle8 amd64 3.9.1-2+b1 [296 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.3-4 [418 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.1-2 [421 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libhogweed6 amd64 3.9.1-2+b1 [328 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.7-2 [128 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.19.0-3+b2 [48.9 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libgnutls30 amd64 3.8.3-1 [1425 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.5-1 [9908 B] Get:57 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.5-2 [277 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.5-1+b2 [90.3 kB] Get:59 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.13+dfsg1-4 [973 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:3.1.2-2 [11.3 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.8.4-2 [16.9 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:3.1.2-2 [48.4 kB] Get:63 http://deb.debian.org/debian sid/main amd64 debconf all 1.5.86 [119 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.5.2-9.1+b1 [65.8 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.36-4 [89.8 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.5.2-9.1+b1 [50.1 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.5.2-9.1+b1 [265 kB] Get:68 http://deb.debian.org/debian sid/main amd64 adduser all 3.137 [140 kB] Get:69 http://deb.debian.org/debian sid/main amd64 gpgv amd64 2.2.40-1.1+b1 [649 kB] Get:70 http://deb.debian.org/debian sid/main amd64 debian-archive-keyring all 2023.4 [161 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.5.5-1 [47.0 kB] Get:72 http://deb.debian.org/debian sid/main amd64 apt amd64 2.7.12 [1368 kB] Get:73 http://deb.debian.org/debian sid/main amd64 perl-modules-5.38 all 5.38.2-3 [2899 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libgdbm6 amd64 1.23-5+b1 [72.8 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4 amd64 1.23-5+b1 [48.5 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libdb5.3 amd64 5.3.28+dfsg2-4+b1 [697 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libperl5.38 amd64 5.38.2-3 [4275 kB] Get:78 http://deb.debian.org/debian sid/main amd64 perl amd64 5.38.2-3 [236 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:80 http://deb.debian.org/debian sid/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:81 http://deb.debian.org/debian sid/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get:82 http://deb.debian.org/debian sid/main amd64 usrmerge all 39 [13.1 kB] Get:83 http://deb.debian.org/debian sid/main amd64 init-system-helpers all 1.66 [39.0 kB] Get:84 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.4+20240113-1 [268 kB] Get:85 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.08-6 [32.1 kB] Get:86 http://deb.debian.org/debian sid/main amd64 lsb-base all 11.6 [4584 B] Get:87 http://deb.debian.org/debian sid/main amd64 logsave amd64 1.47.0-2+b1 [19.9 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libext2fs2 amd64 1.47.0-2+b1 [205 kB] Get:89 http://deb.debian.org/debian sid/main amd64 e2fsprogs amd64 1.47.0-2+b1 [572 kB] Get:90 http://deb.debian.org/debian sid/main amd64 mount amd64 2.39.3-6 [143 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.8-1 [817 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.0-1 [101 kB] Get:93 http://deb.debian.org/debian sid/main amd64 python3.11-minimal amd64 3.11.8-1 [2037 kB] Get:94 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.11.4-6 [19.5 MB] Get:95 http://deb.debian.org/debian sid/main amd64 libhts3 amd64 1.19+ds-1 [447 kB] Get:96 http://deb.debian.org/debian sid/main amd64 python3-pysam amd64 0.22.0+ds-1+b1 [4110 kB] Get:97 http://deb.debian.org/debian sid/main amd64 python3-pyrsistent amd64 0.20.0-1+b1 [66.0 kB] Get:98 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 2.1.4+dfsg-5 [7883 kB] Get:99 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.24.2-2 [6299 kB] Get:100 http://deb.debian.org/debian sid/main amd64 python3-markupsafe amd64 2.1.5-1 [14.5 kB] Get:101 http://deb.debian.org/debian sid/main amd64 python3-h5py-serial amd64 3.10.0-1 [1399 kB] Get:102 http://deb.debian.org/debian sid/main amd64 python3-distutils all 3.11.5-1 [131 kB] Get:103 http://deb.debian.org/debian sid/main amd64 python3-lib2to3 all 3.11.5-1 [77.5 kB] Get:104 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.11.6-1 [26.2 kB] Get:105 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.11.6-1 [26.2 kB] Get:106 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get:107 http://deb.debian.org/debian sid/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get:108 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get:109 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:110 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:111 http://deb.debian.org/debian sid/main amd64 tzdata all 2024a-1 [255 kB] Get:112 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1 [10.7 kB] Get:113 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-5+b1 [135 kB] Get:114 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-5+b1 [333 kB] Get:115 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-5+b1 [80.0 kB] Get:116 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-5+b1 [33.2 kB] Get:117 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.0-2+b1 [20.1 kB] Get:118 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:119 http://deb.debian.org/debian sid/main amd64 libtirpc3 amd64 1.3.4+ds-1 [82.1 kB] Get:120 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-3 [40.0 kB] Get:121 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-3 [69.1 kB] Get:122 http://deb.debian.org/debian sid/main amd64 libreadline8 amd64 8.2-3+b1 [167 kB] Get:123 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.45.1-1 [894 kB] Get:124 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.39.3-6 [29.7 kB] Get:125 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.8-1 [1825 kB] Get:126 http://deb.debian.org/debian sid/main amd64 python3.11 amd64 3.11.8-1 [597 kB] Get:127 http://deb.debian.org/debian sid/main amd64 libpython3.12-minimal amd64 3.12.2-1 [807 kB] Get:128 http://deb.debian.org/debian sid/main amd64 python3.12-minimal amd64 3.12.2-1 [2186 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libpython3.12-stdlib amd64 3.12.2-1 [1929 kB] Get:130 http://deb.debian.org/debian sid/main amd64 python3.12 amd64 3.12.2-1 [653 kB] Get:131 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get:132 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14-20240201-3 [836 kB] Get:133 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get:134 http://deb.debian.org/debian sid/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b1 [29.1 kB] Get:135 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:136 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-4+b1 [19.7 kB] Get:137 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-4+b1 [57.0 kB] Get:138 http://deb.debian.org/debian sid/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5+b3 [184 kB] Get:139 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.59.0-1 [74.3 kB] Get:140 http://deb.debian.org/debian sid/main amd64 libpsl5 amd64 0.21.2-1+b1 [59.1 kB] Get:141 http://deb.debian.org/debian sid/main amd64 libssh2-1 amd64 1.11.0-4 [215 kB] Get:142 