Start: 2024-03-29 20:14:46 GMT [stable] Package: python3-kineticstools Source: kineticstools (0.6.1+git20200729.e3723e0+dfsg-1) Version: 0.6.1+git20200729.e3723e0+dfsg-1+b1 Installed-Size: 224 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3 (<< 3.10), python3 (>= 3.9~), python3-numpy, python3-pbcommand, python3-pbcore, python3-pybigwig, python3-scipy, python3:any, kineticstools-data (= 0.6.1+git20200729.e3723e0+dfsg-1) Description: detection of DNA modifications (Python 3 library) Homepage: https://github.com/PacificBiosciences/kineticsTools Description-md5: 0aa646763554c01a3ab894d63947050f Section: python Priority: optional Filename: pool/main/k/kineticstools/python3-kineticstools_0.6.1+git20200729.e3723e0+dfsg-1+b1_amd64.deb Size: 47088 MD5sum: 1d08b218eee3cec853b144133cacace6 SHA256: 5bc34518492765afead7d132deeb680df93b4bc78b663501ff0b24784f69ceb0 [sid] Package: python3-kineticstools Source: kineticstools (0.6.1+git20220223.1326a4d+dfsg-2) Version: 0.6.1+git20220223.1326a4d+dfsg-2+b1 Installed-Size: 224 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3 (<< 3.12), python3 (>= 3.11~), python3-numpy, python3-pbcommand, python3-pbcore, python3-pybigwig, python3-scipy, python3:any, kineticstools-data (= 0.6.1+git20220223.1326a4d+dfsg-2) Description: detection of DNA modifications (Python 3 library) Homepage: https://github.com/PacificBiosciences/kineticsTools Description-md5: 0aa646763554c01a3ab894d63947050f Section: python Priority: optional Filename: pool/main/k/kineticstools/python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-2+b1_amd64.deb Size: 46748 MD5sum: 4e07eecfadbb9a473ca52229fab01cc3 SHA256: b2b291ada1f45a08f1ddcf5d4f5ed480d43577887e3edf25f4f9efebf8fe1273 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d stable -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat --apt python3-kineticstools=0.6.1+git20220223.1326a4d+dfsg-2+b1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.1~202403190841~1.4-4-g85045c69 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d stable -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat --apt python3-kineticstools=0.6.1+git20220223.1326a4d+dfsg-2+b1 0m0.0s INFO: Running on: Linux piu-slave-conova-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpvcxw4rlk 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpvcxw4rlk 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk/proc'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk/proc'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpvcxw4rlk/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-get', 'update'] 0m1.6s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Reading package lists... 0m1.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-get', 'update'] 0m1.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-get', '-yf', 'dist-upgrade'] 0m2.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-get', '-yf', 'dist-upgrade'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.5s DUMP: 29fcf27583012b383113cec2bf757015 - 0m2.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.5s INFO: Running scripts post_setup 0m2.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_setup_dummy_users'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_setup_dummy_users'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_setup_forbid_home'] 0m3.5s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_setup_forbid_home'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.5s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_setup_minimize'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_setup_minimize'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_setup_zz_backports'] 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_setup_zz_backports'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.5s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u9 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u8 install ok installed libc6:amd64 libc6 2.31-13+deb11u8 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.5s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat 0m3.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk'] 0m4.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk'] 0m4.1s INFO: Running scripts is_testable 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/is_testable_uninstallable'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/is_testable_uninstallable'] 0m4.1s INFO: Running scripts pre_test 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_test_exceptions'] 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_test_exceptions'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_test_root_password'] 0m4.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_test_root_password'] 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-cache', 'show', '--no-all-versions', 'python3-kineticstools'] 0m4.4s DUMP: Package: python3-kineticstools Source: kineticstools (0.6.1+git20200729.e3723e0+dfsg-1) Version: 0.6.1+git20200729.e3723e0+dfsg-1+b1 Installed-Size: 224 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3 (<< 3.10), python3 (>= 3.9~), python3-numpy, python3-pbcommand, python3-pbcore, python3-pybigwig, python3-scipy, python3:any, kineticstools-data (= 0.6.1+git20200729.e3723e0+dfsg-1) Description-en: detection of DNA modifications (Python 3 library) Tools for detecting DNA modifications from single molecule, real-time (SMRT?) sequencing data. This tool implements the P_ModificationDetection module in SMRT? Portal, used by the RS_Modification_Detection and RS_Modifications_and_Motif_Detection protocol. Researchers interested in understanding or extending the modification detection algorithms can use these tools as a starting point. . This package is part of the SMRTAnalysis suite and contains the backend Python 3 library. Description-md5: 0aa646763554c01a3ab894d63947050f Homepage: https://github.com/PacificBiosciences/kineticsTools Section: python Priority: optional Filename: pool/main/k/kineticstools/python3-kineticstools_0.6.1+git20200729.e3723e0+dfsg-1+b1_amd64.deb Size: 47088 MD5sum: 1d08b218eee3cec853b144133cacace6 SHA256: 5bc34518492765afead7d132deeb680df93b4bc78b663501ff0b24784f69ceb0 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-cache', 'show', '--no-all-versions', 'python3-kineticstools'] 0m4.4s INFO: apt-cache knows about the following packages: python3-kineticstools 0m4.4s INFO: Running scripts pre_install 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_database-server'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_database-server'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_exceptions'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_exceptions'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_extras'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_extras'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-cache', 'policy'] 0m4.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.9,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-cache', 'policy'] 0m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-cache', 'policy', 'python3-kineticstools'] 0m4.5s DUMP: python3-kineticstools: Installed: (none) Candidate: 0.6.1+git20200729.e3723e0+dfsg-1+b1 Version table: 0.6.1+git20200729.e3723e0+dfsg-1+b1 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-cache', 'policy', 'python3-kineticstools'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-get', '-y', 'install', 'python3-kineticstools'] 0m32.8s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: ca-certificates kineticstools-data libbigwig0 libblas3 libbrotli1 libbsd0 libcurl3-gnutls libdeflate0 libexpat1 libfreetype6 libgdbm-compat4 libgdbm6 libgfortran5 libhts3 libimagequant0 libjbig0 libjpeg62-turbo liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 libmd0 libmpdec3 libncursesw6 libnghttp2-14 libperl5.32 libpng16-16 libpsl5 libpython3-stdlib libpython3.9 libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libtiff5 libwebp6 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 mailcap media-types mime-support openssl perl perl-modules-5.32 python3 python3-avro python3-biopython python3-certifi python3-chardet python3-decorator python3-idna python3-iso8601 python3-minimal python3-numpy python3-pbcommand python3-pbcore python3-pil python3-pkg-resources python3-pybigwig python3-pysam python3-reportlab python3-reportlab-accel python3-requests python3-scipy python3-six python3-tz python3-urllib3 python3.9 python3.9-minimal readline-common Suggested packages: gdbm-l10n liblcms2-utils sensible-utils perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib python3-renderpm python3-psycopg2 raxml samtools t-coffee wise w3-dtd-mathml gcc gfortran python-numpy-doc python3-dev python3-numpy-dbg python3-pytest python-pbcore-doc python-pil-doc python3-pil-dbg python3-setuptools pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python3.9-venv python3.9-doc binutils binfmt-support readline-doc Recommended packages: curl libldap-common libgpm2 publicsuffix libsasl2-modules bzip2 file xz-utils netbase python-biopython-doc ncbi-blast+ python3-h5py python3-olefile python3-renderpm g++ | c++-compiler The following NEW packages will be installed: ca-certificates kineticstools-data libbigwig0 libblas3 libbrotli1 libbsd0 libcurl3-gnutls libdeflate0 libexpat1 libfreetype6 libgdbm-compat4 libgdbm6 libgfortran5 libhts3 libimagequant0 libjbig0 libjpeg62-turbo liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 libmd0 libmpdec3 libncursesw6 libnghttp2-14 libperl5.32 libpng16-16 libpsl5 libpython3-stdlib libpython3.9 libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libtiff5 libwebp6 libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 mailcap media-types mime-support openssl perl perl-modules-5.32 python3 python3-avro python3-biopython python3-certifi python3-chardet python3-decorator python3-idna python3-iso8601 python3-kineticstools python3-minimal python3-numpy python3-pbcommand python3-pbcore python3-pil python3-pkg-resources python3-pybigwig python3-pysam python3-reportlab python3-reportlab-accel python3-requests python3-scipy python3-six python3-tz python3-urllib3 python3.9 python3.9-minimal readline-common 0 upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 68.2 MB of archives. After this operation, 215 MB of additional disk space will be used. 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bullseye/main amd64 mailcap all 3.69 [31.7 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 mime-support all 3.66 [10.9 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.2+20201114-2+deb11u2 [132 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1w-0+deb11u1 [859 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 kineticstools-data all 0.6.1+git20200729.e3723e0+dfsg-1 [21.7 MB] Get:25 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1+deb11u1 [69.1 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1+deb11u1 [106 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3+deb11u1 [232 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1+deb11u1 [77.2 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:32 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get:33 http://deb.debian.org/debian bullseye/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+deb11u11 [344 kB] Get:34 http://deb.debian.org/debian bullseye/main amd64 libbigwig0 amd64 0.4.4+dfsg-2 [27.1 kB] Get:35 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3+deb11u1 [153 kB] Get:36 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get:37 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1+deb11u1 [108 kB] Get:38 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get:39 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:40 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1+deb11u1 [418 kB] Get:41 http://deb.debian.org/debian bullseye/main amd64 libquadmath0 amd64 10.2.1-6 [145 kB] Get:42 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libtiff5 amd64 4.2.0-1+deb11u5 [290 kB] Get:53 http://deb.debian.org/debian bullseye/main amd64 libwebpdemux2 amd64 0.6.1-2.1+deb11u2 [87.8 kB] Get:54 http://deb.debian.org/debian bullseye/main amd64 libwebpmux3 amd64 0.6.1-2.1+deb11u2 [97.7 kB] Get:55 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:56 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:57 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:58 http://deb.debian.org/debian bullseye/main amd64 python3-avro all 1.10.1+dfsg-1 [31.5 kB] Get:59 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get:60 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get:61 http://deb.debian.org/debian bullseye/main amd64 python3-reportlab-accel amd64 3.5.59-2 [39.1 kB] Get:62 http://deb.debian.org/debian bullseye/main amd64 python3-pil amd64 8.1.2+dfsg-0.3+deb11u1 [445 kB] Get:63 http://deb.debian.org/debian bullseye/main amd64 python3-reportlab all 3.5.59-2 [575 kB] Get:64 http://deb.debian.org/debian bullseye/main amd64 python3-biopython amd64 1.78+dfsg-4 [1402 kB] Get:65 http://deb.debian.org/debian bullseye/main amd64 python3-certifi all 2020.6.20-1 [151 kB] Get:66 http://deb.debian.org/debian bullseye/main amd64 python3-chardet all 4.0.0-1 [99.0 kB] Get:67 http://deb.debian.org/debian bullseye/main amd64 python3-decorator all 4.4.2-2 [15.8 kB] Get:68 http://deb.debian.org/debian bullseye/main amd64 python3-idna all 2.10-1 [37.4 kB] Get:69 http://deb.debian.org/debian bullseye/main amd64 python3-iso8601 all 0.1.13-1 [14.0 kB] Get:70 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get:71 http://deb.debian.org/debian bullseye/main amd64 python3-urllib3 all 1.26.5-1~exp1 [114 kB] Get:72 http://deb.debian.org/debian bullseye/main amd64 python3-requests all 2.25.1+dfsg-2 [69.3 kB] Get:73 http://deb.debian.org/debian bullseye/main amd64 python3-tz all 2021.1-1 [34.8 kB] Get:74 http://deb.debian.org/debian bullseye/main amd64 python3-pbcommand all 2.1.1+git20201023.cc0ed3d-1 [90.9 kB] Get:75 http://deb.debian.org/debian bullseye/main amd64 python3-pysam amd64 0.15.4+ds-3+b2 [1536 kB] Get:76 http://deb.debian.org/debian bullseye/main amd64 python3-pbcore all 1.7.1+git20200430.a127b1e+dfsg-1 [2881 kB] Get:77 http://deb.debian.org/debian bullseye/main amd64 python3-pybigwig amd64 0.3.17-1+b4 [35.8 kB] Get:78 http://deb.debian.org/debian bullseye/main amd64 python3-scipy amd64 1.6.0-2 [12.3 MB] Get:79 http://deb.debian.org/debian bullseye/main amd64 python3-kineticstools amd64 0.6.1+git20200729.e3723e0+dfsg-1+b1 [47.