Start: 2024-02-05 03:41:46 GMT [stable] Package: python3-pairtools-dbg Source: pairtools (0.3.0-2) Version: 0.3.0-2+b2 Installed-Size: 1995 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), python3-dbg (<< 3.10), python3-dbg (>= 3.9~), python3-dbg:any, python3-pairtools (= 0.3.0-2+b2) Description: Process sequencing data from a Hi-C experiment (debug build) Homepage: https://github.com/mirnylab/pairtools Build-Ids: 22045b19bcac9e2d60b24b91c44d5063c5977de1 Description-md5: 13a9c043e9792f7031380cdbf23909e1 Tag: role::debug-symbols Section: debug Priority: optional Filename: pool/main/p/pairtools/python3-pairtools-dbg_0.3.0-2+b2_amd64.deb Size: 731776 MD5sum: c4ef1539c5b8654bda5b3086f3d44785 SHA256: 6011d37bea23d036438cb83c017f7f66cdc94112e8e983a9f087d9b8dba0f8c7 [sid] Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d stable -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat --apt python3-pairtools-dbg=None 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.3.1~202401311836~1.3-2-g28295102 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d stable -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat --apt python3-pairtools-dbg=None 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-27-amd64 #1 SMP Debian 5.10.205-2 (2023-12-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpbw6vw966 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpbw6vw966 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m2.2s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m2.2s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpbw6vw966/proc'] 0m2.2s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpbw6vw966/proc'] 0m2.2s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpbw6vw966/dev/pts'] 0m2.2s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpbw6vw966/dev/pts'] 0m2.2s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpbw6vw966/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpbw6vw966/dev/ptmx'] 0m2.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpbw6vw966/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpbw6vw966/dev/ptmx'] 0m2.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpbw6vw966/dev/console'] 0m2.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpbw6vw966/dev/console'] 0m2.3s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpbw6vw966/dev/shm'] 0m2.3s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpbw6vw966/dev/shm'] 0m2.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m2.3s DEBUG: Created policy-rc.d and chmodded it. 0m2.3s DEBUG: Created resolv.conf. 0m2.3s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpbw6vw966/tmp/scripts/ 0m2.3s INFO: Running scripts post_chroot_unpack 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'apt-get', 'update'] 0m3.5s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Reading package lists... 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'apt-get', 'update'] 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'apt-get', '-yf', 'dist-upgrade'] 0m4.0s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'apt-get', '-yf', 'dist-upgrade'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.2s DUMP: cd994be14815166bf41ad7cebd6f56fc - 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.2s INFO: Running scripts post_setup 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_setup_dummy_users'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_setup_dummy_users'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_setup_forbid_home'] 0m5.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_setup_forbid_home'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_setup_minimize'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_setup_minimize'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_setup_zz_backports'] 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_setup_zz_backports'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.6s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u8 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u6 install ok installed libc6:amd64 libc6 2.31-13+deb11u6 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u3 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u2 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1 install ok installed tzdata tzdata 2021a-1+deb11u10 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.6s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat 0m5.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbw6vw966'] 0m6.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbw6vw966'] 0m6.0s INFO: Running scripts is_testable 0m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/is_testable_uninstallable'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/is_testable_uninstallable'] 0m6.1s INFO: Running scripts pre_test 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_test_exceptions'] 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_test_exceptions'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_test_root_password'] 0m6.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_test_root_password'] 0m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'apt-cache', 'show', '--no-all-versions', 'python3-pairtools-dbg'] 0m6.4s DUMP: Package: python3-pairtools-dbg Source: pairtools (0.3.0-2) Version: 0.3.0-2+b2 Installed-Size: 1995 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libc6 (>= 2.14), python3-dbg (<< 3.10), python3-dbg (>= 3.9~), python3-dbg:any, python3-pairtools (= 0.3.0-2+b2) Description-en: Process sequencing data from a Hi-C experiment (debug build) Debug files for python3-pairtools, a simple and fast command-line framework to process sequencing data from a Hi-C experiment. . Process pair-end sequence alignments and perform the following operations: . - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end sequences of Hi-C DNA molecules - Sort .pairs files for downstream analyses - Detect, tag and remove PCR/optical duplicates - Generate extensive statistics of Hi-C datasets - Select Hi-C pairs given flexibly defined criteria - Restore .sam alignments from Hi-C pairs Description-md5: 13a9c043e9792f7031380cdbf23909e1 Homepage: https://github.com/mirnylab/pairtools Build-Ids: 22045b19bcac9e2d60b24b91c44d5063c5977de1 Tag: role::debug-symbols Section: debug Priority: optional Filename: pool/main/p/pairtools/python3-pairtools-dbg_0.3.0-2+b2_amd64.deb Size: 731776 MD5sum: c4ef1539c5b8654bda5b3086f3d44785 SHA256: 6011d37bea23d036438cb83c017f7f66cdc94112e8e983a9f087d9b8dba0f8c7 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'apt-cache', 'show', '--no-all-versions', 'python3-pairtools-dbg'] 0m6.4s INFO: apt-cache knows about the following packages: python3-pairtools-dbg 0m6.4s INFO: Running scripts pre_install 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_install_database-server'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_install_database-server'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_install_exceptions'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_install_exceptions'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_install_extras'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_install_extras'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'apt-cache', 'policy'] 0m6.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.8,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'apt-cache', 'policy'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'apt-cache', 'policy', 'python3-pairtools-dbg'] 0m6.5s DUMP: python3-pairtools-dbg: Installed: (none) Candidate: 0.3.0-2+b2 Version table: 0.3.0-2+b2 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'apt-cache', 'policy', 'python3-pairtools-dbg'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'apt-get', '-y', 'install', 'python3-pairtools-dbg'] 0m20.7s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: cython3 libblas3 libexpat1 libgfortran5 liblapack3 libmpdec3 libncursesw6 libpython3-dbg libpython3-stdlib libpython3.9-dbg libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 libsqlite3-0 media-types python3 python3-click python3-colorama python3-dbg python3-minimal python3-nose python3-numpy python3-pairtools python3-pkg-resources python3.9 python3.9-dbg python3.9-minimal readline-common Suggested packages: cython-doc python3-doc python3-tk python3-venv python-nose-doc gcc gfortran python-numpy-doc python3-dev python3-numpy-dbg python3-pytest python3-setuptools python3.9-venv python3.9-doc binutils python3-gdbm-dbg python3-tk-dbg binfmt-support readline-doc Recommended packages: python3-dev gcc libgpm2 ca-certificates gdb The following NEW packages will be installed: cython3 libblas3 libexpat1 libgfortran5 liblapack3 libmpdec3 libncursesw6 libpython3-dbg libpython3-stdlib libpython3.9-dbg libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 libsqlite3-0 media-types python3 python3-click python3-colorama python3-dbg python3-minimal python3-nose python3-numpy python3-pairtools python3-pairtools-dbg python3-pkg-resources python3.9 python3.9-dbg python3.9-minimal readline-common 0 upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 50.4 MB of archives. After this operation, 182 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.2+20201114-2+deb11u2 [132 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 cython3 amd64 0.29.21-3+b1 [1312 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3+deb11u1 [153 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 libquadmath0 amd64 10.2.1-6 [145 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3+deb11u1 [2166 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-dbg amd64 3.9.2-1 [15.0 MB] Get:21 http://deb.debian.org/debian bullseye/main amd64 libpython3-dbg amd64 3.9.2-3 [21.6 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 python3-colorama all 0.4.4-1 [28.5 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 python3-click all 7.1.2-1 [75.7 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 python3.9-dbg amd64 3.9.2-1 [20.5 MB] Get:25 http://deb.debian.org/debian bullseye/main amd64 python3-dbg amd64 3.9.2-3 [1224 B] Get:26 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 python3-nose all 1.3.7-7 [133 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 python3-pairtools amd64 0.3.0-2+b2 [124 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 python3-pairtools-dbg amd64 0.3.0-2+b2 [732 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 50.4 MB in 1s (43.4 MB/s) Selecting previously unselected package libpython3.9-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6666 files and directories currently installed.) Preparing to unpack .../libpython3.9-minimal_3.9.2-1_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.2.10-2+deb11u5_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2+deb11u5) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../python3.9-minimal_3.9.2-1_amd64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:amd64 (3.9.2-1) ... Setting up libexpat1:amd64 (2.2.10-2+deb11u5) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6960 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_amd64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../2-libmpdec3_2.5.1-1_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-1) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../3-libncursesw6_6.2+20201114-2+deb11u2_amd64.deb ... Unpacking libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../5-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../6-libsqlite3-0_3.34.1-3_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.34.1-3) ... Selecting previously unselected package libpython3.9-stdlib:amd64. Preparing to unpack .../7-libpython3.9-stdlib_3.9.2-1_amd64.deb ... Unpacking libpython3.9-stdlib:amd64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../8-python3.9_3.9.2-1_amd64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.9.2-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... 