http://deb.debian.org/debian sid/main amd64 libcurl3-gnutls amd64 8.6.0-3 [421 kB] Get:143 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.19-1 [41.4 kB] Get:144 http://deb.debian.org/debian sid/main amd64 libhtscodecs2 amd64 1.6.0-1+b1 [93.0 kB] Get:145 http://deb.debian.org/debian sid/main amd64 libcurl4 amd64 8.6.0-3 [430 kB] Get:146 http://deb.debian.org/debian sid/main amd64 libaec0 amd64 1.1.2-1 [23.4 kB] Get:147 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.1.2-1 [7684 B] Get:148 http://deb.debian.org/debian sid/main amd64 libhdf5-103-1 amd64 1.10.10+repack-3+b1 [1243 kB] Get:149 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-100 amd64 1.10.10+repack-3+b1 [63.3 kB] Get:150 http://deb.debian.org/debian sid/main amd64 liblzf1 amd64 3.6-4 [10.1 kB] Get:151 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.11.6-1 [9224 B] Get:152 http://deb.debian.org/debian sid/main amd64 libpam-runtime all 1.5.2-9.1 [134 kB] Get:153 http://deb.debian.org/debian sid/main amd64 libacl1 amd64 2.3.2-1 [32.4 kB] Get:154 http://deb.debian.org/debian sid/main amd64 libattr1 amd64 1:2.5.2-1 [22.5 kB] Get:155 http://deb.debian.org/debian sid/main amd64 libpcre3 amd64 2:8.39-15+b1 [342 kB] Get:156 http://deb.debian.org/debian sid/main amd64 mawk amd64 1.3.4.20240123-1 [136 kB] Get:157 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.1.5-1 [1241 kB] Get:158 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:159 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 14-20240201-3 [147 kB] Get:160 http://deb.debian.org/debian sid/main amd64 gcc-10-base amd64 10.5.0-3 [36.6 kB] Get:161 http://deb.debian.org/debian sid/main amd64 gcc-9-base amd64 9.5.0-5 [28.8 kB] Get:162 http://deb.debian.org/debian sid/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:163 http://deb.debian.org/debian sid/main amd64 libss2 amd64 1.47.0-2+b1 [24.8 kB] Get:164 http://deb.debian.org/debian sid/main amd64 python3-jinja2 all 3.1.2-1 [119 kB] Get:165 http://deb.debian.org/debian sid/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:166 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.8.2-3 [78.4 kB] Get:167 http://deb.debian.org/debian sid/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get:168 http://deb.debian.org/debian sid/main amd64 python3-pandas all 2.1.4+dfsg-5 [3015 kB] Get:169 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2023.11.17-1 [155 kB] Get:170 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get:171 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.6-2 [37.0 kB] Get:172 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 1.26.18-2 [116 kB] Get:173 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:174 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get:175 http://deb.debian.org/debian sid/main amd64 python3-fastjsonschema all 2.19.0-1 [21.2 kB] Get:176 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.9.0-1 [63.9 kB] Get:177 http://deb.debian.org/debian sid/main amd64 python3-more-itertools all 10.2.0-1 [59.9 kB] Get:178 http://deb.debian.org/debian sid/main amd64 python3-zipp all 1.0.0-6 [6696 B] Get:179 http://deb.debian.org/debian sid/main amd64 python3-importlib-metadata all 4.12.0-1 [24.9 kB] Get:180 http://deb.debian.org/debian sid/main amd64 python3-attr all 23.2.0-1 [65.5 kB] Get:181 http://deb.debian.org/debian sid/main amd64 python3-editables all 0.5-1 [14.8 kB] Get:182 http://deb.debian.org/debian sid/main amd64 python3-packaging all 23.2-1 [44.8 kB] Get:183 http://deb.debian.org/debian sid/main amd64 python3-pathspec all 0.12.1-1 [28.1 kB] Get:184 http://deb.debian.org/debian sid/main amd64 python3-pluggy all 1.4.0-1 [26.2 kB] Get:185 http://deb.debian.org/debian sid/main amd64 python3-trove-classifiers all 2024.1.31-1 [9968 B] Get:186 http://deb.debian.org/debian sid/main amd64 python3-hatchling all 1.21.0-1 [48.4 kB] Get:187 http://deb.debian.org/debian sid/main amd64 python3-setuptools-scm all 8.0.4-2 [39.5 kB] Get:188 http://deb.debian.org/debian sid/main amd64 python3-hatch-vcs all 0.4.0-1 [8336 B] Get:189 http://deb.debian.org/debian sid/main amd64 python3-rpds-py amd64 0.12.0-3 [276 kB] Get:190 http://deb.debian.org/debian sid/main amd64 python3-referencing all 0.31.0-1 [22.2 kB] Get:191 http://deb.debian.org/debian sid/main amd64 python3-jsonschema-specifications all 2023.12.1-1 [8976 B] Get:192 http://deb.debian.org/debian sid/main amd64 python3-jsonschema all 4.19.2-2 [71.2 kB] Get:193 http://deb.debian.org/debian sid/main amd64 python3-platformdirs all 4.2.0-1 [15.9 kB] Get:194 http://deb.debian.org/debian sid/main amd64 python3-traitlets all 5.5.0-2 [90.7 kB] Get:195 http://deb.debian.org/debian sid/main amd64 python3-jupyter-core all 5.3.2-1 [31.5 kB] Get:196 http://deb.debian.org/debian sid/main amd64 python3-nbformat all 5.9.1-1 [45.1 kB] Get:197 http://deb.debian.org/debian sid/main amd64 python3-tenacity all 8.2.3-2 [43.8 kB] Get:198 http://deb.debian.org/debian sid/main amd64 python3-plotly all 5.15.0+dfsg1-1 [2213 kB] Get:199 http://deb.debian.org/debian sid/main amd64 python3-tqdm all 4.64.1-2 [93.7 kB] Get:200 http://deb.debian.org/debian sid/main amd64 python3-h5py all 3.10.0-1 [14.4 kB] Get:201 http://deb.debian.org/debian sid/main amd64 pycoqc all 2.5.2+dfsg-3 [36.3 kB] Get:202 http://deb.debian.org/debian sid/main amd64 python3-ipython-genutils all 0.2.0-6 [21.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 111 MB in 1s (91.5 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23589 files and directories currently installed.) Preparing to unpack .../archives/dpkg_1.22.4_amd64.deb ... Unpacking dpkg (1.22.4) over (1.20.13) ... Setting up dpkg (1.22.4) ... Installing new version of config file /etc/cron.daily/dpkg ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23583 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-6_amd64.deb ... Unpacking dash (0.5.12-6) over (0.5.11+git20200708+dd9ef66-5) ... Setting up dash (0.5.12-6) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23605 files and directories currently installed.) Preparing to unpack .../libblkid1_2.39.3-6_amd64.deb ... Unpacking libblkid1:amd64 (2.39.3-6) over (2.36.1-8+deb11u1) ... Setting up libblkid1:amd64 (2.39.3-6) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23610 files and directories currently installed.) Preparing to unpack .../util-linux_2.39.3-6_amd64.deb ... Unpacking util-linux (2.39.3-6) over (2.36.1-8+deb11u1) ... dpkg: warning: unable to delete old directory '/usr/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/usr/lib/udev': Directory not empty dpkg: warning: unable to delete old directory '/etc/init.d': Directory not empty Setting up util-linux (2.39.3-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23602 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.271+b1_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.271+b1) over (0.260) ... Setting up libdebconfclient0:amd64 (0.271+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23603 files and directories currently installed.) Preparing to unpack .../base-passwd_3.6.3_amd64.deb ... Unpacking base-passwd (3.6.3) over (3.5.51) ... Setting up base-passwd (3.6.3) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23606 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.9.4-1+b2_amd64.deb ... Unpacking liblz4-1:amd64 (1.9.4-1+b2) over (1.9.3-2) ... Setting up liblz4-1:amd64 (1.9.4-1+b2) ... Selecting previously unselected package libcap2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23607 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.66-5_amd64.deb ... Unpacking libcap2:amd64 (1:2.66-5) ... Setting up libcap2:amd64 (1:2.66-5) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23616 files and directories currently installed.) Preparing to unpack .../libudev1_255.3-2_amd64.deb ... Unpacking libudev1:amd64 (255.3-2) over (247.3-7+deb11u4) ... Setting up libudev1:amd64 (255.