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 68.2 MB in 2s (42.7 MB/s) Selecting previously unselected package perl-modules-5.32. 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9401 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_amd64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package openssl. Preparing to unpack .../01-openssl_1.1.1w-0+deb11u1_amd64.deb ... Unpacking openssl (1.1.1w-0+deb11u1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../02-ca-certificates_20210119_all.deb ... Unpacking ca-certificates (20210119) ... 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Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../08-libnghttp2-14_1.43.0-1+deb11u1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../09-libpsl5_0.21.0-1.2_amd64.deb ... Unpacking libpsl5:amd64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../10-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../11-libssh2-1_1.9.0-2_amd64.deb ... Unpacking libssh2-1:amd64 (1.9.0-2) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../12-libcurl3-gnutls_7.74.0-1.3+deb11u11_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u11) ... Selecting previously unselected package libbigwig0:amd64. Preparing to unpack .../13-libbigwig0_0.4.4+dfsg-2_amd64.deb ... Unpacking libbigwig0:amd64 (0.4.4+dfsg-2) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../14-libblas3_3.9.0-3+deb11u1_amd64.deb ... Unpacking libblas3:amd64 (3.9.0-3+deb11u1) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../15-libmd0_1.0.3-3_amd64.deb ... Unpacking libmd0:amd64 (1.0.3-3) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../16-libbsd0_0.11.3-1+deb11u1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.3-1+deb11u1) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../17-libdeflate0_1.7-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.7-1) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../18-libpng16-16_1.6.37-3_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.37-3) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../19-libfreetype6_2.10.4+dfsg-1+deb11u1_amd64.deb ... Unpacking libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../20-libquadmath0_10.2.1-6_amd64.deb ... Unpacking libquadmath0:amd64 (10.2.1-6) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../21-libgfortran5_10.2.1-6_amd64.deb ... Unpacking libgfortran5:amd64 (10.2.1-6) ... Selecting previously unselected package libhts3:amd64. Preparing to unpack .../22-libhts3_1.11-4_amd64.deb ... Unpacking libhts3:amd64 (1.11-4) ... Selecting previously unselected package libimagequant0:amd64. Preparing to unpack .../23-libimagequant0_2.12.2-1.1_amd64.deb ... Unpacking libimagequant0:amd64 (2.12.2-1.1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../24-libjbig0_2.1-3.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1+b2) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../25-libjpeg62-turbo_1%3a2.0.6-4_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.0.6-4) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../26-liblapack3_3.9.0-3+deb11u1_amd64.deb ... Unpacking liblapack3:amd64 (3.9.0-3+deb11u1) ... Selecting previously unselected package liblbfgsb0:amd64. Preparing to unpack .../27-liblbfgsb0_3.0+dfsg.3-9_amd64.deb ... Unpacking liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../28-liblcms2-2_2.12~rc1-2_amd64.deb ... Unpacking liblcms2-2:amd64 (2.12~rc1-2) ... Selecting previously unselected package libpython3.9:amd64. Preparing to unpack .../29-libpython3.9_3.9.2-1_amd64.deb ... Unpacking libpython3.9:amd64 (3.9.2-1) ... Selecting previously unselected package libwebp6:amd64. Preparing to unpack .../30-libwebp6_0.6.1-2.1+deb11u2_amd64.deb ... Unpacking libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../31-libtiff5_4.2.0-1+deb11u5_amd64.deb ... Unpacking libtiff5:amd64 (4.2.0-1+deb11u5) ... Selecting previously unselected package libwebpdemux2:amd64. Preparing to unpack .../32-libwebpdemux2_0.6.1-2.1+deb11u2_amd64.deb ... Unpacking libwebpdemux2:amd64 (0.6.1-2.1+deb11u2) ... Selecting previously unselected package libwebpmux3:amd64. Preparing to unpack .../33-libwebpmux3_0.6.1-2.1+deb11u2_amd64.deb ... Unpacking libwebpmux3:amd64 (0.6.1-2.1+deb11u2) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../34-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../35-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../36-libxcb1_1.14-3_amd64.deb ... Unpacking libxcb1:amd64 (1.14-3) ... Selecting previously unselected package python3-avro. Preparing to unpack .../37-python3-avro_1.10.1+dfsg-1_all.deb ... Unpacking python3-avro (1.10.1+dfsg-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../38-python3-pkg-resources_52.0.0-4_all.deb ... Unpacking python3-pkg-resources (52.0.0-4) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../39-python3-numpy_1%3a1.19.5-1_amd64.deb ... Unpacking python3-numpy (1:1.19.5-1) ... Selecting previously unselected package python3-reportlab-accel:amd64. Preparing to unpack .../40-python3-reportlab-accel_3.5.59-2_amd64.deb ... Unpacking python3-reportlab-accel:amd64 (3.5.59-2) ... Selecting previously unselected package python3-pil:amd64. Preparing to unpack .../41-python3-pil_8.1.2+dfsg-0.3+deb11u1_amd64.deb ... Unpacking python3-pil:amd64 (8.1.2+dfsg-0.3+deb11u1) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../42-python3-reportlab_3.5.59-2_all.deb ... Unpacking python3-reportlab (3.5.59-2) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../43-python3-biopython_1.78+dfsg-4_amd64.deb ... Unpacking python3-biopython (1.78+dfsg-4) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../44-python3-certifi_2020.6.20-1_all.deb ... Unpacking python3-certifi (2020.6.20-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../45-python3-chardet_4.0.0-1_all.deb ... Unpacking python3-chardet (4.0.0-1) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../46-python3-decorator_4.4.2-2_all.deb ... Unpacking python3-decorator (4.4.2-2) ... Selecting previously unselected package python3-idna. Preparing to unpack .../47-python3-idna_2.10-1_all.deb ... Unpacking python3-idna (2.10-1) ... Selecting previously unselected package python3-iso8601. Preparing to unpack .../48-python3-iso8601_0.1.13-1_all.deb ... Unpacking python3-iso8601 (0.1.13-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../49-python3-six_1.16.0-2_all.deb ... Unpacking python3-six (1.16.0-2) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../50-python3-urllib3_1.26.5-1~exp1_all.deb ... Unpacking python3-urllib3 (1.26.5-1~exp1) ... Selecting previously unselected package python3-requests. Preparing to unpack .../51-python3-requests_2.25.1+dfsg-2_all.deb ... Unpacking python3-requests (2.25.1+dfsg-2) ... Selecting previously unselected package python3-tz. Preparing to unpack .../52-python3-tz_2021.1-1_all.deb ... Unpacking python3-tz (2021.1-1) ... Selecting previously unselected package python3-pbcommand. Preparing to unpack .../53-python3-pbcommand_2.1.1+git20201023.cc0ed3d-1_all.deb ... Unpacking python3-pbcommand (2.1.1+git20201023.cc0ed3d-1) ... Selecting previously unselected package python3-pysam. Preparing to unpack .../54-python3-pysam_0.15.4+ds-3+b2_amd64.deb ... Unpacking python3-pysam (0.15.4+ds-3+b2) ... Selecting previously unselected package python3-pbcore. Preparing to unpack .../55-python3-pbcore_1.7.1+git20200430.a127b1e+dfsg-1_all.deb ... Unpacking python3-pbcore (1.7.1+git20200430.a127b1e+dfsg-1) ... Selecting previously unselected package python3-pybigwig. Preparing to unpack .../56-python3-pybigwig_0.3.17-1+b4_amd64.deb ... Unpacking python3-pybigwig (0.3.17-1+b4) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../57-python3-scipy_1.6.0-2_amd64.deb ... Unpacking python3-scipy (1.6.0-2) ... Selecting previously unselected package python3-kineticstools. Preparing to unpack .../58-python3-kineticstools_0.6.1+git20200729.e3723e0+dfsg-1+b1_amd64.deb ... Unpacking python3-kineticstools (0.6.1+git20200729.e3723e0+dfsg-1+b1) ... Setting up media-types (4.0.0) ... Setting up liblcms2-2:amd64 (2.12~rc1-2) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up perl-modules-5.32 (5.32.1-4+deb11u3) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libsqlite3-0:amd64 (3.34.1-3) ... Setting up libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Setting up libdeflate0:amd64 (1.7-1) ... Setting up kineticstools-data (0.6.1+git20200729.e3723e0+dfsg-1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libblas3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libquadmath0:amd64 (10.2.1-6) ... Setting up libimagequant0:amd64 (2.12.2-1.1) ... Setting up libpng16-16:amd64 (1.6.37-3) ... Setting up libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Setting up libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libssh2-1:amd64 (1.9.0-2) ... Setting up libtiff5:amd64 (4.2.0-1+deb11u5) ... Setting up openssl (1.1.1w-0+deb11u1) ... Setting up libwebpmux3:amd64 (0.6.1-2.1+deb11u2) ... Setting up libbsd0:amd64 (0.11.3-1+deb11u1) ... Setting up readline-common (8.1-1) ... Setting up libgdbm6:amd64 (1.19-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3) ... Setting up libwebpdemux2:amd64 (0.6.1-2.1+deb11u2) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Setting up libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u11) ... Setting up libbigwig0:amd64 (0.4.4+dfsg-2) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Setting up libgdbm-compat4:amd64 (1.19-2) ... Setting up libperl5.32:amd64 (5.32.1-4+deb11u3) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Setting up libhts3:amd64 (1.11-4) ... Setting up perl (5.32.1-4+deb11u3) ... Setting up libpython3.9:amd64 (3.9.2-1) ... Setting up mailcap (3.69) ... Setting up python3.9 (3.9.2-1) ... Setting up mime-support (3.66) ... Setting up python3 (3.9.2-3) ... Setting up python3-tz (2021.1-1) ... Setting up python3-six (1.16.0-2) ... Setting up python3-pil:amd64 (8.1.2+dfsg-0.3+deb11u1) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-iso8601 (0.1.13-1) ... Setting up python3-certifi (2020.6.20-1) ... Setting up python3-avro (1.10.1+dfsg-1) ... Setting up python3-reportlab-accel:amd64 (3.5.59-2) ... Setting up python3-idna (2.10-1) ... Setting up python3-urllib3 (1.26.5-1~exp1) ... Setting up python3-reportlab (3.5.59-2) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-pysam (0.15.4+ds-3+b2) ... Setting up python3-chardet (4.0.0-1) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-pybigwig (0.3.17-1+b4) ... Setting up python3-biopython (1.78+dfsg-4) ... Setting up python3-scipy (1.6.0-2) ... Setting up python3-pbcore (1.7.1+git20200430.a127b1e+dfsg-1) ... Setting up python3-pbcommand (2.1.1+git20201023.cc0ed3d-1) ... Setting up python3-kineticstools (0.6.1+git20200729.e3723e0+dfsg-1+b1) ... Processing triggers for libc-bin (2.31-13+deb11u8) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 0m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-get', '-y', 'install', 'python3-kineticstools'] 0m32.8s INFO: Running scripts post_install 0m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_install_exceptions'] 0m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_install_exceptions'] 0m32.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk'] 0m33.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk'] 0m33.8s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpvcxw4rlk to sid 0m33.8s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m33.8s INFO: Running scripts pre_distupgrade 0m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_distupgrade_exceptions'] 0m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_distupgrade_exceptions'] 0m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m33.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m33.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-get', 'update'] 0m38.3s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9928 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7205 kB] Fetched 17.3 MB in 3s (5158 kB/s) Reading package lists... 0m38.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-get', 'update'] 0m38.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-get', '-yf', 'dist-upgrade'] 2m19.9s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libldap-2.4-2 libmpdec3 libperl5.32 libpython3.9 libpython3.9-minimal libpython3.9-stdlib libquadmath0 libtiff5 libwebp6 perl-modules-5.32 python3.9 python3.9-minimal Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0 libbigwig0 libcurl3-gnutls libdb5.3 libext2fs2 libgdbm-compat4 libgdbm6 libgnutls30 libhogweed6 libhts3 libnettle8 libpng16-16 libpsl5 libreadline8 libsemanage1 libssh2-1 libtirpc3 python3-reportlab-accel The following NEW packages will be installed: fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 gcc-14-base libapt-pkg6.0t64 libbigwig0t64 libcairo2 libcap2 libcurl3t64-gnutls libdb5.3t64 libext2fs2t64 libffi8 libfile-find-rule-perl libfontconfig1 libfontenc1 libfribidi0 libgdbm-compat4t64 libgdbm6t64 libglib2.0-0t64 libgnutls30t64 libgomp1 libgraphite2-3 libharfbuzz0b libhogweed6t64 libhts3t64 libhtscodecs2 libldap-2.5-0 liblerc4 libnettle8t64 libnumber-compare-perl libopenjp2-7 libperl5.38t64 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3.11-minimal libpython3.11-stdlib libpython3.11t64 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libraqm0 libreadline8t64 libsemanage2 libsepol2 libsharpyuv0 libssh2-1t64 libssl3t64 libtext-glob-perl libtiff6 libtirpc3t64 libunistring5 libwebp7 libx11-6 libx11-data libxcb-render0 libxcb-shm0 libxext6 libxrender1 netbase perl-modules-5.38 python3-cairo python3-charset-normalizer python3-freetype python3-rlpycairo python3.11 python3.11-minimal sgml-base usrmerge w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core The following packages will be upgraded: adduser apt base-files base-passwd bash bsdutils ca-certificates coreutils dash debconf debian-archive-keyring debianutils diffutils dpkg e2fsprogs findutils gcc-10-base gcc-9-base gpgv grep gzip hostname init-system-helpers kineticstools-data libacl1 libattr1 libaudit-common libaudit1 libblas3 libblkid1 libbrotli1 libbsd0 libbz2-1.0 libc-bin libc6 libcap-ng0 libcom-err2 libcrypt1 libdebconfclient0 libdeflate0 libexpat1 libfreetype6 libgcc-s1 libgcrypt20 libgfortran5 libgmp10 libgpg-error0 libgssapi-krb5-2 libidn2-0 libimagequant0 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 liblz4-1 liblzma5 libmd0 libmount1 libmpdec3 libncursesw6 libnghttp2-14 libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpcre3 libpython3-stdlib libquadmath0 librtmp1 libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtirpc-common libudev1 libuuid1 libwebpdemux2 libwebpmux3 libxcb1 libxxhash0 libzstd1 login logsave lsb-base mailcap mawk media-types mount ncurses-base ncurses-bin openssl passwd perl perl-base python3 python3-avro python3-biopython python3-certifi python3-chardet python3-decorator python3-idna python3-iso8601 python3-kineticstools python3-minimal python3-numpy python3-pbcommand python3-pbcore python3-pil python3-pkg-resources python3-pybigwig python3-pysam python3-reportlab python3-requests python3-scipy python3-six python3-tz python3-urllib3 readline-common sed sysvinit-utils tar tzdata util-linux zlib1g 140 upgraded, 75 newly installed, 18 to remove and 0 not upgraded. Need to get 145 MB of archives. After this operation, 272 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 base-files amd64 13 [70.6 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.37-15.1 [2752 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.37-15.1 [602 kB] Get:4 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14-20240315-1 [42.9 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14-20240315-1 [72.2 kB] Get:6 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.17 [89.0 kB] Get:7 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2.21-2 [1492 kB] Get:8 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.39.3-11 [97.4 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2+b1 [559 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.1.5-1.1 [2058 kB] Get:11 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.4-3.1 [2950 kB] Get:12 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.6.1+really5.4.5-1 [240 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.5+dfsg2-2 [295 kB] Get:14 http://deb.debian.org/debian sid/main amd64 tar amd64 1.35+dfsg-3 [813 kB] Get:15 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.22.6 [1510 kB] Get:16 http://deb.debian.org/debian sid/main amd64 dash amd64 0.5.12-6 [92.1 kB] Get:17 http://deb.debian.org/debian sid/main amd64 diffutils amd64 1:3.10-1 [375 kB] Get:18 http://deb.debian.org/debian sid/main amd64 findutils amd64 4.9.0-5 [636 kB] Get:19 http://deb.debian.org/debian sid/main amd64 grep amd64 3.11-4 [431 kB] Get:20 http://deb.debian.org/debian sid/main amd64 gzip amd64 1.12-1.1 [133 kB] Get:21 http://deb.debian.org/debian sid/main amd64 hostname amd64 3.23+nmu2 [10.6 kB] Get:22 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.13+dfsg1-4 [616 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.4+20240113-1 [135 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.4+20240113-1 [342 kB] Get:25 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.4+20240113-1 [431 kB] Get:26 http://deb.debian.org/debian sid/main amd64 perl-modules-5.38 all 5.38.2-3.2 [2899 kB] Get:27 http://deb.debian.org/debian sid/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-6 [697 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.23-5.1+b1 [73.0 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.23-5.1+b1 [48.8 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libperl5.38t64 amd64 5.38.2-3.2 [4266 kB] Get:31 http://deb.debian.org/debian sid/main amd64 perl amd64 5.38.2-3.2 [236 kB] Get:32 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.38.2-3.2 [1643 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:3.1.2-2.1 [11.4 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.8.4-2 [16.9 kB] Get:36 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:3.1.2-2.1 [48.5 kB] Get:37 http://deb.debian.org/debian sid/main amd64 debconf all 1.5.86 [119 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.5.3-6 [67.7 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.66-5 [27.4 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.47-3 [77.8 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.10.3-2 [708 kB] Get:42 http://deb.debian.org/debian sid/main amd64 liblz4-1 amd64 1.9.4-1+b2 [61.6 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 255.4-1+b1 [364 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.36-4 [89.8 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.42-4+b1 [262 kB] Get:46 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.5-2+b1 [75.0 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.5.3-6 [54.2 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.5.3-6 [260 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libbz2-1.0 amd64 1.0.8-5.1 [38.0 kB] Get:50 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.3.dfsg-3.1 [87.6 kB] Get:51 http://deb.debian.org/debian sid/main amd64 sed amd64 4.9-2 [329 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.39.3-11 [160 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.39.3-11 [191 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.39.3-11 [117 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.39.3-11 [30.2 kB] Get:56 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.39.3-11 [1231 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.271+b3 [10.2 kB] Get:58 http://deb.debian.org/debian sid/main amd64 base-passwd amd64 3.6.3 [50.8 kB] Get:59 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14-20240315-1 [713 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libldap-2.5-0 amd64 2.5.16+dfsg-2 [185 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.59.0-1+b1 [74.1 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.2-1 [425 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.0-4.1+b1 [215 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libcurl3t64-gnutls amd64 8.7.1-1 [432 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libhtscodecs2 amd64 1.6.0-1+b1 [93.0 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libhts3t64 amd64 1.19+ds-1.1+b1 [448 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libnettle8t64 amd64 3.9.1-2.2 [296 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libhogweed6t64 amd64 3.9.1-2.2 [328 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.3-4 [418 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.3-1.1+b1 [1426 kB] Get:74 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b3 [58.5 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.7-2 [128 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.19.0-3+b2 [48.9 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get:81 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.0-2.4 [20.2 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:84 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0t64 amd64 2.7.14 [986 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 255.4-1+b1 [126 kB] Get:87 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.2-2+b1 [26.6 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.5-1 [9908 B] Get:89 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.5-2 [277 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.5-1+b3 [90.3 kB] Get:91 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.13+dfsg1-4 [973 kB] Get:92 http://deb.debian.org/debian sid/main amd64 adduser all 3.137 [140 kB] Get:93 http://deb.debian.org/debian sid/main amd64 gpgv amd64 2.2.40-3 [649 kB] Get:94 http://deb.debian.org/debian sid/main amd64 debian-archive-keyring all 2023.4 [161 kB] Get:95 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.5.5-1 [47.0 kB] Get:96 http://deb.debian.org/debian sid/main amd64 apt amd64 2.7.14 [1370 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:98 http://deb.debian.org/debian sid/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:99 http://deb.debian.org/debian sid/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get:100 http://deb.debian.org/debian sid/main amd64 usrmerge all 39 [13.1 kB] Get:101 http://deb.debian.org/debian sid/main amd64 init-system-helpers all 1.66 [39.0 kB] Get:102 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.4+20240113-1 [268 kB] Get:103 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.08-7 [32.2 kB] Get:104 http://deb.debian.org/debian sid/main amd64 lsb-base all 11.6 [4584 B] Get:105 http://deb.debian.org/debian sid/main amd64 python3-pybigwig amd64 0.3.22+dfsg-1+b2 [44.6 kB] Get:106 http://deb.debian.org/debian sid/main amd64 libbigwig0t64 amd64 0.4.7+dfsg-3.1+b1 [28.4 kB] Get:107 http://deb.debian.org/debian sid/main amd64 logsave amd64 1.47.0-2.4 [20.1 kB] Get:108 http://deb.debian.org/debian sid/main amd64 libext2fs2t64 amd64 1.47.0-2.4 [206 kB] Get:109 http://deb.debian.org/debian sid/main amd64 e2fsprogs amd64 1.47.0-2.4 [571 kB] Get:110 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b2 [438 kB] Get:111 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get:112 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-4 [69.3 kB] Get:113 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get:114 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1.2 [10.9 kB] Get:115 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-3+b1 [40.4 kB] Get:116 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.2 [82.6 kB] Get:117 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.8-3+b2 [817 kB] Get:118 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:119 http://deb.debian.org/debian sid/main amd64 python3.11-minimal amd64 3.11.8-3+b2 [1879 kB] Get:120 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.11.4-6 [19.5 MB] Get:121 http://deb.debian.org/debian sid/main amd64 python3-reportlab all 4.1.0-4 [1113 kB] Get:122 http://deb.debian.org/debian sid/main amd64 python3-pysam amd64 0.22.0+ds-1+b2 [4646 kB] Get:123 http://deb.debian.org/debian sid/main amd64 python3-pil amd64 10.2.0-1 [525 kB] Get:124 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.26.4+ds-6 [5472 kB] Get:125 http://deb.debian.org/debian sid/main amd64 python3-kineticstools amd64 0.6.1+git20220223.1326a4d+dfsg-2+b1 [46.7 kB] Get:126 http://deb.debian.org/debian sid/main amd64 python3-biopython amd64 1.83+dfsg1-1 [1634 kB] Get:127 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get:128 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get:129 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get:130 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get:131 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14-20240315-1 [836 kB] Get:132 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get:133 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get:134 http://deb.debian.org/debian sid/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b1 [29.1 kB] Get:135 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:136 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:137 http://deb.debian.org/debian sid/main amd64 tzdata all 2024a-1 [255 kB] Get:138 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.45.2-1 [895 kB] Get:139 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.8-3+b2 [1792 kB] Get:140 http://deb.debian.org/debian sid/main amd64 libpython3.11t64 amd64 3.11.8-3+b2 [1958 kB] Get:141 http://deb.debian.org/debian sid/main amd64 libpython3.12-minimal amd64 3.12.2-4+b2 [807 kB] Get:142 http://deb.debian.org/debian sid/main amd64 libpython3.12-stdlib amd64 3.12.2-4+b2 [1886 kB] Get:143 http://deb.debian.org/debian sid/main amd64 libpython3.12t64 amd64 3.12.2-4+b2 [2104 kB] Get:144 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14-20240315-1 [136 kB] Get:145 http://deb.debian.org/debian sid/main amd64 libimagequant0 amd64 2.18.0-1 [35.0 kB] Get:146 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-2+b2 [167 kB] Get:147 http://deb.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get:148 http://deb.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get:149 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get:150 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.78.4-6 [1222 kB] Get:151 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get:152 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get:153 http://deb.debian.org/debian sid/main amd64 libraqm0 amd64 0.10.1-1+b1 [14.2 kB] Get:154 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get:155 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get:156 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.3.2-0.4+b1 [108 kB] Get:157 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.3.2-0.4+b1 [308 kB] Get:158 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get:159 http://deb.debian.org/debian sid/main amd64 libwebpdemux2 amd64 1.3.2-0.4+b1 [107 kB] Get:160 http://deb.debian.org/debian sid/main amd64 libwebpmux3 amd64 1.3.2-0.4+b1 [120 kB] Get:161 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:162 http://deb.debian.org/debian sid/main amd64 python3-iso8601 all 1.0.2-1 [15.7 kB] Get:163 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.1.5-1.1 [1241 kB] Get:164 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:165 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2023.11.17-1 [155 kB] Get:166 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get:167 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.6-2 [37.0 kB] Get:168 http://deb.debian.org/debian sid/main amd64 python3-six all 1.16.0-6 [16.3 kB] Get:169 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 1.26.18-2 [116 kB] Get:170 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get:171 http://deb.debian.org/debian sid/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get:172 http://deb.debian.org/debian sid/main amd64 python3-avro all 1.11.1+dfsg-2 [70.5 kB] Get:173 http://deb.debian.org/debian sid/main amd64 python3-pbcommand all 2.1.1+git20220616.3f2e6c2-3 [90.5 kB] Get:174 http://deb.debian.org/debian sid/main amd64 sgml-base all 1.31 [15.4 kB] Get:175 http://deb.debian.org/debian sid/main amd64 xml-core all 0.19 [20.1 kB] Get:176 http://deb.debian.org/debian sid/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get:177 http://deb.debian.org/debian sid/main amd64 python3-pbcore all 2.1.2+dfsg-7 [2831 kB] Get:178 http://deb.debian.org/debian sid/main amd64 kineticstools-data all 0.6.1+git20220223.1326a4d+dfsg-2 [21.7 MB] Get:179 http://deb.debian.org/debian sid/main amd64 python3.11 amd64 3.11.8-3+b2 [597 kB] Get:180 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get:181 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:182 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:183 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:184 http://deb.debian.org/debian sid/main amd64 libfontenc1 amd64 1:1.1.8-1 [23.0 kB] Get:185 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+23 [252 kB] Get:186 http://deb.debian.org/debian sid/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:187 http://deb.debian.org/debian