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Selecting previously unselected package python3-pairtools. Preparing to unpack .../15-python3-pairtools_0.3.0-2+b2_amd64.deb ... Unpacking python3-pairtools (0.3.0-2+b2) ... Selecting previously unselected package python3-pairtools-dbg. Preparing to unpack .../16-python3-pairtools-dbg_0.3.0-2+b2_amd64.deb ... Unpacking python3-pairtools-dbg (0.3.0-2+b2) ... Setting up media-types (4.0.0) ... Setting up libsqlite3-0:amd64 (3.34.1-3) ... Setting up libblas3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libquadmath0:amd64 (10.2.1-6) ... Setting up libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up readline-common (8.1-1) ... Setting up liblapack3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libreadline8:amd64 (8.1-1) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up libpython3.9-dbg:amd64 (3.9.2-1) ... Setting up libpython3-dbg:amd64 (3.9.2-3) ... Setting up python3.9 (3.9.2-1) ... Setting up python3 (3.9.2-3) ... Setting up python3.9-dbg (3.9.2-1) ... Setting up cython3 (0.29.21-3+b1) ... Setting up python3-dbg (3.9.2-3) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-colorama (0.4.4-1) ... Setting up python3-click (7.1.2-1) ... Setting up python3-nose (1.3.7-7) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-pairtools (0.3.0-2+b2) ... Setting up python3-pairtools-dbg (0.3.0-2+b2) ... Processing triggers for libc-bin (2.31-13+deb11u6) ... 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'apt-get', '-y', 'install', 'python3-pairtools-dbg'] 0m20.7s INFO: Running scripts post_install 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_install_exceptions'] 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_install_exceptions'] 0m20.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbw6vw966'] 0m21.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbw6vw966'] 0m21.1s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpbw6vw966 to sid 0m21.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 0m21.1s INFO: Running scripts pre_distupgrade 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_distupgrade_exceptions'] 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_distupgrade_exceptions'] 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m21.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m21.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m21.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m21.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'apt-get', 'update'] 0m25.6s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9718 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7133 kB] Fetched 17.0 MB in 3s (5159 kB/s) Reading package lists... 0m25.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'apt-get', 'update'] 0m25.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'apt-get', '-yf', 'dist-upgrade'] 2m4.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: blt cython3 fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3 libbrotli1 libbsd0 libcurl3-gnutls libdeflate0 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b libhts3 libhtscodecs2 libicu72 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 libmpdec3 libncursesw6 libnghttp2-14 libopenjp2-7 libpng16-16 libpsl5 libpython3-dbg libpython3-stdlib libpython3.11-dbg libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libpython3.9-dbg libpython3.9-minimal libpython3.9-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsqlite3-0 libssh2-1 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 libyaml-0-2 media-types python-matplotlib-data python3 python3-appdirs python3-attr python3-bioframe python3-brotli python3-certifi python3-chardet python3-charset-normalizer python3-click python3-colorama python3-contourpy python3-cycler python3-dateutil python3-dbg python3-decorator python3-fonttools python3-fs python3-idna python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-nose python3-numpy python3-packaging python3-pairtools python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pkg-resources python3-pyparsing python3-pysam python3-requests python3-scipy python3-six python3-sympy python3-tk python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-yaml python3-zombie-imp python3.11 python3.11-dbg python3.11-minimal python3.12 python3.12-minimal python3.9 python3.9-dbg python3.9-minimal readline-common tk8.6-blt2.5 unicode-data x11-common Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libsemanage1 python3-pairtools-dbg The following NEW packages will be installed: blt ca-certificates fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx gcc-14-base libbrotli1 libbsd0 libcap2 libcurl3-gnutls libdeflate0 libffi8 libfile-find-rule-perl libfontconfig1 libfreetype6 libfribidi0 libgdbm-compat4 libgdbm6 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b libhts3 libhtscodecs2 libicu72 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 libmd0 libnghttp2-14 libnumber-compare-perl libopenjp2-7 libperl5.38 libpng16-16 libpsl5 libpython3.11-dbg libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libqhull-r8.0 libraqm0 librtmp1 libsasl2-2 libsasl2-modules-db libsemanage2 libsepol2 libsharpyuv0 libssh2-1 libssl3 libtcl8.6 libtext-glob-perl libtiff6 libtk8.6 libunistring5 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 libyaml-0-2 netbase openssl perl perl-modules-5.38 python-matplotlib-data python3-appdirs python3-attr python3-bioframe python3-brotli python3-certifi python3-chardet python3-charset-normalizer python3-contourpy python3-cycler python3-dateutil python3-decorator python3-fonttools python3-fs python3-idna python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pyparsing python3-pysam python3-requests python3-scipy python3-six python3-sympy python3-tk python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-yaml python3-zombie-imp python3.11 python3.11-dbg python3.11-minimal python3.12 python3.12-minimal tk8.6-blt2.5 unicode-data usrmerge x11-common The following packages will be upgraded: adduser apt base-files base-passwd bash bsdutils coreutils cython3 dash debconf debian-archive-keyring debianutils diffutils dpkg e2fsprogs findutils gcc-10-base gcc-9-base gpgv grep gzip hostname init-system-helpers libacl1 libapt-pkg6.0 libattr1 libaudit-common libaudit1 libblas3 libblkid1 libbz2-1.0 libc-bin libc6 libcap-ng0 libcom-err2 libcrypt1 libdb5.3 libdebconfclient0 libexpat1 libext2fs2 libgcc-s1 libgcrypt20 libgfortran5 libgmp10 libgnutls30 libgpg-error0 libgssapi-krb5-2 libhogweed6 libidn2-0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblz4-1 liblzma5 libmount1 libmpdec3 libncursesw6 libnettle8 libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpcre3 libpython3-dbg libpython3-stdlib libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtirpc-common libtirpc3 libudev1 libuuid1 libxxhash0 libzstd1 login logsave lsb-base mawk media-types mount ncurses-base ncurses-bin passwd perl-base python3 python3-click python3-colorama python3-dbg python3-minimal python3-nose python3-numpy python3-pairtools python3-pkg-resources readline-common sed sysvinit-utils tar tzdata util-linux zlib1g 114 upgraded, 128 newly installed, 2 to remove and 0 not upgraded. Need to get 219 MB of archives. After this operation, 720 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 base-files amd64 13 [70.6 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.37-15 [2750 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.37-15 [602 kB] Get:4 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14-20240201-3 [42.3 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14-20240201-3 [71.6 kB] Get:6 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.16 [88.9 kB] Get:7 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2.21-2 [1492 kB] Get:8 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.39.3-6 [96.9 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2 [557 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libssl3 amd64 3.1.5-1 [2063 kB] Get:11 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.4-3+b1 [2950 kB] Get:12 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.4.5-0.3 [240 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libmd0 amd64 1.1.0-2 [35.8 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.5+dfsg2-2 [295 kB] Get:15 http://deb.debian.org/debian sid/main amd64 tar amd64 1.35+dfsg-3 [813 kB] Get:16 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.22.4 [1509 kB] Get:17 http://deb.debian.org/debian sid/main amd64 dash amd64 0.5.12-6 [92.1 kB] Get:18 http://deb.debian.org/debian sid/main amd64 diffutils amd64 1:3.10-1 [375 kB] Get:19 http://deb.debian.org/debian sid/main amd64 findutils amd64 4.9.0-5 [636 kB] Get:20 http://deb.debian.org/debian sid/main amd64 grep amd64 3.11-4 [431 kB] Get:21 http://deb.debian.org/debian sid/main amd64 gzip amd64 1.12-1 [140 kB] Get:22 http://deb.debian.org/debian sid/main amd64 hostname amd64 3.23+nmu2 [10.6 kB] Get:23 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.13+dfsg1-3+b1 [616 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.4+20240113-1 [135 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.4+20240113-1 [342 kB] Get:26 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.4+20240113-1 [431 kB] Get:27 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.38.2-3 [1643 kB] Get:28 http://deb.debian.org/debian sid/main amd64 sed amd64 4.9-2 [329 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.39.3-6 [159 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.42-4 [261 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.5-2 [74.8 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.39.3-6 [190 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.39.3-6 [117 kB] Get:34 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.39.3-6 [1230 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.271 [9940 B] Get:36 http://deb.debian.org/debian sid/main amd64 base-passwd amd64 3.6.3 [50.8 kB] Get:37 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.47-3 [77.8 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.10.3-2 [708 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14-20240201-3 [714 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libbz2-1.0 amd64 1.0.8-5+b2 [38.2 kB] Get:41 http://deb.debian.org/debian sid/main amd64 liblz4-1 amd64 1.9.4-1+b2 [61.6 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.66-4+b2 [27.6 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 255.3-2 [362 kB] Get:44 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 255.3-2 [124 kB] Get:45 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.2-2 [26.4 kB] Get:46 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.3.dfsg-3+b1 [87.8 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0 amd64 2.7.10 [982 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libnettle8 amd64 3.9.1-2 [295 kB] Get:49 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.4-2 [23.5 kB] Get:50 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.3-4 [418 kB] Get:51 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.1-2 [421 kB] Get:52 http://deb.debian.org/debian sid/main amd64 libhogweed6 amd64 3.9.1-2 [327 kB] Get:53 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.7-2 [128 kB] Get:54 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.19.0-3+b2 [48.9 kB] Get:55 http://deb.debian.org/debian sid/main amd64 libgnutls30 amd64 3.8.3-1 [1425 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.5-1 [9908 B] Get:57 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.5-2 [277 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.5-1+b2 [90.3 kB] Get:59 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.13+dfsg1-3+b1 [973 kB] Get:60 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:3.1.2-2 [11.3 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.8.4-1 [16.9 kB] Get:62 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:3.1.2-2 [48.4 kB] Get:63 http://deb.debian.org/debian sid/main amd64 debconf all 1.5.85 [119 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.5.2-9.1+b1 [65.8 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.36-4 [89.8 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.5.2-9.1+b1 [50.1 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.5.2-9.1+b1 [265 kB] Get:68 http://deb.debian.org/debian sid/main amd64 adduser all 3.137 [140 kB] Get:69 http://deb.debian.org/debian sid/main amd64 gpgv amd64 2.2.40-1.1+b1 [649 kB] Get:70 http://deb.debian.org/debian sid/main amd64 debian-archive-keyring all 2023.4 [161 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.5.5-1 [47.0 kB] Get:72 http://deb.debian.org/debian sid/main amd64 apt amd64 2.7.10 [1363 kB] Get:73 http://deb.debian.org/debian sid/main amd64 perl-modules-5.38 all 5.38.2-3 [2899 kB] Get:74 http://deb.debian.org/debian sid/main amd64 libgdbm6 amd64 1.23-5 [72.5 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4 amd64 1.23-5 [48.3 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libdb5.3 amd64 5.3.28+dfsg2-4+b1 [697 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libperl5.38 amd64 5.38.2-3 [4275 kB] Get:78 http://deb.debian.org/debian sid/main amd64 perl amd64 5.38.2-3 [236 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:80 http://deb.debian.org/debian sid/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:81 http://deb.debian.org/debian sid/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get:82 http://deb.debian.org/debian sid/main amd64 usrmerge all 39 [13.1 kB] Get:83 http://deb.debian.org/debian sid/main amd64 init-system-helpers all 1.66 [39.0 kB] Get:84 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.4+20240113-1 [268 kB] Get:85 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.08-6 [32.1 kB] Get:86 http://deb.debian.org/debian sid/main amd64 lsb-base all 11.6 [4584 B] Get:87 http://deb.debian.org/debian sid/main amd64 logsave amd64 1.47.0-2+b1 [19.9 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libext2fs2 amd64 1.47.0-2+b1 [205 kB] Get:89 http://deb.debian.org/debian sid/main amd64 e2fsprogs amd64 1.47.0-2+b1 [572 kB] Get:90 http://deb.debian.org/debian sid/main amd64 mount amd64 2.39.3-6 [143 kB] Get:91 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.7-2 [816 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.5.0-2+b2 [99.4 kB] Get:93 http://deb.debian.org/debian sid/main amd64 python3.11-minimal amd64 3.11.7-2 [2035 kB] Get:94 http://deb.debian.org/debian sid/main amd64 python3-pairtools amd64 1.0.3-1 [232 kB] Get:95 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.24.2-2 [6299 kB] Get:96 http://deb.debian.org/debian sid/main amd64 libpython3-dbg amd64 3.11.6-1 [9464 B] Get:97 http://deb.debian.org/debian sid/main amd64 python3-dbg amd64 3.11.6-1 [1224 B] Get:98 http://deb.debian.org/debian sid/main amd64 cython3 amd64 3.0.8-1 [6641 kB] Get:99 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.11.6-1 [26.2 kB] Get:100 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.11.6-1 [26.2 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:102 http://deb.debian.org/debian sid/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:103 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:104 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:105 http://deb.debian.org/debian sid/main amd64 fonts-lyx all 2.4.0~RC1-2 [187 kB] Get:106 http://deb.debian.org/debian sid/main amd64 python-matplotlib-data all 3.6.3-1 [2744 kB] Get:107 http://deb.debian.org/debian sid/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:108 http://deb.debian.org/debian sid/main amd64 tzdata all 2024a-1 [255 kB] Get:109 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.8.2-3 [78.4 kB] Get:110 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:111 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:112 http://deb.debian.org/debian sid/main amd64 libpng16-16 amd64 1.6.42-1 [277 kB] Get:113 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b1 [439 kB] Get:114 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14-20240201-3 [136 kB] Get:115 http://deb.debian.org/debian sid/main amd64 libimagequant0 amd64 2.18.0-1 [35.0 kB] Get:116 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-2+b2 [167 kB] Get:117 http://deb.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get:118 http://deb.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.5.0-2+b2 [190 kB] Get:119 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get:120 http://deb.debian.org/debian sid/main amd64 libglib2.0-0 amd64 2.78.3-2 [1452 kB] Get:121 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get:122 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 8.3.0-2 [2213 kB] Get:123 http://deb.debian.org/debian sid/main amd64 libraqm0 amd64 0.10.1-1 [13.7 kB] Get:124 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.19-1 [41.4 kB] Get:125 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get:126 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-4 [170 kB] Get:127 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.3.2-0.3 [107 kB] Get:128 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.3.2-0.3 [308 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get:130 http://deb.debian.org/debian sid/main amd64 libwebpdemux2 amd64 1.3.2-0.3 [107 kB] Get:131 http://deb.debian.org/debian sid/main amd64 libwebpmux3 amd64 1.3.2-0.3 [120 kB] Get:132 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:133 http://deb.debian.org/debian sid/main amd64 libbsd0 amd64 0.11.8-1 [125 kB] Get:134 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:135 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:136 http://deb.debian.org/debian sid/main amd64 python3-pil amd64 10.2.0-1 [525 kB] Get:137 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [1035 kB] Get:138 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.14.2-6+b1 [316 kB] Get:139 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.14.2-6+b1 [388 kB] Get:140 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:141 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.7-1 [802 kB] Get:142 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:143 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB] Get:144 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:145 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+23 [252 kB] Get:146 http://deb.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:147 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.13-2 [781 kB] Get:148 http://deb.debian.org/debian sid/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get:149 http://deb.debian.org/debian sid/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get:150 http://deb.debian.org/debian sid/main amd64 python3-tk amd64 3.11.5-1 [108 kB] Get:151 http://deb.debian.org/debian sid/main amd64 python3-pil.imagetk amd64 10.2.0-1 [77.7 kB] Get:152 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.1.1-1 [145 kB] Get:153 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get:154 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:155 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1 [10.7 kB] Get:156 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-5 [135 kB] Get:157 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-5 [332 kB] Get:158 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-5 [79.6 kB] Get:159 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-5 [32.9 kB] Get:160 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.0-2+b1 [20.1 kB] Get:161 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-2+b2 [9140 B] Get:162 http://deb.debian.org/debian sid/main amd64 libtirpc3 amd64 1.3.4+ds-1 [82.1 kB] Get:163 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-3 [40.0 kB] Get:164 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-3 [69.1 kB] Get:165 http://deb.debian.org/debian sid/main amd64 libreadline8 amd64 8.2-3 [167 kB] Get:166 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.45.1-1 [894 kB] Get:167 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.39.3-6 [29.7 kB] Get:168 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.7-2 [1822 kB] Get:169 http://deb.debian.org/debian sid/main amd64 python3.11 amd64 3.11.7-2 [590 kB] Get:170 http://deb.debian.org/debian sid/main amd64 libpython3.12-minimal amd64 3.12.1-2 [807 kB] Get:171 http://deb.debian.org/debian sid/main amd64 python3.12-minimal amd64 3.12.1-2 [2185 kB] Get:172 http://deb.debian.org/debian sid/main amd64 libpython3.12-stdlib amd64 3.12.1-2 [1919 kB] Get:173 http://deb.debian.org/debian sid/main amd64 python3.12 amd64 3.12.1-2 [646 kB] Get:174 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.0-2 [148 kB] Get:175 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14-20240201-3 [836 kB] Get:176 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.0-2 [2407 kB] Get:177 http://deb.debian.org/debian sid/main amd64 python3-contourpy amd64 1.0.7-1+b2 [287 kB] Get:178 http://deb.debian.org/debian sid/main amd64 python3-cycler all 0.11.0-1 [8020 B] Get:179 http://deb.debian.org/debian sid/main amd64 python3-brotli amd64 1.1.0-2+b3 [312 kB] Get:180 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get:181 http://deb.debian.org/debian sid/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [28.9 kB] Get:182 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.10.1-10 [19.7 MB] Get:183 http://deb.debian.org/debian sid/main amd64 python3-attr all 23.2.0-1 [65.5 kB] Get:184 http://deb.debian.org/debian sid/main amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get:185 http://deb.debian.org/debian sid/main amd64 python3-mpmath all 1.2.1-2 [418 kB] Get:186 http://deb.debian.org/debian sid/main amd64 python3-sympy all 1.12-7 [3869 kB] Get:187 http://deb.debian.org/debian sid/main amd64 python3-tz all 2023.4-1 [30.8 kB] Get:188 http://deb.debian.org/debian sid/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get:189 http://deb.debian.org/debian sid/main amd64 python3-fs all 2.4.16-3 [95.3 kB] Get:190 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-4 [9396 kB] Get:191 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:192 http://deb.debian.org/debian sid/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get:193 http://deb.debian.org/debian sid/main amd64 python3-lxml amd64 5.1.0-1 [2092 kB] Get:194 http://deb.debian.org/debian sid/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b3 [25.5 kB] Get:195 http://deb.debian.org/debian sid/main amd64 python3-unicodedata2 amd64 15.1.0+ds-1+b1 [299 kB] Get:196 http://deb.debian.org/debian sid/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get:197 http://deb.debian.org/debian sid/main amd64 python3-fonttools amd64 4.46.0-1 [1623 kB] Get:198 http://deb.debian.org/debian sid/main amd64 python3-kiwisolver amd64 1.4.4-1+b2 [80.3 kB] Get:199 http://deb.debian.org/debian sid/main amd64 python3-packaging all 23.2-1 [44.8 kB] Get:200 http://deb.debian.org/debian sid/main amd64 libqhull-r8.0 amd64 2020.2-6 [244 kB] Get:201 http://deb.debian.org/debian sid/main amd64 python3-matplotlib amd64 3.6.3-1+b2 [8166 kB] Get:202 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 2.1.4+dfsg-3 [7884 kB] Get:203 http://deb.debian.org/debian sid/main amd64 python3-pandas all 2.1.4+dfsg-3 [3015 kB] Get:204 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.1.5-1 [1241 kB] Get:205 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:206 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2023.11.17-1 [155 kB] Get:207 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get:208 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.3-2 [39.1 kB] Get:209 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 