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23617 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.2-2+b1_amd64.deb ... Unpacking libxxhash0:amd64 (0.8.2-2+b1) over (0.8.0-2) ... Setting up libxxhash0:amd64 (0.8.2-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23618 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3+b1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.3.dfsg-3+b1) over (1:1.2.11.dfsg-2+deb11u2) ... Setting up zlib1g:amd64 (1:1.3.dfsg-3+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23619 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.7.12_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.7.12) over (2.2.4) ... Setting up libapt-pkg6.0:amd64 (2.7.12) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23619 files and directories currently installed.) Preparing to unpack .../libnettle8_3.9.1-2+b1_amd64.deb ... Unpacking libnettle8:amd64 (3.9.1-2+b1) over (3.7.3-1) ... Setting up libnettle8:amd64 (3.9.1-2+b1) ... Selecting previously unselected package libffi8:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23620 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.6-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.6-1) ... Setting up libffi8:amd64 (3.4.6-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23625 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.25.3-4_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.3-4) over (0.23.22-1) ... Setting up libp11-kit0:amd64 (0.25.3-4) ... Selecting previously unselected package libunistring5:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23625 files and directories currently installed.) Preparing to unpack .../libunistring5_1.1-2_amd64.deb ... Unpacking libunistring5:amd64 (1.1-2) ... Setting up libunistring5:amd64 (1.1-2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23632 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.7-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.7-2) over (2.3.0-5) ... Setting up libidn2-0:amd64 (2.3.7-2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23635 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.8.3-1_amd64.deb ... Unpacking libgnutls30:amd64 (3.8.3-1) over (3.7.1-5+deb11u4) ... Setting up libgnutls30:amd64 (3.8.3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23636 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.5-1_all.deb ... Unpacking libsemanage-common (3.5-1) over (3.1-1) ... Setting up libsemanage-common (3.5-1) ... Installing new version of config file /etc/selinux/semanage.conf ... Selecting previously unselected package libsepol2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23636 files and directories currently installed.) Preparing to unpack .../libsepol2_3.5-2_amd64.deb ... Unpacking libsepol2:amd64 (3.5-2) ... Setting up libsepol2:amd64 (3.5-2) ... Selecting previously unselected package libsemanage2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23640 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.5-1+b2_amd64.deb ... Unpacking libsemanage2:amd64 (3.5-1+b2) ... Setting up libsemanage2:amd64 (3.5-1+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23645 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.13+dfsg1-4_amd64.deb ... Unpacking passwd (1:4.13+dfsg1-4) over (1:4.8.1-1) ... Setting up passwd (1:4.13+dfsg1-4) ... Installing new version of config file /etc/default/useradd ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23679 files and directories currently installed.) Removing libsemanage1:amd64 (3.1-1+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23674 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a3.1.2-2_all.deb ... Unpacking libaudit-common (1:3.1.2-2) over (1:3.0-2) ... Setting up libaudit-common (1:3.1.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23674 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.4-2_amd64.deb ... Unpacking libcap-ng0:amd64 (0.8.4-2) over (0.7.9-2.2+b1) ... Setting up libcap-ng0:amd64 (0.8.4-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23675 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.1.2-2_amd64.deb ... Unpacking libaudit1:amd64 (1:3.1.2-2) over (1:3.0-2) ... Setting up libaudit1:amd64 (1:3.1.2-2) ... (Reading database ... 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Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Setting up libtirpc3:amd64 (1.3.4+ds-1) ... Setting up libcurl3-gnutls:amd64 (8.6.0-3) ... Setting up libhdf5-103-1:amd64 (1.10.10+repack-3+b1) ... Setting up libnsl2:amd64 (1.3.0-3) ... Setting up libhdf5-hl-100:amd64 (1.10.10+repack-3+b1) ... Setting up libhts3:amd64 (1.19+ds-1) ... Setting up libpython3.12-stdlib:amd64 (3.12.2-1) ... Setting up libpython3.11-stdlib:amd64 (3.11.8-1) ... Setting up python3.12 (3.12.2-1) ... Setting up libpython3-stdlib:amd64 (3.11.6-1) ... Setting up python3.11 (3.11.8-1) ... Setting up python3 (3.11.6-1) ... Setting up python3-editables (0.5-1) ... Setting up python3-markupsafe (2.1.5-1) ... Setting up python3-platformdirs (4.2.0-1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-4) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.2-1) ... Setting up python3-packaging (23.2-1) ... Setting up python3-certifi (2023.11.17-1) ... Setting up python3-idna (3.6-2) ... Setting up python3-typing-extensions (4.9.0-1) ... Setting up python3-urllib3 (1.26.18-2) ... Setting up python3-pluggy (1.4.0-1) ... Setting up python3-rpds-py (0.12.0-3) ... Setting up python3-fastjsonschema (2.19.0-1) ... Setting up python3-pyrsistent:amd64 (0.20.0-1+b1) ... Setting up python3-trove-classifiers (2024.1.31-1) ... Setting up python3-traitlets (5.5.0-2) ... Setting up python3-dateutil (2.8.2-3) ... Setting up python3-pathspec (0.12.1-1) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.11.5-1) ... python3.12: can't get files for byte-compilation Setting up python3-more-itertools (10.2.0-1) ... Setting up python3-attr (23.2.0-1) ... Setting up python3-pysam (0.22.0+ds-1+b1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-ipython-genutils (0.2.0-6) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-tenacity (8.2.3-2) ... Setting up python3-tqdm (4.64.1-2) ... Setting up python3-zipp (1.0.0-6) ... Setting up python3-setuptools-scm (8.0.4-2) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.31.0+dfsg-1) ... Setting up python3-numpy (1:1.24.2-2) ... Setting up python3-hatchling (1.21.0-1) ... Setting up python3-jupyter-core (5.3.2-1) ... Setting up python3-hatch-vcs (0.4.0-1) ... Setting up python3-referencing (0.31.0-1) ... Setting up python3-scipy (1.11.4-6) ... Setting up python3-importlib-metadata (4.12.0-1) ... Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-5) ... Setting up python3-h5py-serial (3.10.0-1) ... Setting up python3-pandas (2.1.4+dfsg-5) ... Setting up python3-h5py (3.10.0-1) ... Setting up python3-jsonschema-specifications (2023.12.1-1) ... Setting up python3-jsonschema (4.19.2-2) ... Setting up python3-nbformat (5.9.1-1) ... Setting up python3-plotly (5.15.0+dfsg1-1) ... Setting up pycoqc (2.5.2+dfsg-3) ... Processing triggers for libc-bin (2.37-15) ... Processing triggers for debianutils (5.16) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 2m23.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-get', '-yf', 'dist-upgrade'] 2m23.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m25.4s DUMP: 96e7054ed1dbeae3f1e3d79f505b1fc9 - 2m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-cache', 'show', '--no-all-versions', 'pycoqc'] 2m25.7s DUMP: Package: pycoqc Version: 2.5.2+dfsg-3 Installed-Size: 194 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3-h5py-serial, python3-jinja2, python3-numpy, python3-pandas, python3-plotly (>= 4.1.0), python3-pysam, python3-scipy, python3-tqdm, python3:any, python3-h5py Description-en: computes metrics and generates Interactive QC plots PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data . PycoQC relies on the sequencing_summary.txt file generated by Albacore and Guppy, but if needed it can also generates a summary file from basecalled fast5 files. The package supports 1D and 1D2 runs generated with Minion, Gridion and Promethion devices and basecalled with Albacore 1.2.1+ or Guppy 2.1.3+ Description-md5: 311c31394d7f1c34ec5bf3baa30e71f3 Homepage: https://github.com/a-slide/pycoQC Section: science Priority: optional Filename: pool/main/p/pycoqc/pycoqc_2.5.2+dfsg-3_all.deb Size: 36292 MD5sum: 194d696d9a9f86f0f9c78b480b78e21c SHA256: 8c6c0674e144f450a00e804e1f63e8c39c8154168a741e4c5079477f67140fd2 2m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-cache', 'show', '--no-all-versions', 'pycoqc'] 2m25.7s INFO: apt-cache knows about the following packages: pycoqc 2m25.7s INFO: Running scripts pre_install 2m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_database-server'] 2m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_database-server'] 2m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_exceptions'] 2m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_exceptions'] 2m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_extras'] 2m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_extras'] 2m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_foreign_architecture'] 2m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_foreign_architecture'] 2m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m25.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-cache', 'policy'] 2m25.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-cache', 'policy'] 2m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-cache', 'policy', 'pycoqc'] 2m25.8s DUMP: pycoqc: Installed: 2.5.2+dfsg-3 Candidate: 2.5.2+dfsg-3 Version table: *** 2.5.2+dfsg-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 2m25.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-cache', 'policy', 'pycoqc'] 2m25.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-get', '-y', 'install', 'pycoqc'] 2m26.4s DUMP: Reading package lists... Building dependency tree... Reading state information... pycoqc is already the newest version (2.5.2+dfsg-3). The following packages were automatically installed and are no longer required: libldap-2.4-2 libmpdec3 libpython3.9-minimal libpython3.9-stdlib libquadmath0 python3-ipython-genutils python3-pyrsistent python3-retrying python3.9 python3.9-minimal Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-get', '-y', 'install', 'pycoqc'] 2m26.4s INFO: Running scripts post_install 2m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_install_exceptions'] 2m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_install_exceptions'] 2m26.4s INFO: Running scripts post_distupgrade 2m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_distupgrade_exceptions'] 2m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_distupgrade_exceptions'] 2m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_distupgrade_zz_backports'] 2m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_distupgrade_zz_backports'] 2m26.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9be98qdm'] 2m29.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9be98qdm'] 2m29.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9be98qdm'] 2m32.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9be98qdm'] 2m32.6s INFO: Running scripts pre_install 2m32.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_database-server'] 2m32.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_database-server'] 2m32.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_exceptions'] 2m32.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_exceptions'] 2m32.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_extras'] 2m32.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_extras'] 2m32.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_foreign_architecture'] 2m32.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_foreign_architecture'] 2m32.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-cache', 'policy'] 2m32.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-cache', 'policy'] 2m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-cache', 'policy', 'pycoqc'] 2m32.8s DUMP: pycoqc: Installed: 2.5.2+dfsg-3 Candidate: 2.5.2+dfsg-3 Version table: *** 2.5.2+dfsg-3 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 2m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-cache', 'policy', 'pycoqc'] 2m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-get', '-y', 'install', 'pycoqc=2.5.2+dfsg-3'] 2m33.3s DUMP: Reading package lists... Building dependency tree... Reading state information... pycoqc is already the newest version (2.5.2+dfsg-3). The following packages were automatically installed and are no longer required: libldap-2.4-2 libmpdec3 libpython3.9-minimal libpython3.9-stdlib libquadmath0 python3-ipython-genutils python3-pyrsistent python3-retrying python3.9 python3.9-minimal Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-get', '-y', 'install', 'pycoqc=2.5.2+dfsg-3'] 2m33.3s INFO: Running scripts post_install 2m33.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_install_exceptions'] 2m33.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_install_exceptions'] 2m33.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9be98qdm'] 2m35.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9be98qdm'] 2m35.7s INFO: /bin converted to /usr/bin by /usr merge 2m35.7s INFO: /lib converted to /usr/lib by /usr merge 2m35.7s INFO: /lib/init converted to /usr/lib/init by /usr merge 2m35.7s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 2m35.7s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 2m35.7s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 2m35.7s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 2m35.7s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 2m35.7s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 2m35.7s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 2m35.7s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 2m35.7s INFO: /lib64 converted to /usr/lib64 by /usr merge 2m35.7s INFO: /sbin converted to /usr/sbin by /usr merge 2m38.