sid/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get:188 http://deb.debian.org/debian sid/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get:189 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get:190 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get:191 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get:192 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:193 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.7-1 [802 kB] Get:194 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get:195 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get:196 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:197 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:198 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.0-3 [530 kB] Get:199 http://deb.debian.org/debian sid/main amd64 python3-cairo amd64 1.25.1-2 [140 kB] Get:200 http://deb.debian.org/debian sid/main amd64 python3-freetype all 2.4.0-1 [80.3 kB] Get:201 http://deb.debian.org/debian sid/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get:202 http://deb.debian.org/debian sid/main amd64 mount amd64 2.39.3-11 [143 kB] Get:203 http://deb.debian.org/debian sid/main amd64 libpam-runtime all 1.5.3-6 [140 kB] Get:204 http://deb.debian.org/debian sid/main amd64 libacl1 amd64 2.3.2-1 [32.4 kB] Get:205 http://deb.debian.org/debian sid/main amd64 libattr1 amd64 1:2.5.2-1 [22.5 kB] Get:206 http://deb.debian.org/debian sid/main amd64 libmd0 amd64 1.1.0-2 [35.8 kB] Get:207 http://deb.debian.org/debian sid/main amd64 libpcre3 amd64 2:8.39-15+b1 [342 kB] Get:208 http://deb.debian.org/debian sid/main amd64 mawk amd64 1.3.4.20240123-1 [136 kB] Get:209 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 14-20240315-1 [147 kB] Get:210 http://deb.debian.org/debian sid/main amd64 gcc-10-base amd64 10.5.0-4 [36.7 kB] Get:211 http://deb.debian.org/debian sid/main amd64 gcc-9-base amd64 9.5.0-6 [29.0 kB] Get:212 http://deb.debian.org/debian sid/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get:213 http://deb.debian.org/debian sid/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:214 http://deb.debian.org/debian sid/main amd64 libss2 amd64 1.47.0-2.4 [25.0 kB] Get:215 http://deb.debian.org/debian sid/main amd64 mailcap all 3.70+nmu1 [32.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 145 MB in 2s (67.2 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13261 files and directories currently installed.) Preparing to unpack .../coreutils_9.4-3.1_amd64.deb ... Unpacking coreutils (9.4-3.1) over (8.32-4+b1) ... Setting up coreutils (9.4-3.1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13265 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.5+dfsg2-2_amd64.deb ... Unpacking libzstd1:amd64 (1.5.5+dfsg2-2) over (1.4.8+dfsg-2.1) ... Setting up libzstd1:amd64 (1.5.5+dfsg2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13265 files and directories currently installed.) Preparing to unpack .../tar_1.35+dfsg-3_amd64.deb ... Unpacking tar (1.35+dfsg-3) over (1.34+dfsg-1+deb11u1) ... Setting up tar (1.35+dfsg-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13266 files and directories currently installed.) Preparing to unpack .../archives/dpkg_1.22.6_amd64.deb ... Unpacking dpkg (1.22.6) over (1.20.13) ... Setting up dpkg (1.22.6) ... Installing new version of config file /etc/cron.daily/dpkg ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13260 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-6_amd64.deb ... Unpacking dash (0.5.12-6) over (0.5.11+git20200708+dd9ef66-5) ... Setting up dash (0.5.12-6) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13259 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.10-1_amd64.deb ... Unpacking diffutils (1:3.10-1) over (1:3.7-5) ... Setting up diffutils (1:3.10-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13261 files and directories currently installed.) Preparing to unpack .../findutils_4.9.0-5_amd64.deb ... Unpacking findutils (4.9.0-5) over (4.8.0-1) ... Setting up findutils (4.9.0-5) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13263 files and directories currently installed.) Preparing to unpack .../gzip_1.12-1.1_amd64.deb ... Unpacking gzip (1.12-1.1) over (1.10-4+deb11u1) ... dpkg: warning: old file '/bin/uncompress' is the same as several new files! (both '/usr/bin/gunzip' and '/usr/bin/uncompress') dpkg: warning: old file '/bin/gunzip' is the same as several new files! (both '/usr/bin/gunzip' and '/usr/bin/uncompress') Setting up gzip (1.12-1.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13263 files and directories currently installed.) Preparing to unpack .../hostname_3.23+nmu2_amd64.deb ... Unpacking hostname (3.23+nmu2) over (3.23) ... Setting up hostname (3.23+nmu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13263 files and directories currently installed.) Preparing to unpack .../login_1%3a4.13+dfsg1-4_amd64.deb ... Unpacking login (1:4.13+dfsg1-4) over (1:4.8.1-1) ... Setting up login (1:4.13+dfsg1-4) ... Installing new version of config file /etc/login.defs ... Installing new version of config file /etc/pam.d/login ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13276 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.4+20240113-1_amd64.deb ... Unpacking libncursesw6:amd64 (6.4+20240113-1) over (6.2+20201114-2+deb11u2) ... Preparing to unpack .../libtinfo6_6.4+20240113-1_amd64.deb ... Unpacking libtinfo6:amd64 (6.4+20240113-1) over (6.2+20201114-2+deb11u2) ... Setting up libtinfo6:amd64 (6.4+20240113-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13274 files and directories currently installed.) Preparing to unpack .../perl_5.38.2-3.2_amd64.deb ... Unpacking perl (5.38.2-3.2) over (5.32.1-4+deb11u3) ... Selecting previously unselected package perl-modules-5.38. Preparing to unpack .../perl-modules-5.38_5.38.2-3.2_all.deb ... Unpacking perl-modules-5.38 (5.38.2-3.2) ... dpkg: libdb5.3:amd64: dependency problems, but removing anyway as you requested: libsasl2-modules-db:amd64 depends on libdb5.3. libpython3.9-stdlib:amd64 depends on libdb5.3. libperl5.32:amd64 depends on libdb5.3. libpam-modules:amd64 depends on libdb5.3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14687 files and directories currently installed.) Removing libdb5.3:amd64 (5.3.28+dfsg1-0.8) ... Selecting previously unselected package libdb5.3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14681 files and directories currently installed.) Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-6_amd64.deb ... Unpacking libdb5.3t64:amd64 (5.3.28+dfsg2-6) ... dpkg: libgdbm6:amd64: dependency problems, but removing anyway as you requested: libperl5.32:amd64 depends on libgdbm6 (>= 1.18-3). libgdbm-compat4:amd64 depends on libgdbm6 (>= 1.16). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14687 files and directories currently installed.) Removing libgdbm6:amd64 (1.19-2) ... Selecting previously unselected package libgdbm6t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14681 files and directories currently installed.) Preparing to unpack .../libgdbm6t64_1.23-5.1+b1_amd64.deb ... Unpacking libgdbm6t64:amd64 (1.23-5.1+b1) ... dpkg: libgdbm-compat4:amd64: dependency problems, but removing anyway as you requested: libperl5.32:amd64 depends on libgdbm-compat4 (>= 1.18-3). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14689 files and directories currently installed.) Removing libgdbm-compat4:amd64 (1.19-2) ... Selecting previously unselected package libgdbm-compat4t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14683 files and directories currently installed.) Preparing to unpack .../libgdbm-compat4t64_1.23-5.1+b1_amd64.deb ... Unpacking libgdbm-compat4t64:amd64 (1.23-5.1+b1) ... Selecting previously unselected package libperl5.38t64:amd64. Preparing to unpack .../libperl5.38t64_5.38.2-3.2_amd64.deb ... Unpacking libperl5.38t64:amd64 (5.38.2-3.2) ... Preparing to unpack .../perl-base_5.38.2-3.2_amd64.deb ... Unpacking perl-base (5.38.2-3.2) over (5.32.1-4+deb11u3) ... Setting up perl-base (5.38.2-3.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15217 files and directories currently installed.) Preparing to unpack .../libsasl2-modules-db_2.1.28+dfsg1-6_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) over (2.1.27+dfsg-2.1+deb11u1) ... Preparing to unpack .../libaudit-common_1%3a3.1.2-2.1_all.deb ... Unpacking libaudit-common (1:3.1.2-2.1) over (1:3.0-2) ... Setting up libaudit-common (1:3.1.2-2.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15215 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.4-2_amd64.deb ... Unpacking libcap-ng0:amd64 (0.8.4-2) over (0.7.9-2.2+b1) ... Setting up libcap-ng0:amd64 (0.8.4-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15216 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.1.2-2.1_amd64.deb ... Unpacking libaudit1:amd64 (1:3.1.2-2.1) over (1:3.0-2) ... Setting up libaudit1:amd64 (1:3.1.2-2.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15216 files and directories currently installed.) Preparing to unpack .../debconf_1.5.86_all.deb ... Unpacking debconf (1.5.86) over (1.5.77) ... Setting up debconf (1.5.86) ... Installing new version of config file /etc/debconf.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15214 files and directories currently installed.) Preparing to unpack .../libpam0g_1.5.3-6_amd64.deb ... Unpacking libpam0g:amd64 (1.5.3-6) over (1.4.0-9+deb11u1) ... Setting up libpam0g:amd64 (1.5.3-6) ... Selecting previously unselected package libcap2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15213 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.66-5_amd64.deb ... Unpacking libcap2:amd64 (1:2.66-5) ... Setting up libcap2:amd64 (1:2.66-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15221 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.47-3_amd64.deb ... Unpacking libgpg-error0:amd64 (1.47-3) over (1.38-2) ... Setting up libgpg-error0:amd64 (1.47-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15221 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.10.3-2_amd64.deb ... Unpacking libgcrypt20:amd64 (1.10.3-2) over (1.8.7-6) ... Setting up libgcrypt20:amd64 (1.10.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15223 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.9.4-1+b2_amd64.deb ... Unpacking liblz4-1:amd64 (1.9.4-1+b2) over (1.9.3-2) ... Setting up liblz4-1:amd64 (1.9.4-1+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15224 files and directories currently installed.) Preparing to unpack .../libsystemd0_255.4-1+b1_amd64.deb ... Unpacking libsystemd0:amd64 (255.4-1+b1) over (247.3-7+deb11u4) ... Setting up libsystemd0:amd64 (255.4-1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15226 files and directories currently installed.) Preparing to unpack .../libcrypt1_1%3a4.4.36-4_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.36-4) over (1:4.4.18-4) ... Setting up libcrypt1:amd64 (1:4.4.36-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15226 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.42-4+b1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.42-4+b1) over (10.36-2+deb11u1) ... Setting up libpcre2-8-0:amd64 (10.42-4+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15227 files and directories currently installed.) Preparing to unpack .../libselinux1_3.5-2+b1_amd64.deb ... Unpacking libselinux1:amd64 (3.5-2+b1) over (3.1-3) ... Setting up libselinux1:amd64 (3.5-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15229 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.3-6_amd64.deb ... Unpacking libpam-modules-bin (1.5.3-6) over (1.4.0-9+deb11u1) ... Replacing files in old package libpam-modules:amd64 (1.4.0-9+deb11u1) ... Setting up libpam-modules-bin (1.5.3-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15233 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.3-6_amd64.deb ... Unpacking libpam-modules:amd64 (1.5.3-6) over (1.4.0-9+deb11u1) ... dpkg: warning: unable to delete old directory '/lib/x86_64-linux-gnu/security': Directory not empty Setting up libpam-modules:amd64 (1.5.3-6) ... Installing new version of config file /etc/security/limits.conf ... Installing new version of config file /etc/security/namespace.init ... Installing new version of config file /etc/security/sepermit.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15231 files and directories currently installed.) Preparing to unpack .../libbz2-1.0_1.0.8-5.1_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.8-5.1) over (1.0.8-4) ... Setting up libbz2-1.0:amd64 (1.0.8-5.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15231 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3.1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.3.dfsg-3.1) over (1:1.2.11.dfsg-2+deb11u2) ... Setting up zlib1g:amd64 (1:1.3.dfsg-3.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15231 files and directories currently installed.) Preparing to unpack .../archives/sed_4.9-2_amd64.deb ... Unpacking sed (4.9-2) over (4.7-1) ... Setting up sed (4.9-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15232 files and directories currently installed.) Preparing to unpack .../libblkid1_2.39.3-11_amd64.deb ... Unpacking libblkid1:amd64 (2.39.3-11) over (2.36.1-8+deb11u1) ... Setting up libblkid1:amd64 (2.39.3-11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15233 files and directories currently installed.) Preparing to unpack .../libmount1_2.39.3-11_amd64.deb ... Unpacking libmount1:amd64 (2.39.3-11) over (2.36.1-8+deb11u1) ... Setting up libmount1:amd64 (2.39.3-11) ... (Reading database ... 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Unpacking util-linux (2.39.3-11) over (2.36.1-8+deb11u1) ... dpkg: warning: unable to delete old directory '/usr/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/usr/lib/udev': Directory not empty dpkg: warning: unable to delete old directory '/etc/init.d': Directory not empty Setting up util-linux (2.39.3-11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15227 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.271+b3_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.271+b3) over (0.260) ... Setting up libdebconfclient0:amd64 (0.271+b3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15228 files and directories currently installed.) Preparing to unpack .../base-passwd_3.6.3_amd64.deb ... Unpacking base-passwd (3.6.3) over (3.5.51) ... Setting up base-passwd (3.6.3) ... (Reading database ... 