Start: 2024-02-18 23:24:47 GMT [stable] Package: q2-dada2 Version: 2020.11.1-3 Installed-Size: 729 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3:any, r-base-core, r-bioc-dada2, qiime, q2-types, python3-biom-format, python3-skbio Description: QIIME 2 plugin to work with adapters in sequence data Homepage: https://qiime2.org/ Description-md5: e1c8db6d62a4966c98d7f3ec4d9ab3cb Section: science Priority: optional Filename: pool/main/q/q2-dada2/q2-dada2_2020.11.1-3_amd64.deb Size: 394216 MD5sum: 6bafdf5ab6a7a54ff2e8fe740aee7e93 SHA256: daeba909aca8f7686033764e5b080277b818ffbc46c229fd36d466e7a718a81c [sid] Package: q2-dada2 Version: 2024.2.0-1 Installed-Size: 2289 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3:any, r-base-core, r-bioc-dada2 (>= 1.24.0+dfsg-2~), r-cran-optparse, qiime (>= 2024.2), q2-types (>= 2024.2), python3-biom-format, python3-skbio Description: QIIME 2 plugin to work with adapters in sequence data Homepage: https://qiime2.org/ Description-md5: e1c8db6d62a4966c98d7f3ec4d9ab3cb Section: science Priority: optional Filename: pool/main/q/q2-dada2/q2-dada2_2024.2.0-1_amd64.deb Size: 1814356 MD5sum: afcfb66e2da797c64b9186019cca9a2b SHA256: b5aa8dc71cd771dac696ae10ce2759bd5920d9826256c04ca884aafa1e129afe Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d stable -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat --apt q2-dada2=2024.2.0-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.3.1~202401311836~1.3-2-g28295102 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d stable -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat --apt q2-dada2=2024.2.0-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-28-amd64 #1 SMP Debian 5.10.209-2 (2024-01-31) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpp477gc8r 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpp477gc8r 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m2.1s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpp477gc8r/proc'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpp477gc8r/proc'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpp477gc8r/dev/pts'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpp477gc8r/dev/pts'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpp477gc8r/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpp477gc8r/dev/ptmx'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpp477gc8r/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpp477gc8r/dev/ptmx'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpp477gc8r/dev/console'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmpp477gc8r/dev/console'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpp477gc8r/dev/shm'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpp477gc8r/dev/shm'] 0m2.1s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m2.1s DEBUG: Created policy-rc.d and chmodded it. 0m2.1s DEBUG: Created resolv.conf. 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpp477gc8r/tmp/scripts/ 0m2.2s INFO: Running scripts post_chroot_unpack 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m2.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-get', 'update'] 0m5.9s DUMP: Get:1 http://deb.debian.org/debian bullseye InRelease [116 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 Packages [8068 kB] Get:3 http://deb.debian.org/debian bullseye/main Translation-en [6236 kB] Fetched 14.4 MB in 3s (4661 kB/s) Reading package lists... 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-get', 'update'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-get', '-yf', 'dist-upgrade'] 0m9.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... The following packages will be upgraded: base-files libc-bin libc6 libgnutls30 perl-base tar tzdata 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 7841 kB of archives. After this operation, 44.0 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 base-files amd64 11.1+deb11u9 [70.2 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 perl-base amd64 5.32.1-4+deb11u3 [1628 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 tar amd64 1.34+dfsg-1+deb11u1 [847 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libc6 amd64 2.31-13+deb11u8 [2823 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 libc-bin amd64 2.31-13+deb11u8 [829 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libgnutls30 amd64 3.7.1-5+deb11u4 [1340 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 tzdata all 2024a-0+deb11u1 [304 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7841 kB in 0s (51.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../base-files_11.1+deb11u9_amd64.deb ... Unpacking base-files (11.1+deb11u9) over (11.1+deb11u8) ... Setting up base-files (11.1+deb11u9) ... Installing new version of config file /etc/debian_version ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../perl-base_5.32.1-4+deb11u3_amd64.deb ... Unpacking perl-base (5.32.1-4+deb11u3) over (5.32.1-4+deb11u2) ... Setting up perl-base (5.32.1-4+deb11u3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../tar_1.34+dfsg-1+deb11u1_amd64.deb ... Unpacking tar (1.34+dfsg-1+deb11u1) over (1.34+dfsg-1) ... Setting up tar (1.34+dfsg-1+deb11u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../libc6_2.31-13+deb11u8_amd64.deb ... Unpacking libc6:amd64 (2.31-13+deb11u8) over (2.31-13+deb11u6) ... Setting up libc6:amd64 (2.31-13+deb11u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../libc-bin_2.31-13+deb11u8_amd64.deb ... Unpacking libc-bin (2.31-13+deb11u8) over (2.31-13+deb11u6) ... Setting up libc-bin (2.31-13+deb11u8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.1-5+deb11u4_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.1-5+deb11u4) over (3.7.1-5+deb11u3) ... Setting up libgnutls30:amd64 (3.7.1-5+deb11u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6664 files and directories currently installed.) Preparing to unpack .../tzdata_2024a-0+deb11u1_all.deb ... Unpacking tzdata (2024a-0+deb11u1) over (2021a-1+deb11u10) ... Setting up tzdata (2024a-0+deb11u1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Feb 18 23:24:56 UTC 2024. Universal Time is now: Sun Feb 18 23:24:56 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Processing triggers for libc-bin (2.31-13+deb11u8) ... 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-get', '-yf', 'dist-upgrade'] 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m9.3s DUMP: 29fcf27583012b383113cec2bf757015 - 0m9.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m9.3s INFO: Running scripts post_setup 0m9.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_setup_dummy_users'] 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_setup_dummy_users'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_setup_forbid_home'] 0m10.6s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_setup_forbid_home'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_setup_force-unsafe-io'] 0m10.6s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' dpkg-divert: warning: diverting file '/bin/sync' from an Essential package with rename is dangerous, use --no-rename '/bin/sync' -> 'true' 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_setup_force-unsafe-io'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_setup_minimize'] 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_setup_minimize'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_setup_squeeze-backports'] 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_setup_squeeze-backports'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_setup_zz_backports'] 0m10.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_setup_zz_backports'] 0m10.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m10.7s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u9 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u8 install ok installed libc6:amd64 libc6 2.31-13+deb11u8 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m10.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m10.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat 0m10.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp477gc8r'] 0m11.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp477gc8r'] 0m11.0s INFO: Running scripts is_testable 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/is_testable_uninstallable'] 0m11.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/is_testable_uninstallable'] 0m11.0s INFO: Running scripts pre_test 0m11.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_test_exceptions'] 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_test_exceptions'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_test_root_password'] 0m11.1s DUMP: New password: Retype new password: passwd: password updated successfully 0m11.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_test_root_password'] 0m11.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-cache', 'show', '--no-all-versions', 'q2-dada2'] 0m11.4s DUMP: Package: q2-dada2 Version: 2020.11.1-3 Installed-Size: 729 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3:any, r-base-core, r-bioc-dada2, qiime, q2-types, python3-biom-format, python3-skbio Description-en: QIIME 2 plugin to work with adapters in sequence data QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features: * Integrated and automatic tracking of data provenance * Semantic type system * Plugin system for extending microbiome analysis functionality * Support for multiple types of user interfaces (e.g. API, command line, graphical) . QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline. . QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed. . This package wraps the dada2 R package in BioConductor for modeling and correcting Illumina-sequenced amplicon errors. This was shown to improve the sensitivity of diversity analyses. Description-md5: e1c8db6d62a4966c98d7f3ec4d9ab3cb Homepage: https://qiime2.org/ Section: science Priority: optional Filename: pool/main/q/q2-dada2/q2-dada2_2020.11.1-3_amd64.deb Size: 394216 MD5sum: 6bafdf5ab6a7a54ff2e8fe740aee7e93 SHA256: daeba909aca8f7686033764e5b080277b818ffbc46c229fd36d466e7a718a81c 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-cache', 'show', '--no-all-versions', 'q2-dada2'] 0m11.4s INFO: apt-cache knows about the following packages: q2-dada2 0m11.4s INFO: Running scripts pre_install 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_database-server'] 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_database-server'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_exceptions'] 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_exceptions'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_extras'] 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_extras'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_foreign_architecture'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m11.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-cache', 'policy'] 0m11.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.9,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-cache', 'policy'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-cache', 'policy', 'q2-dada2'] 0m11.5s DUMP: q2-dada2: Installed: (none) Candidate: 2020.11.1-3 Version table: 2020.11.1-3 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m11.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-cache', 'policy', 'q2-dada2'] 0m11.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-get', '-y', 'install', 'q2-dada2'] 1m51.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates cython3 fontconfig fontconfig-config fonts-dejavu-core fonts-lyx libaec0 libasan6 libatomic1 libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcairo2 libcrypt-dev libcurl4 libdatrie1 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgcc-10-dev libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libice6 libicu67 libimagequant0 libitm1 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 liblsan0 liblzf1 libmd0 libmpdec3 libncurses6 libncursesw6 libnghttp2-14 libnsl-dev libopenblas-base libopenblas0 libopenblas0-pthread libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libperl5.32 libpixman-1-0 libpng16-16 libprocps8 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsqlite3-0 libssh2-1 libssw0 libstdc++-10-dev libsz2 libtbb-dev libtbb2 libtcl8.6 libthai-data libthai0 libtiff5 libtirpc-dev libtk8.6 libtsan0 libubsan1 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6 libyajl2 libyaml-0-2 linux-libc-dev littler mailcap media-types mime-support openssl perl perl-modules-5.32 procps python-matplotlib-data python3 python3-backcall python3-bibtexparser python3-biom-format python3-cachecontrol python3-certifi python3-chardet python3-click python3-colorama python3-cycler python3-dateutil python3-decorator python3-distutils python3-future python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-ijson python3-ipython python3-ipython-genutils python3-jedi python3-joblib python3-kiwisolver python3-lib2to3 python3-lockfile python3-matplotlib python3-minimal python3-msgpack python3-natsort python3-networkx python3-numpy python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pickleshare python3-pil python3-pkg-resources python3-prompt-toolkit python3-ptyprocess python3-pygments python3-pyparsing python3-requests python3-scipy python3-setuptools python3-six python3-skbio python3-sklearn python3-sklearn-lib python3-threadpoolctl python3-traitlets python3-tz python3-tzlocal python3-urllib3 python3-wcwidth python3-yaml python3.9 python3.9-minimal q2-types qiime r-base-core r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-dada2 r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4vectors r-bioc-shortread r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-assertthat r-cran-bh r-cran-bitops r-cran-brio r-cran-callr r-cran-cli r-cran-colorspace r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-hwriter r-cran-isoband r-cran-jpeg r-cran-jsonlite r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-ps r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppparallel r-cran-rcurl r-cran-rematch2 r-cran-reshape2 r-cran-rlang r-cran-rprojroot r-cran-rstudioapi r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-testthat r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr readline-common sensible-utils ttf-bitstream-vera ucf unzip x11-common xdg-utils zip zlib1g-dev Suggested packages: cython-doc libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev glibc-doc manpages-dev gdbm-l10n libjs-jquery-ui-docs liblcms2-utils libstdc++-10-doc libtbb-doc tcl8.6 tk8.6 perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-tk python3-venv python-biom-format-doc python-cycler-doc python-future-doc python-h5py-doc python-ipython-doc python-lockfile-doc dvipng ffmpeg ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-nose python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft python-natsort-doc python-networkx-doc gcc gfortran python-numpy-doc python3-dev python3-numpy-dbg python3-pytest python-pandas-doc python3-statsmodels python-pexpect-doc python-pil-doc python3-pil-dbg python-pygments-doc python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-setuptools-doc python-skbio-doc python3-dap python-sklearn-doc python3.9-venv python3.9-doc binutils binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-bioc-all r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc r-bioc-variantannotation r-cran-codetools r-bioc-biocstyle r-cran-knitr r-cran-data.table r-bioc-bsgenome r-bioc-genomicfeatures r-cran-rmarkdown r-bioc-hdf5array r-bioc-genefilter r-bioc-delayedmatrixstats r-cran-runit r-bioc-rtracklayer r-bioc-edger r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq r-bioc-sparsematrixstats r-bioc-graph r-bioc-biomart r-bioc-rhdf5 r-cran-covr r-cran-htmlwidgets r-cran-prettycode r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs r-cran-dplyr r-cran-viridis r-cran-unitizer r-cran-hmisc r-cran-maps r-cran-maptools r-cran-multcomp r-cran-rpart r-cran-sf r-cran-svglite r-cran-dbi r-cran-rsqlite r-cran-r.utils r-cran-forcats r-cran-magick r-cran-httr r-cran-curl r-cran-getopt r-cran-base64enc r-cran-bit64 r-cran-cpp11 r-cran-doparallel r-cran-iterators r-cran-itertools r-cran-inline r-cran-xml r-cran-dichromat r-cran-rmpi r-cran-rsprng r-cran-rlecuyer r-cran-mockery r-cran-usethis r-cran-bench r-cran-blob r-cran-formattable r-cran-hms r-cran-htmltools r-cran-purrr r-cran-tidyr r-cran-zeallot readline-doc Recommended packages: python3-dev gcc manpages manpages-dev libc-devtools libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libldap-common libgpm2 publicsuffix libsasl2-modules bzip2 file xz-utils netbase psmisc python3-pytest python3-simplejson python3-psutil python3-tk python3-gdal python3-pydot python3-pygraphviz python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-xlwt python3-bs4 python3-html5lib python3-lxml python3-tables python3-jinja2 python3-numba python3-olefile g++ | c++-compiler python3-nose q2cli q2templates q2-cutadapt q2-metadata q2-demux q2-quality-filter q2-feature-classifier q2-feature-table r-recommended r-base-dev r-doc-html r-cran-runit r-cran-batchjobs r-cran-doparallel r-cran-batchtools r-cran-rmpi r-bioc-annotate r-cran-cliapp r-cran-mockery r-cran-testit r-cran-codetools r-cran-survival r-cran-sp r-cran-mapproj r-cran-hexbin r-cran-vdiffr r-cran-quantreg r-cran-xml2 r-cran-lubridate r-cran-domc r-cran-abind r-cran-curl r-cran-rmarkdown r-cran-mockr r-cran-bit64 r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-data.table r-cran-rsqlite r-cran-knitr r-cran-dplyr r-cran-generics r-cran-dbi libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ca-certificates cython3 fontconfig fontconfig-config fonts-dejavu-core fonts-lyx libaec0 libasan6 libatomic1 libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcairo2 libcrypt-dev libcurl4 libdatrie1 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgcc-10-dev libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libice6 libicu67 libimagequant0 libitm1 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 liblsan0 liblzf1 libmd0 libmpdec3 libncurses6 libncursesw6 libnghttp2-14 libnsl-dev libopenblas-base libopenblas0 libopenblas0-pthread libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libperl5.32 libpixman-1-0 libpng16-16 libprocps8 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libsqlite3-0 libssh2-1 libssw0 libstdc++-10-dev libsz2 libtbb-dev libtbb2 libtcl8.6 libthai-data libthai0 libtiff5 libtirpc-dev libtk8.6 libtsan0 libubsan1 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxt6 libyajl2 libyaml-0-2 linux-libc-dev littler mailcap media-types mime-support openssl perl perl-modules-5.32 procps python-matplotlib-data python3 python3-backcall python3-bibtexparser python3-biom-format python3-cachecontrol python3-certifi python3-chardet python3-click python3-colorama python3-cycler python3-dateutil python3-decorator python3-distutils python3-future python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-ijson python3-ipython python3-ipython-genutils python3-jedi python3-joblib python3-kiwisolver python3-lib2to3 python3-lockfile python3-matplotlib python3-minimal python3-msgpack python3-natsort python3-networkx python3-numpy python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pickleshare python3-pil python3-pkg-resources python3-prompt-toolkit python3-ptyprocess python3-pygments python3-pyparsing python3-requests python3-scipy python3-setuptools python3-six python3-skbio python3-sklearn python3-sklearn-lib python3-threadpoolctl python3-traitlets python3-tz python3-tzlocal python3-urllib3 python3-wcwidth python3-yaml python3.9 python3.9-minimal q2-dada2 q2-types qiime r-base-core r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-dada2 r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4vectors r-bioc-shortread r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-assertthat r-cran-bh r-cran-bitops r-cran-brio r-cran-callr r-cran-cli r-cran-colorspace r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-hwriter r-cran-isoband r-cran-jpeg r-cran-jsonlite r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-ps r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppparallel r-cran-rcurl r-cran-rematch2 r-cran-reshape2 r-cran-rlang r-cran-rprojroot r-cran-rstudioapi r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-testthat r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr readline-common sensible-utils ttf-bitstream-vera ucf unzip x11-common xdg-utils zip zlib1g-dev 0 upgraded, 280 newly installed, 0 to remove and 0 not upgraded. Need to get 240 MB of archives. After this operation, 813 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 perl-modules-5.32 all 5.32.1-4+deb11u3 [2823 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.19-2 [64.9 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.19-2 [44.7 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libperl5.32 amd64 5.32.1-4+deb11u3 [4121 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 perl amd64 5.32.1-4+deb11u3 [293 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 mailcap all 3.69 [31.7 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 mime-support all 3.66 [10.9 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.2+20201114-2+deb11u2 [132 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2+deb11u2 [102 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get:25 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1w-0+deb11u1 [859 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 cython3 amd64 0.29.21-3+b1 [1312 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:32 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1+deb11u1 [418 kB] Get:33 http://deb.debian.org/debian bullseye/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:34 http://deb.debian.org/debian bullseye/main amd64 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get:35 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:36 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:37 http://deb.debian.org/debian bullseye/main amd64 fontconfig amd64 2.13.1-4.2 [417 kB] Get:38 http://deb.debian.org/debian bullseye/main amd64 fonts-lyx all 2.3.6-1 [205 kB] Get:39 http://deb.debian.org/debian bullseye/main amd64 libaec0 amd64 1.0.4-1 [20.3 kB] Get:40 http://deb.debian.org/debian bullseye/main amd64 libasan6 amd64 10.2.1-6 [2065 kB] Get:41 http://deb.debian.org/debian bullseye/main amd64 libatomic1 amd64 10.2.1-6 [9008 B] Get:42 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3+deb11u1 [153 kB] Get:43 http://deb.debian.org/debian bullseye/main amd64 libgomp1 amd64 10.2.1-6 [99.9 kB] Get:44 http://deb.debian.org/debian bullseye/main amd64 libitm1 amd64 10.2.1-6 [25.8 kB] Get:45 http://deb.debian.org/debian bullseye/main amd64 liblsan0 amd64 10.2.1-6 [828 kB] Get:46 http://deb.debian.org/debian bullseye/main amd64 libtsan0 amd64 10.2.1-6 [2000 kB] Get:47 http://deb.debian.org/debian bullseye/main amd64 libubsan1 amd64 10.2.1-6 [777 kB] Get:48 http://deb.debian.org/debian bullseye/main amd64 libquadmath0 amd64 10.2.1-6 [145 kB] Get:49 http://deb.debian.org/debian bullseye/main amd64 libgcc-10-dev amd64 10.2.1-6 [2328 kB] Get:50 http://deb.debian.org/debian bullseye/main amd64 libc-dev-bin amd64 2.31-13+deb11u8 [276 kB] Get:51 http://deb.debian.org/debian bullseye/main amd64 linux-libc-dev amd64 5.10.209-2 [1698 kB] Get:52 http://deb.debian.org/debian bullseye/main amd64 libcrypt-dev amd64 1:4.4.18-4 [104 kB] Get:53 http://deb.debian.org/debian bullseye/main amd64 libtirpc-dev amd64 1.3.1-1+deb11u1 [191 kB] Get:54 http://deb.debian.org/debian bullseye/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:55 http://deb.debian.org/debian bullseye/main amd64 libc6-dev amd64 2.31-13+deb11u8 [2361 kB] Get:56 http://deb.debian.org/debian bullseye/main amd64 libstdc++-10-dev amd64 10.2.1-6 [1741 kB] Get:57 http://deb.debian.org/debian bullseye/main amd64 libboost1.74-dev amd64 1.74.0-9 [9534 kB] Get:58 http://deb.debian.org/debian bullseye/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get:59 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get:60 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1+deb11u1 [108 kB] Get:61 http://deb.debian.org/debian bullseye/main amd64 libpixman-1-0 amd64 0.40.0-1.1~deb11u1 [543 kB] Get:62 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:63 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:64 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:65 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1+deb11u2 [311 kB] Get:66 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1+deb11u2 [772 kB] Get:67 http://deb.debian.org/debian bullseye/main amd64 libxcb-render0 amd64 1.14-3 [111 kB] Get:68 http://deb.debian.org/debian bullseye/main amd64 libxcb-shm0 amd64 1.14-3 [101 kB] Get:69 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get:70 http://deb.debian.org/debian bullseye/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:71 http://deb.debian.org/debian bullseye/main amd64 libcairo2 amd64 1.16.0-5 [694 kB] Get:72 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1+deb11u1 [69.1 kB] Get:73 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1+deb11u1 [106 kB] Get:74 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3+deb11u1 [232 kB] Get:75 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1+deb11u1 [77.2 kB] Get:76 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:77 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:78 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get:79 http://deb.debian.org/debian bullseye/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u11 [347 kB] Get:80 http://deb.debian.org/debian bullseye/main amd64 libdatrie1 amd64 0.2.13-1 [42.7 kB] Get:81 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get:82 http://deb.debian.org/debian bullseye/main amd64 libfribidi0 amd64 1.0.8-2+deb11u1 [64.9 kB] Get:83 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get:84 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-0 amd64 2.66.8-1+deb11u1 [1374 kB] Get:85 http://deb.debian.org/debian bullseye/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:86 http://deb.debian.org/debian bullseye/main amd64 libharfbuzz0b amd64 2.7.4-1 [1471 kB] Get:87 http://deb.debian.org/debian bullseye/main amd64 libsz2 amd64 1.0.4-1 [6760 B] Get:88 http://deb.debian.org/debian bullseye/main amd64 libhdf5-103-1 amd64 1.10.6+repack-4+deb11u1 [1189 kB] Get:89 http://deb.debian.org/debian bullseye/main amd64 libhdf5-hl-100 amd64 1.10.6+repack-4+deb11u1 [81.8 kB] Get:90 http://deb.debian.org/debian bullseye/main amd64 x11-common all 1:7.7+22 [252 kB] Get:91 http://deb.debian.org/debian bullseye/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:92 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:93 http://deb.debian.org/debian bullseye/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get:94 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:95 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get:96 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get:97 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-ui all 1.12.1+dfsg-8+deb11u2 [232 kB] Get:98 http://deb.debian.org/debian bullseye/main amd64 libopenblas0-pthread amd64 0.3.13+ds-3+deb11u1 [6016 kB] Get:99 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3+deb11u1 [2166 kB] Get:100 http://deb.debian.org/debian bullseye/main amd64 liblbfgsb0 amd64 3.0+dfsg.3-9 [28.5 kB] Get:101 http://deb.debian.org/debian bullseye/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get:102 http://deb.debian.org/debian bullseye/main amd64 liblzf1 amd64 3.6-3 [10.2 kB] Get:103 http://deb.debian.org/debian bullseye/main amd64 libopenblas0 amd64 0.3.13+ds-3+deb11u1 [32.9 kB] Get:104 http://deb.debian.org/debian bullseye/main amd64 libopenblas-base amd64 0.3.13+ds-3+deb11u1 [31.7 kB] Get:105 http://deb.debian.org/debian bullseye/main amd64 libthai-data all 0.1.28-3 [170 kB] Get:106 http://deb.debian.org/debian bullseye/main amd64 libthai0 amd64 0.1.28-3 [54.2 kB] Get:107 