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', '-ac', '--ignore-obsolete'] 2m40.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', '-ac', '--ignore-obsolete'] 2m40.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m40.6s DUMP: 0.15.6 2m40.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m40.6s INFO: Running adequate version 0.15.6 now. 2m40.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'pycoqc'] 2m40.8s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'pycoqc'] 2m40.8s INFO: Running scripts pre_remove 2m40.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m40.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m40.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m40.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m40.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m44.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m44.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m44.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m44.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m44.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m44.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_remove_exceptions'] 2m44.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/pre_remove_exceptions'] 2m44.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m44.6s DUMP: install ok installed adduser adduser 3.137 install ok installed apt apt 2.7.12 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.39.3-6 install ok installed ca-certificates ca-certificates 20240203 install ok installed coreutils coreutils 9.4-3+b1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.16 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.4 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed gcc-10-base:amd64 gcc-10-base 10.5.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240201-3 install ok installed gcc-9-base:amd64 gcc-9-base 9.5.0-5 install ok installed gpgv gpgv 2.2.40-1.1+b1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libaec0:amd64 libaec0 1.1.2-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.12 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2 install ok installed libblas3:amd64 libblas3 3.12.0-3 install ok installed libblkid1:amd64 libblkid1 2.39.3-6 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b2 install ok installed libc-bin libc-bin 2.37-15 install ok installed libc6:amd64 libc6 2.37-15 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 8.6.0-3 install ok installed libcurl4:amd64 libcurl4 8.6.0-3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-4+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b1 install ok installed libdeflate0:amd64 libdeflate0 1.19-1 install ok installed libexpat1:amd64 libexpat1 2.6.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240201-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-5+b1 install ok installed libgdbm6:amd64 libgdbm6 1.23-5+b1 install ok installed libgfortran5:amd64 libgfortran5 14-20240201-3 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30:amd64 libgnutls30 3.8.3-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-5+b1 install ok installed libhdf5-103-1:amd64 libhdf5-103-1 1.10.10+repack-3+b1 install ok installed libhdf5-hl-100:amd64 libhdf5-hl-100 1.10.10+repack-3+b1 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2+b1 install ok installed libhts3:amd64 libhts3 1.19+ds-1 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.6.0-1+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-5+b1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-5+b1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-5+b1 install ok installed liblapack3:amd64 liblapack3 3.12.0-3 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1+b1 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.57+dfsg-3+deb11u1 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-5+b3 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzf1:amd64 liblzf1 3.6-4 install ok installed liblzma5:amd64 liblzma5 5.4.5-0.3 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.39.3-6 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-2 install ok installed libncursesw6:amd64 libncursesw6 6.4+20240113-1 install ok installed libnettle8:amd64 libnettle8 3.9.1-2+b1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.59.0-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-3 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1+b1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libpcre3:amd64 libpcre3 2:8.39-15+b1 install ok installed libperl5.38:amd64 libperl5.38 5.38.2-3 install ok installed libpsl5:amd64 libpsl5 0.21.2-1+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.6-1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.8-1 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.8-1 install ok installed libpython3.12-minimal:amd64 libpython3.12-minimal 3.12.2-1 install ok installed libpython3.12-stdlib:amd64 libpython3.12-stdlib 3.12.2-1 install ok installed libpython3.9-minimal:amd64 libpython3.9-minimal 3.9.2-1 install ok installed libpython3.9-stdlib:amd64 libpython3.9-stdlib 3.9.2-1 install ok installed libquadmath0:amd64 libquadmath0 14-20240201-3 install ok installed libreadline8:amd64 libreadline8 8.2-3+b1 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-4+b1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-6 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.45.1-1 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssh2-1:amd64 libssh2-1 1.11.0-4 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libssl3:amd64 libssl3 3.1.5-1 install ok installed libstdc++6:amd64 libstdc++6 14-20240201-3 install ok installed libsystemd0:amd64 libsystemd0 255.3-2 install ok installed libsz2:amd64 libsz2 1.1.2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.4+ds-1 install ok installed libudev1:amd64 libudev1 255.3-2 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.3-6 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2+b1 install ok installed lsb-base lsb-base 11.6 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.39.3-6 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed netbase netbase 6.4 install ok installed openssl openssl 3.1.5-1 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl perl 5.38.2-3 install ok installed perl-base perl-base 5.38.2-3 install ok installed perl-modules-5.38 perl-modules-5.38 5.38.2-3 install ok installed pycoqc pycoqc 2.5.2+dfsg-3 install ok installed python3 python3 3.11.6-1 install ok installed python3-attr python3-attr 23.2.0-1 install ok installed python3-certifi python3-certifi 2023.11.17-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-1 install ok installed python3-charset-normalizer python3-charset-normalizer 3.3.2-1 install ok installed python3-dateutil python3-dateutil 2.8.2-3 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-distutils python3-distutils 3.11.5-1 install ok installed python3-editables python3-editables 0.5-1 install ok installed python3-fastjsonschema python3-fastjsonschema 2.19.0-1 install ok installed python3-h5py python3-h5py 3.10.0-1 install ok installed python3-h5py-serial python3-h5py-serial 3.10.0-1 install ok installed python3-hatch-vcs python3-hatch-vcs 0.4.0-1 install ok installed