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Unpacking libnghttp2-14:amd64 (1.59.0-1+b1) over (1.43.0-1+deb11u1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../libunistring5_1.2-1_amd64.deb ... Unpacking libunistring5:amd64 (1.2-1) ... Setting up libunistring5:amd64 (1.2-1) ... dpkg: libpsl5:amd64: dependency problems, but removing anyway as you requested: libcurl3-gnutls:amd64 depends on libpsl5 (>= 0.16.0). (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15236 files and directories currently installed.) Preparing to unpack .../libcurl3t64-gnutls_8.7.1-1_amd64.deb ... Unpacking libcurl3t64-gnutls:amd64 (8.7.1-1) ... Selecting previously unselected package libhtscodecs2:amd64. Preparing to unpack .../libhtscodecs2_1.6.0-1+b1_amd64.deb ... Unpacking libhtscodecs2:amd64 (1.6.0-1+b1) ... dpkg: libhts3:amd64: dependency problems, but removing anyway as you requested: python3-pysam depends on libhts3 (>= 1.10). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15250 files and directories currently installed.) Removing libhts3:amd64 (1.11-4) ... Selecting previously unselected package libhts3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15235 files and directories currently installed.) Preparing to unpack .../libhts3t64_1.19+ds-1.1+b1_amd64.deb ... Unpacking libhts3t64:amd64 (1.19+ds-1.1+b1) ... dpkg: libhogweed6:amd64: dependency problems, but removing anyway as you requested: librtmp1:amd64 depends on libhogweed6. libgnutls30:amd64 depends on libhogweed6 (>= 3.6). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15252 files and directories currently installed.) Removing libhogweed6:amd64 (3.7.3-1) ... dpkg: libnettle8:amd64: dependency problems, but removing anyway as you requested: librtmp1:amd64 depends on libnettle8. libgnutls30:amd64 depends on libnettle8 (>= 3.7~). Removing libnettle8:amd64 (3.7.3-1) ... dpkg: libgnutls30:amd64: dependency problems, but removing anyway as you requested: librtmp1:amd64 depends on libgnutls30 (>= 3.6.14). libldap-2.4-2:amd64 depends on libgnutls30 (>= 3.7.0). apt depends on libgnutls30 (>= 3.7.0). Removing libgnutls30:amd64 (3.7.1-5+deb11u4) ... Selecting previously unselected package libnettle8t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15211 files and directories currently installed.) Preparing to unpack .../libnettle8t64_3.9.1-2.2_amd64.deb ... Unpacking libnettle8t64:amd64 (3.9.1-2.2) ... Setting up libnettle8t64:amd64 (3.9.1-2.2) ... Selecting previously unselected package libhogweed6t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15220 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.9.1-2.2_amd64.deb ... Unpacking libhogweed6t64:amd64 (3.9.1-2.2) ... Setting up libhogweed6t64:amd64 (3.9.1-2.2) ... Selecting previously unselected package libffi8:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15227 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.6-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.6-1) ... Setting up libffi8:amd64 (3.4.6-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15232 files and directories currently installed.) Preparing to unpack .../libgnutls30t64_3.8.3-1.1+b1_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.3-1.1+b1) ... Setting up libgnutls30t64:amd64 (3.8.3-1.1+b1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15265 files and directories currently installed.) Preparing to unpack .../0-libbrotli1_1.1.0-2+b3_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b3) over (1.0.9-2+b2) ... Preparing to unpack .../1-libgssapi-krb5-2_1.20.1-6+b1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-6+b1) over (1.18.3-6+deb11u4) ... Preparing to unpack .../2-libkrb5-3_1.20.1-6+b1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-6+b1) over (1.18.3-6+deb11u4) ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15271 files and directories currently installed.) Removing libapt-pkg6.0:amd64 (2.2.4) ... Selecting previously unselected package libapt-pkg6.0t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15222 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.7.14_amd64.deb ... Unpacking libapt-pkg6.0t64:amd64 (2.7.14) ... Setting up libapt-pkg6.0t64:amd64 (2.7.14) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15274 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.2-2+b1_amd64.deb ... Unpacking libxxhash0:amd64 (0.8.2-2+b1) over (0.8.0-2) ... Setting up libxxhash0:amd64 (0.8.2-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15275 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.5-1_all.deb ... Unpacking libsemanage-common (3.5-1) over (3.1-1) ... Setting up libsemanage-common (3.5-1) ... Installing new version of config file /etc/selinux/semanage.conf ... Selecting previously unselected package libsepol2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15275 files and directories currently installed.) Preparing to unpack .../libsepol2_3.5-2_amd64.deb ... Unpacking libsepol2:amd64 (3.5-2) ... Setting up libsepol2:amd64 (3.5-2) ... Selecting previously unselected package libsemanage2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15279 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.5-1+b3_amd64.deb ... Unpacking libsemanage2:amd64 (3.5-1+b3) ... Setting up libsemanage2:amd64 (3.5-1+b3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15284 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.13+dfsg1-4_amd64.deb ... Unpacking passwd (1:4.13+dfsg1-4) over (1:4.8.1-1) ... Setting up passwd (1:4.13+dfsg1-4) ... Installing new version of config file /etc/default/useradd ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15318 files and directories currently installed.) Removing libsemanage1:amd64 (3.1-1+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15313 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.137_all.deb ... moving unchanged adduser.conf to adduser.conf.update-old. New dpkg-conffile will come from the package. Unpacking adduser (3.137) over (3.118+deb11u1) ... Setting up adduser (3.137) ... Installing new version of config file /etc/deluser.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15275 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.40-3_amd64.deb ... Unpacking gpgv (2.2.40-3) over (2.2.27-2+deb11u2) ... Setting up gpgv (2.2.40-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15275 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2023.4_all.deb ... Unpacking debian-archive-keyring (2023.4) over (2021.1.1+deb11u1) ... Setting up debian-archive-keyring (2023.4) ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-automatic.gpg ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15275 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.5-1_amd64.deb ... Unpacking libseccomp2:amd64 (2.5.5-1) over (2.5.1-1+deb11u1) ... Setting up libseccomp2:amd64 (2.5.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15275 files and directories currently installed.) Preparing to unpack .../archives/apt_2.7.14_amd64.deb ... Unpacking apt (2.7.14) over (2.2.4) ... Setting up apt (2.7.14) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt-compat ... Removing obsolete conffile /etc/kernel/postinst.d/apt-auto-removal ... Selecting previously unselected package libnumber-compare-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15268 files and directories currently installed.) Preparing to unpack .../libnumber-compare-perl_0.03-3_all.deb ... Unpacking libnumber-compare-perl (0.03-3) ... Setting up libnumber-compare-perl (0.03-3) ... Selecting previously unselected package libtext-glob-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15275 files and directories currently installed.) Preparing to unpack .../libtext-glob-perl_0.11-3_all.deb ... Unpacking libtext-glob-perl (0.11-3) ... Setting up libtext-glob-perl (0.11-3) ... Selecting previously unselected package libfile-find-rule-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15282 files and directories currently installed.) Preparing to unpack .../libfile-find-rule-perl_0.34-3_all.deb ... Unpacking libfile-find-rule-perl (0.34-3) ... Setting up perl-modules-5.38 (5.38.2-3.2) ... Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-6) ... Setting up libgdbm6t64:amd64 (1.23-5.1+b1) ... Setting up libgdbm-compat4t64:amd64 (1.23-5.1+b1) ... Setting up libperl5.38t64:amd64 (5.38.2-3.2) ... Setting up perl (5.38.2-3.2) ... Setting up libfile-find-rule-perl (0.34-3) ... Selecting previously unselected package usrmerge. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15297 files and directories currently installed.) Preparing to unpack .../archives/usrmerge_39_all.deb ... Unpacking usrmerge (39) ... Setting up usrmerge (39) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15304 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.66_all.deb ... Unpacking init-system-helpers (1.66) over (1.60) ... Setting up init-system-helpers (1.66) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15304 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.4+20240113-1_all.deb ... Unpacking ncurses-base (6.4+20240113-1) over (6.2+20201114-2+deb11u2) ... Setting up ncurses-base (6.4+20240113-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15304 files and directories currently installed.) Preparing to unpack .../archives/lsb-base_11.6_all.deb ... Unpacking lsb-base (11.6) over (11.1.0) ... Preparing to unpack .../sysvinit-utils_3.08-7_amd64.deb ... Unpacking sysvinit-utils (3.08-7) over (2.96-7+deb11u1) ... dpkg: warning: unable to delete old directory '/lib/init': Directory not empty Setting up sysvinit-utils (3.08-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15303 files and directories currently installed.) Preparing to unpack .../python3-pybigwig_0.3.22+dfsg-1+b2_amd64.deb ... Unpacking python3-pybigwig (0.3.22+dfsg-1+b2) over (0.3.17-1+b4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15301 files and directories currently installed.) Removing libbigwig0:amd64 (0.4.4+dfsg-2) ... Selecting previously unselected package libbigwig0t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15296 files and directories currently installed.) Preparing to unpack .../libbigwig0t64_0.4.7+dfsg-3.1+b1_amd64.deb ... Unpacking libbigwig0t64:amd64 (0.4.7+dfsg-3.1+b1) ... Preparing to unpack .../logsave_1.47.0-2.4_amd64.deb ... Unpacking logsave (1.47.0-2.4) over (1.46.2-2) ... dpkg: libext2fs2:amd64: dependency problems, but removing anyway as you requested: e2fsprogs depends on libext2fs2 (= 1.46.2-2). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15303 files and directories currently installed.) Removing libext2fs2:amd64 (1.46.2-2) ... Selecting previously unselected package libext2fs2t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15296 files and directories currently installed.) Preparing to unpack .../libext2fs2t64_1.47.0-2.4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:amd64 (1.47.0-2.4) ... Setting up libcom-err2:amd64 (1.47.0-2.4) ... Setting up libext2fs2t64:amd64 (1.47.0-2.4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15312 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.0-2.4_amd64.deb ... Unpacking e2fsprogs (1.47.0-2.4) over (1.46.2-2) ... dpkg: warning: unable to delete old directory '/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/udev': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd': Directory not empty Preparing to unpack .../libfreetype6_2.13.2+dfsg-1+b2_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.2+dfsg-1+b2) over (2.10.4+dfsg-1+deb11u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15311 files and directories currently installed.) Removing libpng16-16:amd64 (1.6.37-3) ... Selecting previously unselected package libpng16-16t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15300 files and directories currently installed.) Preparing to unpack .../libpng16-16t64_1.6.43-5_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.43-5) ... Preparing to unpack .../readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) over (8.1-1) ... dpkg: libreadline8:amd64: dependency problems, but removing anyway as you requested: libpython3.9-stdlib:amd64 depends on libreadline8 (>= 7.0~beta). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15312 files and directories currently installed.) Removing libreadline8:amd64 (8.1-1) ... Selecting previously unselected package libreadline8t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15299 files and directories currently installed.) Preparing to unpack .../libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Preparing to unpack .../libtirpc-common_1.3.4+ds-1.2_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.2) over (1.3.1-1+deb11u1) ... Preparing to unpack .../libnsl2_1.3.0-3+b1_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b1) over (1.3.0-2) ... dpkg: libtirpc3:amd64: dependency problems, but removing anyway as you requested: libpython3.9-stdlib:amd64 depends on libtirpc3 (>= 1.0.2). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15322 files and directories currently installed.) Removing libtirpc3:amd64 (1.3.1-1+deb11u1) ... Selecting previously unselected package libtirpc3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15316 files and directories currently installed.) Preparing to unpack .../libtirpc3t64_1.3.4+ds-1.2_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.2) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.8-3+b2_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.8-3+b2) ... Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) over (2.2.10-2+deb11u5) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.8-3+b2_amd64.deb ... Unpacking python3.11-minimal (3.11.8-3+b2) ... Preparing to unpack .../python3-scipy_1.11.4-6_amd64.deb ... Unpacking python3-scipy (1.11.4-6) over (1.6.0-2) ... dpkg: python3-reportlab-accel:amd64: dependency problems, but removing anyway as you requested: python3-reportlab depends on python3-reportlab-accel (>= 3.5.59-2). (Reading database ... 