http://deb.debian.org/debian bullseye/main amd64 libpango-1.0-0 amd64 1.46.2-3 [191 kB] Get:108 http://deb.debian.org/debian bullseye/main amd64 libpangoft2-1.0-0 amd64 1.46.2-3 [62.2 kB] Get:109 http://deb.debian.org/debian bullseye/main amd64 libpangocairo-1.0-0 amd64 1.46.2-3 [50.6 kB] Get:110 http://deb.debian.org/debian bullseye/main amd64 libpaper1 amd64 1.1.28+b1 [21.6 kB] Get:111 http://deb.debian.org/debian bullseye/main amd64 libpaper-utils amd64 1.1.28+b1 [18.3 kB] Get:112 http://deb.debian.org/debian bullseye/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:113 http://deb.debian.org/debian bullseye/main amd64 libssw0 amd64 1.1-13 [19.7 kB] Get:114 http://deb.debian.org/debian bullseye/main amd64 libtbb2 amd64 2020.3-1 [161 kB] Get:115 http://deb.debian.org/debian bullseye/main amd64 libtbb-dev amd64 2020.3-1 [313 kB] Get:116 http://deb.debian.org/debian bullseye/main amd64 libtcl8.6 amd64 8.6.11+dfsg-1 [1018 kB] Get:117 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1+deb11u2 [259 kB] Get:118 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1+deb11u5 [290 kB] Get:119 http://deb.debian.org/debian bullseye/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:120 http://deb.debian.org/debian bullseye/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:121 http://deb.debian.org/debian bullseye/main amd64 libtk8.6 amd64 8.6.11-2 [780 kB] Get:122 http://deb.debian.org/debian bullseye/main amd64 libwebpdemux2 amd64 0.6.1-2.1+deb11u2 [87.8 kB] Get:123 http://deb.debian.org/debian bullseye/main amd64 libwebpmux3 amd64 0.6.1-2.1+deb11u2 [97.7 kB] Get:124 http://deb.debian.org/debian bullseye/main amd64 libxt6 amd64 1:1.2.0-1 [189 kB] Get:125 http://deb.debian.org/debian bullseye/main amd64 libyajl2 amd64 2.1.0-3+deb11u2 [24.2 kB] Get:126 http://deb.debian.org/debian bullseye/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:127 http://deb.debian.org/debian bullseye/main amd64 zip amd64 3.0-12 [232 kB] Get:128 http://deb.debian.org/debian bullseye/main amd64 unzip amd64 6.0-26+deb11u1 [172 kB] Get:129 http://deb.debian.org/debian bullseye/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get:130 http://deb.debian.org/debian bullseye/main amd64 r-base-core amd64 4.0.4-1 [25.1 MB] Get:131 http://deb.debian.org/debian bullseye/main amd64 r-cran-littler amd64 0.3.12-1 [95.9 kB] Get:132 http://deb.debian.org/debian bullseye/main amd64 littler all 0.3.12-1 [15.6 kB] Get:133 http://deb.debian.org/debian bullseye/main amd64 python-matplotlib-data all 3.3.4-1 [4153 kB] Get:134 http://deb.debian.org/debian bullseye/main amd64 python3-backcall all 0.2.0-1 [10.7 kB] Get:135 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get:136 http://deb.debian.org/debian bullseye/main amd64 python3-future all 0.18.2-5 [349 kB] Get:137 http://deb.debian.org/debian bullseye/main amd64 python3-pyparsing all 2.4.7-1 [109 kB] Get:138 http://deb.debian.org/debian bullseye/main amd64 python3-bibtexparser all 1.1.0+ds-3 [31.5 kB] Get:139 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get:140 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get:141 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get:142 http://deb.debian.org/debian bullseye/main amd64 python3-h5py-serial amd64 2.10.0-9+b2 [655 kB] Get:143 http://deb.debian.org/debian bullseye/main amd64 python3-h5py all 2.10.0-9 [11.4 kB] Get:144 http://deb.debian.org/debian bullseye/main amd64 python3-colorama all 0.4.4-1 [28.5 kB] Get:145 http://deb.debian.org/debian bullseye/main amd64 python3-click all 7.1.2-1 [75.7 kB] Get:146 http://deb.debian.org/debian bullseye/main amd64 python3-dateutil all 2.8.1-6 [79.2 kB] Get:147 http://deb.debian.org/debian bullseye/main amd64 python3-tz all 2021.1-1 [34.8 kB] Get:148 http://deb.debian.org/debian bullseye/main amd64 python3-pandas-lib amd64 1.1.5+dfsg-2 [3287 kB] Get:149 http://deb.debian.org/debian bullseye/main amd64 python3-pandas all 1.1.5+dfsg-2 [2096 kB] Get:150 http://deb.debian.org/debian bullseye/main amd64 python3-decorator all 4.4.2-2 [15.8 kB] Get:151 http://deb.debian.org/debian bullseye/main amd64 python3-scipy amd64 1.6.0-2 [12.3 MB] Get:152 http://deb.debian.org/debian bullseye/main amd64 python3-biom-format amd64 2.1.10-1+b1 [132 kB] Get:153 http://deb.debian.org/debian bullseye/main amd64 python3-certifi all 2020.6.20-1 [151 kB] Get:154 http://deb.debian.org/debian bullseye/main amd64 python3-chardet all 4.0.0-1 [99.0 kB] Get:155 http://deb.debian.org/debian bullseye/main amd64 python3-idna all 2.10-1 [37.4 kB] Get:156 http://deb.debian.org/debian bullseye/main amd64 python3-urllib3 all 1.26.5-1~exp1 [114 kB] Get:157 http://deb.debian.org/debian bullseye/main amd64 python3-requests all 2.25.1+dfsg-2 [69.3 kB] Get:158 http://deb.debian.org/debian bullseye/main amd64 python3-msgpack amd64 1.0.0-6+b1 [69.2 kB] Get:159 http://deb.debian.org/debian bullseye/main amd64 python3-cachecontrol all 0.12.6-1 [16.4 kB] Get:160 http://deb.debian.org/debian bullseye/main amd64 python3-cycler all 0.10.0-3 [8084 B] Get:161 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get:162 http://deb.debian.org/debian bullseye/main amd64 python3-hdmedians amd64 0.14.1-1+b2 [103 kB] Get:163 http://deb.debian.org/debian bullseye/main amd64 python3-ijson amd64 3.1.4-1 [36.6 kB] Get:164 http://deb.debian.org/debian bullseye/main amd64 python3-parso all 0.8.1-1 [65.9 kB] Get:165 http://deb.debian.org/debian bullseye/main amd64 python3-jedi all 0.18.0-1 [620 kB] Get:166 http://deb.debian.org/debian bullseye/main amd64 python3-ptyprocess all 0.7.0-1 [13.6 kB] Get:167 http://deb.debian.org/debian bullseye/main amd64 python3-pexpect all 4.8.0-2 [54.9 kB] Get:168 http://deb.debian.org/debian bullseye/main amd64 python3-pickleshare all 0.7.5-3 [7604 B] Get:169 http://deb.debian.org/debian bullseye/main amd64 python3-wcwidth all 0.1.9+dfsg1-2 [18.2 kB] Get:170 http://deb.debian.org/debian bullseye/main amd64 python3-prompt-toolkit all 3.0.14-1 [258 kB] Get:171 http://deb.debian.org/debian bullseye/main amd64 python3-pygments all 2.7.1+dfsg-2.1 [657 kB] Get:172 http://deb.debian.org/debian bullseye/main amd64 python3-ipython-genutils all 0.2.0-4 [21.4 kB] Get:173 http://deb.debian.org/debian bullseye/main amd64 python3-traitlets all 5.0.5-1 [84.4 kB] Get:174 http://deb.debian.org/debian bullseye/main amd64 python3-ipython all 7.20.0-1+deb11u1 [517 kB] Get:175 http://deb.debian.org/debian bullseye/main amd64 python3-joblib all 0.17.0-4+deb11u1 [214 kB] Get:176 http://deb.debian.org/debian bullseye/main amd64 python3-kiwisolver amd64 1.3.1-1+b1 [55.7 kB] Get:177 http://deb.debian.org/debian bullseye/main amd64 python3-lockfile all 1:0.12.2-2.2 [17.3 kB] Get:178 http://deb.debian.org/debian bullseye/main amd64 python3-pil amd64 8.1.2+dfsg-0.3+deb11u1 [445 kB] Get:179 http://deb.debian.org/debian bullseye/main amd64 python3-matplotlib amd64 3.3.4-1 [4163 kB] Get:180 http://deb.debian.org/debian bullseye/main amd64 python3-natsort all 7.1.0-1 [37.5 kB] Get:181 http://deb.debian.org/debian bullseye/main amd64 python3-networkx all 2.5+ds-2 [900 kB] Get:182 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Get:183 http://deb.debian.org/debian bullseye/main amd64 python3-sklearn-lib amd64 0.23.2-5 [1884 kB] Get:184 http://deb.debian.org/debian bullseye/main amd64 python3-threadpoolctl all 2.1.0-1 [15.3 kB] Get:185 http://deb.debian.org/debian bullseye/main amd64 python3-sklearn all 0.23.2-5 [1818 kB] Get:186 http://deb.debian.org/debian bullseye/main amd64 python3-skbio amd64 0.5.6-4 [647 kB] Get:187 http://deb.debian.org/debian bullseye/main amd64 python3-tzlocal all 2.1-1 [18.5 kB] Get:188 http://deb.debian.org/debian bullseye/main amd64 python3-yaml amd64 5.3.1-5 [138 kB] Get:189 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biocgenerics all 0.36.0-1 [648 kB] Get:190 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgkitten all 0.2.1-1 [26.5 kB] Get:191 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcpp amd64 1.0.6-1 [2035 kB] Get:192 http://deb.debian.org/debian bullseye/main amd64 r-bioc-s4vectors amd64 0.28.1-1 [2027 kB] Get:193 http://deb.debian.org/debian bullseye/main amd64 r-bioc-iranges amd64 2.24.1-1 [2202 kB] Get:194 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2+deb11u2 [191 kB] Get:195 http://deb.debian.org/debian bullseye/main amd64 r-bioc-zlibbioc all 1.36.0+dfsg-1 [8824 B] Get:196 http://deb.debian.org/debian bullseye/main amd64 r-bioc-xvector amd64 0.30.0-1 [620 kB] Get:197 http://deb.debian.org/debian bullseye/main amd64 r-cran-crayon all 1.4.0-1 [143 kB] Get:198 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biostrings amd64 2.58.0-1 [14.2 MB] Get:199 http://deb.debian.org/debian bullseye/main amd64 r-cran-digest amd64 0.6.27-1 [192 kB] Get:200 http://deb.debian.org/debian bullseye/main amd64 r-cran-glue amd64 1.4.2-1 [138 kB] Get:201 http://deb.debian.org/debian bullseye/main amd64 r-cran-gtable all 0.3.0+dfsg-2 [163 kB] Get:202 http://deb.debian.org/debian bullseye/main amd64 r-cran-brio amd64 1.1.1-1 [31.7 kB] Get:203 http://deb.debian.org/debian bullseye/main amd64 r-cran-ps amd64 1.5.0-1 [277 kB] Get:204 http://deb.debian.org/debian bullseye/main amd64 r-cran-r6 all 2.5.0-1 [104 kB] Get:205 http://deb.debian.org/debian bullseye/main amd64 r-cran-processx amd64 3.4.5-1 [295 kB] Get:206 http://deb.debian.org/debian bullseye/main amd64 r-cran-callr all 3.5.1-1 [386 kB] Get:207 http://deb.debian.org/debian bullseye/main amd64 r-cran-assertthat all 0.2.1-2 [56.5 kB] Get:208 http://deb.debian.org/debian bullseye/main amd64 r-cran-cli all 2.3.0-1 [480 kB] Get:209 http://deb.debian.org/debian bullseye/main amd64 r-cran-rprojroot all 2.0.2-1 [114 kB] Get:210 http://deb.debian.org/debian bullseye/main amd64 r-cran-desc all 1.2.0-3 [301 kB] Get:211 http://deb.debian.org/debian bullseye/main amd64 r-cran-rlang amd64 0.4.10-1 [1176 kB] Get:212 http://deb.debian.org/debian bullseye/main amd64 r-cran-ellipsis amd64 0.3.1-1 [31.7 kB] Get:213 http://deb.debian.org/debian bullseye/main amd64 r-cran-evaluate all 0.14-2 [81.1 kB] Get:214 http://deb.debian.org/debian bullseye/main amd64 r-cran-jsonlite amd64 1.7.2+dfsg-1 [447 kB] Get:215 http://deb.debian.org/debian bullseye/main amd64 r-cran-lifecycle all 0.2.0-2 [93.2 kB] Get:216 http://deb.debian.org/debian bullseye/main amd64 r-cran-magrittr amd64 2.0.1-1 [198 kB] Get:217 http://deb.debian.org/debian bullseye/main amd64 r-cran-prettyunits all 1.1.1-2 [39.1 kB] Get:218 http://deb.debian.org/debian bullseye/main amd64 r-cran-withr all 2.4.1-1 [210 kB] Get:219 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgbuild all 1.2.0-1 [146 kB] Get:220 http://deb.debian.org/debian bullseye/main amd64 r-cran-rstudioapi all 0.13-1 [262 kB] Get:221 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgload amd64 1.1.0-1 [168 kB] Get:222 http://deb.debian.org/debian bullseye/main amd64 r-cran-praise all 1.0.0-4 [20.1 kB] Get:223 http://deb.debian.org/debian bullseye/main amd64 r-cran-diffobj amd64 0.3.2-1 [1069 kB] Get:224 http://deb.debian.org/debian bullseye/main amd64 r-cran-fansi amd64 0.4.2-1 [345 kB] Get:225 http://deb.debian.org/debian bullseye/main amd64 r-cran-utf8 amd64 1.1.4-2 [131 kB] Get:226 http://deb.debian.org/debian bullseye/main amd64 r-cran-vctrs amd64 0.3.6-1 [1107 kB] Get:227 http://deb.debian.org/debian bullseye/main amd64 r-cran-pillar all 1.4.7-1 [227 kB] Get:228 http://deb.debian.org/debian bullseye/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get:229 http://deb.debian.org/debian bullseye/main amd64 r-cran-tibble amd64 3.0.6+dfsg-1 [416 kB] Get:230 http://deb.debian.org/debian bullseye/main amd64 r-cran-rematch2 all 2.1.2-2 [46.3 kB] Get:231 http://deb.debian.org/debian bullseye/main amd64 r-cran-waldo all 0.2.3-2 [79.3 kB] Get:232 http://deb.debian.org/debian bullseye/main amd64 r-cran-testthat amd64 3.0.1-1 [1451 kB] Get:233 http://deb.debian.org/debian bullseye/main amd64 r-cran-isoband amd64 0.2.3-2 [2085 kB] Get:234 http://deb.debian.org/debian bullseye/main amd64 r-cran-mass amd64 7.3-53.1-1 [1115 kB] Get:235 http://deb.debian.org/debian bullseye/main amd64 r-cran-lattice amd64 0.20-41-1+b1 [1164 kB] Get:236 http://deb.debian.org/debian bullseye/main amd64 r-cran-nlme amd64 3.1.152-1 [2241 kB] Get:237 http://deb.debian.org/debian bullseye/main amd64 r-cran-matrix amd64 1.3-2-1 [3604 kB] Get:238 http://deb.debian.org/debian bullseye/main amd64 r-cran-mgcv amd64 1.8-34-1 [2998 kB] Get:239 http://deb.debian.org/debian bullseye/main amd64 r-cran-farver amd64 2.0.3-1+b1 [1393 kB] Get:240 http://deb.debian.org/debian bullseye/main amd64 r-cran-labeling all 0.4.2-1 [62.7 kB] Get:241 http://deb.debian.org/debian bullseye/main amd64 r-cran-colorspace amd64 2.0-0+dfsg-1 [1684 kB] Get:242 http://deb.debian.org/debian bullseye/main amd64 r-cran-munsell all 0.5.0-2 [236 kB] Get:243 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcolorbrewer all 1.1-2-3 [54.4 kB] Get:244 http://deb.debian.org/debian bullseye/main amd64 r-cran-viridislite all 0.3.0-4 [59.2 kB] Get:245 http://deb.debian.org/debian bullseye/main amd64 r-cran-scales all 1.1.1-1 [557 kB] Get:246 http://deb.debian.org/debian bullseye/main amd64 r-cran-ggplot2 all 3.3.3+dfsg-1 [3158 kB] Get:247 http://deb.debian.org/debian bullseye/main amd64 r-cran-plyr amd64 1.8.6-2 [830 kB] Get:248 http://deb.debian.org/debian bullseye/main amd64 r-cran-stringi amd64 1.5.3-1 [729 kB] Get:249 http://deb.debian.org/debian bullseye/main amd64 r-cran-stringr all 1.4.0-2 [199 kB] Get:250 http://deb.debian.org/debian bullseye/main amd64 r-cran-reshape2 amd64 1.4.4-2 [114 kB] Get:251 http://deb.debian.org/debian bullseye/main amd64 r-cran-formatr all 1.7-2 [151 kB] Get:252 http://deb.debian.org/debian bullseye/main amd64 r-cran-lambda.r all 1.2.4-2 [118 kB] Get:253 http://deb.debian.org/debian bullseye/main amd64 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get:254 http://deb.debian.org/debian bullseye/main amd64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get:255 http://deb.debian.org/debian bullseye/main amd64 r-cran-snow all 1:0.4.3-2 [109 kB] Get:256 http://deb.debian.org/debian bullseye/main amd64 r-cran-bh all 1.74.0-1 [5196 B] Get:257 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biocparallel amd64 1.24.1-1 [1143 kB] Get:258 http://deb.debian.org/debian bullseye/main amd64 r-cran-bitops amd64 1.0-6-5 [23.6 kB] Get:259 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcurl amd64 1.98-1.2-1+b1 [787 kB] Get:260 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomeinfodbdata all 1.2.4-1 [10.7 MB] Get:261 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomeinfodb all 1.26.2-2 [3905 kB] Get:262 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomicranges amd64 1.42.0+dfsg-1 [1856 kB] Get:263 http://deb.debian.org/debian bullseye/main amd64 r-bioc-rhtslib amd64 1.22.0+dfsg-1 [1024 kB] Get:264 http://deb.debian.org/debian bullseye/main amd64 r-bioc-rsamtools amd64 2.6.0-1 [3659 kB] Get:265 http://deb.debian.org/debian bullseye/main amd64 r-cran-matrixstats amd64 0.58.0-3 [664 kB] Get:266 http://deb.debian.org/debian bullseye/main amd64 r-bioc-matrixgenerics all 1.2.1-4 [288 kB] Get:267 http://deb.debian.org/debian bullseye/main amd64 r-bioc-biobase amd64 2.50.0-1 [2229 kB] Get:268 http://deb.debian.org/debian bullseye/main amd64 r-bioc-delayedarray amd64 0.16.1+dfsg-1 [1798 kB] Get:269 http://deb.debian.org/debian bullseye/main amd64 r-bioc-summarizedexperiment all 1.20.0+dfsg-1 [1955 kB] Get:270 http://deb.debian.org/debian bullseye/main amd64 r-bioc-genomicalignments amd64 1.26.0-1 [2196 kB] Get:271 http://deb.debian.org/debian bullseye/main amd64 r-cran-hwriter all 1.3.2-4 [162 kB] Get:272 http://deb.debian.org/debian bullseye/main amd64 r-cran-png amd64 0.1-7-4 [40.7 kB] Get:273 http://deb.debian.org/debian bullseye/main amd64 r-cran-jpeg amd64 0.1-8.1-1+b1 [30.3 kB] Get:274 http://deb.debian.org/debian bullseye/main amd64 r-cran-latticeextra all 0.6-29-3 [2192 kB] Get:275 http://deb.debian.org/debian bullseye/main amd64 r-bioc-shortread amd64 1.48.0-2 [5134 kB] Get:276 http://deb.debian.org/debian bullseye/main amd64 r-cran-rcppparallel amd64 5.0.2+dfsg-4 [115 kB] Get:277 http://deb.debian.org/debian bullseye/main amd64 r-bioc-dada2 amd64 1.18.0+dfsg-1 [1882 kB] Get:278 http://deb.debian.org/debian bullseye/main amd64 qiime all 2020.11.1-1 [150 kB] Get:279 http://deb.debian.org/debian bullseye/main amd64 q2-types all 2020.11.1-1 [59.3 kB] Get:280 http://deb.debian.org/debian bullseye/main amd64 q2-dada2 amd64 2020.11.1-3 [394 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 240 MB in 26s (9236 kB/s) Selecting previously unselected package perl-modules-5.32. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6672 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.32_5.32.1-4+deb11u3_all.deb ... Unpacking perl-modules-5.32 (5.32.1-4+deb11u3) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.19-2_amd64.deb ... Unpacking libgdbm6:amd64 (1.19-2) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../2-libgdbm-compat4_1.19-2_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.19-2) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../3-libperl5.32_5.32.1-4+deb11u3_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-4+deb11u3) ... Selecting previously unselected package perl. Preparing to unpack .../4-perl_5.32.1-4+deb11u3_amd64.deb ... Unpacking perl (5.32.1-4+deb11u3) ... Selecting previously unselected package libpython3.9-minimal:amd64. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../6-libexpat1_2.2.10-2+deb11u5_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2+deb11u5) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_amd64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:amd64 (3.9.2-1) ... Setting up libexpat1:amd64 (2.2.10-2+deb11u5) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8937 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.9.2-3_amd64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../02-mailcap_3.69_all.deb ... Unpacking mailcap (3.69) ... Selecting previously unselected package mime-support. Preparing to unpack .../03-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../04-libmpdec3_2.5.1-1_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-1) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../05-libncursesw6_6.2+20201114-2+deb11u2_amd64.deb ... Unpacking libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Selecting previously unselected package readline-common. Preparing to unpack .../06-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../07-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../08-libsqlite3-0_3.34.1-3_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.34.1-3) ... Selecting previously unselected package libpython3.9-stdlib:amd64. Preparing to unpack .../09-libpython3.9-stdlib_3.9.2-1_amd64.deb ... Unpacking libpython3.9-stdlib:amd64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../10-python3.9_3.9.2-1_amd64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../11-libpython3-stdlib_3.9.2-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9399 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_amd64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../001-libncurses6_6.2+20201114-2+deb11u2_amd64.deb ... Unpacking libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Selecting previously unselected package libprocps8:amd64. Preparing to unpack .../002-libprocps8_2%3a3.3.17-5_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a3.3.17-5_amd64.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_1.1.1w-0+deb11u1_amd64.deb ... Unpacking openssl (1.1.1w-0+deb11u1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../006-ca-certificates_20210119_all.deb ... Unpacking ca-certificates (20210119) ... Selecting previously unselected package ucf. Preparing to unpack .../007-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package cython3. Preparing to unpack .../008-cython3_0.29.21-3+b1_amd64.deb ... Unpacking cython3 (0.29.21-3+b1) ... 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Setting up libdeflate0:amd64 (1.7-1) ... Setting up linux-libc-dev:amd64 (5.10.209-2) ... Setting up libgomp1:amd64 (10.2.1-6) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libaec0:amd64 (1.0.4-1) ... Setting up libasan6:amd64 (10.2.1-6) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up zip (3.0-12) ... Setting up libblas3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libtirpc-dev:amd64 (1.3.1-1+deb11u1) ... Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up libx11-data (2:1.7.2-1+deb11u2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Setting up liblzf1:amd64 (3.6-3) ... Setting up libfribidi0:amd64 (1.0.8-2+deb11u1) ... Setting up libquadmath0:amd64 (10.2.1-6) ... 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Setting up python-matplotlib-data (3.3.4-1) ... Setting up openssl (1.1.1w-0+deb11u1) ... Setting up libwebpmux3:amd64 (0.6.1-2.1+deb11u2) ... Setting up libbsd0:amd64 (0.11.3-1+deb11u1) ... Setting up libssw0:amd64 (1.1-13) ... Setting up readline-common (8.1-1) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liblsan0:amd64 (10.2.1-6) ... Setting up libprocps8:amd64 (2:3.3.17-5) ... Setting up libsz2:amd64 (1.0.4-1) ... Setting up libitm1:amd64 (10.2.1-6) ... Setting up libgdbm6:amd64 (1.19-2) ... Setting up libtsan0:amd64 (10.2.1-6) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3) ... 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Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libjs-jquery-ui (1.12.1+dfsg-8+deb11u2) ... Setting up libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Setting up libgdbm-compat4:amd64 (1.19-2) ... Setting up ucf (3.0043) ... Setting up libperl5.32:amd64 (5.32.1-4+deb11u3) ... Setting up libhdf5-103-1:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libopenblas0:amd64 (0.3.13+ds-3+deb11u1) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:amd64 (7.74.0-1.3+deb11u11) ... Setting up libc6-dev:amd64 (2.31-13+deb11u8) ... Setting up libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Setting up libharfbuzz0b:amd64 (2.7.4-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Setting up libhdf5-hl-100:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libopenblas-base:amd64 (0.3.13+ds-3+deb11u1) ... Setting up libpaper1:amd64 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up libstdc++-10-dev:amd64 (10.2.1-6) ... Setting up libboost1.74-dev:amd64 (1.74.0-9) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up libxext6:amd64 (2:1.3.3-1.1) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up perl (5.32.1-4+deb11u3) ... Setting up libxt6:amd64 (1:1.2.0-1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u2) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up mailcap (3.69) ... Setting up python3.9 (3.9.2-1) ... Setting up r-cran-bh (1.74.0-1) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.2-2) ... Setting up mime-support (3.66) ... Setting up libtk8.6:amd64 (8.6.11-2) ... Setting up libpango-1.0-0:amd64 (1.46.2-3) ... 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Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-prompt-toolkit (3.0.14-1) ... Setting up python3-distutils (3.9.2-1) ... Setting up python3-lockfile (1:0.12.2-2.2) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-backcall (0.2.0-1) ... Setting up python3-ijson (3.1.4-1) ... Setting up python3-joblib (0.17.0-4+deb11u1) ... Setting up python3-parso (0.8.1-1) ... Setting up python3-colorama (0.4.4-1) ... Setting up python3-ipython-genutils (0.2.0-4) ... Setting up python3-threadpoolctl (2.1.0-1) ... Setting up python3-yaml (5.3.1-5) ... Setting up python3-click (7.1.2-1) ... Setting up python3-networkx (2.5+ds-2) ... Setting up python3-pygments (2.7.1+dfsg-2.1) ... Setting up python3-chardet (4.0.0-1) ... Setting up python3-pexpect (4.8.0-2) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up r-base-core (4.0.4-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.4.0-1) ... 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Setting up r-bioc-s4vectors (0.28.1-1) ... Setting up r-cran-futile.logger (1.4.3-4) ... Setting up python3-h5py (2.10.0-9) ... Setting up python3-sklearn (0.23.2-5) ... Setting up r-cran-matrix (1.3-2-1) ... Setting up r-cran-mgcv (1.8-34-1) ... Setting up r-bioc-iranges (2.24.1-1) ... Setting up python3-bibtexparser (1.1.0+ds-3) ... Setting up r-cran-rcurl (1.98-1.2-1+b1) ... Setting up r-bioc-delayedarray (0.16.1+dfsg-1) ... Setting up r-cran-ellipsis (0.3.1-1) ... Setting up r-cran-stringr (1.4.0-2) ... Setting up r-bioc-biocparallel (1.24.1-1) ... Setting up r-cran-callr (3.5.1-1) ... Setting up r-bioc-rhtslib (1.22.0+dfsg-1) ... Setting up r-cran-desc (1.2.0-3) ... Setting up r-cran-munsell (0.5.0-2) ... Setting up r-cran-latticeextra (0.6-29-3) ... Setting up qiime (2020.11.1-1) ... Setting up r-cran-reshape2 (1.4.4-2) ... Setting up python3-biom-format (2.1.10-1+b1) ... Setting up r-bioc-genomeinfodb (1.26.2-2) ... Setting up python3-skbio (0.5.6-4) ... Setting up q2-types (2020.11.1-1) ... Setting up r-cran-scales (1.1.1-1) ... Setting up r-bioc-xvector (0.30.0-1) ... Setting up r-cran-pkgbuild (1.2.0-1) ... Setting up r-cran-vctrs (0.3.6-1) ... Setting up r-cran-pillar (1.4.7-1) ... Setting up r-cran-pkgload (1.1.0-1) ... Setting up r-bioc-genomicranges (1.42.0+dfsg-1) ... Setting up r-bioc-biostrings (2.58.0-1) ... Setting up r-cran-tibble (3.0.6+dfsg-1) ... Setting up r-bioc-rsamtools (2.6.0-1) ... Setting up r-bioc-summarizedexperiment (1.20.0+dfsg-1) ... Setting up r-cran-rematch2 (2.1.2-2) ... Setting up r-cran-waldo (0.2.3-2) ... Setting up r-bioc-genomicalignments (1.26.0-1) ... Setting up r-cran-testthat (3.0.1-1) ... Setting up r-cran-isoband (0.2.3-2) ... Setting up r-bioc-shortread (1.48.0-2) ... Setting up r-cran-ggplot2 (3.3.3+dfsg-1) ... Setting up r-bioc-dada2 (1.18.0+dfsg-1) ... Setting up q2-dada2 (2020.11.1-3) ... Processing triggers for libc-bin (2.31-13+deb11u8) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m51.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-get', '-y', 'install', 'q2-dada2'] 1m51.1s INFO: Running scripts post_install 1m51.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_install_exceptions'] 1m51.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_install_exceptions'] 1m51.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp477gc8r'] 1m53.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp477gc8r'] 1m53.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpp477gc8r to sid 1m53.3s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 1m53.3s INFO: Running scripts pre_distupgrade 1m53.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m53.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m53.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_distupgrade_exceptions'] 1m53.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_distupgrade_exceptions'] 1m53.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m53.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m53.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m53.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m53.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m53.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m53.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-get', 'update'] 1m57.6s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9741 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7146 kB] Fetched 17.1 MB in 3s (5378 kB/s) Reading package lists... 1m57.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-get', 'update'] 1m57.