python3-hatchling python3-hatchling 1.21.0-1 install ok installed python3-idna python3-idna 3.6-2 install ok installed python3-importlib-metadata python3-importlib-metadata 4.12.0-1 install ok installed python3-ipython-genutils python3-ipython-genutils 0.2.0-6 install ok installed python3-jinja2 python3-jinja2 3.1.2-1 install ok installed python3-jsonschema python3-jsonschema 4.19.2-2 install ok installed python3-jsonschema-specifications python3-jsonschema-specifications 2023.12.1-1 install ok installed python3-jupyter-core python3-jupyter-core 5.3.2-1 install ok installed python3-lib2to3 python3-lib2to3 3.11.5-1 install ok installed python3-markupsafe python3-markupsafe 2.1.5-1 install ok installed python3-minimal python3-minimal 3.11.6-1 install ok installed python3-more-itertools python3-more-itertools 10.2.0-1 install ok installed python3-nbformat python3-nbformat 5.9.1-1 install ok installed python3-numpy python3-numpy 1:1.24.2-2 install ok installed python3-packaging python3-packaging 23.2-1 install ok installed python3-pandas python3-pandas 2.1.4+dfsg-5 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.1.4+dfsg-5 install ok installed python3-pathspec python3-pathspec 0.12.1-1 install ok installed python3-pkg-resources python3-pkg-resources 68.1.2-2 install ok installed python3-platformdirs python3-platformdirs 4.2.0-1 install ok installed python3-plotly python3-plotly 5.15.0+dfsg1-1 install ok installed python3-pluggy python3-pluggy 1.4.0-1 install ok installed python3-pyrsistent:amd64 python3-pyrsistent 0.20.0-1+b1 install ok installed python3-pysam python3-pysam 0.22.0+ds-1+b1 install ok installed python3-referencing python3-referencing 0.31.0-1 install ok installed python3-requests python3-requests 2.31.0+dfsg-1 install ok installed python3-retrying python3-retrying 1.3.3-4 install ok installed python3-rpds-py python3-rpds-py 0.12.0-3 install ok installed python3-scipy python3-scipy 1.11.4-6 install ok installed python3-setuptools python3-setuptools 68.1.2-2 install ok installed python3-setuptools-scm python3-setuptools-scm 8.0.4-2 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-tenacity python3-tenacity 8.2.3-2 install ok installed python3-tqdm python3-tqdm 4.64.1-2 install ok installed python3-traitlets python3-traitlets 5.5.0-2 install ok installed python3-trove-classifiers python3-trove-classifiers 2024.1.31-1 install ok installed python3-typing-extensions python3-typing-extensions 4.9.0-1 install ok installed python3-tz python3-tz 2024.1-2 install ok installed python3-urllib3 python3-urllib3 1.26.18-2 install ok installed python3-zipp python3-zipp 1.0.0-6 install ok installed python3.11 python3.11 3.11.8-1 install ok installed python3.11-minimal python3.11-minimal 3.11.8-1 install ok installed python3.12 python3.12 3.12.2-1 install ok installed python3.12-minimal python3.12-minimal 3.12.2-1 install ok installed python3.9 python3.9 3.9.2-1 install ok installed python3.9-minimal python3.9-minimal 3.9.2-1 install ok installed readline-common readline-common 8.2-3 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.08-6 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-1 install ok installed usrmerge usrmerge 39 install ok installed util-linux util-linux 2.39.3-6 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3+b1 2m44.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m44.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-get', 'remove', 'ca-certificates', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblzf1:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libsz2:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-attr', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-editables', 'python3-fastjsonschema', 'python3-h5py', 'python3-h5py-serial', 'python3-hatch-vcs', 'python3-hatchling', 'python3-idna', 'python3-importlib-metadata', 'python3-ipython-genutils', 'python3-jinja2', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-jupyter-core', 'python3-lib2to3', 'python3-markupsafe', 'python3-minimal', 'python3-more-itertools', 'python3-nbformat', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pathspec', 'python3-pkg-resources', 'python3-platformdirs', 'python3-plotly', 'python3-pluggy', 'python3-pyrsistent:amd64', 'python3-pysam', 'python3-referencing', 'python3-requests', 'python3-retrying', 'python3-rpds-py', 'python3-scipy', 'python3-setuptools', 'python3-setuptools-scm', 'python3-six', 'python3-tenacity', 'python3-tqdm', 'python3-traitlets', 'python3-trove-classifiers', 'python3-typing-extensions', 'python3-tz', 'python3-urllib3', 'python3-zipp', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'python3.9', 'python3.9-minimal', 'readline-common', 'pycoqc'] 2m56.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates libaec0 libblas3 libbrotli1 libcurl3-gnutls libcurl4 libdeflate0 libexpat1 libgfortran5 libhdf5-103-1 libhdf5-hl-100 libhts3 libhtscodecs2 liblapack3 liblbfgsb0 libldap-2.4-2 libldap-2.5-0 liblzf1 libmpdec3 libncursesw6 libnghttp2-14 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libsz2 media-types netbase openssl pycoqc python3 python3-attr python3-certifi python3-chardet python3-charset-normalizer python3-dateutil python3-decorator python3-distutils python3-editables python3-fastjsonschema python3-h5py python3-h5py-serial python3-hatch-vcs python3-hatchling python3-idna python3-importlib-metadata python3-ipython-genutils python3-jinja2 python3-jsonschema python3-jsonschema-specifications python3-jupyter-core python3-lib2to3 python3-markupsafe python3-minimal python3-more-itertools python3-nbformat python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-pathspec python3-pkg-resources python3-platformdirs python3-plotly python3-pluggy python3-pyrsistent python3-pysam python3-referencing python3-requests python3-retrying python3-rpds-py python3-scipy python3-setuptools python3-setuptools-scm python3-six python3-tenacity python3-tqdm python3-traitlets python3-trove-classifiers python3-typing-extensions python3-tz python3-urllib3 python3-zipp python3.11 python3.11-minimal python3.12 python3.12-minimal python3.9 python3.9-minimal readline-common 0 upgraded, 0 newly installed, 101 to remove and 0 not upgraded. After this operation, 400 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 30395 files and directories currently installed.) Removing pycoqc (2.5.2+dfsg-3) ... Removing python3-plotly (5.15.0+dfsg1-1) ... Removing python3-requests (2.31.0+dfsg-1) ... Removing python3-certifi (2023.11.17-1) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing python3-h5py (3.10.0-1) ... Removing python3-h5py-serial (3.10.0-1) ... Removing libhdf5-hl-100:amd64 (1.10.10+repack-3+b1) ... Removing libhdf5-103-1:amd64 (1.10.10+repack-3+b1) ... Removing libsz2:amd64 (1.1.2-1) ... Removing libaec0:amd64 (1.1.2-1) ... Removing python3-scipy (1.11.4-6) ... Removing python3-pandas (2.1.4+dfsg-5) ... Removing python3-pandas-lib:amd64 (2.1.4+dfsg-5) ... Removing python3-numpy (1:1.24.2-2) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Removing liblapack3:amd64 (3.12.0-3) ... Removing libblas3:amd64 (3.12.0-3) ... Removing libcurl4:amd64 (8.6.0-3) ... Removing python3-pysam (0.22.0+ds-1+b1) ... Removing libhts3:amd64 (1.19+ds-1) ... Removing libcurl3-gnutls:amd64 (8.6.0-3) ... Removing libbrotli1:amd64 (1.1.0-2+b3) ... Removing libdeflate0:amd64 (1.19-1) ... Removing python3.9 (3.9.2-1) ... Removing python3.9-minimal (3.9.2-1) ... Removing python3.12 (3.12.2-1) ... Removing python3.12-minimal (3.12.2-1) ... Removing libgfortran5:amd64 (14-20240201-3) ... Removing libhtscodecs2:amd64 (1.6.0-1+b1) ... Removing libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-5+b3) ... Removing liblzf1:amd64 (3.6-4) ... Removing libpython3.9-stdlib:amd64 (3.9.2-1) ... Removing libmpdec3:amd64 (2.5.1-2) ... Removing libpython3.12-stdlib:amd64 (3.12.2-1) ... Removing python3-nbformat (5.9.1-1) ... Removing python3-jsonschema (4.19.2-2) ... Removing python3-jsonschema-specifications (2023.12.1-1) ... Removing python3-referencing (0.31.0-1) ... Removing python3-rpds-py (0.12.0-3) ... Removing python3-hatch-vcs (0.4.0-1) ... Removing python3-setuptools-scm (8.0.4-2) ... Removing python3-setuptools (68.1.2-2) ... Removing python3-tqdm (4.64.1-2) ... Removing libnghttp2-14:amd64 (1.59.0-1) ... Removing libpsl5:amd64 (0.21.2-1+b1) ... Removing libpython3.12-minimal:amd64 (3.12.2-1) ... Removing libpython3.9-minimal:amd64 (3.9.2-1) ... Removing libquadmath0:amd64 (14-20240201-3) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-4+b1) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-4+b1) ... Removing libssh2-1:amd64 (1.11.0-4) ... Removing openssl (3.1.5-1) ... Removing python3-attr (23.2.0-1) ... Removing python3-chardet (5.2.0+dfsg-1) ... Removing python3-charset-normalizer (3.3.2-1) ... Removing python3-dateutil (2.8.2-3) ... Removing python3-decorator (5.1.1-5) ... Removing python3-hatchling (1.21.0-1) ... Removing python3-editables (0.5-1) ... Removing python3-fastjsonschema (2.19.0-1) ... Removing python3-idna (3.6-2) ... Removing python3-importlib-metadata (4.12.0-1) ... Removing python3-ipython-genutils (0.2.0-6) ... Removing python3-jinja2 (3.1.2-1) ... Removing python3-jupyter-core (5.3.2-1) ... Removing python3-markupsafe (2.1.5-1) ... Removing python3-zipp (1.0.0-6) ... Removing python3-more-itertools (10.2.0-1) ... Removing python3-packaging (23.2-1) ... Removing python3-pathspec (0.12.1-1) ... Removing python3-pkg-resources (68.1.2-2) ... Removing python3-platformdirs (4.2.0-1) ... Removing python3-pluggy (1.4.0-1) ... Removing python3-pyrsistent:amd64 (0.20.0-1+b1) ... Removing python3-retrying (1.3.3-4) ... Removing python3-urllib3 (1.26.18-2) ... Removing python3-six (1.16.0-4) ... Removing python3-tenacity (8.2.3-2) ... Removing python3-traitlets (5.5.0-2) ... Removing python3-trove-classifiers (2024.1.31-1) ... Removing python3-typing-extensions (4.9.0-1) ... Removing python3-tz (2024.1-2) ... Removing python3-distutils (3.11.5-1) ... Removing python3-lib2to3 (3.11.5-1) ... Removing python3 (3.11.6-1) ... Removing python3.11 (3.11.8-1) ... Removing libpython3-stdlib:amd64 (3.11.6-1) ... Removing python3-minimal (3.11.6-1) ... Removing python3.11-minimal (3.11.8-1) ... Removing libexpat1:amd64 (2.6.0-1) ... Removing libpython3.11-stdlib:amd64 (3.11.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libncursesw6:amd64 (6.4+20240113-1) ... Removing libpython3.11-minimal:amd64 (3.11.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.2-3+b1) ... Removing libsqlite3-0:amd64 (3.45.1-1) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-3) ... Processing triggers for libc-bin (2.37-15) ... 2m56.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-get', 'remove', 'ca-certificates', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblzf1:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libsz2:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-attr', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-editables', 'python3-fastjsonschema', 'python3-h5py', 'python3-h5py-serial', 'python3-hatch-vcs', 'python3-hatchling', 'python3-idna', 'python3-importlib-metadata', 'python3-ipython-genutils', 'python3-jinja2', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-jupyter-core', 'python3-lib2to3', 'python3-markupsafe', 'python3-minimal', 'python3-more-itertools', 'python3-nbformat', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pathspec', 'python3-pkg-resources', 'python3-platformdirs', 'python3-plotly', 'python3-pluggy', 'python3-pyrsistent:amd64', 'python3-pysam', 'python3-referencing', 'python3-requests', 'python3-retrying', 'python3-rpds-py', 'python3-scipy', 'python3-setuptools', 'python3-setuptools-scm', 'python3-six', 'python3-tenacity', 'python3-tqdm', 'python3-traitlets', 'python3-trove-classifiers', 'python3-typing-extensions', 'python3-tz', 'python3-urllib3', 'python3-zipp', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'python3.9', 'python3.9-minimal', 'readline-common', 'pycoqc'] 2m56.2s INFO: Running scripts post_remove 2m56.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_remove_exceptions'] 2m56.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_remove_exceptions'] 2m56.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'dpkg', '--purge', 'ca-certificates', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblzf1:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libsz2:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-attr', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-editables', 'python3-fastjsonschema', 'python3-h5py', 'python3-h5py-serial', 'python3-hatch-vcs', 'python3-hatchling', 'python3-idna', 'python3-importlib-metadata', 'python3-ipython-genutils', 'python3-jinja2', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-jupyter-core', 'python3-lib2to3', 'python3-markupsafe', 'python3-minimal', 'python3-more-itertools', 'python3-nbformat', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pathspec', 'python3-pkg-resources', 'python3-platformdirs', 'python3-plotly', 'python3-pluggy', 'python3-pyrsistent:amd64', 'python3-pysam', 'python3-referencing', 'python3-requests', 'python3-retrying', 'python3-rpds-py', 'python3-scipy', 'python3-setuptools', 'python3-setuptools-scm', 'python3-six', 'python3-tenacity', 'python3-tqdm', 'python3-traitlets', 'python3-trove-classifiers', 'python3-typing-extensions', 'python3-tz', 'python3-urllib3', 'python3-zipp', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'python3.9', 'python3.9-minimal', 'readline-common'] 2m56.4s DUMP: (Reading database ... 7476 files and directories currently installed.) Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed dpkg: warning: ignoring request to remove libhdf5-103-1 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-100 which isn't installed dpkg: warning: ignoring request to remove libhts3 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblzf1 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.8-1) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed Purging configuration files for libpython3.12-minimal:amd64 (3.12.2-1) ... dpkg: warning: ignoring request to remove libpython3.12-stdlib which isn't installed Purging configuration files for libpython3.9-minimal:amd64 (3.9.2-1) ... dpkg: warning: ignoring request to remove libpython3.9-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed Purging configuration files for media-types (10.1.0) ... Purging configuration files for netbase (6.4) ... Purging configuration files for openssl (3.1.5-1) ... Purging configuration files for python3 (3.11.6-1) ... dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-distutils which isn't installed dpkg: warning: ignoring request to remove python3-editables which isn't installed dpkg: warning: ignoring request to remove python3-fastjsonschema which isn't installed dpkg: warning: ignoring request to remove python3-h5py which isn't installed dpkg: warning: ignoring request to remove python3-h5py-serial which isn't installed dpkg: warning: ignoring request to remove python3-hatch-vcs which isn't installed dpkg: warning: ignoring request to remove python3-hatchling which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-importlib-metadata which isn't installed dpkg: warning: ignoring request to remove python3-ipython-genutils which isn't installed dpkg: warning: ignoring request to remove python3-jinja2 which isn't installed Purging configuration files for python3-jsonschema (4.19.2-2) ... dpkg: warning: ignoring request to remove python3-jsonschema-specifications which isn't installed dpkg: warning: ignoring request to remove python3-jupyter-core which isn't installed dpkg: warning: ignoring request to remove python3-lib2to3 which isn't installed dpkg: warning: ignoring request to remove python3-markupsafe which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-more-itertools which isn't installed dpkg: warning: ignoring request to remove python3-nbformat which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pathspec which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-platformdirs which isn't installed dpkg: warning: ignoring request to remove python3-plotly which isn't installed dpkg: warning: ignoring request to remove python3-pluggy which isn't installed dpkg: warning: ignoring request to remove python3-pyrsistent which isn't installed dpkg: warning: ignoring request to remove python3-pysam which isn't installed dpkg: warning: ignoring request to remove python3-referencing which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-retrying which isn't installed dpkg: warning: ignoring request to remove python3-rpds-py which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-setuptools-scm which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-tenacity which isn't installed dpkg: warning: ignoring request to remove python3-tqdm which isn't installed dpkg: warning: ignoring request to remove python3-traitlets which isn't installed dpkg: warning: ignoring request to remove python3-trove-classifiers which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-zipp which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed Purging configuration files for python3.11-minimal (3.11.8-1) ... dpkg: warning: ignoring request to remove python3.12 which isn't installed Purging configuration files for python3.12-minimal (3.12.2-1) ... dpkg: warning: ignoring request to remove python3.9 which isn't installed Purging configuration files for python3.9-minimal (3.9.2-1) ... Purging configuration files for readline-common (8.2-3) ... 2m56.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'dpkg', '--purge', 'ca-certificates', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcurl3-gnutls:amd64', 'libcurl4:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libgfortran5:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblzf1:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libsz2:amd64', 'media-types', 'netbase', 'openssl', 'python3', 'python3-attr', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-dateutil', 'python3-decorator', 'python3-distutils', 'python3-editables', 'python3-fastjsonschema', 'python3-h5py', 'python3-h5py-serial', 'python3-hatch-vcs', 'python3-hatchling', 'python3-idna', 'python3-importlib-metadata', 'python3-ipython-genutils', 'python3-jinja2', 'python3-jsonschema', 'python3-jsonschema-specifications', 'python3-jupyter-core', 'python3-lib2to3', 'python3-markupsafe', 'python3-minimal', 'python3-more-itertools', 'python3-nbformat', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pathspec', 'python3-pkg-resources', 'python3-platformdirs', 'python3-plotly', 'python3-pluggy', 'python3-pyrsistent:amd64', 'python3-pysam', 'python3-referencing', 'python3-requests', 'python3-retrying', 'python3-rpds-py', 'python3-scipy', 'python3-setuptools', 'python3-setuptools-scm', 'python3-six', 'python3-tenacity', 'python3-tqdm', 'python3-traitlets', 'python3-trove-classifiers', 'python3-typing-extensions', 'python3-tz', 'python3-urllib3', 'python3-zipp', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'python3.9', 'python3.9-minimal', 'readline-common'] 2m56.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'dpkg', '--purge', 'pycoqc'] 2m56.4s DUMP: dpkg: warning: ignoring request to remove pycoqc which isn't installed 2m56.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'dpkg', '--purge', 'pycoqc'] 2m56.4s INFO: Running scripts post_purge 2m56.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_purge_exceptions'] 2m56.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_purge_exceptions'] 2m56.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'dpkg', '--purge', '--pending'] 2m56.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'dpkg', '--purge', '--pending'] 2m56.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'dpkg', '--remove', '--pending'] 2m56.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'dpkg', '--remove', '--pending'] 2m56.4s INFO: Running scripts post_test 2m56.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_test_exceptions'] 2m56.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'tmp/scripts/post_test_exceptions'] 2m56.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9be98qdm'] 2m57.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp9be98qdm'] 2m57.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'dpkg-divert', '--list'] 2m57.0s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 2m57.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'dpkg-divert', '--list'] 2m57.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-get', 'clean'] 2m57.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp9be98qdm', 'apt-get', 'clean'] 2m57.0s DEBUG: Recording chroot state 2m58.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9be98qdm/dev/shm'] 2m58.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9be98qdm/dev/shm'] 2m58.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9be98qdm/dev/console'] 2m58.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9be98qdm/dev/console'] 2m58.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9be98qdm/dev/ptmx'] 2m58.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9be98qdm/dev/ptmx'] 2m58.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9be98qdm/dev/pts'] 2m58.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9be98qdm/dev/pts'] 2m58.3s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp9be98qdm/proc'] 2m58.4s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp9be98qdm/proc'] 2m58.4s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp9be98qdm'] 2m58.5s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp9be98qdm'] 2m58.5s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp9be98qdm 2m58.5s INFO: PASS: Upgrading between Debian distributions. 2m58.5s INFO: PASS: All tests. 2m58.5s INFO: piuparts run ends. ret=0 End: 2024-02-25 06:22:22 GMT