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Setting up libxcb1:amd64 (1.15-1) ... Setting up liblerc4:amd64 (4.0.0+ds-4+b1) ... Setting up libxcb-render0:amd64 (1.15-1) ... Setting up libtirpc-common (1.3.4+ds-1.2) ... Setting up libbrotli1:amd64 (1.1.0-2+b3) ... Setting up libsqlite3-0:amd64 (3.45.2-1) ... Setting up libpython3.12-minimal:amd64 (3.12.2-4+b2) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libpsl5t64:amd64 (0.21.2-1.1) ... Setting up libnghttp2-14:amd64 (1.59.0-1+b1) ... Setting up libdeflate0:amd64 (1.20-1) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up kineticstools-data (0.6.1+git20220223.1326a4d+dfsg-2) ... Setting up libgomp1:amd64 (14-20240315-1) ... Setting up libjbig0:amd64 (2.1-6.1+b1) ... Setting up libkrb5support0:amd64 (1.20.1-6+b1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Setting up tzdata (2024a-1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Mar 29 20:16:01 UTC 2024. Universal Time is now: Fri Mar 29 20:16:01 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up gcc-10-base:amd64 (10.5.0-4) ... Setting up libfontenc1:amd64 (1:1.1.8-1) ... Setting up libglib2.0-0t64:amd64 (2.78.4-6) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-3) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-2+b2) ... Setting up libx11-data (2:1.8.7-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b3) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.13-3+b1) ... Setting up libquadmath0:amd64 (14-20240315-1) ... Setting up libimagequant0:amd64 (2.18.0-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.43-5) ... Setting up libss2:amd64 (1.47.0-2.4) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libncursesw6:amd64 (6.4+20240113-1) ... Setting up libk5crypto3:amd64 (1.20.1-6+b1) ... Setting up logsave (1.47.0-2.4) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Setting up libgfortran5:amd64 (14-20240315-1) ... Setting up libwebp7:amd64 (1.3.2-0.4+b1) ... Setting up mount (2.39.3-11) ... Setting up libtiff6:amd64 (4.5.1+git230720-4) ... Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up libopenjp2-7:amd64 (2.5.0-2+b3) ... Setting up libx11-6:amd64 (2:1.8.7-1) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up mawk (1.3.4.20240123-1) ... Setting up libkrb5-3:amd64 (1.20.1-6+b1) ... Setting up libssh2-1t64:amd64 (1.11.0-4.1+b1) ... Setting up openssl (3.1.5-1.1) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libwebpmux3:amd64 (1.3.2-0.4+b1) ... Setting up libbsd0:amd64 (0.12.2-1) ... Setting up mailcap (3.70+nmu1) ... Setting up readline-common (8.2-4) ... Setting up gcc-9-base:amd64 (9.5.0-6) ... Setting up liblapack3:amd64 (3.12.0-3) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:amd64 (1.3.2-0.4+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up e2fsprogs (1.47.0-2.4) ... Installing new version of config file /etc/mke2fs.conf ... Setting up libldap-2.5-0:amd64 (2.5.16+dfsg-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 37 added, 20 removed; done. Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b2) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:amd64 (8.3.0-2+b1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Setting up libpython3.12-stdlib:amd64 (3.12.2-4+b2) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.2) ... Setting up libpython3.11-stdlib:amd64 (3.11.8-3+b2) ... Setting up libpython3.11t64:amd64 (3.11.8-3+b2) ... Setting up libcurl3t64-gnutls:amd64 (8.7.1-1) ... Setting up xfonts-utils (1:7.7+6) ... Setting up libcairo2:amd64 (1.18.0-3) ... Setting up libpython3.12t64:amd64 (3.12.2-4+b2) ... Setting up libraqm0:amd64 (0.10.1-1+b1) ... Setting up libnsl2:amd64 (1.3.0-3+b1) ... Setting up libhts3t64:amd64 (1.19+ds-1.1+b1) ... Setting up libbigwig0t64:amd64 (0.4.7+dfsg-3.1+b1) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.8-3+b2) ... Setting up python3 (3.11.8-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-freetype (2.4.0-1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-pil:amd64 (10.2.0-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-iso8601 (1.0.2-1) ... Setting up python3-certifi (2023.11.17-1) ... Setting up python3-avro (1.11.1+dfsg-2) ... Setting up python3-idna (3.6-2) ... Setting up python3-urllib3 (1.26.18-2) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-pysam (0.22.0+ds-1+b2) ... Setting up python3-cairo (1.25.1-2) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-requests (2.31.0+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-6) ... Setting up python3-pybigwig (0.3.22+dfsg-1+b2) ... Setting up python3-reportlab (4.1.0-4) ... Setting up python3-scipy (1.11.4-6) ... Setting up python3-pbcommand (2.1.1+git20220616.3f2e6c2-3) ... Processing triggers for libc-bin (2.37-15.1) ... Processing triggers for debianutils (5.17) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.83+dfsg1-1) ... Setting up python3-pbcore (2.1.2+dfsg-7) ... Setting up python3-kineticstools (0.6.1+git20220223.1326a4d+dfsg-2+b1) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 2m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-get', '-yf', 'dist-upgrade'] 2m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m21.4s DUMP: 231ea0ae698a78ccc55c205889a4627d - 2m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-cache', 'show', '--no-all-versions', 'python3-kineticstools'] 2m21.7s DUMP: Package: python3-kineticstools Source: kineticstools (0.6.1+git20220223.1326a4d+dfsg-2) Version: 0.6.1+git20220223.1326a4d+dfsg-2+b1 Installed-Size: 224 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3 (<< 3.12), python3 (>= 3.11~), python3-numpy, python3-pbcommand, python3-pbcore, python3-pybigwig, python3-scipy, python3:any, kineticstools-data (= 0.6.1+git20220223.1326a4d+dfsg-2) Description-en: detection of DNA modifications (Python 3 library) Tools for detecting DNA modifications from single molecule, real-time (SMRT?) sequencing data. This tool implements the P_ModificationDetection module in SMRT? Portal, used by the RS_Modification_Detection and RS_Modifications_and_Motif_Detection protocol. Researchers interested in understanding or extending the modification detection algorithms can use these tools as a starting point. . This package is part of the SMRTAnalysis suite and contains the backend Python 3 library. Description-md5: 0aa646763554c01a3ab894d63947050f Homepage: https://github.com/PacificBiosciences/kineticsTools Section: python Priority: optional Filename: pool/main/k/kineticstools/python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-2+b1_amd64.deb Size: 46748 MD5sum: 4e07eecfadbb9a473ca52229fab01cc3 SHA256: b2b291ada1f45a08f1ddcf5d4f5ed480d43577887e3edf25f4f9efebf8fe1273 2m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-cache', 'show', '--no-all-versions', 'python3-kineticstools'] 2m21.7s INFO: apt-cache knows about the following packages: python3-kineticstools 2m21.7s INFO: Running scripts pre_install 2m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_database-server'] 2m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_database-server'] 2m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_exceptions'] 2m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_exceptions'] 2m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_extras'] 2m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_extras'] 2m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_foreign_architecture'] 2m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_foreign_architecture'] 2m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-cache', 'policy'] 2m21.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-cache', 'policy'] 2m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-cache', 'policy', 'python3-kineticstools'] 2m21.9s DUMP: python3-kineticstools: Installed: 0.6.1+git20220223.1326a4d+dfsg-2+b1 Candidate: 0.6.1+git20220223.1326a4d+dfsg-2+b1 Version table: *** 0.6.1+git20220223.1326a4d+dfsg-2+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 2m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-cache', 'policy', 'python3-kineticstools'] 2m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-get', '-y', 'install', 'python3-kineticstools'] 2m22.6s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-kineticstools is already the newest version (0.6.1+git20220223.1326a4d+dfsg-2+b1). The following packages were automatically installed and are no longer required: libldap-2.4-2 libmpdec3 libperl5.32 libpython3.9 libpython3.9-minimal libpython3.9-stdlib libquadmath0 libtiff5 libwebp6 perl-modules-5.32 python3.9 python3.9-minimal Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m22.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-get', '-y', 'install', 'python3-kineticstools'] 2m22.6s INFO: Running scripts post_install 2m22.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_install_exceptions'] 2m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_install_exceptions'] 2m22.7s INFO: Running scripts post_distupgrade 2m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_distupgrade_exceptions'] 2m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_distupgrade_exceptions'] 2m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m22.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_distupgrade_zz_backports'] 2m22.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_distupgrade_zz_backports'] 2m22.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk'] 2m24.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk'] 2m24.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk'] 2m25.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk'] 2m25.3s INFO: Running scripts pre_install 2m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_database-server'] 2m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_database-server'] 2m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_exceptions'] 2m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_exceptions'] 2m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_extras'] 2m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_extras'] 2m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_foreign_architecture'] 2m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_foreign_architecture'] 2m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m25.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_install_foreign_architecture_i386'] 2m25.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-cache', 'policy'] 2m25.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 2m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-cache', 'policy'] 2m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-cache', 'policy', 'python3-kineticstools'] 2m25.4s DUMP: python3-kineticstools: Installed: 0.6.1+git20220223.1326a4d+dfsg-2+b1 Candidate: 0.6.1+git20220223.1326a4d+dfsg-2+b1 Version table: *** 0.6.1+git20220223.1326a4d+dfsg-2+b1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 2m25.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-cache', 'policy', 'python3-kineticstools'] 2m25.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-get', '-y', 'install', 'python3-kineticstools=0.6.1+git20220223.1326a4d+dfsg-2+b1'] 2m26.1s DUMP: Reading package lists... Building dependency tree... Reading state information... python3-kineticstools is already the newest version (0.6.1+git20220223.1326a4d+dfsg-2+b1). The following packages were automatically installed and are no longer required: libldap-2.4-2 libmpdec3 libperl5.32 libpython3.9 libpython3.9-minimal libpython3.9-stdlib libquadmath0 libtiff5 libwebp6 perl-modules-5.32 python3.9 python3.9-minimal Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-get', '-y', 'install', 'python3-kineticstools=0.6.1+git20220223.1326a4d+dfsg-2+b1'] 2m26.1s INFO: Running scripts post_install 2m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_install_exceptions'] 2m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_install_exceptions'] 2m26.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk'] 2m27.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk'] 2m27.3s INFO: /bin converted to /usr/bin by /usr merge 2m27.3s INFO: /lib converted to /usr/lib by /usr merge 2m27.3s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 2m27.3s INFO: /lib64 converted to /usr/lib64 by /usr merge 2m27.3s INFO: /sbin converted to /usr/sbin by /usr merge 2m29.1s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', '-ac', '--ignore-obsolete'] 2m31.9s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', '-ac', '--ignore-obsolete'] 2m31.9s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m31.9s DUMP: 0.15.6 2m31.9s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 2m31.9s INFO: Running adequate version 0.15.6 now. 2m31.9s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'python3-kineticstools'] 2m32.0s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'python3-kineticstools'] 2m32.0s INFO: Running scripts pre_remove 2m32.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m32.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m32.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m32.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m32.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m35.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m35.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m35.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m35.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m35.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m35.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_remove_exceptions'] 2m35.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/pre_remove_exceptions'] 2m35.