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-get', '-yf', 'dist-upgrade'] 5m14.4s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: cython3 gcc-11-base libasan6 libgcc-10-dev libicu67 libldap-2.4-2 libmpdec3 libncurses6 libopenblas-base libperl5.32 libproc2-0 libprocps8 libpython3.9-minimal libpython3.9-stdlib libstdc++-10-dev libtiff5 libtsan0 libwebp6 perl-modules-5.32 procps python3-backcall python3-cachecontrol python3-future python3-ipython-genutils python3-joblib python3-lockfile python3-msgpack python3-pickleshare python3-sklearn python3-sklearn-lib python3-threadpoolctl python3.9 python3.9-minimal r-cran-assertthat r-cran-ellipsis r-cran-prettyunits Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libboost1.74-dev libsemanage1 libtbb2 The following NEW packages will be installed: blt fonts-dejavu-mono fonts-glyphicons-halflings gcc-11-base gcc-13-base gcc-14-base javascript-common libasan8 libboost1.83-dev libcap2 libffi8 libfile-find-rule-perl libgcc-13-dev libhwasan0 libhwloc15 libicu72 libjs-bootstrap libjs-popper.js libldap-2.5-0 liblerc4 libnorm1 libnumber-compare-perl libopenjp2-7 libperl5.38 libpgm-5.3-0 libproc2-0 libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libqhull-r8.0 libraqm0 libsemanage2 libsepol2 libsharpyuv0 libsodium23 libssl3 libstdc++-13-dev libtbb12 libtbbbind-2-5 libtbbmalloc2 libtext-glob-perl libtiff6 libtsan2 libunistring5 libuv1 libwebp7 libxml2 libxslt1.1 libzmq5 netbase node-fortawesome-fontawesome-free perl-modules-5.38 python3-appdirs python3-asttokens python3-attr python3-bcrypt python3-blinker python3-brotli python3-cffi-backend python3-charset-normalizer python3-contourpy python3-cryptography python3-dill python3-executing python3-flask python3-flask-sqlalchemy python3-flufl.lock python3-fonttools python3-fs python3-globus-sdk python3-greenlet python3-itsdangerous python3-jinja2 python3-jwt python3-lxml python3-lz4 python3-markupsafe python3-matplotlib-inline python3-mpmath python3-nacl python3-packaging python3-paramiko python3-parsl python3-pil.imagetk python3-psutil python3-public python3-pure-eval python3-py python3-setproctitle python3-sqlalchemy python3-stack-data python3-sympy python3-tblib python3-tk python3-tomlkit python3-typeguard python3-typeshed python3-typing-extensions python3-ufolib2 python3-unicodedata2 python3-werkzeug python3-zmq python3.11 python3.11-minimal python3.12 python3.12-minimal r-bioc-s4arrays r-bioc-sparsearray r-cran-abind r-cran-codetools r-cran-cpp11 r-cran-deldir r-cran-fs r-cran-getopt r-cran-interp r-cran-optparse r-cran-rcppeigen rpcsvc-proto tk8.6-blt2.5 unicode-data usrmerge The following packages will be upgraded: adduser apt base-files base-passwd bash bsdutils ca-certificates coreutils cython3 dash debconf debian-archive-keyring debianutils diffutils dpkg e2fsprogs findutils fontconfig fontconfig-config fonts-dejavu-core fonts-lyx gcc-10-base gcc-9-base gpgv grep gzip hostname init-system-helpers libacl1 libaec0 libapt-pkg6.0 libasan6 libatomic1 libattr1 libaudit-common libaudit1 libblas3 libblkid1 libboost-dev libbrotli1 libbsd0 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcairo2 libcap-ng0 libcom-err2 libcrypt-dev libcrypt1 libcurl4 libdatrie1 libdb5.3 libdebconfclient0 libdeflate0 libexpat1 libext2fs2 libfontconfig1 libfreetype6 libfribidi0 libgcc-10-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgfortran5 libglib2.0-0 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libhogweed6 libidn2-0 libimagequant0 libitm1 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 liblsan0 liblz4-1 liblzf1 liblzma5 libmd0 libmount1 libmpdec3 libncurses6 libncursesw6 libnettle8 libnghttp2-14 libnsl-dev libnsl2 libopenblas0 libopenblas0-pthread libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-8-0 libpcre3 libpixman-1-0 libpng16-16 libpsl5 libpython3-stdlib libquadmath0 libreadline8 libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libssh2-1 libssw0 libstdc++-10-dev libstdc++6 libsystemd0 libsz2 libtasn1-6 libtbb-dev libtcl8.6 libthai-data libthai0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtk8.6 libtsan0 libubsan1 libudev1 libuuid1 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxcb-render0 libxcb-shm0 libxcb1 libxext6 libxft2 libxrender1 libxt6 libxxhash0 libyajl2 libyaml-0-2 libzstd1 linux-libc-dev littler login logsave lsb-base mailcap mawk media-types mount ncurses-base ncurses-bin openssl passwd perl perl-base procps python-matplotlib-data python3 python3-backcall python3-bibtexparser python3-biom-format python3-cachecontrol python3-certifi python3-chardet python3-click python3-colorama python3-cycler python3-dateutil python3-decorator python3-distutils python3-future python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-ijson python3-ipython python3-ipython-genutils python3-jedi python3-joblib python3-kiwisolver python3-lib2to3 python3-lockfile python3-matplotlib python3-minimal python3-msgpack python3-natsort python3-networkx python3-numpy python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pickleshare python3-pil python3-pkg-resources python3-prompt-toolkit python3-ptyprocess python3-pygments python3-pyparsing python3-requests python3-scipy python3-setuptools python3-six python3-skbio python3-sklearn python3-sklearn-lib python3-threadpoolctl python3-traitlets python3-tz python3-tzlocal python3-urllib3 python3-wcwidth python3-yaml q2-dada2 q2-types qiime r-base-core r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-dada2 r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4vectors r-bioc-shortread r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-bh r-cran-bitops r-cran-brio r-cran-callr r-cran-cli r-cran-colorspace r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-formatr r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-hwriter r-cran-isoband r-cran-jpeg r-cran-jsonlite r-cran-labeling r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-nlme r-cran-pillar r-cran-pkgbuild r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-png r-cran-prettyunits r-cran-processx r-cran-ps r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppparallel r-cran-rcurl r-cran-rlang r-cran-rprojroot r-cran-rstudioapi r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-testthat r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr readline-common sed sensible-utils sysvinit-utils tar ttf-bitstream-vera tzdata ucf unzip util-linux x11-common zip zlib1g zlib1g-dev 340 upgraded, 122 newly installed, 3 to remove and 0 not upgraded. Need to get 379 MB of archives. After this operation, 673 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 base-files amd64 13 [70.6 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libnsl-dev amd64 1.3.0-3 [66.9 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.36-4 [119 kB] Get:4 http://deb.debian.org/debian sid/main amd64 libc6-dev amd64 2.37-15 [1906 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libc-dev-bin amd64 2.37-15 [46.9 kB] Get:6 http://deb.debian.org/debian sid/main amd64 rpcsvc-proto amd64 1.4.3-1 [63.3 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1 [10.7 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libtirpc-dev amd64 1.3.4+ds-1 [188 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.20.1-5+b1 [135 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.20.1-5+b1 [333 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.20.1-5+b1 [80.0 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.20.1-5+b1 [33.2 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.37-15 [2750 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.37-15 [602 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libssl3 amd64 3.1.5-1 [2063 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.0-2+b1 [20.1 kB] Get:17 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:18 http://deb.debian.org/debian sid/main amd64 libtirpc3 amd64 1.3.4+ds-1 [82.1 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-3 [40.0 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:3.1.2-2 [11.3 kB] Get:21 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.8.4-2 [16.9 kB] Get:22 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:3.1.2-2 [48.4 kB] Get:23 http://deb.debian.org/debian sid/main amd64 perl-modules-5.38 all 5.38.2-3 [2899 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libgdbm6 amd64 1.23-5+b1 [72.8 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libperl5.38 amd64 5.38.2-3 [4275 kB] Get:26 http://deb.debian.org/debian sid/main amd64 perl amd64 5.38.2-3 [236 kB] Get:27 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.38.2-3 [1643 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libbz2-1.0 amd64 1.0.8-5+b2 [38.2 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libdb5.3 amd64 5.3.28+dfsg2-4+b1 [697 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4 amd64 1.23-5+b1 [48.5 kB] Get:31 http://deb.debian.org/debian sid/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3+b1 [919 kB] Get:32 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.3.dfsg-3+b1 [87.8 kB] Get:33 http://deb.debian.org/debian sid/main amd64 debconf all 1.5.86 [119 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.5.2-9.1+b1 [65.8 kB] Get:35 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.36-4 [89.8 kB] Get:36 http://deb.debian.org/debian sid/main amd64 linux-libc-dev all 6.6.15-2 [2247 kB] Get:37 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14-20240201-3 [42.3 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14-20240201-3 [71.6 kB] Get:39 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.39.3-6 [159 kB] Get:40 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.42-4 [261 kB] Get:41 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.5-2 [74.8 kB] Get:42 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.39.3-6 [190 kB] Get:43 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.39.3-6 [117 kB] Get:44 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.13+dfsg1-4 [616 kB] Get:45 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.39.3-6 [1230 kB] Get:46 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.4.5-0.3 [240 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.5+dfsg2-2 [295 kB] Get:48 http://deb.debian.org/debian sid/main amd64 tar amd64 1.35+dfsg-3 [813 kB] Get:49 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.22.4 [1509 kB] Get:50 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.08-6 [32.1 kB] Get:51 http://deb.debian.org/debian sid/main amd64 lsb-base all 11.6 [4584 B] Get:52 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+23 [252 kB] Get:53 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.16 [88.9 kB] Get:54 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2.21-2 [1492 kB] Get:55 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.39.3-6 [96.9 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2+b1 [559 kB] Get:57 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.4-3+b1 [2950 kB] Get:58 http://deb.debian.org/debian sid/main amd64 dash amd64 0.5.12-6 [92.1 kB] Get:59 http://deb.debian.org/debian sid/main amd64 diffutils amd64 1:3.10-1 [375 kB] Get:60 http://deb.debian.org/debian sid/main amd64 findutils amd64 4.9.0-5 [636 kB] Get:61 http://deb.debian.org/debian sid/main amd64 grep amd64 3.11-4 [431 kB] Get:62 http://deb.debian.org/debian sid/main amd64 gzip amd64 1.12-1 [140 kB] Get:63 http://deb.debian.org/debian sid/main amd64 hostname amd64 3.23+nmu2 [10.6 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libncurses6 amd64 6.4+20240113-1 [104 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.4+20240113-1 [135 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.4+20240113-1 [342 kB] Get:67 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.4+20240113-1 [431 kB] Get:68 http://deb.debian.org/debian sid/main amd64 sed amd64 4.9-2 [329 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.271 [9940 B] Get:70 http://deb.debian.org/debian sid/main amd64 base-passwd amd64 3.6.3 [50.8 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.47-3 [77.8 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.10.3-2 [708 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14-20240201-3 [714 kB] Get:74 http://deb.debian.org/debian sid/main amd64 liblz4-1 amd64 1.9.4-1+b2 [61.6 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.66-5 [27.4 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 255.3-2 [362 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 255.3-2 [124 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.2-2+b1 [26.6 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0 amd64 2.7.11 [981 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libnettle8 amd64 3.9.1-2 [295 kB] Get:81 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.4-2 [23.5 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.3-4 [418 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.1-2 [421 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libhogweed6 amd64 3.9.1-2 [327 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.7-2 [128 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.19.0-3+b2 [48.9 kB] Get:87 http://deb.debian.org/debian sid/main amd64 libgnutls30 amd64 3.8.3-1 [1425 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.5-1 [9908 B] Get:89 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.5-2 [277 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.5-1+b2 [90.3 kB] Get:91 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.13+dfsg1-4 [973 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.5.2-9.1+b1 [50.1 kB] Get:93 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.5.2-9.1+b1 [265 kB] Get:94 http://deb.debian.org/debian sid/main amd64 adduser all 3.137 [140 kB] Get:95 http://deb.debian.org/debian sid/main amd64 gpgv amd64 2.2.40-1.1+b1 [649 kB] Get:96 http://deb.debian.org/debian sid/main amd64 debian-archive-keyring all 2023.4 [161 kB] Get:97 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.5.5-1 [47.0 kB] Get:98 http://deb.debian.org/debian sid/main amd64 apt amd64 2.7.11 [1364 kB] Get:99 http://deb.debian.org/debian sid/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:100 http://deb.debian.org/debian sid/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:101 http://deb.debian.org/debian sid/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get:102 http://deb.debian.org/debian sid/main amd64 usrmerge all 39 [13.1 kB] Get:103 http://deb.debian.org/debian sid/main amd64 init-system-helpers all 1.66 [39.0 kB] Get:104 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.4+20240113-1 [268 kB] Get:105 http://deb.debian.org/debian sid/main amd64 gcc-13-base amd64 13.2.0-13 [42.5 kB] Get:106 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14-20240201-3 [136 kB] Get:107 http://deb.debian.org/debian sid/main amd64 libitm1 amd64 14-20240201-3 [25.8 kB] Get:108 http://deb.debian.org/debian sid/main amd64 libatomic1 amd64 14-20240201-3 [9292 B] Get:109 http://deb.debian.org/debian sid/main amd64 libasan8 amd64 14-20240201-3 [2721 kB] Get:110 http://deb.debian.org/debian sid/main amd64 liblsan0 amd64 14-20240201-3 [1199 kB] Get:111 http://deb.debian.org/debian sid/main amd64 libtsan2 amd64 14-20240201-3 [2454 kB] Get:112 http://deb.debian.org/debian sid/main amd64 libubsan1 amd64 14-20240201-3 [1070 kB] Get:113 http://deb.debian.org/debian sid/main amd64 libhwasan0 amd64 14-20240201-3 [1484 kB] Get:114 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 14-20240201-3 [147 kB] Get:115 http://deb.debian.org/debian sid/main amd64 libgcc-13-dev amd64 13.2.0-13 [2538 kB] Get:116 http://deb.debian.org/debian sid/main amd64 libstdc++-13-dev amd64 13.2.0-13 [2208 kB] Get:117 http://deb.debian.org/debian sid/main amd64 libboost-dev amd64 1.83.0.2 [3552 B] Get:118 http://deb.debian.org/debian sid/main amd64 libboost1.83-dev amd64 1.83.0-2+b2 [10.6 MB] Get:119 http://deb.debian.org/debian sid/main amd64 libtbb-dev amd64 2021.11.0-2 [193 kB] Get:120 http://deb.debian.org/debian sid/main amd64 r-cran-rcppparallel amd64 5.1.7+dfsg-3 [305 kB] Get:121 http://deb.debian.org/debian sid/main amd64 r-bioc-dada2 amd64 1.30.0+dfsg-1 [2805 kB] Get:122 http://deb.debian.org/debian sid/main amd64 libtbbmalloc2 amd64 2021.11.0-2 [48.6 kB] Get:123 http://deb.debian.org/debian sid/main amd64 libhwloc15 amd64 2.10.0-1+b1 [161 kB] Get:124 http://deb.debian.org/debian sid/main amd64 libtbbbind-2-5 amd64 2021.11.0-2 [14.1 kB] Get:125 http://deb.debian.org/debian sid/main amd64 libtbb12 amd64 2021.11.0-2 [87.6 kB] Get:126 http://deb.debian.org/debian sid/main amd64 r-cran-ps amd64 1.7.6-1 [310 kB] Get:127 http://deb.debian.org/debian sid/main amd64 r-cran-rlang amd64 1.1.3-1 [1669 kB] Get:128 http://deb.debian.org/debian sid/main amd64 r-cran-cli amd64 3.6.2-1 [1325 kB] Get:129 http://deb.debian.org/debian sid/main amd64 r-cran-fansi amd64 1.0.5-1 [621 kB] Get:130 http://deb.debian.org/debian sid/main amd64 r-cran-glue amd64 1.7.0-1 [157 kB] Get:131 http://deb.debian.org/debian sid/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get:132 http://deb.debian.org/debian sid/main amd64 r-cran-utf8 amd64 1.2.4-1 [133 kB] Get:133 http://deb.debian.org/debian sid/main amd64 r-cran-vctrs amd64 0.6.5-1 [1375 kB] Get:134 http://deb.debian.org/debian sid/main amd64 r-cran-pillar all 1.9.0+dfsg-1 [463 kB] Get:135 http://deb.debian.org/debian sid/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB] Get:136 http://deb.debian.org/debian sid/main amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [420 kB] Get:137 http://deb.debian.org/debian sid/main amd64 zip amd64 3.0-13 [230 kB] Get:138 http://deb.debian.org/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:139 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get:140 http://deb.debian.org/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:141 http://deb.debian.org/debian sid/main amd64 libpaper1 amd64 1.1.29 [12.5 kB] Get:142 http://deb.debian.org/debian sid/main amd64 libpaper-utils amd64 1.1.29 [8868 B] Get:143 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14-20240201-3 [836 kB] Get:144 http://deb.debian.org/debian sid/main amd64 libopenblas0-pthread amd64 0.3.26+ds-1 [6807 kB] Get:145 http://deb.debian.org/debian sid/main amd64 libopenblas0 amd64 0.3.26+ds-1 [37.5 kB] Get:146 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get:147 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:148 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:149 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-1 [317 kB] Get:150 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.0-1 [101 kB] Get:151 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:152 http://deb.debian.org/debian sid/main amd64 libpng16-16 amd64 1.6.42-1 [277 kB] Get:153 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b1 [439 kB] Get:154 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-1 [388 kB] Get:155 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB] Get:156 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:157 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:158 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.7-1 [802 kB] Get:159 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get:160 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get:161 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:162 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:163 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.0-1+b1 [531 kB] Get:164 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-4+b1 [19.7 kB] Get:165 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-4+b1 [57.0 kB] Get:166 http://deb.debian.org/debian sid/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5+b3 [184 kB] Get:167 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.59.0-1 [74.3 kB] Get:168 http://deb.debian.org/debian sid/main amd64 libpsl5 amd64 0.21.2-1+b1 [59.1 kB] Get:169 http://deb.debian.org/debian sid/main amd64 libssh2-1 amd64 1.11.0-4 [215 kB] Get:170 http://deb.debian.org/debian sid/main amd64 libcurl4 amd64 8.6.0-2 [431 kB] Get:171 http://deb.debian.org/debian sid/main amd64 libglib2.0-0 amd64 2.78.4-1 [1452 kB] Get:172 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:173 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-2+b2 [167 kB] Get:174 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get:175 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get:176 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 8.3.0-2 [2213 kB] Get:177 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [35.1 kB] Get:178 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [215 kB] Get:179 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [47.3 kB] Get:180 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.15.0-1 [462 kB] Get:181 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get:182 http://deb.debian.org/debian sid/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:183 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB] Get:184 http://deb.debian.org/debian sid/main amd64 libthai0 amd64 0.1.29-2 [49.1 kB] Get:185 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-3 [69.1 kB] Get:186 http://deb.debian.org/debian sid/main amd64 libreadline8 amd64 8.2-3 [167 kB] Get:187 http://deb.debian.org/debian sid/main amd64 tzdata all 2024a-1 [255 kB] Get:188 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2+b1 [1033 kB] Get:189 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.19-1 [41.4 kB] Get:190 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get:191 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get:192 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [108 kB] Get:193 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.3.2-0.4 [308 kB] Get:194 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get:195 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b1 [54.2 kB] Get:196 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.13-2+b1 [783 kB] Get:197 http://deb.debian.org/debian sid/main amd64 libxt6 amd64 1:1.2.1-1.1 [186 kB] Get:198 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.1.5-1 [1241 kB] Get:199 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:200 http://deb.debian.org/debian sid/main amd64 r-base-core amd64 4.3.2-1 [26.8 MB] Get:201 http://deb.debian.org/debian sid/main amd64 r-bioc-biobase amd64 2.62.0-1 [2119 kB] Get:202 http://deb.debian.org/debian sid/main amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9344 B] Get:203 http://deb.debian.org/debian sid/main amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2062 kB] Get:204 http://deb.debian.org/debian sid/main amd64 r-bioc-iranges amd64 2.36.0-1 [2258 kB] Get:205 http://deb.debian.org/debian sid/main amd64 r-bioc-xvector amd64 0.42.0-1 [622 kB] Get:206 http://deb.debian.org/debian sid/main amd64 r-cran-matrixstats amd64 1.2.0-1 [484 kB] Get:207 http://deb.debian.org/debian sid/main amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] Get:208 http://deb.debian.org/debian sid/main amd64 r-cran-bitops amd64 1.0-7-1 [30.2 kB] Get:209 http://deb.debian.org/debian sid/main amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [786 kB] Get:210 http://deb.debian.org/debian sid/main amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] Get:211 http://deb.debian.org/debian sid/main amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3848 kB] Get:212 http://deb.debian.org/debian sid/main amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1827 kB] Get:213 http://deb.debian.org/debian sid/main amd64 r-cran-lattice amd64 0.22-5-1 [1394 kB] Get:214 http://deb.debian.org/debian sid/main amd64 r-cran-matrix amd64 1.6-5-1 [3789 kB] Get:215 http://deb.debian.org/debian sid/main amd64 r-cran-abind all 1.4-5-2 [64.6 kB] Get:216 http://deb.debian.org/debian sid/main amd64 r-cran-crayon all 1.5.2-1 [165 kB] Get:217 http://deb.debian.org/debian sid/main amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [504 kB] Get:218 http://deb.debian.org/debian sid/main amd64 r-bioc-sparsearray amd64 1.2.3+dfsg-1 [1196 kB] Get:219 http://deb.debian.org/debian sid/main amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1794 kB] Get:220 http://deb.debian.org/debian sid/main amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1139 kB] Get:221 http://deb.debian.org/debian sid/main amd64 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get:222 http://deb.debian.org/debian sid/main amd64 r-cran-codetools all 0.2-19-1 [90.9 kB] Get:223 http://deb.debian.org/debian sid/main amd64 r-cran-bh all 1.84.0-1 [5912 B] Get:224 http://deb.debian.org/debian sid/main amd64 r-cran-cpp11 all 0.4.7-1 [219 kB] Get:225 http://deb.debian.org/debian sid/main amd64 r-bioc-biocparallel amd64 1.36.0-1 [1337 kB] Get:226 http://deb.debian.org/debian sid/main amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.7 MB] Get:227 http://deb.debian.org/debian sid/main amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-2 [1284 kB] Get:228 http://deb.debian.org/debian sid/main amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3580 kB] Get:229 http://deb.debian.org/debian sid/main amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2144 kB] Get:230 http://deb.debian.org/debian sid/main amd64 r-cran-hwriter all 1.3.2.1-1 [110 kB] Get:231 http://deb.debian.org/debian sid/main amd64 r-cran-png amd64 0.1-8-1 [41.1 kB] Get:232 http://deb.debian.org/debian sid/main amd64 r-cran-jpeg amd64 0.1-10-1 [30.8 kB] Get:233 http://deb.debian.org/debian sid/main amd64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get:234 http://deb.debian.org/debian sid/main amd64 r-cran-littler amd64 0.3.19-1 [99.8 kB] Get:235 http://deb.debian.org/debian sid/main amd64 littler all 0.3.19-1 [15.4 kB] Get:236 http://deb.debian.org/debian sid/main amd64 r-cran-pkgkitten all 0.2.3-1 [26.7 kB] Get:237 http://deb.debian.org/debian sid/main amd64 r-cran-rcpp amd64 1.0.12-1 [2071 kB] Get:238 http://deb.debian.org/debian sid/main amd64 r-cran-deldir amd64 2.0-2-1 [285 kB] Get:239 http://deb.debian.org/debian sid/main amd64 r-cran-rcppeigen amd64 0.3.3.9.4-1 [1177 kB] Get:240 http://deb.debian.org/debian sid/main amd64 r-cran-interp amd64 1.1-6-1 [1445 kB] Get:241 http://deb.debian.org/debian sid/main amd64 r-cran-mass amd64 7.3-60.0.1-1 [1118 kB] Get:242 http://deb.debian.org/debian sid/main amd64 r-cran-latticeextra all 0.6-30-1 [2194 kB] Get:243 http://deb.debian.org/debian sid/main amd64 r-bioc-shortread amd64 1.60.0-2 [5190 kB] Get:244 http://deb.debian.org/debian sid/main amd64 r-bioc-biocgenerics all 0.48.1-2 [597 kB] Get:245 http://deb.debian.org/debian sid/main amd64 r-cran-gtable all 0.3.4+dfsg-1 [221 kB] Get:246 http://deb.debian.org/debian sid/main amd64 r-cran-isoband amd64 0.2.7-1 [1614 kB] Get:247 http://deb.debian.org/debian sid/main amd64 r-cran-nlme amd64 3.1.164-1 [2280 kB] Get:248 http://deb.debian.org/debian sid/main amd64 r-cran-mgcv amd64 1.9-1-1 [3233 kB] Get:249 http://deb.debian.org/debian sid/main amd64 r-cran-farver amd64 2.1.1-1 [1404 kB] Get:250 http://deb.debian.org/debian sid/main amd64 r-cran-labeling all 0.4.3-1 [62.4 kB] Get:251 http://deb.debian.org/debian sid/main amd64 r-cran-r6 all 2.5.1-1 [105 kB] Get:252 http://deb.debian.org/debian sid/main amd64 r-cran-viridislite all 0.4.2-2 [1299 kB] Get:253 http://deb.debian.org/debian sid/main amd64 r-cran-scales all 1.3.0-1 [677 kB] Get:254 http://deb.debian.org/debian sid/main amd64 r-cran-withr all 3.0.0+dfsg-1 [240 kB] Get:255 http://deb.debian.org/debian sid/main amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3405 kB] Get:256 http://deb.debian.org/debian sid/main amd64 logsave amd64 1.47.0-2+b1 [19.9 kB] Get:257 http://deb.debian.org/debian sid/main amd64 libext2fs2 amd64 1.47.0-2+b1 [205 kB] Get:258 http://deb.debian.org/debian sid/main amd64 e2fsprogs amd64 1.47.0-2+b1 [572 kB] Get:259 http://deb.debian.org/debian sid/main amd64 mount amd64 2.39.3-6 [143 kB] Get:260 http://deb.debian.org/debian sid/main amd64 libpython3.11-minimal amd64 3.11.8-1 [817 kB] Get:261 http://deb.debian.org/debian sid/main amd64 python3.11-minimal amd64 3.11.8-1 [2037 kB] Get:262 http://deb.debian.org/debian sid/main amd64 python3-yaml amd64 6.0.1-2 [177 kB] Get:263 http://deb.debian.org/debian sid/main amd64 python3-sklearn-lib amd64 1.4.1.post1+dfsg-1 [6611 kB] Get:264 http://deb.debian.org/debian sid/main amd64 python3-biom-format amd64 2.1.15.2-3 [182 kB] Get:265 http://deb.debian.org/debian sid/main amd64 q2-types all 2024.2.0-1 [5468 kB] Get:266 http://deb.debian.org/debian sid/main amd64 python3-skbio amd64 0.5.9-4 [875 kB] Get:267 