1.26.18-2 [116 kB] Get:210 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:211 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get:212 http://deb.debian.org/debian sid/main amd64 python3-bioframe all 0.4.1-1 [71.6 kB] Get:213 http://deb.debian.org/debian sid/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get:214 http://deb.debian.org/debian sid/main amd64 python3-click all 8.1.6-1 [93.8 kB] Get:215 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-4+b1 [19.7 kB] Get:216 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-4+b1 [57.0 kB] Get:217 http://deb.debian.org/debian sid/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5+b3 [184 kB] Get:218 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.59.0-1 [74.3 kB] Get:219 http://deb.debian.org/debian sid/main amd64 libpsl5 amd64 0.21.2-1+b1 [59.1 kB] Get:220 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:221 http://deb.debian.org/debian sid/main amd64 libssh2-1 amd64 1.11.0-4 [215 kB] Get:222 http://deb.debian.org/debian sid/main amd64 libcurl3-gnutls amd64 8.6.0-1 [421 kB] Get:223 http://deb.debian.org/debian sid/main amd64 libhtscodecs2 amd64 1.6.0-1 [92.8 kB] Get:224 http://deb.debian.org/debian sid/main amd64 libhts3 amd64 1.18+ds-1 [441 kB] Get:225 http://deb.debian.org/debian sid/main amd64 python3-pysam amd64 0.22.0+ds-1+b1 [4110 kB] Get:226 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:227 http://deb.debian.org/debian sid/main amd64 python3-yaml amd64 6.0.1-2 [177 kB] Get:228 http://deb.debian.org/debian sid/main amd64 libpython3.11-dbg amd64 3.11.7-2 [16.8 MB] Get:229 http://deb.debian.org/debian sid/main amd64 python3.11-dbg amd64 3.11.7-2 [36.7 MB] Get:230 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.11.6-1 [9224 B] Get:231 http://deb.debian.org/debian sid/main amd64 libpam-runtime all 1.5.2-9.1 [134 kB] Get:232 http://deb.debian.org/debian sid/main amd64 libacl1 amd64 2.3.2-1 [32.4 kB] Get:233 http://deb.debian.org/debian sid/main amd64 libattr1 amd64 1:2.5.2-1 [22.5 kB] Get:234 http://deb.debian.org/debian sid/main amd64 libpcre3 amd64 2:8.39-15 [341 kB] Get:235 http://deb.debian.org/debian sid/main amd64 mawk amd64 1.3.4.20240123-1 [136 kB] Get:236 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 14-20240201-3 [147 kB] Get:237 http://deb.debian.org/debian sid/main amd64 gcc-10-base amd64 10.5.0-3 [36.6 kB] Get:238 http://deb.debian.org/debian sid/main amd64 gcc-9-base amd64 9.5.0-5 [28.8 kB] Get:239 http://deb.debian.org/debian sid/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:240 http://deb.debian.org/debian sid/main amd64 libss2 amd64 1.47.0-2+b1 [24.8 kB] Get:241 http://deb.debian.org/debian sid/main amd64 python3-zombie-imp all 0.0.2-2 [11.7 kB] Get:242 http://deb.debian.org/debian sid/main amd64 python3-nose all 1.3.7-12 [130 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 219 MB in 2s (89.6 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8767 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-6_amd64.deb ... Unpacking dash (0.5.12-6) over (0.5.11+git20200708+dd9ef66-5) ... Setting up dash (0.5.12-6) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8768 files and directories currently installed.) Preparing to unpack .../findutils_4.9.0-5_amd64.deb ... Unpacking findutils (4.9.0-5) over (4.8.0-1) ... Setting up findutils (4.9.0-5) ... (Reading database ... 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Unpacking util-linux (2.39.3-6) over (2.36.1-8+deb11u1) ... dpkg: warning: unable to delete old directory '/usr/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/usr/lib/udev': Directory not empty dpkg: warning: unable to delete old directory '/etc/init.d': Directory not empty Setting up util-linux (2.39.3-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8786 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.271_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.271) over (0.260) ... Setting up libdebconfclient0:amd64 (0.271) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8786 files and directories currently installed.) Preparing to unpack .../base-passwd_3.6.3_amd64.deb ... Unpacking base-passwd (3.6.3) over (3.5.51) ... Setting up base-passwd (3.6.3) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8801 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.2-2_amd64.deb ... Unpacking libxxhash0:amd64 (0.8.2-2) over (0.8.0-2) ... Setting up libxxhash0:amd64 (0.8.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8801 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3+b1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.3.dfsg-3+b1) over (1:1.2.11.dfsg-2+deb11u2) ... Setting up zlib1g:amd64 (1:1.3.dfsg-3+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8802 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.7.10_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.7.10) over (2.2.4) ... Setting up libapt-pkg6.0:amd64 (2.7.10) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8802 files and directories currently installed.) Preparing to unpack .../libnettle8_3.9.1-2_amd64.deb ... Unpacking libnettle8:amd64 (3.9.1-2) over (3.7.3-1) ... Setting up libnettle8:amd64 (3.9.1-2) ... Selecting previously unselected package libffi8:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8802 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.4-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.4-2) ... Setting up libffi8:amd64 (3.4.4-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8807 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.25.3-4_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.3-4) over (0.23.22-1) ... Setting up libp11-kit0:amd64 (0.25.3-4) ... Selecting previously unselected package libunistring5:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8807 files and directories currently installed.) Preparing to unpack .../libunistring5_1.1-2_amd64.deb ... Unpacking libunistring5:amd64 (1.1-2) ... Setting up libunistring5:amd64 (1.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8813 files and directories currently installed.) Preparing to unpack .../libhogweed6_3.9.1-2_amd64.deb ... Unpacking libhogweed6:amd64 (3.9.1-2) over (3.7.3-1) ... Setting up libhogweed6:amd64 (3.9.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8813 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.7-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.7-2) over (2.3.0-5) ... Setting up libidn2-0:amd64 (2.3.7-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8815 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.19.0-3+b2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.19.0-3+b2) over (4.16.0-2+deb11u1) ... Setting up libtasn1-6:amd64 (4.19.0-3+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8816 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.8.3-1_amd64.deb ... Unpacking libgnutls30:amd64 (3.8.3-1) over (3.7.1-5+deb11u3) ... Setting up libgnutls30:amd64 (3.8.3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8817 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.5-1_all.deb ... Unpacking libsemanage-common (3.5-1) over (3.1-1) ... Setting up libsemanage-common (3.5-1) ... Installing new version of config file /etc/selinux/semanage.conf ... Selecting previously unselected package libsepol2:amd64. (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8821 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.5-1+b2_amd64.deb ... Unpacking libsemanage2:amd64 (3.5-1+b2) ... Setting up libsemanage2:amd64 (3.5-1+b2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8855 files and directories currently installed.) Preparing to unpack .../libcrypt1_1%3a4.4.36-4_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.36-4) over (1:4.4.18-4) ... Setting up libcrypt1:amd64 (1:4.4.36-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8855 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.2-9.1+b1_amd64.deb ... Unpacking libpam-modules-bin (1.5.2-9.1+b1) over (1.4.0-9+deb11u1) ... Replacing files in old package libpam-modules:amd64 (1.4.0-9+deb11u1) ... Setting up libpam-modules-bin (1.5.2-9.1+b1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8824 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2023.4_all.deb ... Unpacking debian-archive-keyring (2023.4) over (2021.1.1+deb11u1) ... Setting up debian-archive-keyring (2023.4) ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-automatic.gpg ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8824 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.5-1_amd64.deb ... Unpacking libseccomp2:amd64 (2.5.5-1) over (2.5.1-1+deb11u1) ... Setting up libseccomp2:amd64 (2.5.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8824 files and directories currently installed.) Preparing to unpack .../archives/apt_2.7.10_amd64.deb ... Unpacking apt (2.7.10) over (2.2.4) ... Setting up apt (2.7.10) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt-compat ... Removing obsolete conffile /etc/kernel/postinst.d/apt-auto-removal ... Selecting previously unselected package perl-modules-5.38. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8817 files and directories currently installed.) Preparing to unpack .../perl-modules-5.38_5.38.2-3_all.deb ... Unpacking perl-modules-5.38 (5.38.2-3) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../libgdbm6_1.23-5_amd64.deb ... Unpacking libgdbm6:amd64 (1.23-5) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../libgdbm-compat4_1.23-5_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.23-5) ... Preparing to unpack .../libdb5.3_5.3.28+dfsg2-4+b1_amd64.deb ... Unpacking libdb5.3:amd64 (5.3.28+dfsg2-4+b1) over (5.3.28+dfsg1-0.8) ... Setting up libdb5.3:amd64 (5.3.28+dfsg2-4+b1) ... Selecting previously unselected package libperl5.38:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10244 files and directories currently installed.) Preparing to unpack .../libperl5.38_5.38.2-3_amd64.deb ... Unpacking libperl5.38:amd64 (5.38.2-3) ... Selecting previously unselected package perl. Preparing to unpack .../perl_5.38.2-3_amd64.deb ... Unpacking perl (5.38.2-3) ... Selecting previously unselected package libnumber-compare-perl. Preparing to unpack .../libnumber-compare-perl_0.03-3_all.deb ... Unpacking libnumber-compare-perl (0.03-3) ... Setting up libnumber-compare-perl (0.03-3) ... Selecting previously unselected package libtext-glob-perl. (Reading database ... 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Selecting previously unselected package usrmerge. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10859 files and directories currently installed.) Preparing to unpack .../archives/usrmerge_39_all.deb ... Unpacking usrmerge (39) ... Setting up usrmerge (39) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10866 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.4+20240113-1_all.deb ... Unpacking ncurses-base (6.4+20240113-1) over (6.2+20201114-2+deb11u2) ... Setting up ncurses-base (6.4+20240113-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10866 files and directories currently installed.) Preparing to unpack .../archives/lsb-base_11.6_all.deb ... Unpacking lsb-base (11.6) over (11.1.0) ... Preparing to unpack .../sysvinit-utils_3.08-6_amd64.deb ... Unpacking sysvinit-utils (3.08-6) over (2.96-7+deb11u1) ... Setting up sysvinit-utils (3.08-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10865 files and directories currently installed.) Removing python3-pairtools-dbg (0.3.0-2+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10861 files and directories currently installed.) Preparing to unpack .../logsave_1.47.0-2+b1_amd64.deb ... Unpacking logsave (1.47.0-2+b1) over (1.46.2-2) ... Preparing to unpack .../libext2fs2_1.47.0-2+b1_amd64.deb ... Unpacking libext2fs2:amd64 (1.47.0-2+b1) over (1.46.2-2) ... Setting up libext2fs2:amd64 (1.47.0-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10863 files and directories currently installed.) Preparing to unpack .../0-e2fsprogs_1.47.0-2+b1_amd64.deb ... Unpacking e2fsprogs (1.47.0-2+b1) over (1.46.2-2) ... Preparing to unpack .../1-mount_2.39.3-6_amd64.deb ... Unpacking mount (2.39.3-6) over (2.36.1-8+deb11u1) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../2-libpython3.11-minimal_3.11.7-2_amd64.deb ... 