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m35.7s DUMP: install ok installed adduser adduser 3.137 install ok installed apt apt 2.7.14 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed bsdutils bsdutils 1:2.39.3-11 install ok installed ca-certificates ca-certificates 20240203 install ok installed coreutils coreutils 9.4-3.1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.17 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.6 install ok installed e2fsprogs e2fsprogs 1.47.0-2.4 install ok installed findutils findutils 4.9.0-5 install ok installed fontconfig-config fontconfig-config 2.15.0-1.1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-urw-base35 fonts-urw-base35 20200910-8 install ok installed gcc-10-base:amd64 gcc-10-base 10.5.0-4 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240315-1 install ok installed gcc-9-base:amd64 gcc-9-base 9.5.0-6 install ok installed gpgv gpgv 2.2.40-3 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed kineticstools-data kineticstools-data 0.6.1+git20220223.1326a4d+dfsg-2 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.7.14 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2.1 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2.1 install ok installed libbigwig0t64:amd64 libbigwig0t64 0.4.7+dfsg-3.1+b1 install ok installed libblas3:amd64 libblas3 3.12.0-3 install ok installed libblkid1:amd64 libblkid1 2.39.3-11 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b3 install ok installed libbsd0:amd64 libbsd0 0.12.2-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.37-15.1 install ok installed libc6:amd64 libc6 2.37-15.1 install ok installed libcairo2:amd64 libcairo2 1.18.0-3 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2.4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libcurl3t64-gnutls:amd64 libcurl3t64-gnutls 8.7.1-1 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-6 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271+b3 install ok installed libdeflate0:amd64 libdeflate0 1.20-1 install ok installed libexpat1:amd64 libexpat1 2.6.2-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.0-2.4 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-1.1 install ok installed libfontenc1:amd64 libfontenc1 1:1.1.8-1 install ok installed libfreetype6:amd64 libfreetype6 2.13.2+dfsg-1+b2 install ok installed libfribidi0:amd64 libfribidi0 1.0.13-3+b1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240315-1 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.23-5.1+b1 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.23-5.1+b1 install ok installed libgfortran5:amd64 libgfortran5 14-20240315-1 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.78.4-6 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.3-1.1+b1 install ok installed libgomp1:amd64 libgomp1 14-20240315-1 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-6+b1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 8.3.0-2+b1 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.9.1-2.2 install ok installed libhts3t64:amd64 libhts3t64 1.19+ds-1.1+b1 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.6.0-1+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libimagequant0:amd64 libimagequant0 2.18.0-1 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-2+b2 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-6+b1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-6+b1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-6+b1 install ok installed liblapack3:amd64 liblapack3 3.12.0-3 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1+b1 install ok installed liblcms2-2:amd64 liblcms2-2 2.14-2+b1 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.57+dfsg-3+deb11u1 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.16+dfsg-2 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-4+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzma5:amd64 liblzma5 5.6.1+really5.4.5-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.39.3-11 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-2 install ok installed libncursesw6:amd64 libncursesw6 6.4+20240113-1 install ok installed libnettle8t64:amd64 libnettle8t64 3.9.1-2.2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.59.0-1+b1 install ok installed libnsl2:amd64 libnsl2 1.3.0-3+b1 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2+b3 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-6 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-6 install ok installed libpam-runtime libpam-runtime 1.5.3-6 install ok installed libpam0g:amd64 libpam0g 1.5.3-6 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libpcre3:amd64 libpcre3 2:8.39-15+b1 install ok installed libperl5.32:amd64 libperl5.32 5.32.1-4+deb11u3 install ok installed libperl5.38t64:amd64 libperl5.38t64 5.38.2-3.2 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.42.2-1+b1 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.43-5 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.8-1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.8-3+b2 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.8-3+b2 install ok installed libpython3.11t64:amd64 libpython3.11t64 3.11.8-3+b2 install ok installed libpython3.12-minimal:amd64 libpython3.12-minimal 3.12.2-4+b2 install ok installed libpython3.12-stdlib:amd64 libpython3.12-stdlib 3.12.2-4+b2 install ok installed libpython3.12t64:amd64 libpython3.12t64 3.12.2-4+b2 install ok installed libpython3.9:amd64 libpython3.9 3.9.2-1 install ok installed libpython3.9-minimal:amd64 libpython3.9-minimal 3.9.2-1 install ok installed libpython3.9-stdlib:amd64 libpython3.9-stdlib 3.9.2-1 install ok installed libquadmath0:amd64 libquadmath0 14-20240315-1 install ok installed libraqm0:amd64 libraqm0 0.10.1-1+b1 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-4 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b3 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-6 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-6 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b1 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b3 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.3.2-0.4+b1 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-11 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.45.2-1 install ok installed libss2:amd64 libss2 1.47.0-2.4 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.0-4.1+b1 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libssl3t64:amd64 libssl3t64 3.1.5-1.1 install ok installed libstdc++6:amd64 libstdc++6 14-20240315-1 install ok installed libsystemd0:amd64 libsystemd0 255.4-1+b1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtiff5:amd64 libtiff5 4.2.0-1+deb11u5 install ok installed libtiff6:amd64 libtiff6 4.5.1+git230720-4 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1.2 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.4+ds-1.2 install ok installed libudev1:amd64 libudev1 255.4-1+b1 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.39.3-11 install ok installed libwebp6:amd64 libwebp6 0.6.1-2.1+deb11u2 install ok installed libwebp7:amd64 libwebp7 1.3.2-0.4+b1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.3.2-0.4+b1 install ok installed libwebpmux3:amd64 libwebpmux3 1.3.2-0.4+b1 install ok installed libx11-6:amd64 libx11-6 2:1.8.7-1 install ok installed libx11-data libx11-data 2:1.8.7-1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.15-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.15-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2.4 install ok installed lsb-base lsb-base 11.6 install ok installed mailcap mailcap 3.70+nmu1 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed media-types media-types 10.1.0 install ok installed mime-support mime-support 3.66 install ok installed mount mount 2.39.3-11 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed netbase netbase 6.4 install ok installed openssl openssl 3.1.5-1.1 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl perl 5.38.2-3.2 install ok installed perl-base perl-base 5.38.2-3.2 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-4+deb11u3 install ok installed perl-modules-5.38 perl-modules-5.38 5.38.2-3.2 install ok installed python3 python3 3.11.8-1 install ok installed python3-avro python3-avro 1.11.1+dfsg-2 install ok installed python3-biopython python3-biopython 1.83+dfsg1-1 install ok installed python3-cairo python3-cairo 1.25.1-2 install ok installed python3-certifi python3-certifi 2023.11.17-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-1 install ok installed python3-charset-normalizer python3-charset-normalizer 3.3.2-1 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-freetype python3-freetype 2.4.0-1 install ok installed python3-idna python3-idna 3.6-2 install ok installed python3-iso8601 python3-iso8601 1.0.2-1 install ok installed python3-kineticstools python3-kineticstools 0.6.1+git20220223.1326a4d+dfsg-2+b1 install ok installed python3-minimal python3-minimal 3.11.8-1 install ok installed python3-numpy python3-numpy 1:1.26.4+ds-6 install ok installed python3-pbcommand python3-pbcommand 2.1.1+git20220616.3f2e6c2-3 install ok installed python3-pbcore python3-pbcore 2.1.2+dfsg-7 install ok installed python3-pil:amd64 python3-pil 10.2.0-1 install ok installed python3-pkg-resources python3-pkg-resources 68.1.2-2 install ok installed python3-pybigwig python3-pybigwig 0.3.22+dfsg-1+b2 install ok installed python3-pysam python3-pysam 0.22.0+ds-1+b2 install ok installed python3-reportlab python3-reportlab 4.1.0-4 install ok installed python3-requests python3-requests 2.31.0+dfsg-1 install ok installed python3-rlpycairo python3-rlpycairo 0.3.0-3 install ok installed python3-scipy python3-scipy 1.11.4-6 install ok installed python3-six python3-six 1.16.0-6 install ok installed python3-tz python3-tz 2024.1-2 install ok installed python3-urllib3 python3-urllib3 1.26.18-2 install ok installed python3.11 python3.11 3.11.8-3+b2 install ok installed python3.11-minimal python3.11-minimal 3.11.8-3+b2 install ok installed python3.9 python3.9 3.9.2-1 install ok installed python3.9-minimal python3.9-minimal 3.9.2-1 install ok installed readline-common readline-common 8.2-4 install ok installed sed sed 4.9-2 install ok installed sgml-base sgml-base 1.31 install ok installed sysvinit-utils sysvinit-utils 3.08-7 install ok installed tar tar 1.35+dfsg-3 install ok installed tzdata tzdata 2024a-1 install ok installed usrmerge usrmerge 39 install ok installed util-linux util-linux 2.39.3-11 install ok installed w3c-sgml-lib w3c-sgml-lib 1.3-3 install ok installed x11-common x11-common 1:7.7+23 install ok installed xfonts-encodings xfonts-encodings 1:1.0.4-2.2 install ok installed xfonts-utils xfonts-utils 1:7.7+6 install ok installed xml-core xml-core 0.19 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3.1 2m35.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m35.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-get', 'remove', 'ca-certificates', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-urw-base35', 'kineticstools-data', 'libbigwig0t64:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcurl3t64-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libopenjp2-7:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.11t64:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.12t64:amd64', 'libpython3.9:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libtiff5:amd64', 'libtiff6:amd64', 'libwebp6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxrender1:amd64', 'mailcap', 'media-types', 'mime-support', 'netbase', 'openssl', 'perl-modules-5.32', 'python3', 'python3-avro', 'python3-biopython', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-decorator', 'python3-freetype', 'python3-idna', 'python3-iso8601', 'python3-minimal', 'python3-numpy', 'python3-pbcommand', 'python3-pbcore', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-pybigwig', 'python3-pysam', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-scipy', 'python3-six', 'python3-tz', 'python3-urllib3', 'python3.11', 'python3.11-minimal', 'python3.9', 'python3.9-minimal', 'readline-common', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'python3-kineticstools'] 3m24.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: ca-certificates fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 kineticstools-data libbigwig0t64 libblas3 libbrotli1 libbsd0 libcairo2 libcurl3t64-gnutls libdeflate0 libexpat1 libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0t64 libgomp1 libgraphite2-3 libharfbuzz0b libhts3t64 libhtscodecs2 libimagequant0 libjbig0 libjpeg62-turbo liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 libldap-2.5-0 liblerc4 libmpdec3 libncursesw6 libnghttp2-14 libopenjp2-7 libperl5.32 libpixman-1-0 libpng16-16t64 libpsl5t64 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libpython3.11t64 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libpython3.9 libpython3.9-minimal libpython3.9-stdlib libquadmath0 libraqm0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsqlite3-0 libssh2-1t64 libtiff5 libtiff6 libwebp6 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxrender1 mailcap media-types mime-support netbase openssl perl-modules-5.32 python3 python3-avro python3-biopython python3-cairo python3-certifi python3-chardet python3-charset-normalizer python3-decorator python3-freetype python3-idna python3-iso8601 python3-kineticstools python3-minimal python3-numpy python3-pbcommand python3-pbcore python3-pil python3-pkg-resources python3-pybigwig python3-pysam python3-reportlab python3-requests python3-rlpycairo python3-scipy python3-six python3-tz python3-urllib3 python3.11 python3.11-minimal python3.9 python3.9-minimal readline-common sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 0 upgraded, 0 newly installed, 120 to remove and 0 not upgraded. After this operation, 426 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18497 files and directories currently installed.) Removing python3-kineticstools (0.6.1+git20220223.1326a4d+dfsg-2+b1) ... Removing python3-pbcommand (2.1.1+git20220616.3f2e6c2-3) ... Removing python3-requests (2.31.0+dfsg-1) ... Removing python3-certifi (2023.11.17-1) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing python3-pbcore (2.1.2+dfsg-7) ... Removing python3-biopython (1.83+dfsg1-1) ... Removing python3-reportlab (4.1.0-4) ... Removing python3-rlpycairo (0.3.0-3) ... Removing python3-cairo (1.25.1-2) ... Removing libcairo2:amd64 (1.18.0-3) ... Removing libfontconfig1:amd64 (2.15.0-1.1) ... Removing fontconfig-config (2.15.0-1.1) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing fonts-urw-base35 (20200910-8) ... Removing kineticstools-data (0.6.1+git20220223.1326a4d+dfsg-2) ... Removing python3-pybigwig (0.3.22+dfsg-1+b2) ... Removing libbigwig0t64:amd64 (0.4.7+dfsg-3.1+b1) ... Removing python3-scipy (1.11.4-6) ... Removing python3-numpy (1:1.26.4+ds-6) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Removing liblapack3:amd64 (3.12.0-3) ... Removing libblas3:amd64 (3.12.0-3) ... Removing xfonts-utils (1:7.7+6) ... Removing python3-pil:amd64 (10.2.0-1) ... Removing libraqm0:amd64 (0.10.1-1+b1) ... Removing python3-pysam (0.22.0+ds-1+b2) ... Removing libhts3t64:amd64 (1.19+ds-1.1+b1) ... Removing libcurl3t64-gnutls:amd64 (8.7.1-1) ... Removing libxrender1:amd64 (1:0.9.10-1.1) ... Removing libtiff5:amd64 (4.2.0-1+deb11u5) ... Removing libtiff6:amd64 (4.5.1+git230720-4) ... Removing libdeflate0:amd64 (1.20-1) ... Removing python3.9 (3.9.2-1) ... Removing python3.9-minimal (3.9.2-1) ... Removing libpython3.9:amd64 (3.9.2-1) ... Removing libfontenc1:amd64 (1:1.1.8-1) ... Removing libfribidi0:amd64 (1.0.13-3+b1) ... Removing libgfortran5:amd64 (14-20240315-1) ... Removing libharfbuzz0b:amd64 (8.3.0-2+b1) ... Removing libglib2.0-0t64:amd64 (2.78.4-6) ... Removing libimagequant0:amd64 (2.18.0-1) ... Removing libgomp1:amd64 (14-20240315-1) ... Removing libgraphite2-3:amd64 (1.3.14-2) ... Removing libhtscodecs2:amd64 (1.6.0-1+b1) ... Removing libjbig0:amd64 (2.1-6.1+b1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-2+b2) ... Removing