http://deb.debian.org/debian sid/main amd64 python3-pandas all 2.1.4+dfsg-4 [3015 kB] Get:268 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.11.4-3 [19.5 MB] Get:269 http://deb.debian.org/debian sid/main amd64 python3-pil amd64 10.2.0-1 [525 kB] Get:270 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 2.1.4+dfsg-4 [7886 kB] Get:271 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.24.2-2 [6299 kB] Get:272 http://deb.debian.org/debian sid/main amd64 python3-msgpack amd64 1.0.3-3+b1 [96.5 kB] Get:273 http://deb.debian.org/debian sid/main amd64 python3-matplotlib amd64 3.6.3-1+b2 [8166 kB] Get:274 http://deb.debian.org/debian sid/main amd64 python3-kiwisolver amd64 1.4.4-1+b2 [80.3 kB] Get:275 http://deb.debian.org/debian sid/main amd64 python3-ijson amd64 3.2.3-1 [38.0 kB] Get:276 http://deb.debian.org/debian sid/main amd64 python3-hdmedians amd64 0.14.2-5.1 [170 kB] Get:277 http://deb.debian.org/debian sid/main amd64 python3-h5py-serial amd64 3.10.0-1 [1399 kB] Get:278 http://deb.debian.org/debian sid/main amd64 cython3 amd64 3.0.8-1 [6641 kB] Get:279 http://deb.debian.org/debian sid/main amd64 python3-distutils all 3.11.5-1 [131 kB] Get:280 http://deb.debian.org/debian sid/main amd64 python3-lib2to3 all 3.11.5-1 [77.5 kB] Get:281 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.11.6-1 [26.2 kB] Get:282 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.11.6-1 [26.2 kB] Get:283 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:284 http://deb.debian.org/debian sid/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get:285 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get:286 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:287 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:288 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.45.1-1 [894 kB] Get:289 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.39.3-6 [29.7 kB] Get:290 http://deb.debian.org/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.8-1 [1825 kB] Get:291 http://deb.debian.org/debian sid/main amd64 python3.11 amd64 3.11.8-1 [597 kB] Get:292 http://deb.debian.org/debian sid/main amd64 libpython3.12-minimal amd64 3.12.2-1 [807 kB] Get:293 http://deb.debian.org/debian sid/main amd64 python3.12-minimal amd64 3.12.2-1 [2186 kB] Get:294 http://deb.debian.org/debian sid/main amd64 libpython3.12-stdlib amd64 3.12.2-1 [1929 kB] Get:295 http://deb.debian.org/debian sid/main amd64 python3.12 amd64 3.12.2-1 [653 kB] Get:296 http://deb.debian.org/debian sid/main amd64 libaec0 amd64 1.1.2-1 [23.4 kB] Get:297 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.1.2-1 [7684 B] Get:298 http://deb.debian.org/debian sid/main amd64 libhdf5-103-1 amd64 1.10.10+repack-3+b1 [1243 kB] Get:299 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-100 amd64 1.10.10+repack-3+b1 [63.3 kB] Get:300 http://deb.debian.org/debian sid/main amd64 liblzf1 amd64 3.6-4 [10.1 kB] Get:301 http://deb.debian.org/debian sid/main amd64 python3-h5py all 3.10.0-1 [14.4 kB] Get:302 http://deb.debian.org/debian sid/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get:303 http://deb.debian.org/debian sid/main amd64 python3-click all 8.1.6-1 [93.8 kB] Get:304 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get:305 http://deb.debian.org/debian sid/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b1 [29.1 kB] Get:306 http://deb.debian.org/debian sid/main amd64 libyajl2 amd64 2.1.0-5+b1 [23.3 kB] Get:307 http://deb.debian.org/debian sid/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get:308 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.1.1-1 [145 kB] Get:309 http://deb.debian.org/debian sid/main amd64 python3-bibtexparser all 2.0.0b5+really1.4.1-1 [34.2 kB] Get:310 http://deb.debian.org/debian sid/main amd64 python3-dill all 0.3.8-1 [81.7 kB] Get:311 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:312 http://deb.debian.org/debian sid/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get:313 http://deb.debian.org/debian sid/main amd64 python3-lxml amd64 5.1.0-1 [2092 kB] Get:314 http://deb.debian.org/debian sid/main amd64 python3-cffi-backend amd64 1.16.0-2+b1 [112 kB] Get:315 http://deb.debian.org/debian sid/main amd64 python3-cryptography amd64 41.0.7-3 [759 kB] Get:316 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.9.0-1 [63.9 kB] Get:317 http://deb.debian.org/debian sid/main amd64 python3-jwt all 2.7.0-1 [29.7 kB] Get:318 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2023.11.17-1 [155 kB] Get:319 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get:320 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.6-2 [37.0 kB] Get:321 http://deb.debian.org/debian sid/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get:322 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 1.26.18-2 [116 kB] Get:323 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:324 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get:325 http://deb.debian.org/debian sid/main amd64 python3-globus-sdk all 3.37.0-1 [233 kB] Get:326 http://deb.debian.org/debian sid/main amd64 python3-bcrypt amd64 3.2.2-1 [32.2 kB] Get:327 http://deb.debian.org/debian sid/main amd64 libsodium23 amd64 1.0.18-1 [161 kB] Get:328 http://deb.debian.org/debian sid/main amd64 python3-nacl amd64 1.5.0-4 [56.5 kB] Get:329 http://deb.debian.org/debian sid/main amd64 python3-paramiko all 2.12.0-2 [133 kB] Get:330 http://deb.debian.org/debian sid/main amd64 python3-psutil amd64 5.9.8-1 [225 kB] Get:331 http://deb.debian.org/debian sid/main amd64 python3-setproctitle amd64 1.3.3-1+b1 [19.5 kB] Get:332 http://deb.debian.org/debian sid/main amd64 python3-tblib all 3.0.0-3 [13.4 kB] Get:333 http://deb.debian.org/debian sid/main amd64 python3-typeguard all 4.1.5-1 [35.0 kB] Get:334 http://deb.debian.org/debian sid/main amd64 python3-py all 1.11.0-2 [88.7 kB] Get:335 http://deb.debian.org/debian sid/main amd64 libmd0 amd64 1.1.0-2 [35.8 kB] Get:336 http://deb.debian.org/debian sid/main amd64 libbsd0 amd64 0.11.8-1 [125 kB] Get:337 http://deb.debian.org/debian sid/main amd64 libnorm1 amd64 1.5.9+dfsg-3 [220 kB] Get:338 http://deb.debian.org/debian sid/main amd64 libpgm-5.3-0 amd64 5.3.128~dfsg-2 [161 kB] Get:339 http://deb.debian.org/debian sid/main amd64 libzmq5 amd64 4.3.5-1+b1 [282 kB] Get:340 http://deb.debian.org/debian sid/main amd64 python3-zmq amd64 24.0.1-5+b1 [356 kB] Get:341 http://deb.debian.org/debian sid/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get:342 http://deb.debian.org/debian sid/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get:343 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:344 http://deb.debian.org/debian sid/main amd64 javascript-common all 11+nmu1 [6260 B] Get:345 http://deb.debian.org/debian sid/main amd64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get:346 http://deb.debian.org/debian sid/main amd64 node-fortawesome-fontawesome-free all 6.4.2+ds1-1 [1472 kB] Get:347 http://deb.debian.org/debian sid/main amd64 python3-blinker all 1.7.0-1 [15.5 kB] Get:348 http://deb.debian.org/debian sid/main amd64 python3-itsdangerous all 2.1.2-4 [17.1 kB] Get:349 http://deb.debian.org/debian sid/main amd64 python3-markupsafe amd64 2.1.5-1 [14.5 kB] Get:350 http://deb.debian.org/debian sid/main amd64 python3-jinja2 all 3.1.2-1 [119 kB] Get:351 http://deb.debian.org/debian sid/main amd64 python3-werkzeug all 3.0.1-2 [206 kB] Get:352 http://deb.debian.org/debian sid/main amd64 python3-flask all 3.0.2-1 [104 kB] Get:353 http://deb.debian.org/debian sid/main amd64 python3-greenlet amd64 3.0.1-2 [176 kB] Get:354 http://deb.debian.org/debian sid/main amd64 python3-sqlalchemy all 1.4.50+ds1-1 [1009 kB] Get:355 http://deb.debian.org/debian sid/main amd64 python3-flask-sqlalchemy all 3.0.3-1 [35.5 kB] Get:356 http://deb.debian.org/debian sid/main amd64 python3-parsl all 2024.02.12+ds-1 [254 kB] Get:357 http://deb.debian.org/debian sid/main amd64 python3-tomlkit all 0.12.3-1 [41.5 kB] Get:358 http://deb.debian.org/debian sid/main amd64 python3-tzlocal all 5.2-1.1 [23.7 kB] Get:359 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.8.2-3 [78.4 kB] Get:360 http://deb.debian.org/debian sid/main amd64 python3-networkx all 2.8.8-1 [1425 kB] Get:361 http://deb.debian.org/debian sid/main amd64 python3-public all 4.0-2 [6844 B] Get:362 http://deb.debian.org/debian sid/main amd64 python3-flufl.lock all 5.0.1-5 [14.4 kB] Get:363 http://deb.debian.org/debian sid/main amd64 qiime all 2024.2.0-1 [304 kB] Get:364 http://deb.debian.org/debian sid/main amd64 python3-tz all 2024.1-1 [30.8 kB] Get:365 http://deb.debian.org/debian sid/main amd64 libssw0 amd64 1.1-14 [20.9 kB] Get:366 http://deb.debian.org/debian sid/main amd64 python3-wcwidth all 0.2.5+dfsg1-1.1 [21.4 kB] Get:367 http://deb.debian.org/debian sid/main amd64 python3-prompt-toolkit all 3.0.43-1 [276 kB] Get:368 http://deb.debian.org/debian sid/main amd64 python3-parso all 0.8.3-1 [67.4 kB] Get:369 http://deb.debian.org/debian sid/main amd64 python3-typeshed all 0.0~git20231111.6764465-3 [1258 kB] Get:370 http://deb.debian.org/debian sid/main amd64 python3-jedi all 0.19.1+ds1-1 [691 kB] Get:371 http://deb.debian.org/debian sid/main amd64 python3-traitlets all 5.5.0-2 [90.7 kB] Get:372 http://deb.debian.org/debian sid/main amd64 python3-matplotlib-inline all 0.1.6-2 [8652 B] Get:373 http://deb.debian.org/debian sid/main amd64 python3-ptyprocess all 0.7.0-5 [14.7 kB] Get:374 http://deb.debian.org/debian sid/main amd64 python3-pexpect all 4.9-2 [55.5 kB] Get:375 http://deb.debian.org/debian sid/main amd64 python3-pygments all 2.17.2+dfsg-1 [818 kB] Get:376 http://deb.debian.org/debian sid/main amd64 python3-asttokens all 2.4.1-1 [20.6 kB] Get:377 http://deb.debian.org/debian sid/main amd64 python3-executing all 2.0.1-0.1 [22.7 kB] Get:378 http://deb.debian.org/debian sid/main amd64 python3-pure-eval all 0.2.2-1 [11.2 kB] Get:379 http://deb.debian.org/debian sid/main amd64 python3-stack-data all 0.6.3-1 [21.6 kB] Get:380 http://deb.debian.org/debian sid/main amd64 python3-ipython all 8.20.0-1 [556 kB] Get:381 http://deb.debian.org/debian sid/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:382 http://deb.debian.org/debian sid/main amd64 fonts-lyx all 2.4.0~RC3-1 [189 kB] Get:383 http://deb.debian.org/debian sid/main amd64 python-matplotlib-data all 3.6.3-1 [2744 kB] Get:384 http://deb.debian.org/debian sid/main amd64 libimagequant0 amd64 2.18.0-1 [35.0 kB] Get:385 http://deb.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get:386 http://deb.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.5.0-2+b2 [190 kB] Get:387 http://deb.debian.org/debian sid/main amd64 libraqm0 amd64 0.10.1-1 [13.7 kB] Get:388 http://deb.debian.org/debian sid/main amd64 libwebpdemux2 amd64 1.3.2-0.4 [107 kB] Get:389 http://deb.debian.org/debian sid/main amd64 libwebpmux3 amd64 1.3.2-0.4 [120 kB] Get:390 http://deb.debian.org/debian sid/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get:391 http://deb.debian.org/debian sid/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get:392 http://deb.debian.org/debian sid/main amd64 python3-tk amd64 3.11.5-1 [108 kB] Get:393 http://deb.debian.org/debian sid/main amd64 python3-pil.imagetk amd64 10.2.0-1 [77.7 kB] Get:394 http://deb.debian.org/debian sid/main amd64 python3-contourpy amd64 1.0.7-1+b2 [287 kB] Get:395 http://deb.debian.org/debian sid/main amd64 python3-cycler all 0.11.0-1 [8020 B] Get:396 http://deb.debian.org/debian sid/main amd64 python3-brotli amd64 1.1.0-2+b3 [312 kB] Get:397 http://deb.debian.org/debian sid/main amd64 python3-attr all 23.2.0-1 [65.5 kB] Get:398 http://deb.debian.org/debian sid/main amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get:399 http://deb.debian.org/debian sid/main amd64 python3-mpmath all 1.2.1-2 [418 kB] Get:400 http://deb.debian.org/debian sid/main amd64 python3-sympy all 1.12-7 [3869 kB] Get:401 http://deb.debian.org/debian sid/main amd64 python3-fs all 2.4.16-3 [95.3 kB] Get:402 http://deb.debian.org/debian sid/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b3 [25.5 kB] Get:403 http://deb.debian.org/debian sid/main amd64 python3-unicodedata2 amd64 15.1.0+ds-1+b1 [299 kB] Get:404 http://deb.debian.org/debian sid/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get:405 http://deb.debian.org/debian sid/main amd64 python3-fonttools amd64 4.46.0-1 [1623 kB] Get:406 http://deb.debian.org/debian sid/main amd64 python3-packaging all 23.2-1 [44.8 kB] Get:407 http://deb.debian.org/debian sid/main amd64 libqhull-r8.0 amd64 2020.2-6 [244 kB] Get:408 http://deb.debian.org/debian sid/main amd64 python3-natsort all 8.0.2-2 [39.0 kB] Get:409 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.11.6-1 [9224 B] Get:410 http://deb.debian.org/debian sid/main amd64 libpam-runtime all 1.5.2-9.1 [134 kB] Get:411 http://deb.debian.org/debian sid/main amd64 libacl1 amd64 2.3.2-1 [32.4 kB] Get:412 http://deb.debian.org/debian sid/main amd64 libattr1 amd64 1:2.5.2-1 [22.5 kB] Get:413 http://deb.debian.org/debian sid/main amd64 libpcre3 amd64 2:8.39-15 [341 kB] Get:414 http://deb.debian.org/debian sid/main amd64 mawk amd64 1.3.4.20240123-1 [136 kB] Get:415 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get:416 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get:417 http://deb.debian.org/debian sid/main amd64 gcc-11-base amd64 11.4.0-7 [40.3 kB] Get:418 http://deb.debian.org/debian sid/main amd64 libtsan0 amd64 11.4.0-7 [2019 kB] Get:419 http://deb.debian.org/debian sid/main amd64 libasan6 amd64 11.4.0-7 [2049 kB] Get:420 http://deb.debian.org/debian sid/main amd64 libstdc++-10-dev amd64 10.5.0-3 [1755 kB] Get:421 http://deb.debian.org/debian sid/main amd64 libgcc-10-dev amd64 10.5.0-3 [2323 kB] Get:422 http://deb.debian.org/debian sid/main amd64 gcc-10-base amd64 10.5.0-3 [36.6 kB] Get:423 http://deb.debian.org/debian sid/main amd64 gcc-9-base amd64 9.5.0-5 [28.8 kB] Get:424 http://deb.debian.org/debian sid/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:425 http://deb.debian.org/debian sid/main amd64 libss2 amd64 1.47.0-2+b1 [24.8 kB] Get:426 http://deb.debian.org/debian sid/main amd64 libuv1 amd64 1.46.0-3 [143 kB] Get:427 http://deb.debian.org/debian sid/main amd64 mailcap all 3.70+nmu1 [32.0 kB] Get:428 http://deb.debian.org/debian sid/main amd64 python3-backcall all 0.2.0-4 [12.1 kB] Get:429 http://deb.debian.org/debian sid/main amd64 python3-cachecontrol all 0.14.0-1 [18.6 kB] Get:430 http://deb.debian.org/debian sid/main amd64 python3-future all 0.18.2-6 [348 kB] Get:431 http://deb.debian.org/debian sid/main amd64 python3-ipython-genutils all 0.2.0-6 [21.6 kB] Get:432 http://deb.debian.org/debian sid/main amd64 python3-joblib all 1.3.2-1 [217 kB] Get:433 http://deb.debian.org/debian sid/main amd64 python3-lockfile all 1:0.12.2-3 [15.7 kB] Get:434 http://deb.debian.org/debian sid/main amd64 python3-pickleshare all 0.7.5-5 [7600 B] Get:435 http://deb.debian.org/debian sid/main amd64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get:436 http://deb.debian.org/debian sid/main amd64 python3-sklearn all 1.4.1.post1+dfsg-1 [2246 kB] Get:437 http://deb.debian.org/debian sid/main amd64 r-cran-getopt all 1.20.4-1 [38.6 kB] Get:438 http://deb.debian.org/debian sid/main amd64 r-cran-optparse all 1.7.4-1 [81.8 kB] Get:439 http://deb.debian.org/debian sid/main amd64 q2-dada2 amd64 2024.2.0-1 [1814 kB] Get:440 http://deb.debian.org/debian sid/main amd64 r-cran-brio amd64 1.1.4-1 [37.4 kB] Get:441 http://deb.debian.org/debian sid/main amd64 r-cran-processx amd64 3.8.3-1 [345 kB] Get:442 http://deb.debian.org/debian sid/main amd64 r-cran-callr all 3.7.3-2 [426 kB] Get:443 http://deb.debian.org/debian sid/main amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1692 kB] Get:444 http://deb.debian.org/debian sid/main amd64 r-cran-desc all 1.4.3-1 [351 kB] Get:445 http://deb.debian.org/debian sid/main amd64 r-cran-diffobj amd64 0.3.5-1+b1 [1122 kB] Get:446 http://deb.debian.org/debian sid/main amd64 r-cran-digest amd64 0.6.34-1 [192 kB] Get:447 http://deb.debian.org/debian sid/main amd64 r-cran-ellipsis amd64 0.3.2-2 [35.1 kB] Get:448 http://deb.debian.org/debian sid/main amd64 r-cran-evaluate all 0.23-1 [90.6 kB] Get:449 http://deb.debian.org/debian sid/main amd64 r-cran-formatr all 1.14-1 [152 kB] Get:450 http://deb.debian.org/debian sid/main amd64 r-cran-fs amd64 1.6.3+dfsg-1 [227 kB] Get:451 http://deb.debian.org/debian sid/main amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [443 kB] Get:452 http://deb.debian.org/debian sid/main amd64 r-cran-pkgbuild all 1.4.3-1 [210 kB] Get:453 http://deb.debian.org/debian sid/main amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] Get:454 http://deb.debian.org/debian sid/main amd64 r-cran-pkgload all 1.3.4-1 [208 kB] Get:455 http://deb.debian.org/debian sid/main amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] Get:456 http://deb.debian.org/debian sid/main amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] Get:457 http://deb.debian.org/debian sid/main amd64 r-cran-rstudioapi all 0.15.0-1 [282 kB] Get:458 http://deb.debian.org/debian sid/main amd64 r-cran-stringi amd64 1.8.3-1 [861 kB] Get:459 http://deb.debian.org/debian sid/main amd64 r-cran-stringr all 1.5.1-1 [296 kB] Get:460 http://deb.debian.org/debian sid/main amd64 r-cran-waldo all 0.5.2-1 [120 kB] Get:461 http://deb.debian.org/debian sid/main amd64 r-cran-testthat amd64 3.2.1-1 [1644 kB] Get:462 http://deb.debian.org/debian sid/main amd64 ttf-bitstream-vera all 1.10-8.2 [223 kB] 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53687 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.39.3-6_amd64.deb ... Unpacking libsmartcols1:amd64 (2.39.3-6) over (2.36.1-8+deb11u1) ... Setting up libsmartcols1:amd64 (2.39.3-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53688 files and directories currently installed.) Preparing to unpack .../login_1%3a4.13+dfsg1-4_amd64.deb ... Unpacking login (1:4.13+dfsg1-4) over (1:4.8.1-1) ... Setting up login (1:4.13+dfsg1-4) ... Installing new version of config file /etc/login.defs ... Installing new version of config file /etc/pam.d/login ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53697 files and directories currently installed.) Preparing to unpack .../util-linux_2.39.3-6_amd64.deb ... Unpacking util-linux (2.39.3-6) over (2.36.1-8+deb11u1) ... dpkg: warning: unable to delete old directory '/usr/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/usr/lib/udev': Directory not empty Setting up util-linux (2.39.3-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53692 files and directories currently installed.) Preparing to unpack .../liblzma5_5.4.5-0.3_amd64.deb ... Unpacking liblzma5:amd64 (5.4.5-0.3) over (5.2.5-2.1~deb11u1) ... Setting up liblzma5:amd64 (5.4.5-0.3) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53693 files and directories currently installed.) Preparing to unpack .../archives/dpkg_1.22.4_amd64.deb ... Unpacking dpkg (1.22.4) over (1.20.13) ... Setting up dpkg (1.22.4) ... Installing new version of config file /etc/cron.daily/dpkg ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53685 files and directories currently installed.) Preparing to unpack .../archives/lsb-base_11.6_all.deb ... Unpacking lsb-base (11.6) over (11.1.0) ... Preparing to unpack .../sysvinit-utils_3.08-6_amd64.deb ... Unpacking sysvinit-utils (3.08-6) over (2.96-7+deb11u1) ... Setting up sysvinit-utils (3.08-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53684 files and directories currently installed.) Preparing to unpack .../x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) over (1:7.7+22) ... Preparing to unpack .../debianutils_5.16_amd64.deb ... Unpacking debianutils (5.16) over (4.11.2) ... Setting up debianutils (5.16) ... update-alternatives: using /usr/bin/which.debianutils to provide /usr/bin/which (which) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53686 files and directories currently installed.) Preparing to unpack .../bash_5.2.21-2_amd64.deb ... Unpacking bash (5.2.21-2) over (5.1-2+deb11u1) ... Setting up bash (5.2.21-2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53687 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.39.3-6_amd64.deb ... Unpacking bsdutils (1:2.39.3-6) over (1:2.36.1-8+deb11u1) ... Setting up bsdutils (1:2.39.3-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53687 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-2+b1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.3.0+dfsg-2+b1) over (2:6.2.1+dfsg-1+deb11u1) ... Setting up libgmp10:amd64 (2:6.3.0+dfsg-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53688 files and directories currently installed.) Preparing to unpack .../coreutils_9.4-3+b1_amd64.deb ... Unpacking coreutils (9.4-3+b1) over (8.32-4+b1) ... Setting up coreutils (9.4-3+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53693 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-6_amd64.deb ... Unpacking dash (0.5.12-6) over (0.5.11+git20200708+dd9ef66-5) ... Setting up dash (0.5.12-6) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53692 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.10-1_amd64.deb ... Unpacking diffutils (1:3.10-1) over (1:3.7-5) ... Setting up diffutils (1:3.10-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53694 files and directories currently installed.) Preparing to unpack .../findutils_4.9.0-5_amd64.deb ... Unpacking findutils (4.9.0-5) over (4.8.0-1) ... Setting up findutils (4.9.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53694 files and directories currently installed.) Preparing to unpack .../archives/grep_3.11-4_amd64.deb ... Unpacking grep (3.11-4) over (3.6-1+deb11u1) ... Setting up grep (3.11-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53696 files and directories currently installed.) Preparing to unpack .../archives/gzip_1.12-1_amd64.deb ... Unpacking gzip (1.12-1) over (1.10-4+deb11u1) ... Setting up gzip (1.12-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53696 files and directories currently installed.) Preparing to unpack .../libncurses6_6.4+20240113-1_amd64.deb ... Unpacking libncurses6:amd64 (6.4+20240113-1) over (6.2+20201114-2+deb11u2) ... Preparing to unpack .../libncursesw6_6.4+20240113-1_amd64.deb ... Unpacking libncursesw6:amd64 (6.4+20240113-1) over (6.2+20201114-2+deb11u2) ... Preparing to unpack .../libtinfo6_6.4+20240113-1_amd64.deb ... Unpacking libtinfo6:amd64 (6.4+20240113-1) over (6.2+20201114-2+deb11u2) ... Setting up libtinfo6:amd64 (6.4+20240113-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53694 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.4+20240113-1_amd64.deb ... Unpacking ncurses-bin (6.4+20240113-1) over (6.2+20201114-2+deb11u2) ... Setting up ncurses-bin (6.4+20240113-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53694 files and directories currently installed.) Preparing to unpack .../archives/sed_4.9-2_amd64.deb ... Unpacking sed (4.9-2) over (4.7-1) ... Setting up sed (4.9-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53695 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.271_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.271) over (0.260) ... Setting up libdebconfclient0:amd64 (0.271) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53695 files and directories currently installed.) Preparing to unpack .../base-passwd_3.6.3_amd64.deb ... Unpacking base-passwd (3.6.3) over (3.5.51) ... Setting up base-passwd (3.6.3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53695 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.47-3_amd64.deb ... Unpacking libgpg-error0:amd64 (1.47-3) over (1.38-2) ... Setting up libgpg-error0:amd64 (1.47-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53695 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.10.3-2_amd64.deb ... Unpacking libgcrypt20:amd64 (1.10.3-2) over (1.8.7-6) ... Setting up libgcrypt20:amd64 (1.10.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53697 files and directories currently installed.) Preparing to unpack .../libstdc++6_14-20240201-3_amd64.deb ... Unpacking libstdc++6:amd64 (14-20240201-3) over (10.2.1-6) ... Setting up libstdc++6:amd64 (14-20240201-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53697 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.9.4-1+b2_amd64.deb ... Unpacking liblz4-1:amd64 (1.9.4-1+b2) over (1.9.3-2) ... Setting up liblz4-1:amd64 (1.9.4-1+b2) ... Selecting previously unselected package libcap2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53698 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.66-5_amd64.deb ... Unpacking libcap2:amd64 (1:2.66-5) ... Setting up libcap2:amd64 (1:2.66-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53706 files and directories currently installed.) Preparing to unpack .../libsystemd0_255.3-2_amd64.deb ... Unpacking libsystemd0:amd64 (255.3-2) over (247.3-7+deb11u4) ... Setting up libsystemd0:amd64 (255.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53707 files and directories currently installed.) Preparing to unpack .../libudev1_255.3-2_amd64.deb ... Unpacking libudev1:amd64 (255.3-2) over (247.3-7+deb11u4) ... Setting up libudev1:amd64 (255.3-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53708 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.2-2+b1_amd64.deb ... Unpacking libxxhash0:amd64 (0.8.2-2+b1) over (0.8.0-2) ... Setting up libxxhash0:amd64 (0.8.2-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53709 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.7.11_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.7.11) over (2.2.4) ... Setting up libapt-pkg6.0:amd64 (2.7.11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53709 files and directories currently installed.) Preparing to unpack .../libnettle8_3.9.1-2_amd64.deb ... Unpacking libnettle8:amd64 (3.9.1-2) over (3.7.3-1) ... Setting up libnettle8:amd64 (3.9.1-2) ... Selecting previously unselected package libffi8:amd64. (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53714 files and directories currently installed.) Preparing to unpack .../libunistring5_1.1-2_amd64.deb ... Unpacking libunistring5:amd64 (1.1-2) ... Setting up libunistring5:amd64 (1.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53720 files and directories currently installed.) Preparing to unpack .../libhogweed6_3.9.1-2_amd64.deb ... Unpacking libhogweed6:amd64 (3.9.1-2) over (3.7.3-1) ... Setting up libhogweed6:amd64 (3.9.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53720 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.7-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.7-2) over (2.3.0-5) ... Setting up libidn2-0:amd64 (2.3.7-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53722 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.19.0-3+b2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.19.0-3+b2) over (4.16.0-2+deb11u1) ... Setting up libtasn1-6:amd64 (4.19.0-3+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53723 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.8.3-1_amd64.deb ... Unpacking libgnutls30:amd64 (3.8.3-1) over (3.7.1-5+deb11u4) ... Setting up libgnutls30:amd64 (3.8.3-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53724 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.5-1_all.deb ... Unpacking libsemanage-common (3.5-1) over (3.1-1) ... Setting up libsemanage-common (3.5-1) ... Installing new version of config file /etc/selinux/semanage.conf ... Selecting previously unselected package libsepol2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53724 files and directories currently installed.) Preparing to unpack .../libsepol2_3.5-2_amd64.deb ... Unpacking libsepol2:amd64 (3.5-2) ... Setting up libsepol2:amd64 (3.5-2) ... Selecting previously unselected package libsemanage2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53728 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.5-1+b2_amd64.deb ... Unpacking libsemanage2:amd64 (3.5-1+b2) ... Setting up libsemanage2:amd64 (3.5-1+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53733 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.13+dfsg1-4_amd64.deb ... Unpacking passwd (1:4.13+dfsg1-4) over (1:4.8.1-1) ... Setting up passwd (1:4.13+dfsg1-4) ... Installing new version of config file /etc/default/useradd ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53762 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.2-9.1+b1_amd64.deb ... Unpacking libpam-modules-bin (1.5.2-9.1+b1) over (1.4.0-9+deb11u1) ... Replacing files in old package libpam-modules:amd64 (1.4.0-9+deb11u1) ... Setting up libpam-modules-bin (1.5.2-9.1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53767 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.2-9.1+b1_amd64.deb ... Unpacking libpam-modules:amd64 (1.5.2-9.1+b1) over (1.4.0-9+deb11u1) ... Setting up libpam-modules:amd64 (1.5.2-9.1+b1) ... Installing new version of config file /etc/security/limits.conf ... Installing new version of config file /etc/security/sepermit.