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Setting up libpython3.11-minimal:amd64 (3.11.7-2) ... Setting up libexpat1:amd64 (2.5.0-2+b2) ... Setting up python3.11-minimal (3.11.7-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11776 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.11.6-1_amd64.deb ... Unpacking python3-minimal (3.11.6-1) over (3.9.2-3) ... Setting up python3-minimal (3.11.6-1) ... (Reading database ... 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Selecting previously unselected package libhtscodecs2:amd64. Preparing to unpack .../55-libhtscodecs2_1.6.0-1_amd64.deb ... Unpacking libhtscodecs2:amd64 (1.6.0-1) ... Selecting previously unselected package libhts3:amd64. Preparing to unpack .../56-libhts3_1.18+ds-1_amd64.deb ... Unpacking libhts3:amd64 (1.18+ds-1) ... Selecting previously unselected package python3-pysam. Preparing to unpack .../57-python3-pysam_0.22.0+ds-1+b1_amd64.deb ... Unpacking python3-pysam (0.22.0+ds-1+b1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../58-libyaml-0-2_0.2.5-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.5-1) ... Selecting previously unselected package python3-yaml. Preparing to unpack .../59-python3-yaml_6.0.1-2_amd64.deb ... Unpacking python3-yaml (6.0.1-2) ... Selecting previously unselected package libpython3.11-dbg:amd64. Preparing to unpack .../60-libpython3.11-dbg_3.11.7-2_amd64.deb ... Unpacking libpython3.11-dbg:amd64 (3.11.7-2) ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21315 files and directories currently installed.) Preparing to unpack .../libattr1_1%3a2.5.2-1_amd64.deb ... Unpacking libattr1:amd64 (1:2.5.2-1) over (1:2.4.48-6) ... Setting up libattr1:amd64 (1:2.5.2-1) ... Installing new version of config file /etc/xattr.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21316 files and directories currently installed.) Preparing to unpack .../libpcre3_2%3a8.39-15_amd64.deb ... Unpacking libpcre3:amd64 (2:8.39-15) over (2:8.39-13) ... Setting up libpcre3:amd64 (2:8.39-15) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21316 files and directories currently installed.) Preparing to unpack .../0-mawk_1.3.4.20240123-1_amd64.deb ... Unpacking mawk (1.3.4.20240123-1) over (1.3.4.20200120-2) ... Preparing to unpack .../1-libquadmath0_14-20240201-3_amd64.deb ... Unpacking libquadmath0:amd64 (14-20240201-3) over (10.2.1-6) ... Preparing to unpack .../2-gcc-10-base_10.5.0-3_amd64.deb ... Unpacking gcc-10-base:amd64 (10.5.0-3) over (10.2.1-6) ... 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Setting up libkeyutils1:amd64 (1.6.3-2+b2) ... Setting up libpsl5:amd64 (0.21.2-1+b1) ... Setting up libicu72:amd64 (72.1-4) ... Setting up liblerc4:amd64 (4.0.0+ds-4) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libglib2.0-0:amd64 (2.78.3-2) ... No schema files found: doing nothing. Setting up libtirpc-common (1.3.4+ds-1) ... Setting up fonts-lyx (2.4.0~RC1-2) ... Setting up libbrotli1:amd64 (1.1.0-2+b3) ... Setting up libsqlite3-0:amd64 (3.45.1-1) ... Setting up libpython3.12-minimal:amd64 (3.12.1-2) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of restart. Setting up libnghttp2-14:amd64 (1.59.0-1) ... Setting up libdeflate0:amd64 (1.19-1) ... Setting up libqhull-r8.0:amd64 (2020.2-6) ... Setting up libcom-err2:amd64 (1.47.0-2+b1) ... Setting up libgomp1:amd64 (14-20240201-3) ... Setting up libjbig0:amd64 (2.1-6.1) ... Setting up libkrb5support0:amd64 (1.20.1-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-4+b1) ... Setting up tzdata (2024a-1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Feb 5 03:42:49 UTC 2024. Universal Time is now: Mon Feb 5 03:42:49 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up gcc-10-base:amd64 (10.5.0-3) ... Setting up libblas3:amd64 (3.12.0-2) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-2+b2) ... Setting up libx11-data (2:1.8.7-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libfribidi0:amd64 (1.0.13-3+b1) ... Setting up libquadmath0:amd64 (14-20240201-3) ... Setting up libimagequant0:amd64 (2.18.0-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16:amd64 (1.6.42-1) ... Setting up libss2:amd64 (1.47.0-2+b1) ... Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libncursesw6:amd64 (6.4+20240113-1) ... Setting up libk5crypto3:amd64 (1.20.1-5) ... Setting up logsave (1.47.0-2+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-4+b1) ... Setting up libgfortran5:amd64 (14-20240201-3) ... Setting up libwebp7:amd64 (1.3.2-0.3) ... Setting up mount (2.39.3-6) ... Setting up libtiff6:amd64 (4.5.1+git230720-4) ... Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up libopenjp2-7:amd64 (2.5.0-2+b2) ... Setting up libssh2-1:amd64 (1.11.0-4) ... Setting up netbase (6.4) ... Setting up mawk (1.3.4.20240123-1) ... Setting up libkrb5-3:amd64 (1.20.1-5) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.6.3-1) ... Setting up openssl (3.1.5-1) ... Setting up libwebpmux3:amd64 (1.3.2-0.3) ... Setting up libbsd0:amd64 (0.11.8-1) ... Setting up readline-common (8.2-3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Setting up gcc-9-base:amd64 (9.5.0-5) ... Setting up python3.12-minimal (3.12.1-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.12.0-2) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up fontconfig-config (2.14.2-6+b1) ... Setting up libwebpdemux2:amd64 (1.3.2-0.3) ... Setting up libreadline8:amd64 (8.2-3) ... Setting up e2fsprogs (1.47.0-2+b1) ... Installing new version of config file /etc/mke2fs.conf ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5+b3) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b1) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-5) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up libx11-6:amd64 (2:1.8.7-1) ... Setting up libharfbuzz0b:amd64 (8.3.0-2) ... Setting up libfontconfig1:amd64 (2.14.2-6+b1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Setting up libtirpc3:amd64 (1.3.4+ds-1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:amd64 (8.6.0-1) ... Setting up libraqm0:amd64 (0.10.1-1) ... Setting up libnsl2:amd64 (1.3.0-3) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libxft2:amd64 (2.3.6-1) ... Setting up libhts3:amd64 (1.18+ds-1) ... Setting up libpython3.12-stdlib:amd64 (3.12.1-2) ... Setting up libpython3.11-stdlib:amd64 (3.11.7-2) ... Setting up libtk8.6:amd64 (8.6.13-2) ... Setting up python3.12 (3.12.1-2) ... Setting up libpython3.11-dbg:amd64 (3.11.7-2) ... Setting up libpython3-stdlib:amd64 (3.11.6-1) ... Setting up python3.11 (3.11.7-2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up blt (2.5.3+dfsg-7) ... Setting up libpython3-dbg:amd64 (3.11.6-1) ... Setting up python3 (3.11.6-1) ... Setting up python3-tz (2023.4-1) ... Setting up python3-six (1.16.0-4) ... Setting up python3-pil:amd64 (10.2.0-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (23.2-1) ... Setting up python3-pyparsing (3.1.1-1) ... Setting up python3-certifi (2023.11.17-1) ... Setting up python3-brotli (1.1.0-2+b3) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3.11-dbg (3.11.7-2) ... Setting up python3-kiwisolver (1.4.4-1+b2) ... Setting up python3-idna (3.3-2) ... Setting up cython3 (3.0.8-1) ... Setting up python3-urllib3 (1.26.18-2) ... Setting up python3-lxml:amd64 (5.1.0-1) ... Setting up python3-dateutil (2.8.2-3) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-dbg (3.11.6-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-sympy (1.12-7) ... Setting up python3-attr (23.2.0-1) ... Setting up python3-zombie-imp (0.0.2-2) ... Setting up python3-pysam (0.22.0+ds-1+b1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-lz4 (4.0.2+dfsg-1+b3) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-unicodedata2 (15.1.0+ds-1+b1) ... Setting up python3-yaml (6.0.1-2) ... Setting up python3-tk:amd64 (3.11.5-1) ... Setting up python3-click (8.1.6-1) ... Setting up python3-nose (1.3.7-12) ... /usr/lib/python3/dist-packages/nose/config.py:142: SyntaxWarning: invalid escape sequence '\.' """nose configuration. /usr/lib/python3/dist-packages/nose/ext/dtcompat.py:686: SyntaxWarning: invalid escape sequence '\S' _INDENT_RE = re.compile('^([ ]*)(?=\S)', re.MULTILINE) /usr/lib/python3/dist-packages/nose/ext/dtcompat.py:1021: SyntaxWarning: invalid escape sequence '\s' pat = re.compile('(^|.*:)\s*\w*("|\')') /usr/lib/python3/dist-packages/nose/ext/dtcompat.py:1430: SyntaxWarning: invalid escape sequence '\s' want = re.sub('(?m)^%s\s*?$' % re.escape(BLANKLINE_MARKER), /usr/lib/python3/dist-packages/nose/ext/dtcompat.py:1434: SyntaxWarning: invalid escape sequence '\s' got = re.sub('(?m)^\s*?$', '', got) /usr/lib/python3/dist-packages/nose/inspector.py:110: SyntaxWarning: invalid escape sequence '\ ' """Find lines in home that are inspectable. Setting up python3-fs (2.4.16-3) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-pil.imagetk:amd64 (10.2.0-1) ... Setting up python3-requests (2.31.0+dfsg-1) ... Setting up python3-numpy (1:1.24.2-2) ... Setting up python3-contourpy (1.0.7-1+b2) ... Setting up python3-scipy (1.10.1-10) ... Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-3) ... Setting up python3-pandas (2.1.4+dfsg-3) ... Setting up python3-fonttools (4.46.0-1) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-matplotlib (3.6.3-1+b2) ... Setting up python3-bioframe (0.4.1-1) ... Setting up python3-pairtools (1.0.3-1) ... /usr/lib/python3/dist-packages/pairtools/cli/select.py:90: SyntaxWarning: invalid escape sequence '\d' """Select pairs according to some condition. /usr/lib/python3/dist-packages/pairtools/lib/stats.py:928: SyntaxWarning: invalid escape sequence '\w' """Extract the name of the tile for each read name in the series Processing triggers for libc-bin (2.37-15) ... Processing triggers for debianutils (5.16) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 2m4.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'apt-get', '-yf', 'dist-upgrade'] 2m4.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m5.8s DUMP: f73f87a50f3cf9300aae9ce6d79dadea - 2m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 2m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'apt-cache', 'show', '--no-all-versions', 'python3-pairtools-dbg'] 2m6.0s DUMP: E: No packages found 2m6.0s DEBUG: Command failed (status=100), but ignoring error: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'apt-cache', 'show', '--no-all-versions', 'python3-pairtools-dbg'] 2m6.0s INFO: apt-cache does not know about any of the requested packages 2m6.0s INFO: Running scripts post_distupgrade 2m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_distupgrade_base_cleanup'] 2m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_distupgrade_exceptions'] 2m6.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_distupgrade_exceptions'] 2m6.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 2m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_distupgrade_squeeze-backports'] 2m6.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_distupgrade_zz_backports'] 2m6.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_distupgrade_zz_backports'] 2m6.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbw6vw966'] 2m7.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbw6vw966'] 2m7.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbw6vw966'] 2m8.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbw6vw966'] 2m8.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbw6vw966'] 2m9.