liblcms2-2:amd64 (2.14-2+b1) ... Removing libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Removing libldap-2.5-0:amd64 (2.5.16+dfsg-2) ... Removing liblerc4:amd64 (4.0.0+ds-4+b1) ... Removing libpython3.9-stdlib:amd64 (3.9.2-1) ... Removing libmpdec3:amd64 (2.5.1-2) ... Removing libpython3.12t64:amd64 (3.12.2-4+b2) ... Removing libpython3.12-stdlib:amd64 (3.12.2-4+b2) ... Removing python3-avro (1.11.1+dfsg-2) ... Removing python3-urllib3 (1.26.18-2) ... Removing python3-six (1.16.0-6) ... Removing libnghttp2-14:amd64 (1.59.0-1+b1) ... Removing libopenjp2-7:amd64 (2.5.0-2+b3) ... Removing libperl5.32:amd64 (5.32.1-4+deb11u3) ... Removing libpixman-1-0:amd64 (0.42.2-1+b1) ... Removing libpsl5t64:amd64 (0.21.2-1.1) ... Removing libpython3.11t64:amd64 (3.11.8-3+b2) ... Removing libpython3.12-minimal:amd64 (3.12.2-4+b2) ... Removing libpython3.9-minimal:amd64 (3.9.2-1) ... Removing libquadmath0:amd64 (14-20240315-1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b3) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Removing libwebpmux3:amd64 (1.3.2-0.4+b1) ... Removing libwebpdemux2:amd64 (1.3.2-0.4+b1) ... Removing libwebp7:amd64 (1.3.2-0.4+b1) ... Removing libsharpyuv0:amd64 (1.3.2-0.4+b1) ... Removing libssh2-1t64:amd64 (1.11.0-4.1+b1) ... Removing libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Removing libxcb-render0:amd64 (1.15-1) ... Removing libxcb-shm0:amd64 (1.15-1) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing mime-support (3.66) ... Removing mailcap (3.70+nmu1) ... Removing openssl (3.1.5-1.1) ... Removing perl-modules-5.32 (5.32.1-4+deb11u3) ... Removing python3-chardet (5.2.0+dfsg-1) ... Removing python3-charset-normalizer (3.3.2-1) ... Removing python3-decorator (5.1.1-5) ... Removing python3-freetype (2.4.0-1) ... Removing python3-idna (3.6-2) ... Removing python3-iso8601 (1.0.2-1) ... Removing python3-pkg-resources (68.1.2-2) ... Removing python3-tz (2024.1-2) ... Removing w3c-sgml-lib (1.3-3) ... Removing xml-core (0.19) ... Removing sgml-base (1.31) ... Removing xfonts-encodings (1:1.0.4-2.2) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libfreetype6:amd64 (2.13.2+dfsg-1+b2) ... Removing libbrotli1:amd64 (1.1.0-2+b3) ... Removing libx11-6:amd64 (2:1.8.7-1) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.12.2-1) ... Removing python3 (3.11.8-1) ... Removing python3.11 (3.11.8-3+b2) ... Removing libpng16-16t64:amd64 (1.6.43-5) ... Removing libpython3-stdlib:amd64 (3.11.8-1) ... Removing python3-minimal (3.11.8-1) ... Removing python3.11-minimal (3.11.8-3+b2) ... Removing libx11-data (2:1.8.7-1) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing libexpat1:amd64 (2.6.2-1) ... Removing libpython3.11-stdlib:amd64 (3.11.8-3+b2) ... find: '/usr/lib/python3': No such file or directory Removing libncursesw6:amd64 (6.4+20240113-1) ... Removing libpython3.11-minimal:amd64 (3.11.8-3+b2) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8t64:amd64 (8.2-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.45.2-1) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-4) ... Processing triggers for libc-bin (2.37-15.1) ... 3m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-get', 'remove', 'ca-certificates', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-urw-base35', 'kineticstools-data', 'libbigwig0t64:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcurl3t64-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libopenjp2-7:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.11t64:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.12t64:amd64', 'libpython3.9:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libtiff5:amd64', 'libtiff6:amd64', 'libwebp6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxrender1:amd64', 'mailcap', 'media-types', 'mime-support', 'netbase', 'openssl', 'perl-modules-5.32', 'python3', 'python3-avro', 'python3-biopython', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-decorator', 'python3-freetype', 'python3-idna', 'python3-iso8601', 'python3-minimal', 'python3-numpy', 'python3-pbcommand', 'python3-pbcore', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-pybigwig', 'python3-pysam', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-scipy', 'python3-six', 'python3-tz', 'python3-urllib3', 'python3.11', 'python3.11-minimal', 'python3.9', 'python3.9-minimal', 'readline-common', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core', 'python3-kineticstools'] 3m24.4s INFO: Running scripts post_remove 3m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_remove_exceptions'] 3m24.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_remove_exceptions'] 3m24.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'dpkg', '--purge', 'ca-certificates', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-urw-base35', 'kineticstools-data', 'libbigwig0t64:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcurl3t64-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libopenjp2-7:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.11t64:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.12t64:amd64', 'libpython3.9:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libtiff5:amd64', 'libtiff6:amd64', 'libwebp6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxrender1:amd64', 'mailcap', 'media-types', 'mime-support', 'netbase', 'openssl', 'perl-modules-5.32', 'python3', 'python3-avro', 'python3-biopython', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-decorator', 'python3-freetype', 'python3-idna', 'python3-iso8601', 'python3-minimal', 'python3-numpy', 'python3-pbcommand', 'python3-pbcore', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-pybigwig', 'python3-pysam', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-scipy', 'python3-six', 'python3-tz', 'python3-urllib3', 'python3.11', 'python3.11-minimal', 'python3.9', 'python3.9-minimal', 'readline-common', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core'] 3m25.0s DUMP: (Reading database ... 7537 files and directories currently installed.) Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for fontconfig-config (2.15.0-1.1) ... dpkg: warning: while removing fontconfig-config, directory '/etc/fonts/conf.d' not empty so not removed Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... dpkg: warning: while removing fonts-dejavu-mono, directory '/etc/fonts' not empty so not removed Purging configuration files for fonts-urw-base35 (20200910-8) ... dpkg: warning: ignoring request to remove kineticstools-data which isn't installed dpkg: warning: ignoring request to remove libbigwig0t64 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed dpkg: warning: ignoring request to remove libcurl3t64-gnutls which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfontenc1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0t64:amd64 (2.78.4-6) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhts3t64 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libperl5.32 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16t64 which isn't installed dpkg: warning: ignoring request to remove libpsl5t64 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.8-3+b2) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11t64 which isn't installed Purging configuration files for libpython3.12-minimal:amd64 (3.12.2-4+b2) ... dpkg: warning: ignoring request to remove libpython3.12-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.12t64 which isn't installed dpkg: warning: ignoring request to remove libpython3.9 which isn't installed Purging configuration files for libpython3.9-minimal:amd64 (3.9.2-1) ... dpkg: warning: ignoring request to remove libpython3.9-stdlib which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-4) ... dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1t64 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb-render0 which isn't installed dpkg: warning: ignoring request to remove libxcb-shm0 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed Purging configuration files for mailcap (3.70+nmu1) ... Purging configuration files for media-types (10.1.0) ... dpkg: warning: ignoring request to remove mime-support which isn't installed Purging configuration files for netbase (6.4) ... Purging configuration files for openssl (3.1.5-1.1) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed Purging configuration files for python3 (3.11.8-1) ... dpkg: warning: ignoring request to remove python3-avro which isn't installed dpkg: warning: ignoring request to remove python3-biopython which isn't installed dpkg: warning: ignoring request to remove python3-cairo which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-freetype which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-iso8601 which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-pbcommand which isn't installed dpkg: warning: ignoring request to remove python3-pbcore which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-pybigwig which isn't installed dpkg: warning: ignoring request to remove python3-pysam which isn't installed dpkg: warning: ignoring request to remove python3-reportlab which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-rlpycairo which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed Purging configuration files for python3.11-minimal (3.11.8-3+b2) ... dpkg: warning: ignoring request to remove python3.9 which isn't installed Purging configuration files for python3.9-minimal (3.9.2-1) ... Purging configuration files for readline-common (8.2-4) ... Purging configuration files for sgml-base (1.31) ... Purging configuration files for w3c-sgml-lib (1.3-3) ... Purging configuration files for x11-common (1:7.7+23) ... dpkg: warning: while removing x11-common, directory '/etc/init.d' not empty so not removed dpkg: warning: ignoring request to remove xfonts-encodings which isn't installed Purging configuration files for xfonts-utils (1:7.7+6) ... Purging configuration files for xml-core (0.19) ... 3m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'dpkg', '--purge', 'ca-certificates', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-urw-base35', 'kineticstools-data', 'libbigwig0t64:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcairo2:amd64', 'libcurl3t64-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfontenc1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libopenjp2-7:amd64', 'libperl5.32:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.11t64:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.12t64:amd64', 'libpython3.9:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libtiff5:amd64', 'libtiff6:amd64', 'libwebp6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxrender1:amd64', 'mailcap', 'media-types', 'mime-support', 'netbase', 'openssl', 'perl-modules-5.32', 'python3', 'python3-avro', 'python3-biopython', 'python3-cairo', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-decorator', 'python3-freetype', 'python3-idna', 'python3-iso8601', 'python3-minimal', 'python3-numpy', 'python3-pbcommand', 'python3-pbcore', 'python3-pil:amd64', 'python3-pkg-resources', 'python3-pybigwig', 'python3-pysam', 'python3-reportlab', 'python3-requests', 'python3-rlpycairo', 'python3-scipy', 'python3-six', 'python3-tz', 'python3-urllib3', 'python3.11', 'python3.11-minimal', 'python3.9', 'python3.9-minimal', 'readline-common', 'sgml-base', 'w3c-sgml-lib', 'x11-common', 'xfonts-encodings', 'xfonts-utils', 'xml-core'] 3m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'dpkg', '--purge', 'python3-kineticstools'] 3m25.0s DUMP: dpkg: warning: ignoring request to remove python3-kineticstools which isn't installed 3m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'dpkg', '--purge', 'python3-kineticstools'] 3m25.0s INFO: Running scripts post_purge 3m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_purge_exceptions'] 3m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_purge_exceptions'] 3m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'dpkg', '--purge', '--pending'] 3m25.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'dpkg', '--purge', '--pending'] 3m25.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'dpkg', '--remove', '--pending'] 3m25.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'dpkg', '--remove', '--pending'] 3m25.1s INFO: Running scripts post_test 3m25.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_test_exceptions'] 3m25.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'tmp/scripts/post_test_exceptions'] 3m25.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk'] 3m25.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk'] 3m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'dpkg-divert', '--list'] 3m25.6s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64 diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64 3m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'dpkg-divert', '--list'] 3m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-get', 'clean'] 3m25.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk', 'apt-get', 'clean'] 3m25.7s DEBUG: Recording chroot state 3m26.5s INFO: Warning: Package purging left files on system: /etc/fonts/ owned by: fontconfig-config, fonts-urw-base35, fonts-dejavu-core, fonts-dejavu-mono /etc/fonts/conf.d/ owned by: fontconfig-config, fonts-urw-base35, fonts-dejavu-core, fonts-dejavu-mono /etc/fonts/conf.d/70-no-bitmaps-except-emoji.conf -> /usr/share/fontconfig/conf.avail/70-no-bitmaps-except-emoji.conf not owned 3m27.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk/dev/shm'] 3m27.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk/dev/shm'] 3m27.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk/dev/console'] 3m27.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk/dev/console'] 3m27.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk/dev/ptmx'] 3m27.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk/dev/ptmx'] 3m27.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk/dev/pts'] 3m27.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk/dev/pts'] 3m27.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk/proc'] 3m27.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk/proc'] 3m27.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk'] 3m27.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpvcxw4rlk'] 3m27.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpvcxw4rlk 3m27.4s INFO: PASS: Upgrading between Debian distributions. 3m27.4s INFO: PASS: All tests. 3m27.4s INFO: piuparts run ends. ret=0 End: 2024-03-29 20:18:14 GMT