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53768 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.137_all.deb ... moving unchanged adduser.conf to adduser.conf.update-old. New dpkg-conffile will come from the package. Unpacking adduser (3.137) over (3.118+deb11u1) ... Setting up adduser (3.137) ... Installing new version of config file /etc/deluser.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53730 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.40-1.1+b1_amd64.deb ... Unpacking gpgv (2.2.40-1.1+b1) over (2.2.27-2+deb11u2) ... Setting up gpgv (2.2.40-1.1+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53731 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2023.4_all.deb ... Unpacking debian-archive-keyring (2023.4) over (2021.1.1+deb11u1) ... Setting up debian-archive-keyring (2023.4) ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-automatic.gpg ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53731 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.5-1_amd64.deb ... Unpacking libseccomp2:amd64 (2.5.5-1) over (2.5.1-1+deb11u1) ... Setting up libseccomp2:amd64 (2.5.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53731 files and directories currently installed.) Preparing to unpack .../archives/apt_2.7.11_amd64.deb ... Unpacking apt (2.7.11) over (2.2.4) ... Setting up apt (2.7.11) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt-compat ... Removing obsolete conffile /etc/kernel/postinst.d/apt-auto-removal ... Selecting previously unselected package libnumber-compare-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53724 files and directories currently installed.) Preparing to unpack .../libnumber-compare-perl_0.03-3_all.deb ... Unpacking libnumber-compare-perl (0.03-3) ... Setting up libnumber-compare-perl (0.03-3) ... Selecting previously unselected package libtext-glob-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53731 files and directories currently installed.) Preparing to unpack .../libtext-glob-perl_0.11-3_all.deb ... Unpacking libtext-glob-perl (0.11-3) ... Setting up libtext-glob-perl (0.11-3) ... Selecting previously unselected package libfile-find-rule-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53738 files and directories currently installed.) Preparing to unpack .../libfile-find-rule-perl_0.34-3_all.deb ... Unpacking libfile-find-rule-perl (0.34-3) ... Setting up perl-modules-5.38 (5.38.2-3) ... Setting up libgdbm6:amd64 (1.23-5+b1) ... Setting up libgdbm-compat4:amd64 (1.23-5+b1) ... Setting up libperl5.38:amd64 (5.38.2-3) ... Setting up perl (5.38.2-3) ... Setting up libfile-find-rule-perl (0.34-3) ... Selecting previously unselected package usrmerge. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53753 files and directories currently installed.) Preparing to unpack .../archives/usrmerge_39_all.deb ... Unpacking usrmerge (39) ... Setting up usrmerge (39) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53760 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.66_all.deb ... Unpacking init-system-helpers (1.66) over (1.60) ... Setting up init-system-helpers (1.66) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53760 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.4+20240113-1_all.deb ... Unpacking ncurses-base (6.4+20240113-1) over (6.2+20201114-2+deb11u2) ... Setting up ncurses-base (6.4+20240113-1) ... Selecting previously unselected package gcc-13-base:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 53760 files and directories currently installed.) Preparing to unpack .../00-gcc-13-base_13.2.0-13_amd64.deb ... Unpacking gcc-13-base:amd64 (13.2.0-13) ... Preparing to unpack .../01-libgomp1_14-20240201-3_amd64.deb ... Unpacking libgomp1:amd64 (14-20240201-3) over (10.2.1-6) ... Preparing to unpack .../02-libitm1_14-20240201-3_amd64.deb ... Unpacking libitm1:amd64 (14-20240201-3) over (10.2.1-6) ... Preparing to unpack .../03-libatomic1_14-20240201-3_amd64.deb ... Unpacking libatomic1:amd64 (14-20240201-3) over (10.2.1-6) ... Selecting previously unselected package libasan8:amd64. Preparing to unpack .../04-libasan8_14-20240201-3_amd64.deb ... Unpacking libasan8:amd64 (14-20240201-3) ... Preparing to unpack .../05-liblsan0_14-20240201-3_amd64.deb ... Unpacking liblsan0:amd64 (14-20240201-3) over (10.2.1-6) ... Selecting previously unselected package libtsan2:amd64. Preparing to unpack .../06-libtsan2_14-20240201-3_amd64.deb ... Unpacking libtsan2:amd64 (14-20240201-3) ... Preparing to unpack .../07-libubsan1_14-20240201-3_amd64.deb ... Unpacking libubsan1:amd64 (14-20240201-3) over (10.2.1-6) ... Selecting previously unselected package libhwasan0:amd64. Preparing to unpack .../08-libhwasan0_14-20240201-3_amd64.deb ... Unpacking libhwasan0:amd64 (14-20240201-3) ... Preparing to unpack .../09-libquadmath0_14-20240201-3_amd64.deb ... Unpacking libquadmath0:amd64 (14-20240201-3) over (10.2.1-6) ... Selecting previously unselected package libgcc-13-dev:amd64. Preparing to unpack .../10-libgcc-13-dev_13.2.0-13_amd64.deb ... Unpacking libgcc-13-dev:amd64 (13.2.0-13) ... Selecting previously unselected package libstdc++-13-dev:amd64. Preparing to unpack .../11-libstdc++-13-dev_13.2.0-13_amd64.deb ... Unpacking libstdc++-13-dev:amd64 (13.2.0-13) ... Preparing to unpack .../12-libboost-dev_1.83.0.2_amd64.deb ... Unpacking libboost-dev:amd64 (1.83.0.2) over (1.74.0.3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54816 files and directories currently installed.) Removing libboost1.74-dev:amd64 (1.74.0-9) ... Selecting previously unselected package libboost1.83-dev:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 39308 files and directories currently installed.) Preparing to unpack .../libboost1.83-dev_1.83.0-2+b2_amd64.deb ... Unpacking libboost1.83-dev:amd64 (1.83.0-2+b2) ... Preparing to unpack .../libtbb-dev_2021.11.0-2_amd64.deb ... Unpacking libtbb-dev:amd64 (2021.11.0-2) over (2020.3-1) ... Preparing to unpack .../r-cran-rcppparallel_5.1.7+dfsg-3_amd64.deb ... Unpacking r-cran-rcppparallel (5.1.7+dfsg-3) over (5.0.2+dfsg-4) ... 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Setting up python3-prompt-toolkit (3.0.43-1) ... Setting up python3-distutils (3.11.5-1) ... python3.12: can't get files for byte-compilation Setting up r-cran-bh (1.84.0-1) ... Setting up r-cran-ellipsis (0.3.2-2) ... Setting up python3-sympy (1.12-7) ... Setting up python3-attr (23.2.0-1) ... Setting up python3-lockfile (1:0.12.2-3) ... Setting up python3-pure-eval (0.2.2-1) ... Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... Setting up r-cran-stringr (1.5.1-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up r-bioc-biocparallel (1.36.0-1) ... Setting up python3-tblib (3.0.0-3) ... Setting up python3-py (1.11.0-2) ... Setting up r-cran-callr (3.7.3-2) ... Setting up python3-backcall (0.2.0-4) ... Setting up python3-ijson (3.2.3-1) ... Setting up python3-joblib (1.3.2-1) ... Setting up python3-parso (0.8.3-1) ... Setting up python3-jwt (2.7.0-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-lz4 (4.0.2+dfsg-1+b3) ... Setting up python3-public (4.0-2) ... Setting up python3-ipython-genutils (0.2.0-6) ... Setting up python3-asttokens (2.4.1-1) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-unicodedata2 (15.1.0+ds-1+b1) ... Setting up r-cran-desc (1.4.3-1) ... Setting up python3-bcrypt (3.2.2-1) ... Setting up python3-typeguard (4.1.5-1) ... Setting up python3-threadpoolctl (3.1.0-1) ... Setting up r-cran-tibble (3.2.1+dfsg-2) ... Setting up python3-itsdangerous (2.1.2-4) ... Setting up python3-yaml (6.0.1-2) ... Setting up python3-tk:amd64 (3.11.5-1) ... Setting up python3-click (8.1.6-1) ... Setting up python3-networkx (2.8.8-1) ... /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_gml.py:556: SyntaxWarning: invalid octal escape sequence '\420' "graph [edge [ source u'u\4200' target u'u\4200' ] " /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_gml.py:557: SyntaxWarning: invalid octal escape sequence '\420' + "node [ id u'u\4200' label b ] ]" Setting up python3-sqlalchemy (1.4.50+ds1-1) ... Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... Setting up python3-matplotlib-inline (0.1.6-2) ... Setting up python3-fs (2.4.16-3) ... Setting up python3-flufl.lock (5.0.1-5) ... Setting up r-cran-interp (1.1-6-1) ... Setting up python3-pygments (2.17.2+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... Setting up python3-pil.imagetk:amd64 (10.2.0-1) ... Setting up python3-executing (2.0.1-0.1) ... Setting up python3-pexpect (4.9-2) ... Setting up python3-zmq (24.0.1-5+b1) ... Setting up python3-cryptography (41.0.7-3) ... Setting up python3-requests (2.31.0+dfsg-1) ... Setting up r-cran-waldo (0.5.2-1) ... Setting up python3-numpy (1:1.24.2-2) ... Setting up r-bioc-xvector (0.42.0-1) ... Setting up r-cran-pkgbuild (1.4.3-1) ... Setting up python3-hdmedians (0.14.2-5.1) ... Setting up python3-contourpy (1.0.7-1+b2) ... Setting up python3-cachecontrol (0.14.0-1) ... Setting up python3-future (0.18.2-6) ... /usr/lib/python3/dist-packages/future/backports/email/_header_value_parser.py:662: SyntaxWarning: invalid escape sequence '\(' '(', '\(').replace( /usr/lib/python3/dist-packages/future/backports/email/_header_value_parser.py:663: SyntaxWarning: invalid escape sequence '\)' ')', '\)') /usr/lib/python3/dist-packages/future/backports/email/_header_value_parser.py:1349: SyntaxWarning: invalid escape sequence '\]' ''.join(ATOM_ENDS).replace('\\','\\\\').replace(']','\]'))).match /usr/lib/python3/dist-packages/future/backports/email/_header_value_parser.py:1352: SyntaxWarning: invalid escape sequence '\]' ''.join(TOKEN_ENDS).replace('\\','\\\\').replace(']','\]'))).match /usr/lib/python3/dist-packages/future/backports/email/_header_value_parser.py:1354: SyntaxWarning: invalid escape sequence '\]' ''.join(ATTRIBUTE_ENDS).replace('\\','\\\\').replace(']','\]'))).match /usr/lib/python3/dist-packages/future/backports/email/_header_value_parser.py:1357: SyntaxWarning: invalid escape sequence '\]' '\\','\\\\').replace(']','\]'))).match /usr/lib/python3/dist-packages/future/backports/email/_header_value_parser.py:1541: SyntaxWarning: invalid escape sequence '\ ' """ctext = /usr/lib/python3/dist-packages/future/backports/email/_header_value_parser.py:1876: SyntaxWarning: invalid escape sequence '\ ' """ dtext = / obs-dtext /usr/lib/python3/dist-packages/future/backports/email/feedparser.py:37: SyntaxWarning: invalid escape sequence '\Z' NLCRE_eol = re.compile('(\r\n|\r|\n)\Z') /usr/lib/python3/dist-packages/future/backports/email/utils.py:68: SyntaxWarning: invalid escape sequence '\A' '([^\ud800-\udbff]|\A)[\udc00-\udfff]([^\udc00-\udfff]|\Z)').search /usr/lib/python3/dist-packages/future/backports/html/parser.py:31: SyntaxWarning: invalid escape sequence '\s' tagfind = re.compile('([a-zA-Z][-.a-zA-Z0-9:_]*)(?:\s|/(?!>))*') /usr/lib/python3/dist-packages/future/backports/html/parser.py:79: SyntaxWarning: invalid escape sequence '\s' endtagfind = re.compile('') /usr/lib/python3/dist-packages/future/backports/http/client.py:1: SyntaxWarning: invalid escape sequence '\_' """HTTP/1.1 client library /usr/lib/python3/dist-packages/future/backports/http/cookiejar.py:212: SyntaxWarning: invalid escape sequence '\d' "(\d\d\d\d) (\d\d):(\d\d):(\d\d) GMT$", re.ASCII) /usr/lib/python3/dist-packages/future/backports/http/cookiejar.py:289: SyntaxWarning: invalid escape sequence '\d' """^ /usr/lib/python3/dist-packages/future/backports/http/cookiejar.py:423: SyntaxWarning: invalid escape sequence '\s' non_junk, nr_junk_chars = re.subn("^[=\s;]*", "", text) /usr/lib/python3/dist-packages/future/backports/test/support.py:1977: SyntaxWarning: invalid escape sequence '\d' m = re.match("2.6.(\d{1,2})", kernel_version) /usr/lib/python3/dist-packages/future/backports/urllib/parse.py:957: SyntaxWarning: invalid escape sequence '\?' _queryprog = re.compile('^(.*)\?([^?]*)$') /usr/lib/python3/dist-packages/past/types/oldstr.py:23: SyntaxWarning: invalid escape sequence '\d' """ Setting up python3-stack-data (0.6.3-1) ... Setting up python3-nacl (1.5.0-4) ... Setting up python3-globus-sdk (3.37.0-1) ... Setting up r-cran-pkgload (1.3.4-1) ... Setting up python3-scipy (1.11.4-3) ... Setting up python3-jedi (0.19.1+ds1-1) ... Setting up r-bioc-sparsearray (1.2.3+dfsg-1) ... Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... Setting up python3-flask (3.0.2-1) ... Setting up r-bioc-rhtslib (2.4.1+dfsg-2) ... Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-4) ... Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... Setting up python3-sklearn-lib:amd64 (1.4.1.post1+dfsg-1) ... Setting up python3-h5py-serial (3.10.0-1) ... Setting up r-cran-latticeextra (0.6-30-1) ... Setting up r-cran-testthat (3.2.1-1) ... Setting up python3-pandas (2.1.4+dfsg-4) ... Setting up python3-ipython (8.20.0-1) ... Setting up python3-h5py (3.10.0-1) ... Setting up python3-sklearn (1.4.1.post1+dfsg-1) ... Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... Setting up python3-paramiko (2.12.0-2) ... Setting up python3-flask-sqlalchemy (3.0.3-1) ... Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... Setting up python3-parsl (2024.02.12+ds-1) ... Setting up qiime (2024.2.0-1) ... Setting up python3-biom-format (2.1.15.2-3) ... Setting up r-bioc-genomicalignments (1.38.2-1) ... Setting up r-bioc-shortread (1.60.0-2) ... Setting up r-bioc-dada2 (1.30.0+dfsg-1) ... Setting up python3-fonttools (4.46.0-1) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-matplotlib (3.6.3-1+b2) ... Setting up python3-skbio (0.5.9-4) ... Setting up q2-types (2024.2.0-1) ... Setting up q2-dada2 (2024.2.0-1) ... Processing triggers for libc-bin (2.37-15) ... Processing triggers for debianutils (5.16) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 5m14.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-get', '-yf', 'dist-upgrade'] 5m14.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 5m15.7s DUMP: 991d60326b656f654c77c7eb11b43b3f - 5m15.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 5m15.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-cache', 'show', '--no-all-versions', 'q2-dada2'] 5m16.1s DUMP: Package: q2-dada2 Version: 2024.2.0-1 Installed-Size: 2289 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: python3:any, r-base-core, r-bioc-dada2 (>= 1.24.0+dfsg-2~), r-cran-optparse, qiime (>= 2024.2), q2-types (>= 2024.2), python3-biom-format, python3-skbio Description-en: QIIME 2 plugin to work with adapters in sequence data QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features: * Integrated and automatic tracking of data provenance * Semantic type system * Plugin system for extending microbiome analysis functionality * Support for multiple types of user interfaces (e.g. API, command line, graphical) . QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline. . QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed. . This package wraps the dada2 R package in BioConductor for modeling and correcting Illumina-sequenced amplicon errors. This was shown to improve the sensitivity of diversity analyses. Description-md5: e1c8db6d62a4966c98d7f3ec4d9ab3cb Homepage: https://qiime2.org/ Section: science Priority: optional Filename: pool/main/q/q2-dada2/q2-dada2_2024.2.0-1_amd64.deb Size: 1814356 MD5sum: afcfb66e2da797c64b9186019cca9a2b SHA256: b5aa8dc71cd771dac696ae10ce2759bd5920d9826256c04ca884aafa1e129afe 5m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-cache', 'show', '--no-all-versions', 'q2-dada2'] 5m16.1s INFO: apt-cache knows about the following packages: q2-dada2 5m16.1s INFO: Running scripts pre_install 5m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_database-server'] 5m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_database-server'] 5m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_exceptions'] 5m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_exceptions'] 5m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_extras'] 5m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_extras'] 5m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_foreign_architecture'] 5m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_foreign_architecture'] 5m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_foreign_architecture_i386'] 5m16.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_foreign_architecture_i386'] 5m16.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-cache', 'policy'] 5m16.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 5m16.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-cache', 'policy'] 5m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-cache', 'policy', 'q2-dada2'] 5m16.2s DUMP: q2-dada2: Installed: 2024.2.0-1 Candidate: 2024.2.0-1 Version table: *** 2024.2.0-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 5m16.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-cache', 'policy', 'q2-dada2'] 5m16.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-get', '-y', 'install', 'q2-dada2'] 5m16.9s DUMP: Reading package lists... Building dependency tree... Reading state information... q2-dada2 is already the newest version (2024.2.0-1). The following packages were automatically installed and are no longer required: cython3 gcc-11-base libasan6 libgcc-10-dev libicu67 libldap-2.4-2 libmpdec3 libncurses6 libopenblas-base libperl5.32 libproc2-0 libprocps8 libpython3.9-minimal libpython3.9-stdlib libstdc++-10-dev libtiff5 libtsan0 libwebp6 perl-modules-5.32 procps python3-backcall python3-cachecontrol python3-future python3-ipython-genutils python3-joblib python3-lockfile python3-msgpack python3-pickleshare python3-sklearn python3-sklearn-lib python3-threadpoolctl python3.9 python3.9-minimal r-cran-assertthat r-cran-ellipsis r-cran-prettyunits Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 5m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-get', '-y', 'install', 'q2-dada2'] 5m16.9s INFO: Running scripts post_install 5m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_install_exceptions'] 5m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_install_exceptions'] 5m16.9s INFO: Running scripts post_distupgrade 5m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_distupgrade_base_cleanup'] 5m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_distupgrade_base_cleanup'] 5m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_distupgrade_exceptions'] 5m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_distupgrade_exceptions'] 5m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 5m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 5m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_distupgrade_squeeze-backports'] 5m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_distupgrade_squeeze-backports'] 5m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_distupgrade_zz_backports'] 5m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_distupgrade_zz_backports'] 5m16.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp477gc8r'] 5m19.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp477gc8r'] 5m19.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp477gc8r'] 5m22.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp477gc8r'] 5m22.3s INFO: Running scripts pre_install 5m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_database-server'] 5m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_database-server'] 5m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_exceptions'] 5m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_exceptions'] 5m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_extras'] 5m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_extras'] 5m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_foreign_architecture'] 5m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_foreign_architecture'] 5m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_foreign_architecture_i386'] 5m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_install_foreign_architecture_i386'] 5m22.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-cache', 'policy'] 5m22.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 5m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-cache', 'policy'] 5m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-cache', 'policy', 'q2-dada2'] 5m22.5s DUMP: q2-dada2: Installed: 2024.2.0-1 Candidate: 2024.2.0-1 Version table: *** 2024.2.0-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 5m22.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-cache', 'policy', 'q2-dada2'] 5m22.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-get', '-y', 'install', 'q2-dada2=2024.2.0-1'] 5m23.2s DUMP: Reading package lists... Building dependency tree... Reading state information... q2-dada2 is already the newest version (2024.2.0-1). The following packages were automatically installed and are no longer required: cython3 gcc-11-base libasan6 libgcc-10-dev libicu67 libldap-2.4-2 libmpdec3 libncurses6 libopenblas-base libperl5.32 libproc2-0 libprocps8 libpython3.9-minimal libpython3.9-stdlib libstdc++-10-dev libtiff5 libtsan0 libwebp6 perl-modules-5.32 procps python3-backcall python3-cachecontrol python3-future python3-ipython-genutils python3-joblib python3-lockfile python3-msgpack python3-pickleshare python3-sklearn python3-sklearn-lib python3-threadpoolctl python3.9 python3.9-minimal r-cran-assertthat r-cran-ellipsis r-cran-prettyunits Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 5m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-get', '-y', 'install', 'q2-dada2=2024.2.0-1'] 5m23.2s INFO: Running scripts post_install 5m23.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_install_exceptions'] 5m23.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_install_exceptions'] 5m23.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp477gc8r'] 5m26.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp477gc8r'] 5m26.2s INFO: /bin converted to /usr/bin by /usr merge 5m26.2s INFO: /lib converted to /usr/lib by /usr merge 5m26.2s INFO: /lib/init converted to /usr/lib/init by /usr merge 5m26.2s INFO: /lib/lsb converted to /usr/lib/lsb by /usr merge 5m26.2s INFO: /lib/lsb/init-functions.d converted to /usr/lib/lsb/init-functions.d by /usr merge 5m26.2s INFO: /lib/systemd converted to /usr/lib/systemd by /usr merge 5m26.2s INFO: /lib/systemd/system converted to /usr/lib/systemd/system by /usr merge 5m26.2s INFO: /lib/udev converted to /usr/lib/udev by /usr merge 5m26.2s INFO: /lib/udev/rules.d converted to /usr/lib/udev/rules.d by /usr merge 5m26.2s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 5m26.2s INFO: /lib/x86_64-linux-gnu/security converted to /usr/lib/x86_64-linux-gnu/security by /usr merge 5m26.2s INFO: /lib64 converted to /usr/lib64 by /usr merge 5m26.2s INFO: /sbin converted to /usr/sbin by /usr merge 5m30.6s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', '-ac', '--ignore-obsolete'] 5m37.7s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', '-ac', '--ignore-obsolete'] 5m37.7s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 5m37.7s DUMP: 0.15.6 5m37.7s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 5m37.7s INFO: Running adequate version 0.15.6 now. 5m37.7s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'q2-dada2'] 5m37.9s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'q2-dada2'] 5m37.9s INFO: Running scripts pre_remove 5m37.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 5m38.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 5m38.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 5m38.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 5m38.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 5m50.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 5m50.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 5m51.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 5m51.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 5m51.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 5m51.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_remove_exceptions'] 5m51.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/pre_remove_exceptions'] 5m51.