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbw6vw966'] 2m9.7s INFO: /bin converted to /usr/bin by /usr merge 2m9.7s INFO: /lib converted to /usr/lib by /usr merge 2m9.7s INFO: /lib/init converted to /usr/lib/init by /usr merge 2m9.7s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 2m9.7s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 2m9.7s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 2m9.7s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 2m9.7s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 2m9.7s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 2m9.7s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 2m9.7s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 2m9.7s INFO: /lib64 converted to /usr/lib64 by /usr merge 2m9.7s INFO: /sbin converted to /usr/sbin by /usr merge 2m11.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', '-ac', '--ignore-obsolete'] 2m15.0s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', '-ac', '--ignore-obsolete'] 2m15.0s INFO: Running scripts pre_remove 2m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m15.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 2m15.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m15.1s DUMP: dpkg-query: no packages found matching python3-pairtools-dbg 2m15.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 2m15.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m19.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 2m19.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 2m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m19.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 2m19.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_remove_exceptions'] 2m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/pre_remove_exceptions'] 2m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m19.6s DUMP: install ok installed adduser adduser 3.137 install ok installed apt apt 2.7.10 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed blt blt 2.5.3+dfsg-7 install ok installed bsdutils bsdutils 1:2.39.3-6 install ok installed ca-certificates ca-certificates 20240203 install ok installed coreutils coreutils 9.4-3+b1 install ok installed cython3 cython3 3.0.8-1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.85 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.16 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.4 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed fontconfig-config fontconfig-config 2.14.2-6+b1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-lyx fonts-lyx 2.4.0~RC1-2 install ok installed gcc-10-base:amd64 gcc-10-base 10.5.0-3 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240201-3 install ok installed gcc-9-base:amd64 gcc-9-base 9.5.0-5 install ok installed gpgv gpgv 2.2.40-1.1+b1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.10 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2 install ok installed libblas3:amd64 libblas3 3.12.0-2 install ok installed libblkid1:amd64 libblkid1 2.39.3-6 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b3 install ok installed libbsd0:amd64 libbsd0 0.11.8-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b2 install ok installed libc-bin libc-bin 2.37-15 install ok installed libc6:amd64 libc6 2.37-15 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-1 install ok installed libcap2:amd64 libcap2 1:2.66-4+b2 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libcurl3-gnutls:amd64 libcurl3-gnutls 8.6.0-1 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-4+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271 install ok installed libdeflate0:amd64 libdeflate0 1.19-1 install ok installed libexpat1:amd64 libexpat1 2.5.0-2+b2 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libffi8:amd64 libffi8 3.4.4-2 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libfontconfig1:amd64 libfontconfig1 2.14.2-6+b1 install ok installed libfreetype6:amd64 libfreetype6 2.13.2+dfsg-1+b1 install ok installed libfribidi0:amd64 libfribidi0 1.0.13-3+b1 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240201-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-5 install ok installed libgdbm6:amd64 libgdbm6 1.23-5 install ok installed libgfortran5:amd64 libgfortran5 14-20240201-3 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.78.3-2 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2 install ok installed libgnutls30:amd64 libgnutls30 3.8.3-1 install ok installed libgomp1:amd64 libgomp1 14-20240201-3 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-5 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 8.3.0-2 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2 install ok installed libhts3:amd64 libhts3 1.18+ds-1 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.6.0-1 install ok installed libicu72:amd64 libicu72 72.1-4 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libimagequant0:amd64 libimagequant0 2.18.0-1 install ok installed libjbig0:amd64 libjbig0 2.1-6.1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-2+b2 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-5 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-2+b2 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-5 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-5 install ok installed liblapack3:amd64 liblapack3 3.12.0-2 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1 install ok installed liblcms2-2:amd64 liblcms2-2 2.14-2 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-5+b3 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-4 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzma5:amd64 liblzma5 5.4.5-0.3 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.39.3-6 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-2 install ok installed libncursesw6:amd64 libncursesw6 6.4+20240113-1 install ok installed libnettle8:amd64 libnettle8 3.9.1-2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.59.0-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-3 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2+b2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1+b1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4 install ok installed libpcre3:amd64 libpcre3 2:8.39-15 install ok installed libperl5.38:amd64 libperl5.38 5.38.2-3 install ok installed libpng16-16:amd64 libpng16-16 1.6.42-1 install ok installed libpsl5:amd64 libpsl5 0.21.2-1+b1 install ok installed libpython3-dbg:amd64 libpython3-dbg 3.11.6-1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.6-1 install ok installed libpython3.11-dbg:amd64 libpython3.11-dbg 3.11.7-2 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.7-2 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.7-2 install ok installed libpython3.12-minimal:amd64 libpython3.12-minimal 3.12.1-2 install ok installed libpython3.12-stdlib:amd64 libpython3.12-stdlib 3.12.1-2 install ok installed libpython3.9-dbg:amd64 libpython3.9-dbg 3.9.2-1 install ok installed libpython3.9-minimal:amd64 libpython3.9-minimal 3.9.2-1 install ok installed libpython3.9-stdlib:amd64 libpython3.9-stdlib 3.9.2-1 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-6 install ok installed libquadmath0:amd64 libquadmath0 14-20240201-3 install ok installed libraqm0:amd64 libraqm0 0.10.1-1 install ok installed libreadline8:amd64 libreadline8 8.2-3 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-4+b1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.3.2-0.3 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-6 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.45.1-1 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssh2-1:amd64 libssh2-1 1.11.0-4 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libssl3:amd64 libssl3 3.1.5-1 install ok installed libstdc++6:amd64 libstdc++6 14-20240201-3 install ok installed libsystemd0:amd64 libsystemd0 255.3-2 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.13+dfsg-2 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libtiff6:amd64 libtiff6 4.5.1+git230720-4 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.4+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.13-2 install ok installed libudev1:amd64 libudev1 255.3-2 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.3-6 install ok installed libwebp7:amd64 libwebp7 1.3.2-0.3 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.3.2-0.3 install ok installed libwebpmux3:amd64 libwebpmux3 1.3.2-0.3 install ok installed libx11-6:amd64 libx11-6 2:1.8.7-1 install ok installed libx11-data libx11-data 2:1.8.7-1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxft2:amd64 libxft2 2.3.6-1 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3+b2 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed login login 1:4.13+dfsg1-3+b1 install ok installed logsave logsave 1.47.0-2+b1 install ok installed lsb-base lsb-base 11.6 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed media-types media-types 10.1.0 install ok installed mount mount 2.39.3-6 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed netbase netbase 6.4 install ok installed openssl openssl 3.1.5-1 install ok installed passwd passwd 1:4.13+dfsg1-3+b1 install ok installed perl perl 5.38.2-3 install ok installed perl-base perl-base 5.38.2-3 install ok installed perl-modules-5.38 perl-modules-5.38 5.38.2-3 install ok installed python-matplotlib-data python-matplotlib-data 3.6.3-1 install ok installed python3 python3 3.11.6-1 install ok installed python3-appdirs python3-appdirs 1.4.4-4 install ok installed python3-attr python3-attr 23.2.0-1 install ok installed python3-bioframe python3-bioframe 0.4.1-1 install ok installed python3-brotli python3-brotli 1.1.0-2+b3 install ok installed python3-certifi python3-certifi 2023.11.17-1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-1 install ok installed python3-charset-normalizer python3-charset-normalizer 3.3.2-1 install ok installed python3-click python3-click 8.1.6-1 install ok installed python3-colorama python3-colorama 0.4.6-4 install ok installed python3-contourpy python3-contourpy 1.0.7-1+b2 install ok installed python3-cycler python3-cycler 0.11.0-1 install ok installed python3-dateutil python3-dateutil 2.8.2-3 install ok installed python3-dbg python3-dbg 3.11.6-1 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-fonttools python3-fonttools 4.46.0-1 install ok installed python3-fs python3-fs 2.4.16-3 install ok installed python3-idna python3-idna 3.3-2 install ok installed python3-kiwisolver python3-kiwisolver 1.4.4-1+b2 install ok installed python3-lxml:amd64 python3-lxml 5.1.0-1 install ok installed python3-lz4 python3-lz4 4.0.2+dfsg-1+b3 install ok installed python3-matplotlib python3-matplotlib 3.6.3-1+b2 install ok installed python3-minimal python3-minimal 3.11.6-1 install ok installed python3-mpmath python3-mpmath 1.2.1-2 install ok installed python3-nose python3-nose 1.3.7-12 install ok installed python3-numpy python3-numpy 1:1.24.2-2 install ok installed python3-packaging python3-packaging 23.2-1 install ok installed python3-pairtools python3-pairtools 1.0.3-1 install ok installed python3-pandas python3-pandas 2.1.4+dfsg-3 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.1.4+dfsg-3 install ok installed python3-pil:amd64 python3-pil 10.2.0-1 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 10.2.0-1 install ok installed python3-pkg-resources python3-pkg-resources 68.1.2-2 install ok installed python3-pyparsing python3-pyparsing 3.1.1-1 install ok installed python3-pysam python3-pysam 0.22.0+ds-1+b1 install ok installed python3-requests python3-requests 2.31.0+dfsg-1 install ok installed python3-scipy python3-scipy 1.10.1-10 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-sympy python3-sympy 1.12-7 install ok installed python3-tk:amd64 python3-tk 3.11.5-1 install ok installed python3-tz python3-tz 2023.4-1 install ok installed python3-ufolib2 python3-ufolib2 0.16.0+dfsg1-1 install ok installed python3-unicodedata2 python3-unicodedata2 15.1.0+ds-1+b1 install ok installed python3-urllib3 python3-urllib3 1.26.18-2 install ok installed python3-yaml python3-yaml 6.0.1-2 install ok installed python3-zombie-imp python3-zombie-imp 0.0.2-2 install ok installed python3.11 python3.11 3.11.7-2 install ok installed python3.11-dbg python3.11-dbg 3.11.7-2 install ok installed python3.11-minimal python3.11-minimal 3.11.7-2 install ok installed python3.12 python3.12 3.12.1-2 install ok installed python3.12-minimal python3.12-minimal 3.12.1-2 install ok installed python3.9 python3.9 3.9.2-1 install ok installed python3.9-dbg python3.9-dbg 3.9.2-1 install ok installed python3.9-minimal python3.9-minimal 3.9.2-1 install ok installed readline-common readline-common 8.2-3 install ok installed sed sed 4.9-2 install ok installed sysvinit-utils sysvinit-utils 3.08-6 install ok installed tar tar 1.35+dfsg-3 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-7 install ok installed tzdata tzdata 2024a-1 install ok installed unicode-data unicode-data 15.1.0-1 install ok installed usrmerge usrmerge 39 install ok installed util-linux util-linux 2.39.3-6 install ok installed x11-common x11-common 1:7.7+23 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3+b1 2m19.