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 5m51.5s DUMP: install ok installed adduser adduser 3.137 install ok installed apt apt 2.7.11 install ok installed base-files base-files 13 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2 install ok installed blt blt 2.5.3+dfsg-7 install ok installed bsdutils bsdutils 1:2.39.3-6 install ok installed ca-certificates ca-certificates 20240203 install ok installed coreutils coreutils 9.4-3+b1 install ok installed cython3 cython3 3.0.8-1 install ok installed dash dash 0.5.12-6 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.16 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.4 install ok installed e2fsprogs e2fsprogs 1.47.0-2+b1 install ok installed findutils findutils 4.9.0-5 install ok installed fontconfig fontconfig 2.15.0-1 install ok installed fontconfig-config fontconfig-config 2.15.0-1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-3 install ok installed fonts-lyx fonts-lyx 2.4.0~RC3-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.5.0-3 install ok installed gcc-11-base:amd64 gcc-11-base 11.4.0-7 install ok installed gcc-13-base:amd64 gcc-13-base 13.2.0-13 install ok installed gcc-14-base:amd64 gcc-14-base 14-20240201-3 install ok installed gcc-9-base:amd64 gcc-9-base 9.5.0-5 install ok installed gpgv gpgv 2.2.40-1.1+b1 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed javascript-common javascript-common 11+nmu1 install ok installed libacl1:amd64 libacl1 2.3.2-1 install ok installed libaec0:amd64 libaec0 1.1.2-1 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.7.11 install ok installed libasan6:amd64 libasan6 11.4.0-7 install ok installed libasan8:amd64 libasan8 14-20240201-3 install ok installed libatomic1:amd64 libatomic1 14-20240201-3 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-2 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-2 install ok installed libblas3:amd64 libblas3 3.12.0-3 install ok installed libblkid1:amd64 libblkid1 2.39.3-6 install ok installed libboost-dev:amd64 libboost-dev 1.83.0.2 install ok installed libboost1.83-dev:amd64 libboost1.83-dev 1.83.0-2+b2 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b3 install ok installed libbsd0:amd64 libbsd0 0.11.8-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5+b2 install ok installed libc-bin libc-bin 2.37-15 install ok installed libc-dev-bin libc-dev-bin 2.37-15 install ok installed libc6:amd64 libc6 2.37-15 install ok installed libc6-dev:amd64 libc6-dev 2.37-15 install ok installed libcairo2:amd64 libcairo2 1.18.0-1+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.4-2 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcom-err2:amd64 libcom-err2 1.47.0-2+b1 install ok installed libcrypt-dev:amd64 libcrypt-dev 1:4.4.36-4 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libcurl4:amd64 libcurl4 8.6.0-2 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-3 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg2-4+b1 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.271 install ok installed libdeflate0:amd64 libdeflate0 1.19-1 install ok installed libexpat1:amd64 libexpat1 2.6.0-1 install ok installed libext2fs2:amd64 libext2fs2 1.47.0-2+b1 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libffi8:amd64 libffi8 3.4.4-2 install ok installed libfile-find-rule-perl libfile-find-rule-perl 0.34-3 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-1 install ok installed libfreetype6:amd64 libfreetype6 2.13.2+dfsg-1+b1 install ok installed libfribidi0:amd64 libfribidi0 1.0.13-3+b1 install ok installed libgcc-10-dev:amd64 libgcc-10-dev 10.5.0-3 install ok installed libgcc-13-dev:amd64 libgcc-13-dev 13.2.0-13 install ok installed libgcc-s1:amd64 libgcc-s1 14-20240201-3 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-2 install ok installed libgdbm-compat4:amd64 libgdbm-compat4 1.23-5+b1 install ok installed libgdbm6:amd64 libgdbm6 1.23-5+b1 install ok installed libgfortran5:amd64 libgfortran5 14-20240201-3 install ok installed libglib2.0-0:amd64 libglib2.0-0 2.78.4-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30:amd64 libgnutls30 3.8.3-1 install ok installed libgomp1:amd64 libgomp1 14-20240201-3 install ok installed libgpg-error0:amd64 libgpg-error0 1.47-3 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.20.1-5+b1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 8.3.0-2 install ok installed libhdf5-103-1:amd64 libhdf5-103-1 1.10.10+repack-3+b1 install ok installed libhdf5-hl-100:amd64 libhdf5-hl-100 1.10.10+repack-3+b1 install ok installed libhogweed6:amd64 libhogweed6 3.9.1-2 install ok installed libhwasan0:amd64 libhwasan0 14-20240201-3 install ok installed libhwloc15:amd64 libhwloc15 2.10.0-1+b1 install ok installed libice6:amd64 libice6 2:1.0.10-1 install ok installed libicu67:amd64 libicu67 67.1-7 install ok installed libicu72:amd64 libicu72 72.1-4+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libimagequant0:amd64 libimagequant0 2.18.0-1 install ok installed libitm1:amd64 libitm1 14-20240201-3 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-2+b2 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-3 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libjs-popper.js libjs-popper.js 1.16.1+ds-6 install ok installed libk5crypto3:amd64 libk5crypto3 1.20.1-5+b1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.20.1-5+b1 install ok installed libkrb5support0:amd64 libkrb5support0 1.20.1-5+b1 install ok installed liblapack3:amd64 liblapack3 3.12.0-3 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1+b1 install ok installed liblcms2-2:amd64 liblcms2-2 2.14-2+b1 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.57+dfsg-3+deb11u1 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.13+dfsg-5+b3 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-4+b1 install ok installed liblsan0:amd64 liblsan0 14-20240201-3 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-1+b2 install ok installed liblzf1:amd64 liblzf1 3.6-4 install ok installed liblzma5:amd64 liblzma5 5.4.5-0.3 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.39.3-6 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-2 install ok installed libncurses6:amd64 libncurses6 6.4+20240113-1 install ok installed libncursesw6:amd64 libncursesw6 6.4+20240113-1 install ok installed libnettle8:amd64 libnettle8 3.9.1-2 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.59.0-1 install ok installed libnorm1:amd64 libnorm1 1.5.9+dfsg-3 install ok installed libnsl-dev:amd64 libnsl-dev 1.3.0-3 install ok installed libnsl2:amd64 libnsl2 1.3.0-3 install ok installed libnumber-compare-perl libnumber-compare-perl 0.03-3 install ok installed libopenblas-base:amd64 libopenblas-base 0.3.13+ds-3+deb11u1 install ok installed libopenblas0:amd64 libopenblas0 0.3.26+ds-1 install ok installed libopenblas0-pthread:amd64 libopenblas0-pthread 0.3.26+ds-1 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2+b2 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-4 install ok installed libpam-modules:amd64 libpam-modules 1.5.2-9.1+b1 install ok installed libpam-modules-bin libpam-modules-bin 1.5.2-9.1+b1 install ok installed libpam-runtime libpam-runtime 1.5.2-9.1 install ok installed libpam0g:amd64 libpam0g 1.5.2-9.1+b1 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.51.0+ds-4 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.51.0+ds-4 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.51.0+ds-4 install ok installed libpaper-utils libpaper-utils 1.1.29 install ok installed libpaper1:amd64 libpaper1 1.1.29 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4 install ok installed libpcre3:amd64 libpcre3 2:8.39-15 install ok installed libperl5.32:amd64 libperl5.32 5.32.1-4+deb11u3 install ok installed libperl5.38:amd64 libperl5.38 5.38.2-3 install ok installed libpgm-5.3-0:amd64 libpgm-5.3-0 5.3.128~dfsg-2 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.42.2-1 install ok installed libpng16-16:amd64 libpng16-16 1.6.42-1 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-4 install ok installed libprocps8:amd64 libprocps8 2:3.3.17-5 install ok installed libpsl5:amd64 libpsl5 0.21.2-1+b1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.11.6-1 install ok installed libpython3.11-minimal:amd64 libpython3.11-minimal 3.11.8-1 install ok installed libpython3.11-stdlib:amd64 libpython3.11-stdlib 3.11.8-1 install ok installed libpython3.12-minimal:amd64 libpython3.12-minimal 3.12.2-1 install ok installed libpython3.12-stdlib:amd64 libpython3.12-stdlib 3.12.2-1 install ok installed libpython3.9-minimal:amd64 libpython3.9-minimal 3.9.2-1 install ok installed libpython3.9-stdlib:amd64 libpython3.9-stdlib 3.9.2-1 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-6 install ok installed libquadmath0:amd64 libquadmath0 14-20240201-3 install ok installed libraqm0:amd64 libraqm0 0.10.1-1 install ok installed libreadline8:amd64 libreadline8 8.2-3 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b2 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-4+b1 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-4+b1 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsepol2:amd64 libsepol2 3.5-2 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.3.2-0.4 install ok installed libsm6:amd64 libsm6 2:1.2.3-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.39.3-6 install ok installed libsodium23:amd64 libsodium23 1.0.18-1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.45.1-1 install ok installed libss2:amd64 libss2 1.47.0-2+b1 install ok installed libssh2-1:amd64 libssh2-1 1.11.0-4 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libssl3:amd64 libssl3 3.1.5-1 install ok installed libssw0:amd64 libssw0 1.1-14 install ok installed libstdc++-10-dev:amd64 libstdc++-10-dev 10.5.0-3 install ok installed libstdc++-13-dev:amd64 libstdc++-13-dev 13.2.0-13 install ok installed libstdc++6:amd64 libstdc++6 14-20240201-3 install ok installed libsystemd0:amd64 libsystemd0 255.3-2 install ok installed libsz2:amd64 libsz2 1.1.2-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtbb-dev:amd64 libtbb-dev 2021.11.0-2 install ok installed libtbb12:amd64 libtbb12 2021.11.0-2 install ok installed libtbbbind-2-5:amd64 libtbbbind-2-5 2021.11.0-2 install ok installed libtbbmalloc2:amd64 libtbbmalloc2 2021.11.0-2 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.13+dfsg-2+b1 install ok installed libtext-glob-perl libtext-glob-perl 0.11-3 install ok installed libthai-data libthai-data 0.1.29-2 install ok installed libthai0:amd64 libthai0 0.1.29-2 install ok installed libtiff5:amd64 libtiff5 4.2.0-1+deb11u5 install ok installed libtiff6:amd64 libtiff6 4.5.1+git230720-4 install ok installed libtinfo6:amd64 libtinfo6 6.4+20240113-1 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1 install ok installed libtirpc-dev:amd64 libtirpc-dev 1.3.4+ds-1 install ok installed libtirpc3:amd64 libtirpc3 1.3.4+ds-1 install ok installed libtk8.6:amd64 libtk8.6 8.6.13-2+b1 install ok installed libtsan0:amd64 libtsan0 11.4.0-7 install ok installed libtsan2:amd64 libtsan2 14-20240201-3 install ok installed libubsan1:amd64 libubsan1 14-20240201-3 install ok installed libudev1:amd64 libudev1 255.3-2 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libunistring5:amd64 libunistring5 1.1-2 install ok installed libuuid1:amd64 libuuid1 2.39.3-6 install ok installed libuv1:amd64 libuv1 1.46.0-3 install ok installed libwebp6:amd64 libwebp6 0.6.1-2.1+deb11u2 install ok installed libwebp7:amd64 libwebp7 1.3.2-0.4 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.3.2-0.4 install ok installed libwebpmux3:amd64 libwebpmux3 1.3.2-0.4 install ok installed libx11-6:amd64 libx11-6 2:1.8.7-1 install ok installed libx11-data libx11-data 2:1.8.7-1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1 install ok installed libxcb-render0:amd64 libxcb-render0 1.15-1 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.15-1 install ok installed libxcb1:amd64 libxcb1 1.15-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxft2:amd64 libxft2 2.3.6-1+b1 install ok installed libxml2:amd64 libxml2 2.9.14+dfsg-1.3+b2 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1 install ok installed libxt6:amd64 libxt6 1:1.2.1-1.1 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libyajl2:amd64 libyajl2 2.1.0-5+b1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-1 install ok installed libzmq5:amd64 libzmq5 4.3.5-1+b1 install ok installed libzstd1:amd64 libzstd1 1.5.5+dfsg2-2 install ok installed linux-libc-dev linux-libc-dev 6.6.15-2 install ok installed littler littler 0.3.19-1 install ok installed login login 1:4.13+dfsg1-4 install ok installed logsave logsave 1.47.0-2+b1 install ok installed lsb-base lsb-base 11.6 install ok installed mailcap mailcap 3.70+nmu1 install ok installed mawk mawk 1.3.4.20240123-1 install ok installed media-types media-types 10.1.0 install ok installed mime-support mime-support 3.66 install ok installed mount mount 2.39.3-6 install ok installed ncurses-base ncurses-base 6.4+20240113-1 install ok installed ncurses-bin ncurses-bin 6.4+20240113-1 install ok installed netbase netbase 6.4 install ok installed node-fortawesome-fontawesome-free node-fortawesome-fontawesome-free 6.4.2+ds1-1 install ok installed openssl openssl 3.1.5-1 install ok installed passwd passwd 1:4.13+dfsg1-4 install ok installed perl perl 5.38.2-3 install ok installed perl-base perl-base 5.38.2-3 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-4+deb11u3 install ok installed perl-modules-5.38 perl-modules-5.38 5.38.2-3 install ok installed procps procps 2:4.0.4-4 install ok installed python-matplotlib-data python-matplotlib-data 3.6.3-1 install ok installed python3 python3 3.11.6-1 install ok installed python3-appdirs python3-appdirs 1.4.4-4 install ok installed python3-asttokens python3-asttokens 2.4.1-1 install ok installed python3-attr python3-attr 23.2.0-1 install ok installed python3-backcall python3-backcall 0.2.0-4 install ok installed python3-bcrypt python3-bcrypt 3.2.2-1 install ok installed python3-bibtexparser python3-bibtexparser 2.0.0b5+really1.4.1-1 install ok installed python3-biom-format python3-biom-format 2.1.15.2-3 install ok installed python3-blinker python3-blinker 1.7.0-1 install ok installed python3-brotli python3-brotli 1.1.0-2+b3 install ok installed python3-cachecontrol python3-cachecontrol 0.14.0-1 install ok installed python3-certifi python3-certifi 2023.11.17-1 install ok installed python3-cffi-backend:amd64 python3-cffi-backend 1.16.0-2+b1 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-1 install ok installed python3-charset-normalizer python3-charset-normalizer 3.3.2-1 install ok installed python3-click python3-click 8.1.6-1 install ok installed python3-colorama python3-colorama 0.4.6-4 install ok installed python3-contourpy python3-contourpy 1.0.7-1+b2 install ok installed python3-cryptography python3-cryptography 41.0.7-3 install ok installed python3-cycler python3-cycler 0.11.0-1 install ok installed python3-dateutil python3-dateutil 2.8.2-3 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-dill python3-dill 0.3.8-1 install ok installed python3-distutils python3-distutils 3.11.5-1 install ok installed python3-executing python3-executing 2.0.1-0.1 install ok installed python3-flask python3-flask 3.0.2-1 install ok installed python3-flask-sqlalchemy python3-flask-sqlalchemy 3.0.3-1 install ok installed python3-flufl.lock python3-flufl.lock 5.0.1-5 install ok installed python3-fonttools python3-fonttools 4.46.0-1 install ok installed python3-fs python3-fs 2.4.16-3 install ok installed python3-future python3-future 0.18.2-6 install ok installed python3-globus-sdk python3-globus-sdk 3.37.0-1 install ok installed python3-greenlet python3-greenlet 3.0.1-2 install ok installed python3-h5py python3-h5py 3.10.0-1 install ok installed python3-h5py-serial python3-h5py-serial 3.10.0-1 install ok installed python3-hdmedians python3-hdmedians 0.14.2-5.1 install ok installed python3-idna python3-idna 3.6-2 install ok installed python3-ijson python3-ijson 3.2.3-1 install ok installed python3-ipython python3-ipython 8.20.0-1 install ok installed python3-ipython-genutils python3-ipython-genutils 0.2.0-6 install ok installed python3-itsdangerous python3-itsdangerous 2.1.2-4 install ok installed python3-jedi python3-jedi 0.19.1+ds1-1 install ok installed python3-jinja2 python3-jinja2 3.1.2-1 install ok installed python3-joblib python3-joblib 1.3.2-1 install ok installed python3-jwt python3-jwt 2.7.0-1 install ok installed python3-kiwisolver python3-kiwisolver 1.4.4-1+b2 install ok installed python3-lib2to3 python3-lib2to3 3.11.5-1 install ok installed python3-lockfile python3-lockfile 1:0.12.2-3 install ok installed python3-lxml:amd64 python3-lxml 5.1.0-1 install ok installed python3-lz4 python3-lz4 4.0.2+dfsg-1+b3 install ok installed python3-markupsafe python3-markupsafe 2.1.5-1 install ok installed python3-matplotlib python3-matplotlib 3.6.3-1+b2 install ok installed python3-matplotlib-inline python3-matplotlib-inline 0.1.6-2 install ok installed python3-minimal python3-minimal 3.11.6-1 install ok installed python3-mpmath python3-mpmath 1.2.1-2 install ok installed python3-msgpack python3-msgpack 1.0.3-3+b1 install ok installed python3-nacl python3-nacl 1.5.0-4 install ok installed python3-natsort python3-natsort 8.0.2-2 install ok installed python3-networkx python3-networkx 2.8.8-1 install ok installed python3-numpy python3-numpy 1:1.24.2-2 install ok installed python3-packaging python3-packaging 23.2-1 install ok installed python3-pandas python3-pandas 2.1.4+dfsg-4 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.1.4+dfsg-4 install ok installed python3-paramiko python3-paramiko 2.12.0-2 install ok installed python3-parsl python3-parsl 2024.02.12+ds-1 install ok installed python3-parso python3-parso 0.8.3-1 install ok installed python3-pexpect python3-pexpect 4.9-2 install ok installed python3-pickleshare python3-pickleshare 0.7.5-5 install ok installed python3-pil:amd64 python3-pil 10.2.0-1 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 10.2.0-1 install ok installed python3-pkg-resources python3-pkg-resources 68.1.2-2 install ok installed python3-prompt-toolkit python3-prompt-toolkit 3.0.43-1 install ok installed python3-psutil python3-psutil 5.9.8-1 install ok installed python3-ptyprocess python3-ptyprocess 0.7.0-5 install ok installed python3-public python3-public 4.0-2 install ok installed python3-pure-eval python3-pure-eval 0.2.2-1 install ok installed python3-py python3-py 1.11.0-2 install ok installed python3-pygments python3-pygments 2.17.2+dfsg-1 install ok installed python3-pyparsing python3-pyparsing 3.1.1-1 install ok installed python3-requests python3-requests 2.31.0+dfsg-1 install ok installed python3-scipy python3-scipy 1.11.4-3 install ok installed python3-setproctitle:amd64 python3-setproctitle 1.3.3-1+b1 install ok installed python3-setuptools python3-setuptools 68.1.2-2 install ok installed python3-six python3-six 1.16.0-4 install ok installed python3-skbio python3-skbio 0.5.9-4 install ok installed python3-sklearn python3-sklearn 1.4.1.post1+dfsg-1 install ok installed python3-sklearn-lib:amd64 python3-sklearn-lib 1.4.1.post1+dfsg-1 install ok installed python3-sqlalchemy python3-sqlalchemy 1.4.50+ds1-1 install ok installed python3-stack-data python3-stack-data 0.6.3-1 install ok installed python3-sympy python3-sympy 1.12-7 install ok installed python3-tblib python3-tblib 3.0.0-3 install ok installed python3-threadpoolctl python3-threadpoolctl 3.1.0-1 install ok installed python3-tk:amd64 python3-tk 3.11.5-1 install ok installed python3-tomlkit python3-tomlkit 0.12.3-1 install ok installed python3-traitlets python3-traitlets 5.5.0-2 install ok installed python3-typeguard python3-typeguard 4.1.5-1 install ok installed python3-typeshed python3-typeshed 0.0~git20231111.6764465-3 install ok installed python3-typing-extensions python3-typing-extensions 4.9.0-1 install ok installed python3-tz python3-tz 2024.1-1 install ok installed python3-tzlocal python3-tzlocal 5.2-1.1 install ok installed python3-ufolib2 python3-ufolib2 0.16.0+dfsg1-1 install ok installed python3-unicodedata2 python3-unicodedata2 15.1.0+ds-1+b1 install ok installed python3-urllib3 python3-urllib3 1.26.18-2 install ok installed python3-wcwidth python3-wcwidth 0.2.5+dfsg1-1.1 install ok installed python3-werkzeug python3-werkzeug 3.0.1-2 install ok installed python3-yaml python3-yaml 6.0.1-2 install ok installed python3-zmq python3-zmq 24.0.1-5+b1 install ok installed python3.11 python3.11 3.11.8-1 install ok installed python3.11-minimal python3.11-minimal 3.11.8-1 install ok installed python3.12 python3.12 3.12.2-1 install ok installed python3.12-minimal python3.12-minimal 3.12.2-1 install ok installed python3.9 python3.9 3.9.2-1 install ok installed python3.9-minimal python3.9-minimal 3.9.2-1 install ok installed q2-dada2 q2-dada2 2024.2.0-1 install ok installed q2-types q2-types 2024.2.0-1 install ok installed qiime qiime 2024.2.0-1 install ok installed r-base-core r-base-core 4.3.2-1 install ok installed r-bioc-biobase r-bioc-biobase 2.62.0-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.48.1-2 install ok installed r-bioc-biocparallel r-bioc-biocparallel 1.36.0-1 install ok installed r-bioc-biostrings r-bioc-biostrings 2.70.2+dfsg-1 install ok installed r-bioc-dada2 r-bioc-dada2 1.30.0+dfsg-1 install ok installed r-bioc-delayedarray r-bioc-delayedarray 0.28.0+dfsg-1 install ok installed r-bioc-genomeinfodb r-bioc-genomeinfodb 1.38.6+dfsg-1 install ok installed r-bioc-genomeinfodbdata r-bioc-genomeinfodbdata 1.2.11-2 install ok installed r-bioc-genomicalignments r-bioc-genomicalignments 1.38.2-1 install ok installed r-bioc-genomicranges r-bioc-genomicranges 1.54.1+dfsg-1 install ok installed r-bioc-iranges r-bioc-iranges 2.36.0-1 install ok installed r-bioc-matrixgenerics r-bioc-matrixgenerics 1.14.0-1 install ok installed r-bioc-rhtslib r-bioc-rhtslib 2.4.1+dfsg-2 install ok installed r-bioc-rsamtools r-bioc-rsamtools 2.18.0+dfsg-1 install ok installed r-bioc-s4arrays r-bioc-s4arrays 1.2.0+dfsg-1 install ok installed r-bioc-s4vectors r-bioc-s4vectors 0.40.2+dfsg-1 install ok installed r-bioc-shortread r-bioc-shortread 1.60.0-2 install ok installed r-bioc-sparsearray r-bioc-sparsearray 1.2.3+dfsg-1 install ok installed r-bioc-summarizedexperiment r-bioc-summarizedexperiment 1.32.0+dfsg-1 install ok installed r-bioc-xvector r-bioc-xvector 0.42.0-1 install ok installed r-bioc-zlibbioc r-bioc-zlibbioc 1.48.0+dfsg-1 install ok installed r-cran-abind r-cran-abind 1.4-5-2 install ok installed r-cran-assertthat r-cran-assertthat 0.2.1-2 install ok installed r-cran-bh r-cran-bh 1.84.0-1 install ok installed r-cran-bitops r-cran-bitops 1.0-7-1 install ok installed r-cran-brio r-cran-brio 1.1.4-1 install ok installed r-cran-callr r-cran-callr 3.7.3-2 install ok installed r-cran-cli r-cran-cli 3.6.2-1 install ok installed r-cran-codetools r-cran-codetools 0.2-19-1 install ok installed r-cran-colorspace r-cran-colorspace 2.1-0+dfsg-1 install ok installed r-cran-cpp11 r-cran-cpp11 0.4.7-1 install ok installed r-cran-crayon r-cran-crayon 1.5.2-1 install ok installed r-cran-deldir r-cran-deldir 2.0-2-1 install ok installed r-cran-desc r-cran-desc 1.4.3-1 install ok installed r-cran-diffobj r-cran-diffobj 0.3.5-1+b1 install ok installed r-cran-digest r-cran-digest 0.6.34-1 install ok installed r-cran-ellipsis r-cran-ellipsis 0.3.2-2 install ok installed r-cran-evaluate r-cran-evaluate 0.23-1 install ok installed r-cran-fansi r-cran-fansi 1.0.5-1 install ok installed r-cran-farver r-cran-farver 2.1.1-1 install ok installed r-cran-formatr r-cran-formatr 1.14-1 install ok installed r-cran-fs r-cran-fs 1.6.3+dfsg-1 install ok installed r-cran-futile.logger r-cran-futile.logger 1.4.3-4 install ok installed r-cran-futile.options r-cran-futile.options 1.0.1-3 install ok installed r-cran-getopt r-cran-getopt 1.20.4-1 install ok installed r-cran-ggplot2 r-cran-ggplot2 3.4.4+dfsg-1 install ok installed r-cran-glue r-cran-glue 1.7.0-1 install ok installed r-cran-gtable r-cran-gtable 0.3.4+dfsg-1 install ok installed r-cran-hwriter r-cran-hwriter 1.3.2.1-1 install ok installed r-cran-interp r-cran-interp 1.1-6-1 install ok installed r-cran-isoband r-cran-isoband 0.2.7-1 install ok installed r-cran-jpeg r-cran-jpeg 0.1-10-1 install ok installed r-cran-jsonlite r-cran-jsonlite 1.8.8+dfsg-1 install ok installed r-cran-labeling r-cran-labeling 0.4.3-1 install ok installed r-cran-lambda.r r-cran-lambda.r 1.2.4-2 install ok installed r-cran-lattice r-cran-lattice 0.22-5-1 install ok installed r-cran-latticeextra r-cran-latticeextra 0.6-30-1 install ok installed r-cran-lifecycle r-cran-lifecycle 1.0.4+dfsg-1 install ok installed r-cran-littler r-cran-littler 0.3.19-1 install ok installed r-cran-magrittr r-cran-magrittr 2.0.3-1 install ok installed r-cran-mass r-cran-mass 7.3-60.0.1-1 install ok installed r-cran-matrix r-cran-matrix 1.6-5-1 install ok installed r-cran-matrixstats r-cran-matrixstats 1.2.0-1 install ok installed r-cran-mgcv r-cran-mgcv 1.9-1-1 install ok installed r-cran-munsell r-cran-munsell 0.5.0-2 install ok installed r-cran-nlme r-cran-nlme 3.1.164-1 install ok installed r-cran-optparse r-cran-optparse 1.7.4-1 install ok installed r-cran-pillar r-cran-pillar 1.9.0+dfsg-1 install ok installed r-cran-pkgbuild r-cran-pkgbuild 1.4.3-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-2 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.2.3-1 install ok installed r-cran-pkgload r-cran-pkgload 1.3.4-1 install ok installed r-cran-plyr r-cran-plyr 1.8.9-1 install ok installed r-cran-png r-cran-png 0.1-8-1 install ok installed r-cran-praise r-cran-praise 1.0.0-4 install ok installed r-cran-prettyunits r-cran-prettyunits 1.2.0-1 install ok installed r-cran-processx r-cran-processx 3.8.3-1 install ok installed r-cran-ps r-cran-ps 1.7.6-1 install ok installed r-cran-r6 r-cran-r6 2.5.1-1 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-3-1 install ok installed r-cran-rcpp r-cran-rcpp 1.0.12-1 install ok installed r-cran-rcppeigen r-cran-rcppeigen 0.3.3.9.4-1 install ok installed r-cran-rcppparallel r-cran-rcppparallel 5.1.7+dfsg-3 install ok installed r-cran-rcurl r-cran-rcurl 1.98-1.14+dfsg-1 install ok installed r-cran-rematch2 r-cran-rematch2 2.1.2-2 install ok installed r-cran-reshape2 r-cran-reshape2 1.4.4-2 install ok installed r-cran-rlang r-cran-rlang 1.1.3-1 install ok installed r-cran-rprojroot r-cran-rprojroot 2.0.4-1 install ok installed r-cran-rstudioapi r-cran-rstudioapi 0.15.0-1 install ok installed r-cran-scales r-cran-scales 1.3.0-1 install ok installed r-cran-snow r-cran-snow 1:0.4.4-2 install ok installed r-cran-stringi r-cran-stringi 1.8.3-1 install ok installed r-cran-stringr r-cran-stringr 1.5.1-1 install ok installed r-cran-testthat r-cran-testthat 3.2.1-1 install ok installed r-cran-tibble r-cran-tibble 3.2.1+dfsg-2 install ok installed r-cran-utf8 r-cran-utf8 1.2.4-1 install ok installed r-cran-vctrs r-cran-vctrs 0.6.5-1 install ok installed r-cran-viridislite r-cran-viridislite 0.4.2-2 install ok installed r-cran-waldo r-cran-waldo 0.5.2-1 install ok installed r-cran-withr r-cran-withr 3.0.0+dfsg-1 install ok installed readline-common readline-common 8.2-3 install ok installed rpcsvc-proto rpcsvc-proto 1.4.3-1 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.22 install ok installed sysvinit-utils sysvinit-utils 3.08-6 install ok installed tar tar 1.35+dfsg-3 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-7 install ok installed ttf-bitstream-vera ttf-bitstream-vera 1.10-8.2 install ok installed tzdata tzdata 2024a-1 install ok installed ucf ucf 3.0043+nmu1 install ok installed unicode-data unicode-data 15.1.0-1 install ok installed unzip unzip 6.0-28 install ok installed usrmerge usrmerge 39 install ok installed util-linux util-linux 2.39.3-6 install ok installed x11-common x11-common 1:7.7+23 install ok installed xdg-utils xdg-utils 1.1.3-4.1 install ok installed zip zip 3.0-13 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg-3+b1 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.3.dfsg-3+b1 5m51.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 5m51.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-get', 'remove', 'blt', 'ca-certificates', 'cython3', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-glyphicons-halflings', 'fonts-lyx', 'gcc-11-base:amd64', 'gcc-13-base:amd64', 'javascript-common', 'libaec0:amd64', 'libasan6:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcrypt-dev:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-10-dev:amd64', 'libgcc-13-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libhwasan0:amd64', 'libhwloc15:amd64', 'libice6:amd64', 'libicu67:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-popper.js', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmpdec3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnorm1:amd64', 'libnsl-dev:amd64', 'libopenblas-base:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libperl5.32:amd64', 'libpgm-5.3-0:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libproc2-0:amd64', 'libprocps8:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssw0:amd64', 'libstdc++-10-dev:amd64', 'libstdc++-13-dev:amd64', 'libsz2:amd64', 'libtbb-dev:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtiff6:amd64', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyajl2:amd64', 'libyaml-0-2:amd64', 'libzmq5:amd64', 'linux-libc-dev', 'littler', 'mailcap', 'media-types', 'mime-support', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'perl-modules-5.32', 'procps', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-asttokens', 'python3-attr', 'python3-backcall', 'python3-bcrypt', 'python3-bibtexparser', 'python3-biom-format', 'python3-blinker', 'python3-brotli', 'python3-cachecontrol', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-contourpy', 'python3-cryptography', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dill', 'python3-distutils', 'python3-executing', 'python3-flask', 'python3-flask-sqlalchemy', 'python3-flufl.lock', 'python3-fonttools', 'python3-fs', 'python3-future', 'python3-globus-sdk', 'python3-greenlet', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-ijson', 'python3-ipython', 'python3-ipython-genutils', 'python3-itsdangerous', 'python3-jedi', 'python3-jinja2', 'python3-joblib', 'python3-jwt', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-mpmath', 'python3-msgpack', 'python3-nacl', 'python3-natsort', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-paramiko', 'python3-parsl', 'python3-parso', 'python3-pexpect', 'python3-pickleshare', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-prompt-toolkit', 'python3-psutil', 'python3-ptyprocess', 'python3-public', 'python3-pure-eval', 'python3-py', 'python3-pygments', 'python3-pyparsing', 'python3-requests', 'python3-scipy', 'python3-setproctitle:amd64', 'python3-setuptools', 'python3-six', 'python3-skbio', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-sqlalchemy', 'python3-stack-data', 'python3-sympy', 'python3-tblib', 'python3-threadpoolctl', 'python3-tk:amd64', 'python3-tomlkit', 'python3-traitlets', 'python3-typeguard', 'python3-typeshed', 'python3-typing-extensions', 'python3-tz', 'python3-tzlocal', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wcwidth', 'python3-werkzeug', 'python3-yaml', 'python3-zmq', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'python3.9', 'python3.9-minimal', 'q2-types', 'qiime', 'r-base-core', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-dada2', 'r-bioc-delayedarray', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-shortread', 'r-bioc-sparsearray', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-assertthat', 'r-cran-bh', 'r-cran-bitops', 'r-cran-brio', 'r-cran-callr', 'r-cran-cli', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-deldir', 'r-cran-desc', 'r-cran-diffobj', 'r-cran-digest', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-formatr', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-getopt', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-hwriter', 'r-cran-interp', 'r-cran-isoband', 'r-cran-jpeg', 'r-cran-jsonlite', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-optparse', 'r-cran-pillar', 'r-cran-pkgbuild', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-pkgload', 'r-cran-plyr', 'r-cran-png', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-processx', 'r-cran-ps', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppeigen', 'r-cran-rcppparallel', 'r-cran-rcurl', 'r-cran-rematch2', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-scales', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-waldo', 'r-cran-withr', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'unicode-data', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64', 'q2-dada2'] 6m16.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: blt ca-certificates cython3 fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-glyphicons-halflings fonts-lyx gcc-11-base gcc-13-base javascript-common libaec0 libasan6 libasan8 libatomic1 libblas3 libboost-dev libboost1.83-dev libbrotli1 libbsd0 libc-dev-bin libc6-dev libcairo2 libcrypt-dev libcurl4 libdatrie1 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgcc-10-dev libgcc-13-dev libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libhwasan0 libhwloc15 libice6 libicu67 libicu72 libimagequant0 libitm1 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-jquery libjs-jquery-ui libjs-popper.js liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 libldap-2.5-0 liblerc4 liblsan0 liblzf1 libmpdec3 libncurses6 libncursesw6 libnghttp2-14 libnorm1 libnsl-dev libopenblas-base libopenblas0 libopenblas0-pthread libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libperl5.32 libpgm-5.3-0 libpixman-1-0 libpng16-16 libproc2-0 libprocps8 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libpython3.9-minimal libpython3.9-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsodium23 libsqlite3-0 libssh2-1 libssw0 libstdc++-10-dev libstdc++-13-dev libsz2 libtbb-dev libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libthai-data libthai0 libtiff5 libtiff6 libtirpc-dev libtk8.6 libtsan0 libtsan2 libubsan1 libuv1 libwebp6 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 libxt6 libyajl2 libyaml-0-2 libzmq5 linux-libc-dev littler mailcap media-types mime-support netbase node-fortawesome-fontawesome-free openssl perl-modules-5.32 procps python-matplotlib-data python3 python3-appdirs python3-asttokens python3-attr python3-backcall python3-bcrypt python3-bibtexparser python3-biom-format python3-blinker python3-brotli python3-cachecontrol python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-click python3-colorama python3-contourpy python3-cryptography python3-cycler python3-dateutil python3-decorator python3-dill python3-distutils python3-executing python3-flask python3-flask-sqlalchemy python3-flufl.lock python3-fonttools python3-fs python3-future python3-globus-sdk python3-greenlet python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-ijson python3-ipython python3-ipython-genutils python3-itsdangerous python3-jedi python3-jinja2 python3-joblib python3-jwt python3-kiwisolver python3-lib2to3 python3-lockfile python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-matplotlib-inline python3-minimal python3-mpmath python3-msgpack python3-nacl python3-natsort python3-networkx python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-paramiko python3-parsl python3-parso python3-pexpect python3-pickleshare python3-pil python3-pil.imagetk python3-pkg-resources python3-prompt-toolkit python3-psutil python3-ptyprocess python3-public python3-pure-eval python3-py python3-pygments python3-pyparsing python3-requests python3-scipy python3-setproctitle python3-setuptools python3-six python3-skbio python3-sklearn python3-sklearn-lib python3-sqlalchemy python3-stack-data python3-sympy python3-tblib python3-threadpoolctl python3-tk python3-tomlkit python3-traitlets python3-typeguard python3-typeshed python3-typing-extensions python3-tz python3-tzlocal python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-wcwidth python3-werkzeug python3-yaml python3-zmq python3.11 python3.11-minimal python3.12 python3.12-minimal python3.9 python3.9-minimal q2-dada2 q2-types qiime r-base-core r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-dada2 r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4arrays r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-assertthat r-cran-bh r-cran-bitops r-cran-brio r-cran-callr r-cran-cli r-cran-codetools r-cran-colorspace r-cran-cpp11 r-cran-crayon r-cran-deldir r-cran-desc r-cran-diffobj r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-getopt r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-hwriter r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jsonlite r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-optparse r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-ps r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcppparallel r-cran-rcurl r-cran-rematch2 r-cran-reshape2 r-cran-rlang r-cran-rprojroot r-cran-rstudioapi r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-testthat r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr readline-common rpcsvc-proto sensible-utils tk8.6-blt2.5 ttf-bitstream-vera ucf unicode-data unzip x11-common xdg-utils zip zlib1g-dev 0 upgraded, 0 newly installed, 383 to remove and 0 not upgraded. After this operation, 1426 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73895 files and directories currently installed.) Removing q2-dada2 (2024.2.0-1) ... Removing q2-types (2024.2.0-1) ... Removing python3-skbio (0.5.9-4) ... Removing python3-matplotlib (3.6.3-1+b2) ... Removing python3-pil.imagetk:amd64 (10.2.0-1) ... Removing python3-pil:amd64 (10.2.0-1) ... Removing python3-tk:amd64 (3.11.5-1) ... Removing blt (2.5.3+dfsg-7) ... Removing qiime (2024.2.0-1) ... Removing python3-parsl (2024.02.12+ds-1) ... Removing python3-globus-sdk (3.37.0-1) ... Removing r-bioc-dada2 (1.30.0+dfsg-1) ... Removing r-cran-ggplot2 (3.4.4+dfsg-1) ... Removing r-cran-scales (1.3.0-1) ... Removing r-bioc-shortread (1.60.0-2) ... Removing r-bioc-genomicalignments (1.38.2-1) ... Removing r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... Removing r-bioc-delayedarray (0.28.0+dfsg-1) ... Removing r-bioc-sparsearray (1.2.3+dfsg-1) ... Removing r-bioc-s4arrays (1.2.0+dfsg-1) ... Removing r-cran-abind (1.4-5-2) ... Removing cython3 (3.0.8-1) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-7) ... Removing python-matplotlib-data (3.6.3-1) ... Removing libjs-bootstrap (3.4.1+dfsg-3) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Removing fonts-lyx (2.4.0~RC3-1) ... dpkg: warning: while removing fonts-lyx, directory '/usr/share/fonts/truetype/lyx' not empty so not removed Removing libstdc++-10-dev:amd64 (10.5.0-3) ... Removing libgcc-10-dev:amd64 (10.5.0-3) ... Removing libtsan0:amd64 (11.4.0-7) ... Removing libasan6:amd64 (11.4.0-7) ... Removing gcc-11-base:amd64 (11.4.0-7) ... Removing r-bioc-rsamtools (2.18.0+dfsg-1) ... Removing r-bioc-biocparallel (1.36.0-1) ... Removing r-cran-bh (1.84.0-1) ... Removing libboost-dev:amd64 (1.83.0.2) ... Removing libboost1.83-dev:amd64 (1.83.0-2+b2) ... Removing libstdc++-13-dev:amd64 (13.2.0-13) ... Removing libgcc-13-dev:amd64 (13.2.0-13) ... Removing gcc-13-base:amd64 (13.2.0-13) ... Removing libjs-popper.js (1.16.1+ds-6) ... Removing javascript-common (11+nmu1) ... Removing python3-biom-format (2.1.15.2-3) ... Removing python3-h5py (3.10.0-1) ... Removing python3-h5py-serial (3.10.0-1) ... Removing libhdf5-hl-100:amd64 (1.10.10+repack-3+b1) ... Removing libhdf5-103-1:amd64 (1.10.10+repack-3+b1) ... Removing libsz2:amd64 (1.1.2-1) ... Removing libaec0:amd64 (1.1.2-1) ... Removing libasan8:amd64 (14-20240201-3) ... Removing libatomic1:amd64 (14-20240201-3) ... Removing python3-sklearn (1.4.1.post1+dfsg-1) ... Removing r-cran-latticeextra (0.6-30-1) ... Removing r-cran-interp (1.1-6-1) ... Removing r-cran-rcppeigen (0.3.3.9.4-1) ... Removing r-cran-mgcv (1.9-1-1) ... Removing r-cran-matrix (1.6-5-1) ... Removing python3-sklearn-lib:amd64 (1.4.1.post1+dfsg-1) ... Removing python3-pandas (2.1.4+dfsg-4) ... Removing python3-pandas-lib:amd64 (2.1.4+dfsg-4) ... Removing libblas3:amd64 (3.12.0-3) ... Removing libraqm0:amd64 (0.10.1-1) ... Removing r-bioc-genomicranges (1.54.1+dfsg-1) ... Removing python3-zmq (24.0.1-5+b1) ... Removing libzmq5:amd64 (4.3.5-1+b1) ... Removing r-bioc-biostrings (2.70.2+dfsg-1) ... Removing r-bioc-xvector (0.42.0-1) ... Removing r-bioc-rhtslib (2.4.1+dfsg-2) ... Removing r-bioc-zlibbioc (1.48.0+dfsg-1) ... Removing zlib1g-dev:amd64 (1:1.3.dfsg-3+b1) ... Removing libc6-dev:amd64 (2.37-15) ... Removing libc-dev-bin (2.37-15) ... Removing libcrypt-dev:amd64 (1:4.4.36-4) ... Removing libtiff5:amd64 (4.2.0-1+deb11u5) ... Removing python3.9 (3.9.2-1) ... Removing python3.9-minimal (3.9.2-1) ... Removing libopenblas-base:amd64 (0.3.13+ds-3+deb11u1) ... Removing libopenblas0:amd64 (0.3.26+ds-1) ... Removing liblapack3:amd64 (3.12.0-3) ... Removing libimagequant0:amd64 (2.18.0-1) ... Removing libhwasan0:amd64 (14-20240201-3) ... Removing r-cran-rcppparallel (5.1.7+dfsg-3) ... Removing libtbb-dev:amd64 (2021.11.0-2) ... Removing libtbb12:amd64 (2021.11.0-2) ... Removing libtbbbind-2-5:amd64 (2021.11.0-2) ... Removing libhwloc15:amd64 (2.10.0-1+b1) ... Removing libicu67:amd64 (67.1-7) ... Removing r-cran-reshape2 (1.4.4-2) ... Removing r-cran-stringr (1.5.1-1) ... Removing r-cran-stringi (1.8.3-1) ... Removing libitm1:amd64 (14-20240201-3) ... Removing r-cran-jpeg (0.1-10-1) ... Removing python3-flask-sqlalchemy (3.0.3-1) ... Removing python3-flask (3.0.2-1) ... Removing python3-werkzeug (3.0.1-2) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing liblcms2-2:amd64 (2.14-2+b1) ... Removing libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Removing liblsan0:amd64 (14-20240201-3) ... Removing liblzf1:amd64 (3.6-4) ... Removing libpython3.9-stdlib:amd64 (3.9.2-1) ... Removing libmpdec3:amd64 (2.5.1-2) ... Removing libncurses6:amd64 (6.4+20240113-1) ... Removing python3-yaml (6.0.1-2) ... Removing python3-ipython (8.20.0-1) ... Removing python3-setuptools (68.1.2-2) ... Removing python3-distutils (3.11.5-1) ... Removing python3-sqlalchemy (1.4.50+ds1-1) ... Removing libnorm1:amd64 (1.5.9+dfsg-3) ... Removing libnsl-dev:amd64 (1.3.0-3) ... Removing libopenjp2-7:amd64 (2.5.0-2+b2) ... Removing libperl5.32:amd64 (5.32.1-4+deb11u3) ... Removing libpgm-5.3-0:amd64 (5.3.128~dfsg-2) ... Removing r-cran-png (0.1-8-1) ... Removing python3-joblib (1.3.2-1) ... Removing procps (2:4.0.4-4) ... Removing libproc2-0:amd64 (2:4.0.4-4) ... Removing libprocps8:amd64 (2:3.3.17-5) ... Removing libpython3.9-minimal:amd64 (3.9.2-1) ... Removing libqhull-r8.0:amd64 (2020.2-6) ... Removing libquadmath0:amd64 (14-20240201-3) ... Removing libwebpmux3:amd64 (1.3.2-0.4) ... Removing libwebpdemux2:amd64 (1.3.2-0.4) ... Removing python3-paramiko (2.12.0-2) ... Removing python3-nacl (1.5.0-4) ... Removing libsodium23:amd64 (1.0.18-1) ... Removing libssw0:amd64 (1.1-14) ... Removing libtbbmalloc2:amd64 (2021.11.0-2) ... Removing libtirpc-dev:amd64 (1.3.4+ds-1) ... Removing libtsan2:amd64 (14-20240201-3) ... Removing libubsan1:amd64 (14-20240201-3) ... Removing r-cran-testthat (3.2.1-1) ... Removing r-cran-pkgload (1.3.4-1) ... Removing r-cran-fs (1.6.3+dfsg-1) ... Removing libuv1:amd64 (1.46.0-3) ... Removing libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Removing python3-ijson (3.2.3-1) ... Removing libyajl2:amd64 (2.1.0-5+b1) ... Removing libyaml-0-2:amd64 (0.2.5-1) ... Removing linux-libc-dev (6.6.15-2) ... Removing r-cran-plyr (1.8.9-1) ... Removing r-cran-rcpp (1.0.12-1) ... Removing littler (0.3.19-1) ... Removing mime-support (3.66) ... Removing mailcap (3.70+nmu1) ... Removing node-fortawesome-fontawesome-free (6.4.2+ds1-1) ... Removing perl-modules-5.32 (5.32.1-4+deb11u3) ... Removing python3-stack-data (0.6.3-1) ... Removing python3-executing (2.0.1-0.1) ... Removing python3-asttokens (2.4.1-1) ... Removing python3-backcall (0.2.0-4) ... Removing python3-bcrypt (3.2.2-1) ... Removing python3-bibtexparser (2.0.0b5+really1.4.1-1) ... Removing python3-blinker (1.7.0-1) ... Removing python3-cachecontrol (0.14.0-1) ... Removing python3-cryptography (41.0.7-3) ... Removing python3-cffi-backend:amd64 (1.16.0-2+b1) ... Removing python3-click (8.1.6-1) ... Removing python3-colorama (0.4.6-4) ... Removing python3-contourpy (1.0.7-1+b2) ... Removing python3-cycler (0.11.0-1) ... Removing python3-dateutil (2.8.2-3) ... Removing python3-dill (0.3.8-1) ... Removing python3-flufl.lock (5.0.1-5) ... Removing python3-future (0.18.2-6) ... Removing python3-greenlet (3.0.1-2) ... Removing python3-hdmedians (0.14.2-5.1) ... Removing python3-ipython-genutils (0.2.0-6) ... Removing python3-itsdangerous (2.1.2-4) ... Removing python3-jedi (0.19.1+ds1-1) ... Removing python3-jinja2 (3.1.2-1) ... Removing python3-jwt (2.7.0-1) ... Removing python3-kiwisolver (1.4.4-1+b2) ... Removing python3-lib2to3 (3.11.5-1) ... Removing python3-lockfile (1:0.12.2-3) ... Removing python3-markupsafe (2.1.5-1) ... Removing python3-matplotlib-inline (0.1.6-2) ... Removing python3-msgpack (1.0.3-3+b1) ... Removing python3-natsort (8.0.2-2) ... Removing python3-networkx (2.8.8-1) ... Removing python3-packaging (23.2-1) ... Removing python3-parso (0.8.3-1) ... Removing python3-pexpect (4.9-2) ... Removing python3-pickleshare (0.7.5-5) ... Removing python3-py (1.11.0-2) ... Removing python3-pygments (2.17.2+dfsg-1) ... Removing python3-prompt-toolkit (3.0.43-1) ... Removing python3-psutil (5.9.8-1) ... Removing python3-ptyprocess (0.7.0-5) ... Removing python3-public (4.0-2) ... Removing python3-pure-eval (0.2.2-1) ... Removing python3-pyparsing (3.1.1-1) ... Removing python3-setproctitle:amd64 (1.3.3-1+b1) ... Removing python3-tblib (3.0.0-3) ... Removing python3-threadpoolctl (3.1.0-1) ... Removing python3-tomlkit (0.12.3-1) ... Removing python3-traitlets (5.5.0-2) ... Removing python3-typeguard (4.1.5-1) ... Removing python3-typeshed (0.0~git20231111.6764465-3) ... Removing python3-typing-extensions (4.9.0-1) ... Removing python3-tzlocal (5.2-1.1) ... Removing python3-wcwidth (0.2.5+dfsg1-1.1) ... Removing r-bioc-biobase (2.62.0-1) ... Removing r-bioc-matrixgenerics (1.14.0-1) ... Removing r-cran-assertthat (0.2.1-2) ... Removing r-cran-brio (1.1.4-1) ... Removing r-cran-pkgbuild (1.4.3-1) ... Removing r-cran-callr (3.7.3-2) ... Removing r-cran-waldo (0.5.2-1) ... Removing r-cran-rematch2 (2.1.2-2) ... Removing r-cran-tibble (3.2.1+dfsg-2) ... Removing r-cran-codetools (0.2-19-1) ... Removing r-cran-munsell (0.5.0-2) ... Removing r-cran-colorspace (2.1-0+dfsg-1) ... Removing r-cran-cpp11 (0.4.7-1) ... Removing r-cran-diffobj (0.3.5-1+b1) ... Removing r-cran-crayon (1.5.2-1) ... Removing r-cran-deldir (2.0-2-1) ... Removing r-cran-desc (1.4.3-1) ... Removing r-cran-digest (0.6.34-1) ... Removing r-cran-ellipsis (0.3.2-2) ... Removing r-cran-evaluate (0.23-1) ... Removing r-cran-pillar (1.9.0+dfsg-1) ... Removing r-cran-fansi (1.0.5-1) ... Removing r-cran-farver (2.1.1-1) ... Removing r-cran-futile.logger (1.4.3-4) ... Removing r-cran-lambda.r (1.2.4-2) ... Removing r-cran-formatr (1.14-1) ... Removing r-cran-futile.options (1.0.1-3) ... Removing r-cran-optparse (1.7.4-1) ... Removing r-cran-getopt (1.20.4-1) ... Removing r-cran-gtable (0.3.4+dfsg-1) ... Removing r-cran-hwriter (1.3.2.1-1) ... Removing r-cran-isoband (0.2.7-1) ... Removing r-cran-jsonlite (1.8.8+dfsg-1) ... Removing r-cran-labeling (0.4.3-1) ... Removing r-cran-nlme (3.1.164-1) ... Removing r-cran-lattice (0.22-5-1) ... Removing r-cran-littler (0.3.19-1) ... Removing r-cran-magrittr (2.0.3-1) ... Removing r-cran-mass (7.3-60.0.1-1) ... Removing r-cran-matrixstats (1.2.0-1) ... Removing r-cran-pkgconfig (2.0.3-2) ... Removing r-cran-pkgkitten (0.2.3-1) ... Removing r-cran-praise (1.0.0-4) ... Removing r-cran-prettyunits (1.2.0-1) ... Removing r-cran-processx (3.8.3-1) ... Removing r-cran-ps (1.7.6-1) ... Removing r-cran-r6 (2.5.1-1) ... Removing r-cran-rprojroot (2.0.4-1) ... Removing r-cran-rstudioapi (0.15.0-1) ... Removing r-cran-snow (1:0.4.4-2) ... Removing r-cran-utf8 (1.2.4-1) ... Removing r-cran-viridislite (0.4.2-2) ... Removing r-cran-withr (3.0.0+dfsg-1) ... Removing rpcsvc-proto (1.4.3-1) ... Removing ttf-bitstream-vera (1.10-8.2) ... dpkg: warning: while removing ttf-bitstream-vera, directory '/usr/share/fonts/truetype/ttf-bitstream-vera' not empty so not removed Removing python3-requests (2.31.0+dfsg-1) ... Removing r-cran-rcolorbrewer (1.1-3-1) ... Removing r-bioc-genomeinfodb (1.38.6+dfsg-1) ... Removing r-cran-rcurl (1.98-1.14+dfsg-1) ... Removing python3-certifi (2023.11.17-1) ... Removing python3-chardet (5.2.0+dfsg-1) ... Removing python3-charset-normalizer (3.3.2-1) ... Removing python3-idna (3.6-2) ... Removing python3-urllib3 (1.26.18-2) ... Removing r-bioc-iranges (2.36.0-1) ... Removing r-bioc-s4vectors (0.40.2+dfsg-1) ... Removing r-bioc-biocgenerics (0.48.1-2) ... Removing r-bioc-genomeinfodbdata (1.2.11-2) ... Removing r-cran-bitops (1.0-7-1) ... Removing r-cran-vctrs (0.6.5-1) ... Removing r-cran-lifecycle (1.0.4+dfsg-1) ... Removing r-cran-glue (1.7.0-1) ... Removing r-cran-rlang (1.1.3-1) ... Removing r-cran-cli (3.6.2-1) ... Removing r-base-core (4.3.2-1) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... Removing libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... Removing libpango-1.0-0:amd64 (1.51.0+ds-4) ... Removing fontconfig (2.15.0-1) ... Removing libtk8.6:amd64 (8.6.13-2+b1) ... Removing libxft2:amd64 (2.3.6-1+b1) ... Removing libcairo2:amd64 (1.18.0-1+b1) ... Removing libfontconfig1:amd64 (2.15.0-1) ... Removing fontconfig-config (2.15.0-1) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing libharfbuzz0b:amd64 (8.3.0-2) ... Removing libfreetype6:amd64 (2.13.2+dfsg-1+b1) ... Removing libcurl4:amd64 (8.6.0-2) ... Removing libbrotli1:amd64 (1.1.0-2+b3) ... Removing libxt6:amd64 (1:1.2.1-1.1) ... Removing libthai0:amd64 (0.1.29-2) ... Removing libdatrie1:amd64 (0.2.13-3) ... Removing libtiff6:amd64 (4.5.1+git230720-4) ... Removing libdeflate0:amd64 (1.19-1) ... Removing libfribidi0:amd64 (1.0.13-3+b1) ... Removing libglib2.0-0:amd64 (2.78.4-1) ... Removing libgomp1:amd64 (14-20240201-3) ... Removing libgraphite2-3:amd64 (1.3.14-2) ... Removing libsm6:amd64 (2:1.2.3-1) ... Removing libice6:amd64 (2:1.0.10-1) ... Removing libjbig0:amd64 (2.1-6.1+b1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-2+b2) ... Removing libldap-2.5-0:amd64 (2.5.13+dfsg-5+b3) ... Removing liblerc4:amd64 (4.0.0+ds-4+b1) ... Removing libnghttp2-14:amd64 (1.59.0-1) ... Removing libpaper-utils (1.1.29) ... Removing libpaper1:amd64 (1.1.29) ... Removing libpixman-1-0:amd64 (0.42.2-1) ... Removing libpng16-16:amd64 (1.6.42-1) ... Removing libpsl5:amd64 (0.21.2-1+b1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-4+b1) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-4+b1) ... Removing libwebp7:amd64 (1.3.2-0.4) ... Removing libsharpyuv0:amd64 (1.3.2-0.4) ... Removing libssh2-1:amd64 (1.11.0-4) ... Removing libtcl8.6:amd64 (8.6.13+dfsg-2+b1) ... Removing libthai-data (0.1.29-2) ... Removing libxss1:amd64 (1:1.2.3-1) ... Removing libxcb-shm0:amd64 (1.15-1) ... Removing libxcb-render0:amd64 (1.15-1) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing libxrender1:amd64 (1:0.9.10-1.1) ... Removing openssl (3.1.5-1) ... Removing ucf (3.0043+nmu1) ... Removing sensible-utils (0.0.22) ... Removing unzip (6.0-28) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.1.3-4.1) ... Removing zip (3.0-13) ... Removing libx11-6:amd64 (2:1.8.7-1) ... Removing libxcb1:amd64 (1.15-1) ... Removing libxdmcp6:amd64 (1:1.1.2-3) ... Removing libbsd0:amd64 (0.11.8-1) ... Removing libx11-data (2:1.8.7-1) ... Removing libxau6:amd64 (1:1.0.9-1) ... Removing python3-fonttools (4.46.0-1) ... Removing python3-scipy (1.11.4-3) ... Removing python3-numpy (1:1.24.2-2) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Removing python3.12 (3.12.2-1) ... Removing python3.12-minimal (3.12.2-1) ... Removing libopenblas0-pthread:amd64 (0.3.26+ds-1) ... Removing libgfortran5:amd64 (14-20240201-3) ... Removing python3-lxml:amd64 (5.1.0-1) ... Removing libpython3.12-stdlib:amd64 (3.12.2-1) ... Removing libpython3.12-minimal:amd64 (3.12.2-1) ... Removing libxslt1.1:amd64 (1.1.35-1) ... Removing python3-fs (2.4.16-3) ... Removing python3-appdirs (1.4.4-4) ... Removing python3-brotli (1.1.0-2+b3) ... Removing python3-decorator (5.1.1-5) ... Removing python3-lz4 (4.0.2+dfsg-1+b3) ... Removing python3-sympy (1.12-7) ... Removing python3-mpmath (1.2.1-2) ... Removing python3-pkg-resources (68.1.2-2) ... Removing python3-six (1.16.0-4) ... Removing python3-tz (2024.1-1) ... Removing python3-unicodedata2 (15.1.0+ds-1+b1) ... Removing unicode-data (15.1.0-1) ... Removing python3-ufolib2 (0.16.0+dfsg1-1) ... Removing libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Removing libicu72:amd64 (72.1-4+b1) ... Removing python3-attr (23.2.0-1) ... Removing python3 (3.11.6-1) ... Removing python3.11 (3.11.8-1) ... Removing libpython3-stdlib:amd64 (3.11.6-1) ... Removing python3-minimal (3.11.6-1) ... Removing python3.11-minimal (3.11.8-1) ... Removing libexpat1:amd64 (2.6.0-1) ... Removing libpython3.11-stdlib:amd64 (3.11.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libncursesw6:amd64 (6.4+20240113-1) ... Removing libpython3.11-minimal:amd64 (3.11.8-1) ... find: '/usr/lib/python3': No such file or directory Removing libreadline8:amd64 (8.2-3) ... Removing libsqlite3-0:amd64 (3.45.1-1) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-3) ... Processing triggers for libc-bin (2.37-15) ... 6m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-get', 'remove', 'blt', 'ca-certificates', 'cython3', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-glyphicons-halflings', 'fonts-lyx', 'gcc-11-base:amd64', 'gcc-13-base:amd64', 'javascript-common', 'libaec0:amd64', 'libasan6:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcrypt-dev:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-10-dev:amd64', 'libgcc-13-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libhwasan0:amd64', 'libhwloc15:amd64', 'libice6:amd64', 'libicu67:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-popper.js', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmpdec3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnorm1:amd64', 'libnsl-dev:amd64', 'libopenblas-base:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libperl5.32:amd64', 'libpgm-5.3-0:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libproc2-0:amd64', 'libprocps8:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssw0:amd64', 'libstdc++-10-dev:amd64', 'libstdc++-13-dev:amd64', 'libsz2:amd64', 'libtbb-dev:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtiff6:amd64', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyajl2:amd64', 'libyaml-0-2:amd64', 'libzmq5:amd64', 'linux-libc-dev', 'littler', 'mailcap', 'media-types', 'mime-support', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'perl-modules-5.32', 'procps', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-asttokens', 'python3-attr', 'python3-backcall', 'python3-bcrypt', 'python3-bibtexparser', 'python3-biom-format', 'python3-blinker', 'python3-brotli', 'python3-cachecontrol', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-contourpy', 'python3-cryptography', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dill', 'python3-distutils', 'python3-executing', 'python3-flask', 'python3-flask-sqlalchemy', 'python3-flufl.lock', 'python3-fonttools', 'python3-fs', 'python3-future', 'python3-globus-sdk', 'python3-greenlet', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-ijson', 'python3-ipython', 'python3-ipython-genutils', 'python3-itsdangerous', 'python3-jedi', 'python3-jinja2', 'python3-joblib', 'python3-jwt', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-mpmath', 'python3-msgpack', 'python3-nacl', 'python3-natsort', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-paramiko', 'python3-parsl', 'python3-parso', 'python3-pexpect', 'python3-pickleshare', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-prompt-toolkit', 'python3-psutil', 'python3-ptyprocess', 'python3-public', 'python3-pure-eval', 'python3-py', 'python3-pygments', 'python3-pyparsing', 'python3-requests', 'python3-scipy', 'python3-setproctitle:amd64', 'python3-setuptools', 'python3-six', 'python3-skbio', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-sqlalchemy', 'python3-stack-data', 'python3-sympy', 'python3-tblib', 'python3-threadpoolctl', 'python3-tk:amd64', 'python3-tomlkit', 'python3-traitlets', 'python3-typeguard', 'python3-typeshed', 'python3-typing-extensions', 'python3-tz', 'python3-tzlocal', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wcwidth', 'python3-werkzeug', 'python3-yaml', 'python3-zmq', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'python3.9', 'python3.9-minimal', 'q2-types', 'qiime', 'r-base-core', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-dada2', 'r-bioc-delayedarray', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-shortread', 'r-bioc-sparsearray', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-assertthat', 'r-cran-bh', 'r-cran-bitops', 'r-cran-brio', 'r-cran-callr', 'r-cran-cli', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-deldir', 'r-cran-desc', 'r-cran-diffobj', 'r-cran-digest', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-formatr', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-getopt', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-hwriter', 'r-cran-interp', 'r-cran-isoband', 'r-cran-jpeg', 'r-cran-jsonlite', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-optparse', 'r-cran-pillar', 'r-cran-pkgbuild', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-pkgload', 'r-cran-plyr', 'r-cran-png', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-processx', 'r-cran-ps', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppeigen', 'r-cran-rcppparallel', 'r-cran-rcurl', 'r-cran-rematch2', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-scales', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-waldo', 'r-cran-withr', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'unicode-data', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64', 'q2-dada2'] 6m16.8s INFO: Running scripts post_remove 6m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_remove_exceptions'] 6m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_remove_exceptions'] 6m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'dpkg', '--purge', 'blt', 'ca-certificates', 'cython3', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-glyphicons-halflings', 'fonts-lyx', 'gcc-11-base:amd64', 'gcc-13-base:amd64', 'javascript-common', 'libaec0:amd64', 'libasan6:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcrypt-dev:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-10-dev:amd64', 'libgcc-13-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libhwasan0:amd64', 'libhwloc15:amd64', 'libice6:amd64', 'libicu67:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-popper.js', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmpdec3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnorm1:amd64', 'libnsl-dev:amd64', 'libopenblas-base:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libperl5.32:amd64', 'libpgm-5.3-0:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libproc2-0:amd64', 'libprocps8:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssw0:amd64', 'libstdc++-10-dev:amd64', 'libstdc++-13-dev:amd64', 'libsz2:amd64', 'libtbb-dev:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtiff6:amd64', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyajl2:amd64', 'libyaml-0-2:amd64', 'libzmq5:amd64', 'linux-libc-dev', 'littler', 'mailcap', 'media-types', 'mime-support', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'perl-modules-5.32', 'procps', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-asttokens', 'python3-attr', 'python3-backcall', 'python3-bcrypt', 'python3-bibtexparser', 'python3-biom-format', 'python3-blinker', 'python3-brotli', 'python3-cachecontrol', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-contourpy', 'python3-cryptography', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dill', 'python3-distutils', 'python3-executing', 'python3-flask', 'python3-flask-sqlalchemy', 'python3-flufl.lock', 'python3-fonttools', 'python3-fs', 'python3-future', 'python3-globus-sdk', 'python3-greenlet', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-ijson', 'python3-ipython', 'python3-ipython-genutils', 'python3-itsdangerous', 'python3-jedi', 'python3-jinja2', 'python3-joblib', 'python3-jwt', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-mpmath', 'python3-msgpack', 'python3-nacl', 'python3-natsort', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-paramiko', 'python3-parsl', 'python3-parso', 'python3-pexpect', 'python3-pickleshare', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-prompt-toolkit', 'python3-psutil', 'python3-ptyprocess', 'python3-public', 'python3-pure-eval', 'python3-py', 'python3-pygments', 'python3-pyparsing', 'python3-requests', 'python3-scipy', 'python3-setproctitle:amd64', 'python3-setuptools', 'python3-six', 'python3-skbio', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-sqlalchemy', 'python3-stack-data', 'python3-sympy', 'python3-tblib', 'python3-threadpoolctl', 'python3-tk:amd64', 'python3-tomlkit', 'python3-traitlets', 'python3-typeguard', 'python3-typeshed', 'python3-typing-extensions', 'python3-tz', 'python3-tzlocal', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wcwidth', 'python3-werkzeug', 'python3-yaml', 'python3-zmq', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'python3.9', 'python3.9-minimal', 'q2-types', 'qiime', 'r-base-core', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-dada2', 'r-bioc-delayedarray', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-shortread', 'r-bioc-sparsearray', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-assertthat', 'r-cran-bh', 'r-cran-bitops', 'r-cran-brio', 'r-cran-callr', 'r-cran-cli', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-deldir', 'r-cran-desc', 'r-cran-diffobj', 'r-cran-digest', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-formatr', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-getopt', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-hwriter', 'r-cran-interp', 'r-cran-isoband', 'r-cran-jpeg', 'r-cran-jsonlite', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-optparse', 'r-cran-pillar', 'r-cran-pkgbuild', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-pkgload', 'r-cran-plyr', 'r-cran-png', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-processx', 'r-cran-ps', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppeigen', 'r-cran-rcppparallel', 'r-cran-rcurl', 'r-cran-rematch2', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-scales', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-waldo', 'r-cran-withr', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'unicode-data', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64'] 6m17.7s DUMP: dpkg: warning: ignoring request to remove blt which isn't installed (Reading database ... 