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 2m19.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'apt-get', 'remove', 'blt', 'ca-certificates', 'cython3', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-lyx', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-dbg:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-dbg:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.9-dbg:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtk8.6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'openssl', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-bioframe', 'python3-brotli', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-dbg', 'python3-decorator', 'python3-fonttools', 'python3-fs', 'python3-idna', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-nose', 'python3-numpy', 'python3-packaging', 'python3-pairtools', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pyparsing', 'python3-pysam', 'python3-requests', 'python3-scipy', 'python3-six', 'python3-sympy', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-yaml', 'python3-zombie-imp', 'python3.11', 'python3.11-dbg', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'python3.9', 'python3.9-dbg', 'python3.9-minimal', 'readline-common', 'tk8.6-blt2.5', 'unicode-data', 'x11-common'] 2m30.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: blt ca-certificates cython3 fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3 libbrotli1 libbsd0 libcurl3-gnutls libdeflate0 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b libhts3 libhtscodecs2 libicu72 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 libmpdec3 libncursesw6 libnghttp2-14 libopenjp2-7 libpng16-16 libpsl5 libpython3-dbg libpython3-stdlib libpython3.11-dbg libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libpython3.9-dbg libpython3.9-minimal libpython3.9-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsqlite3-0 libssh2-1 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 libyaml-0-2 media-types netbase openssl python-matplotlib-data python3 python3-appdirs python3-attr python3-bioframe python3-brotli python3-certifi python3-chardet python3-charset-normalizer python3-click python3-colorama python3-contourpy python3-cycler python3-dateutil python3-dbg python3-decorator python3-fonttools python3-fs python3-idna python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-nose python3-numpy python3-packaging python3-pairtools python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pkg-resources python3-pyparsing python3-pysam python3-requests python3-scipy python3-six python3-sympy python3-tk python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-yaml python3-zombie-imp python3.11 python3.11-dbg python3.11-minimal python3.12 python3.12-minimal python3.9 python3.9-dbg python3.9-minimal readline-common tk8.6-blt2.5 unicode-data x11-common 0 upgraded, 0 newly installed, 140 to remove and 0 not upgraded. After this operation, 841 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21333 files and directories currently installed.) Removing python3-pairtools (1.0.3-1) ... Removing python3-bioframe (0.4.1-1) ... Removing python3-matplotlib (3.6.3-1+b2) ... Removing python3-pil.imagetk:amd64 (10.2.0-1) ... Removing python3-pil:amd64 (10.2.0-1) ... Removing python3-tk:amd64 (3.11.5-1) ... Removing blt (2.5.3+dfsg-7) ... Removing python3-requests (2.31.0+dfsg-1) ... Removing python3-certifi (2023.11.17-1) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing cython3 (3.0.8-1) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-7) ... Removing libtk8.6:amd64 (8.6.13-2) ... Removing libxft2:amd64 (2.3.6-1) ... Removing libfontconfig1:amd64 (2.14.2-6+b1) ... Removing fontconfig-config (2.14.2-6+b1) ... Removing python-matplotlib-data (3.6.3-1) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing fonts-lyx (2.4.0~RC1-2) ... Removing python3-pandas (2.1.4+dfsg-3) ... Removing python3-pandas-lib:amd64 (2.1.4+dfsg-3) ... Removing python3-contourpy (1.0.7-1+b2) ... Removing libraqm0:amd64 (0.10.1-1) ... Removing libharfbuzz0b:amd64 (8.3.0-2) ... Removing libfreetype6:amd64 (2.13.2+dfsg-1+b1) ... Removing python3-pysam (0.22.0+ds-1+b1) ... Removing libhts3:amd64 (1.18+ds-1) ... Removing libcurl3-gnutls:amd64 (8.6.0-1) ... Removing libbrotli1:amd64 (1.1.0-2+b3) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing libxrender1:amd64 (1:0.9.10-1.1) ... Removing libtiff6:amd64 (4.5.1+git230720-4) ... Removing libdeflate0:amd64 (1.19-1) ... Removing python3.9-dbg (3.9.2-1) ... Removing python3.9 (3.9.2-1) ... Removing python3.9-minimal (3.9.2-1) ... Removing libpython3.9-dbg:amd64 (3.9.2-1) ... Removing libfribidi0:amd64 (1.0.13-3+b1) ... Removing libglib2.0-0:amd64 (2.78.3-2) ... Removing libimagequant0:amd64 (2.18.0-1) ... Removing libgomp1:amd64 (14-20240201-3) ... Removing libgraphite2-3:amd64 (1.3.14-2) ... Removing libhtscodecs2:amd64 (1.6.0-1) ... Removing libjbig0:amd64 (2.1-6.1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-2+b2) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing liblcms2-2:amd64 (2.14-2) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-5+b3) ... Removing liblerc4:amd64 (4.0.0+ds-4) ... Removing libpython3.9-stdlib:amd64 (3.9.2-1) ... Removing libmpdec3:amd64 (2.5.1-2) ... Removing python3-yaml (6.0.1-2) ... Removing libnghttp2-14:amd64 (1.59.0-1) ... Removing libopenjp2-7:amd64 (2.5.0-2+b2) ... Removing libpng16-16:amd64 (1.6.42-1) ... Removing libpsl5:amd64 (0.21.2-1+b1) ... Removing python3-dbg (3.11.6-1) ... Removing libpython3-dbg:amd64 (3.11.6-1) ... Removing python3.11-dbg (3.11.7-2) ... Removing libpython3.11-dbg:amd64 (3.11.7-2) ... dpkg: warning: while removing libpython3.11-dbg:amd64, directory '/usr/lib/python3.11/config-3.11d-x86_64-linux-gnu' not empty so not removed Removing libpython3.9-minimal:amd64 (3.9.2-1) ... Removing libqhull-r8.0:amd64 (2020.2-6) ... Removing libquadmath0:amd64 (14-20240201-3) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-4+b1) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-4+b1) ... Removing libwebpmux3:amd64 (1.3.2-0.3) ... Removing libwebpdemux2:amd64 (1.3.2-0.3) ... Removing libwebp7:amd64 (1.3.2-0.3) ... Removing libsharpyuv0:amd64 (1.3.2-0.3) ... Removing libssh2-1:amd64 (1.11.0-4) ... Removing libtcl8.6:amd64 (8.6.13+dfsg-2) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing libyaml-0-2:amd64 (0.2.5-1) ... Removing openssl (3.1.5-1) ... Removing python3-chardet (5.2.0+dfsg-1) ... Removing python3-charset-normalizer (3.3.2-1) ... Removing python3-click (8.1.6-1) ... Removing python3-colorama (0.4.6-4) ... Removing python3-cycler (0.11.0-1) ... Removing python3-dateutil (2.8.2-3) ... Removing python3-idna (3.3-2) ... Removing python3-kiwisolver (1.4.4-1+b2) ... Removing python3-nose (1.3.7-12) ... Removing python3-packaging (23.2-1) ... Removing python3-pyparsing (3.1.1-1) ... Removing python3-urllib3 (1.26.18-2) ... Removing python3-zombie-imp (0.0.2-2) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing libx11-6:amd64 (2:1.8.7-1) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.8-1) ... Removing libx11-data (2:1.8.7-1) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing python3-ufolib2 (0.16.0+dfsg1-1) ... Removing python3-attr (23.2.0-1) ... Removing python3-fonttools (4.46.0-1) ... Removing python3-scipy (1.10.1-10) ... Removing python3-numpy (1:1.24.2-2) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Removing liblapack3:amd64 (3.12.0-2) ... Removing libblas3:amd64 (3.12.0-2) ... Removing libgfortran5:amd64 (14-20240201-3) ... Removing python3-lxml:amd64 (5.1.0-1) ... Removing libxslt1.1:amd64 (1.1.35-1) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Removing libicu72:amd64 (72.1-4) ... Removing python3.12 (3.12.1-2) ... Removing libpython3.12-stdlib:amd64 (3.12.1-2) ... Removing python3-sympy (1.12-7) ... Removing python3.12-minimal (3.12.1-2) ... Removing libpython3.12-minimal:amd64 (3.12.1-2) ... Removing python3-fs (2.4.16-3) ... Removing python3-appdirs (1.4.4-4) ... Removing python3-brotli (1.1.0-2+b3) ... Removing python3-decorator (5.1.1-5) ... Removing python3-lz4 (4.0.2+dfsg-1+b3) ... Removing python3-mpmath (1.2.1-2) ... Removing python3-pkg-resources (68.1.2-2) ... Removing python3-six (1.16.0-4) ... Removing python3-tz (2023.4-1) ... Removing python3-unicodedata2 (15.1.0+ds-1+b1) ... Removing unicode-data (15.1.0-1) ... Removing python3 (3.11.6-1) ... Removing libpython3-stdlib:amd64 (3.11.6-1) ... Removing python3.11 (3.11.7-2) ... Removing python3-minimal (3.11.6-1) ... Removing python3.11-minimal (3.11.7-2) ... Removing libexpat1:amd64 (2.5.0-2+b2) ... Removing libpython3.11-stdlib:amd64 (3.11.7-2) ... find: '/usr/lib/python3': No such file or directory Removing libncursesw6:amd64 (6.4+20240113-1) ... Removing libpython3.11-minimal:amd64 (3.11.7-2) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.2-3) ... Removing libsqlite3-0:amd64 (3.45.1-1) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-3) ... Processing triggers for libc-bin (2.37-15) ... 2m30.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'apt-get', 'remove', 'blt', 'ca-certificates', 'cython3', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-lyx', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-dbg:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-dbg:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.9-dbg:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtk8.6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'openssl', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-bioframe', 'python3-brotli', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-dbg', 'python3-decorator', 'python3-fonttools', 'python3-fs', 'python3-idna', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-nose', 'python3-numpy', 'python3-packaging', 'python3-pairtools', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pyparsing', 'python3-pysam', 'python3-requests', 'python3-scipy', 'python3-six', 'python3-sympy', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-yaml', 'python3-zombie-imp', 'python3.11', 'python3.11-dbg', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'python3.9', 'python3.9-dbg', 'python3.9-minimal', 'readline-common', 'tk8.6-blt2.5', 'unicode-data', 'x11-common'] 2m30.9s INFO: Running scripts post_remove 2m30.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_remove_exceptions'] 2m30.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_remove_exceptions'] 2m30.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'dpkg', '--purge', 'blt', 'ca-certificates', 'cython3', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-lyx', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-dbg:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-dbg:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.9-dbg:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtk8.6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'openssl', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-bioframe', 'python3-brotli', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-dbg', 'python3-decorator', 'python3-fonttools', 'python3-fs', 'python3-idna', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-nose', 'python3-numpy', 'python3-packaging', 'python3-pairtools', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pyparsing', 'python3-pysam', 'python3-requests', 'python3-scipy', 'python3-six', 'python3-sympy', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-yaml', 'python3-zombie-imp', 'python3.11', 'python3.11-dbg', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'python3.9', 'python3.9-dbg', 'python3.9-minimal', 'readline-common', 'tk8.6-blt2.5', 'unicode-data', 'x11-common'] 2m31.4s DUMP: dpkg: warning: ignoring request to remove blt which isn't installed (Reading database ... 7505 files and directories currently installed.) Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove cython3 which isn't installed Purging configuration files for fontconfig-config (2.14.2-6+b1) ... Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... dpkg: warning: ignoring request to remove fonts-lyx which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libcurl3-gnutls which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.78.3-2) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhts3 which isn't installed dpkg: warning: ignoring request to remove libhtscodecs2 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-jquery-ui which isn't installed dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-dbg which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.11-dbg which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.7-2) ... dpkg: warning: while removing libpython3.11-minimal:amd64, directory '/usr/lib/python3.11' not empty so not removed dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed Purging configuration files for libpython3.12-minimal:amd64 (3.12.1-2) ... dpkg: warning: ignoring request to remove libpython3.12-stdlib which isn't installed dpkg: warning: ignoring request to remove libpython3.9-dbg which isn't installed Purging configuration files for libpython3.9-minimal:amd64 (3.9.2-1) ... dpkg: warning: ignoring request to remove libpython3.9-stdlib which isn't installed dpkg: warning: ignoring request to remove libqhull-r8.0 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libwebp7 which isn't installed dpkg: warning: ignoring request to remove libwebpdemux2 which isn't installed dpkg: warning: ignoring request to remove libwebpmux3 which isn't installed dpkg: warning: ignoring request to remove libx11-6 which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed dpkg: warning: ignoring request to remove libxau6 which isn't installed dpkg: warning: ignoring request to remove libxcb1 which isn't installed dpkg: warning: ignoring request to remove libxdmcp6 which isn't installed dpkg: warning: ignoring request to remove libxext6 which isn't installed dpkg: warning: ignoring request to remove libxft2 which isn't installed dpkg: warning: ignoring request to remove libxml2 which isn't installed dpkg: warning: ignoring request to remove libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed Purging configuration files for media-types (10.1.0) ... Purging configuration files for netbase (6.4) ... Purging configuration files for openssl (3.1.5-1) ... Purging configuration files for python-matplotlib-data (3.6.3-1) ... Purging configuration files for python3 (3.11.6-1) ... dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-bioframe which isn't installed dpkg: warning: ignoring request to remove python3-brotli which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove python3-chardet which isn't installed dpkg: warning: ignoring request to remove python3-charset-normalizer which isn't installed dpkg: warning: ignoring request to remove python3-click which isn't installed dpkg: warning: ignoring request to remove python3-colorama which isn't installed dpkg: warning: ignoring request to remove python3-contourpy which isn't installed dpkg: warning: ignoring request to remove python3-cycler which isn't installed dpkg: warning: ignoring request to remove python3-dateutil which isn't installed dpkg: warning: ignoring request to remove python3-dbg which isn't installed dpkg: warning: ignoring request to remove python3-decorator which isn't installed dpkg: warning: ignoring request to remove python3-fonttools which isn't installed dpkg: warning: ignoring request to remove python3-fs which isn't installed dpkg: warning: ignoring request to remove python3-idna which isn't installed dpkg: warning: ignoring request to remove python3-kiwisolver which isn't installed dpkg: warning: ignoring request to remove python3-lxml which isn't installed dpkg: warning: ignoring request to remove python3-lz4 which isn't installed dpkg: warning: ignoring request to remove python3-matplotlib which isn't installed dpkg: warning: ignoring request to remove python3-minimal which isn't installed dpkg: warning: ignoring request to remove python3-mpmath which isn't installed dpkg: warning: ignoring request to remove python3-nose which isn't installed dpkg: warning: ignoring request to remove python3-numpy which isn't installed dpkg: warning: ignoring request to remove python3-packaging which isn't installed dpkg: warning: ignoring request to remove python3-pairtools which isn't installed dpkg: warning: ignoring request to remove python3-pandas which isn't installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pil.imagetk which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-pysam which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed Purging configuration files for python3-sympy (1.12-7) ... dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-ufolib2 which isn't installed dpkg: warning: ignoring request to remove python3-unicodedata2 which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3-zombie-imp which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed dpkg: warning: ignoring request to remove python3.11-dbg which isn't installed Purging configuration files for python3.11-minimal (3.11.7-2) ... dpkg: warning: ignoring request to remove python3.12 which isn't installed Purging configuration files for python3.12-minimal (3.12.1-2) ... dpkg: warning: ignoring request to remove python3.9 which isn't installed dpkg: warning: ignoring request to remove python3.9-dbg which isn't installed Purging configuration files for python3.9-minimal (3.9.2-1) ... Purging configuration files for readline-common (8.2-3) ... dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed dpkg: warning: ignoring request to remove unicode-data which isn't installed Purging configuration files for x11-common (1:7.7+23) ... dpkg: warning: while removing x11-common, directory '/etc/init.d' not empty so not removed 2m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'dpkg', '--purge', 'blt', 'ca-certificates', 'cython3', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-lyx', 'libblas3:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libcurl3-gnutls:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhts3:amd64', 'libhtscodecs2:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-jquery', 'libjs-jquery-ui', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'libmpdec3:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libopenjp2-7:amd64', 'libpng16-16:amd64', 'libpsl5:amd64', 'libpython3-dbg:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-dbg:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.9-dbg:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libtcl8.6:amd64', 'libtiff6:amd64', 'libtk8.6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libyaml-0-2:amd64', 'media-types', 'netbase', 'openssl', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-attr', 'python3-bioframe', 'python3-brotli', 'python3-certifi', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-contourpy', 'python3-cycler', 'python3-dateutil', 'python3-dbg', 'python3-decorator', 'python3-fonttools', 'python3-fs', 'python3-idna', 'python3-kiwisolver', 'python3-lxml:amd64', 'python3-lz4', 'python3-matplotlib', 'python3-minimal', 'python3-mpmath', 'python3-nose', 'python3-numpy', 'python3-packaging', 'python3-pairtools', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-pyparsing', 'python3-pysam', 'python3-requests', 'python3-scipy', 'python3-six', 'python3-sympy', 'python3-tk:amd64', 'python3-tz', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-yaml', 'python3-zombie-imp', 'python3.11', 'python3.11-dbg', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'python3.9', 'python3.9-dbg', 'python3.9-minimal', 'readline-common', 'tk8.6-blt2.5', 'unicode-data', 'x11-common'] 2m31.4s INFO: Running scripts post_purge 2m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_purge_exceptions'] 2m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_purge_exceptions'] 2m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'dpkg', '--purge', '--pending'] 2m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'dpkg', '--purge', '--pending'] 2m31.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'dpkg', '--remove', '--pending'] 2m31.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'dpkg', '--remove', '--pending'] 2m31.5s INFO: Running scripts post_test 2m31.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_test_exceptions'] 2m31.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'tmp/scripts/post_test_exceptions'] 2m31.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbw6vw966'] 2m32.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpbw6vw966'] 2m32.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'dpkg-divert', '--list'] 2m32.0s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 2m32.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'dpkg-divert', '--list'] 2m32.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'apt-get', 'clean'] 2m32.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpbw6vw966', 'apt-get', 'clean'] 2m32.0s DEBUG: Recording chroot state 2m32.7s INFO: Warning: Package purging left files on system: /usr/lib/python3.11/ owned by: libpython3.11-dbg:amd64, python3.11, libpython3.11-stdlib:amd64, python3-tk:amd64, python3-numpy, libpython3.11-minimal:amd64 /usr/lib/python3.11/config-3.11d-x86_64-linux-gnu/ owned by: libpython3.11-dbg:amd64 2m33.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbw6vw966/dev/shm'] 2m33.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbw6vw966/dev/shm'] 2m33.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbw6vw966/dev/console'] 2m33.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbw6vw966/dev/console'] 2m33.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbw6vw966/dev/ptmx'] 2m33.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbw6vw966/dev/ptmx'] 2m33.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbw6vw966/dev/pts'] 2m33.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbw6vw966/dev/pts'] 2m33.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpbw6vw966/proc'] 2m33.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpbw6vw966/proc'] 2m33.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpbw6vw966'] 2m33.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpbw6vw966'] 2m33.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpbw6vw966 2m33.3s INFO: PASS: Upgrading between Debian distributions. 2m33.3s INFO: PASS: All tests. 2m33.3s INFO: piuparts run ends. ret=0 End: 2024-02-05 03:44:20 GMT