7530 files and directories currently installed.) Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove cython3 which isn't installed Purging configuration files for fontconfig (2.15.0-1) ... Purging configuration files for fontconfig-config (2.15.0-1) ... Purging configuration files for fonts-dejavu-core (2.37-8) ... Purging configuration files for fonts-dejavu-mono (2.37-8) ... dpkg: warning: while removing fonts-dejavu-mono, directory '/usr/share/fonts/truetype/dejavu' not empty so not removed dpkg: warning: ignoring request to remove fonts-glyphicons-halflings which isn't installed dpkg: warning: ignoring request to remove fonts-lyx which isn't installed dpkg: warning: ignoring request to remove gcc-11-base which isn't installed dpkg: warning: ignoring request to remove gcc-13-base which isn't installed Purging configuration files for javascript-common (11+nmu1) ... dpkg: warning: ignoring request to remove libaec0 which isn't installed dpkg: warning: ignoring request to remove libasan6 which isn't installed dpkg: warning: ignoring request to remove libasan8 which isn't installed dpkg: warning: ignoring request to remove libatomic1 which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libboost-dev which isn't installed dpkg: warning: ignoring request to remove libboost1.83-dev which isn't installed dpkg: warning: ignoring request to remove libbrotli1 which isn't installed dpkg: warning: ignoring request to remove libbsd0 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove libcairo2 which isn't installed Purging configuration files for libcrypt-dev:amd64 (1:4.4.36-4) ... dpkg: warning: ignoring request to remove libcurl4 which isn't installed dpkg: warning: ignoring request to remove libdatrie1 which isn't installed dpkg: warning: ignoring request to remove libdeflate0 which isn't installed dpkg: warning: ignoring request to remove libexpat1 which isn't installed dpkg: warning: ignoring request to remove libfontconfig1 which isn't installed dpkg: warning: ignoring request to remove libfreetype6 which isn't installed dpkg: warning: ignoring request to remove libfribidi0 which isn't installed dpkg: warning: ignoring request to remove libgcc-10-dev which isn't installed dpkg: warning: ignoring request to remove libgcc-13-dev which isn't installed dpkg: warning: ignoring request to remove libgfortran5 which isn't installed Purging configuration files for libglib2.0-0:amd64 (2.78.4-1) ... dpkg: warning: ignoring request to remove libgomp1 which isn't installed dpkg: warning: ignoring request to remove libgraphite2-3 which isn't installed dpkg: warning: ignoring request to remove libharfbuzz0b which isn't installed dpkg: warning: ignoring request to remove libhdf5-103-1 which isn't installed dpkg: warning: ignoring request to remove libhdf5-hl-100 which isn't installed dpkg: warning: ignoring request to remove libhwasan0 which isn't installed dpkg: warning: ignoring request to remove libhwloc15 which isn't installed dpkg: warning: ignoring request to remove libice6 which isn't installed dpkg: warning: ignoring request to remove libicu67 which isn't installed dpkg: warning: ignoring request to remove libicu72 which isn't installed dpkg: warning: ignoring request to remove libimagequant0 which isn't installed dpkg: warning: ignoring request to remove libitm1 which isn't installed dpkg: warning: ignoring request to remove libjbig0 which isn't installed dpkg: warning: ignoring request to remove libjpeg62-turbo which isn't installed dpkg: warning: ignoring request to remove libjs-bootstrap which isn't installed Purging configuration files for libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... dpkg: warning: ignoring request to remove libjs-jquery-ui which isn't installed Purging configuration files for libjs-popper.js (1.16.1+ds-6) ... dpkg: warning: ignoring request to remove liblapack3 which isn't installed dpkg: warning: ignoring request to remove liblbfgsb0 which isn't installed dpkg: warning: ignoring request to remove liblcms2-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.4-2 which isn't installed dpkg: warning: ignoring request to remove libldap-2.5-0 which isn't installed dpkg: warning: ignoring request to remove liblerc4 which isn't installed dpkg: warning: ignoring request to remove liblsan0 which isn't installed dpkg: warning: ignoring request to remove liblzf1 which isn't installed dpkg: warning: ignoring request to remove libmpdec3 which isn't installed dpkg: warning: ignoring request to remove libncurses6 which isn't installed dpkg: warning: ignoring request to remove libncursesw6 which isn't installed dpkg: warning: ignoring request to remove libnghttp2-14 which isn't installed dpkg: warning: ignoring request to remove libnorm1 which isn't installed dpkg: warning: ignoring request to remove libnsl-dev which isn't installed dpkg: warning: ignoring request to remove libopenblas-base which isn't installed dpkg: warning: ignoring request to remove libopenblas0 which isn't installed dpkg: warning: ignoring request to remove libopenblas0-pthread which isn't installed dpkg: warning: ignoring request to remove libopenjp2-7 which isn't installed dpkg: warning: ignoring request to remove libpango-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangocairo-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpangoft2-1.0-0 which isn't installed dpkg: warning: ignoring request to remove libpaper-utils which isn't installed Purging configuration files for libpaper1:amd64 (1.1.29) ... dpkg: warning: ignoring request to remove libperl5.32 which isn't installed dpkg: warning: ignoring request to remove libpgm-5.3-0 which isn't installed dpkg: warning: ignoring request to remove libpixman-1-0 which isn't installed dpkg: warning: ignoring request to remove libpng16-16 which isn't installed dpkg: warning: ignoring request to remove libproc2-0 which isn't installed dpkg: warning: ignoring request to remove libprocps8 which isn't installed dpkg: warning: ignoring request to remove libpsl5 which isn't installed dpkg: warning: ignoring request to remove libpython3-stdlib which isn't installed Purging configuration files for libpython3.11-minimal:amd64 (3.11.8-1) ... dpkg: warning: ignoring request to remove libpython3.11-stdlib which isn't installed Purging configuration files for libpython3.12-minimal:amd64 (3.12.2-1) ... dpkg: warning: ignoring request to remove libpython3.12-stdlib which isn't installed Purging configuration files for libpython3.9-minimal:amd64 (3.9.2-1) ... dpkg: warning: ignoring request to remove libpython3.9-stdlib which isn't installed dpkg: warning: ignoring request to remove libqhull-r8.0 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed dpkg: warning: ignoring request to remove libreadline8 which isn't installed dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsodium23 which isn't installed dpkg: warning: ignoring request to remove libsqlite3-0 which isn't installed dpkg: warning: ignoring request to remove libssh2-1 which isn't installed dpkg: warning: ignoring request to remove libssw0 which isn't installed dpkg: warning: ignoring request to remove libstdc++-10-dev which isn't installed dpkg: warning: ignoring request to remove libstdc++-13-dev which isn't installed dpkg: warning: ignoring request to remove libsz2 which isn't installed dpkg: warning: ignoring request to remove libtbb-dev which isn't installed dpkg: warning: ignoring request to remove libtbb12 which isn't installed dpkg: warning: ignoring request to remove libtbbbind-2-5 which isn't installed dpkg: warning: ignoring request to remove libtbbmalloc2 which isn't installed dpkg: warning: ignoring request to remove libtcl8.6 which isn't installed dpkg: warning: ignoring request to remove libthai-data which isn't installed dpkg: warning: ignoring request to remove libthai0 which isn't installed dpkg: warning: ignoring request to remove libtiff5 which isn't installed dpkg: warning: ignoring request to remove libtiff6 which isn't installed dpkg: warning: ignoring request to remove libtirpc-dev which isn't installed dpkg: warning: ignoring request to remove libtk8.6 which isn't installed dpkg: warning: ignoring request to remove libtsan0 which isn't installed dpkg: warning: ignoring request to remove libtsan2 which isn't installed dpkg: warning: ignoring request to remove libubsan1 which isn't installed dpkg: warning: ignoring request to remove libuv1 which isn't installed dpkg: warning: ignoring request to remove libwebp6 which isn't installed dpkg: warning: 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libxrender1 which isn't installed dpkg: warning: ignoring request to remove libxslt1.1 which isn't installed dpkg: warning: ignoring request to remove libxss1 which isn't installed dpkg: warning: ignoring request to remove libxt6 which isn't installed dpkg: warning: ignoring request to remove libyajl2 which isn't installed dpkg: warning: ignoring request to remove libyaml-0-2 which isn't installed dpkg: warning: ignoring request to remove libzmq5 which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed dpkg: warning: ignoring request to remove littler which isn't installed Purging configuration files for mailcap (3.70+nmu1) ... Purging configuration files for media-types (10.1.0) ... dpkg: warning: ignoring request to remove mime-support which isn't installed Purging configuration files for netbase (6.4) ... dpkg: warning: ignoring request to remove node-fortawesome-fontawesome-free which isn't installed Purging configuration files for openssl (3.1.5-1) ... dpkg: warning: ignoring request to remove perl-modules-5.32 which isn't installed Purging configuration files for procps (2:4.0.4-4) ... Purging configuration files for python-matplotlib-data (3.6.3-1) ... 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installed dpkg: warning: ignoring request to remove python3-pandas-lib which isn't installed dpkg: warning: ignoring request to remove python3-paramiko which isn't installed dpkg: warning: ignoring request to remove python3-parsl which isn't installed dpkg: warning: ignoring request to remove python3-parso which isn't installed dpkg: warning: ignoring request to remove python3-pexpect which isn't installed dpkg: warning: ignoring request to remove python3-pickleshare which isn't installed dpkg: warning: ignoring request to remove python3-pil which isn't installed dpkg: warning: ignoring request to remove python3-pil.imagetk which isn't installed dpkg: warning: ignoring request to remove python3-pkg-resources which isn't installed dpkg: warning: ignoring request to remove python3-prompt-toolkit which isn't installed dpkg: warning: ignoring request to remove python3-psutil which isn't installed dpkg: warning: ignoring request to remove python3-ptyprocess which isn't installed dpkg: warning: ignoring request to remove python3-public which isn't installed dpkg: warning: ignoring request to remove python3-pure-eval which isn't installed dpkg: warning: ignoring request to remove python3-py which isn't installed dpkg: warning: ignoring request to remove python3-pygments which isn't installed dpkg: warning: ignoring request to remove python3-pyparsing which isn't installed dpkg: warning: ignoring request to remove python3-requests which isn't installed dpkg: warning: ignoring request to remove python3-scipy which isn't installed dpkg: warning: ignoring request to remove python3-setproctitle which isn't installed dpkg: warning: ignoring request to remove python3-setuptools which isn't installed dpkg: warning: ignoring request to remove python3-six which isn't installed dpkg: warning: ignoring request to remove python3-skbio which isn't installed dpkg: warning: ignoring request to remove python3-sklearn which isn't installed dpkg: warning: ignoring request to remove python3-sklearn-lib which isn't installed dpkg: warning: ignoring request to remove python3-sqlalchemy which isn't installed dpkg: warning: ignoring request to remove python3-stack-data which isn't installed Purging configuration files for python3-sympy (1.12-7) ... dpkg: warning: ignoring request to remove python3-tblib which isn't installed dpkg: warning: ignoring request to remove python3-threadpoolctl which isn't installed dpkg: warning: ignoring request to remove python3-tk which isn't installed dpkg: warning: ignoring request to remove python3-tomlkit which isn't installed dpkg: warning: ignoring request to remove python3-traitlets which isn't installed dpkg: warning: ignoring request to remove python3-typeguard which isn't installed dpkg: warning: ignoring request to remove python3-typeshed which isn't installed dpkg: warning: ignoring request to remove python3-typing-extensions which isn't installed dpkg: warning: ignoring request to remove python3-tz which isn't installed dpkg: warning: ignoring request to remove python3-tzlocal which isn't installed dpkg: warning: ignoring request to remove python3-ufolib2 which isn't installed dpkg: warning: ignoring request to remove python3-unicodedata2 which isn't installed dpkg: warning: ignoring request to remove python3-urllib3 which isn't installed dpkg: warning: ignoring request to remove python3-wcwidth which isn't installed dpkg: warning: ignoring request to remove python3-werkzeug which isn't installed dpkg: warning: ignoring request to remove python3-yaml which isn't installed dpkg: warning: ignoring request to remove python3-zmq which isn't installed dpkg: warning: ignoring request to remove python3.11 which isn't installed Purging configuration files for python3.11-minimal (3.11.8-1) ... dpkg: warning: ignoring request to remove python3.12 which isn't installed Purging configuration files for python3.12-minimal (3.12.2-1) ... dpkg: warning: ignoring request to remove python3.9 which isn't installed Purging configuration files for python3.9-minimal (3.9.2-1) ... dpkg: warning: ignoring request to remove q2-types which isn't installed dpkg: warning: ignoring request to remove qiime which isn't installed Purging configuration files for r-base-core (4.3.2-1) ... dpkg: warning: ignoring request to remove r-bioc-biobase which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-biocparallel which isn't installed dpkg: warning: ignoring request to remove r-bioc-biostrings which isn't installed dpkg: warning: ignoring request to remove r-bioc-dada2 which isn't installed dpkg: warning: ignoring request to remove r-bioc-delayedarray which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomeinfodb which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomeinfodbdata which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicalignments which isn't installed dpkg: warning: ignoring request to remove r-bioc-genomicranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-iranges which isn't installed dpkg: warning: ignoring request to remove r-bioc-matrixgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-rhtslib which isn't installed dpkg: warning: ignoring request to remove r-bioc-rsamtools which isn't installed dpkg: warning: ignoring request to remove r-bioc-s4arrays which isn't installed dpkg: warning: ignoring request to remove r-bioc-s4vectors which isn't installed dpkg: warning: ignoring request to remove r-bioc-shortread which isn't installed dpkg: warning: ignoring request to remove r-bioc-sparsearray which isn't installed dpkg: warning: ignoring request to remove r-bioc-summarizedexperiment which isn't installed dpkg: warning: ignoring request to remove r-bioc-xvector which isn't installed dpkg: warning: ignoring request to remove r-bioc-zlibbioc which isn't installed dpkg: warning: ignoring request to remove r-cran-abind which isn't installed dpkg: warning: ignoring request to remove r-cran-assertthat which isn't installed dpkg: warning: ignoring request to remove r-cran-bh which isn't installed dpkg: warning: ignoring request to remove r-cran-bitops which isn't installed dpkg: warning: ignoring request to remove r-cran-brio which isn't installed dpkg: warning: ignoring request to remove r-cran-callr which isn't installed dpkg: warning: ignoring request to remove r-cran-cli which isn't installed dpkg: warning: ignoring request to remove r-cran-codetools which isn't installed dpkg: warning: ignoring request to remove r-cran-colorspace which isn't installed dpkg: warning: ignoring request to remove r-cran-cpp11 which isn't installed dpkg: warning: ignoring request to remove r-cran-crayon which isn't installed dpkg: warning: ignoring request to remove r-cran-deldir which isn't installed dpkg: warning: ignoring request to remove r-cran-desc which isn't installed dpkg: warning: ignoring request to remove r-cran-diffobj which isn't installed dpkg: warning: ignoring request to remove r-cran-digest which isn't installed dpkg: warning: ignoring request to remove r-cran-ellipsis which isn't installed dpkg: warning: ignoring request to remove r-cran-evaluate which isn't installed dpkg: warning: ignoring request to remove r-cran-fansi which isn't installed dpkg: warning: ignoring request to remove r-cran-farver which isn't installed dpkg: warning: ignoring request to remove r-cran-formatr which isn't installed dpkg: warning: ignoring request to remove r-cran-fs which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.logger which isn't installed dpkg: warning: ignoring request to remove r-cran-futile.options which isn't installed dpkg: warning: ignoring request to remove r-cran-getopt which isn't installed dpkg: warning: ignoring request to remove r-cran-ggplot2 which isn't installed dpkg: warning: ignoring request to remove r-cran-glue which isn't installed dpkg: warning: ignoring request to remove r-cran-gtable which isn't installed dpkg: warning: ignoring request to remove r-cran-hwriter which isn't installed dpkg: warning: ignoring request to remove r-cran-interp which isn't installed dpkg: warning: ignoring request to remove r-cran-isoband which isn't installed dpkg: warning: ignoring request to remove r-cran-jpeg which isn't installed dpkg: warning: ignoring request to remove r-cran-jsonlite which isn't installed dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed dpkg: warning: ignoring request to remove r-cran-lambda.r which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-latticeextra which isn't installed dpkg: warning: ignoring request to remove r-cran-lifecycle which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-matrixstats which isn't installed dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed dpkg: warning: ignoring request to remove r-cran-optparse which isn't installed dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgbuild which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgload which isn't installed dpkg: warning: ignoring request to remove r-cran-plyr which isn't installed dpkg: warning: ignoring request to remove r-cran-png which isn't installed dpkg: warning: ignoring request to remove r-cran-praise which isn't installed dpkg: warning: ignoring request to remove r-cran-prettyunits which isn't installed dpkg: warning: ignoring request to remove r-cran-processx which isn't installed dpkg: warning: ignoring request to remove r-cran-ps which isn't installed dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-rcppeigen which isn't installed dpkg: warning: ignoring request to remove r-cran-rcppparallel which isn't installed dpkg: warning: ignoring request to remove r-cran-rcurl which isn't installed dpkg: warning: ignoring request to remove r-cran-rematch2 which isn't installed dpkg: warning: ignoring request to remove r-cran-reshape2 which isn't installed dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed dpkg: warning: ignoring request to remove r-cran-rprojroot which isn't installed dpkg: warning: ignoring request to remove r-cran-rstudioapi which isn't installed dpkg: warning: ignoring request to remove r-cran-scales which isn't installed dpkg: warning: ignoring request to remove r-cran-snow which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-testthat which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed dpkg: warning: ignoring request to remove r-cran-vctrs which isn't installed dpkg: warning: ignoring request to remove r-cran-viridislite which isn't installed dpkg: warning: ignoring request to remove r-cran-waldo which isn't installed dpkg: warning: ignoring request to remove r-cran-withr which isn't installed Purging configuration files for readline-common (8.2-3) ... dpkg: warning: ignoring request to remove rpcsvc-proto which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed dpkg: warning: ignoring request to remove ttf-bitstream-vera which isn't installed Purging configuration files for ucf (3.0043+nmu1) ... dpkg: warning: ignoring request to remove unicode-data which isn't installed Purging configuration files for unzip (6.0-28) ... Purging configuration files for x11-common (1:7.7+23) ... dpkg: warning: while removing x11-common, directory '/etc/init.d' not empty so not removed dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed 6m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'dpkg', '--purge', 'blt', 'ca-certificates', 'cython3', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-glyphicons-halflings', 'fonts-lyx', 'gcc-11-base:amd64', 'gcc-13-base:amd64', 'javascript-common', 'libaec0:amd64', 'libasan6:amd64', 'libasan8:amd64', 'libatomic1:amd64', 'libblas3:amd64', 'libboost-dev:amd64', 'libboost1.83-dev:amd64', 'libbrotli1:amd64', 'libbsd0:amd64', 'libc-dev-bin', 'libc6-dev:amd64', 'libcairo2:amd64', 'libcrypt-dev:amd64', 'libcurl4:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgcc-10-dev:amd64', 'libgcc-13-dev:amd64', 'libgfortran5:amd64', 'libglib2.0-0:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1:amd64', 'libhdf5-hl-100:amd64', 'libhwasan0:amd64', 'libhwloc15:amd64', 'libice6:amd64', 'libicu67:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libitm1:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-popper.js', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblsan0:amd64', 'liblzf1:amd64', 'libmpdec3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnorm1:amd64', 'libnsl-dev:amd64', 'libopenblas-base:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libperl5.32:amd64', 'libpgm-5.3-0:amd64', 'libpixman-1-0:amd64', 'libpng16-16:amd64', 'libproc2-0:amd64', 'libprocps8:amd64', 'libpsl5:amd64', 'libpython3-stdlib:amd64', 'libpython3.11-minimal:amd64', 'libpython3.11-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1:amd64', 'libssw0:amd64', 'libstdc++-10-dev:amd64', 'libstdc++-13-dev:amd64', 'libsz2:amd64', 'libtbb-dev:amd64', 'libtbb12:amd64', 'libtbbbind-2-5:amd64', 'libtbbmalloc2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtiff6:amd64', 'libtirpc-dev:amd64', 'libtk8.6:amd64', 'libtsan0:amd64', 'libtsan2:amd64', 'libubsan1:amd64', 'libuv1:amd64', 'libwebp6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6:amd64', 'libyajl2:amd64', 'libyaml-0-2:amd64', 'libzmq5:amd64', 'linux-libc-dev', 'littler', 'mailcap', 'media-types', 'mime-support', 'netbase', 'node-fortawesome-fontawesome-free', 'openssl', 'perl-modules-5.32', 'procps', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-asttokens', 'python3-attr', 'python3-backcall', 'python3-bcrypt', 'python3-bibtexparser', 'python3-biom-format', 'python3-blinker', 'python3-brotli', 'python3-cachecontrol', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-contourpy', 'python3-cryptography', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dill', 'python3-distutils', 'python3-executing', 'python3-flask', 'python3-flask-sqlalchemy', 'python3-flufl.lock', 'python3-fonttools', 'python3-fs', 'python3-future', 'python3-globus-sdk', 'python3-greenlet', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-ijson', 'python3-ipython', 'python3-ipython-genutils', 'python3-itsdangerous', 'python3-jedi', 'python3-jinja2', 'python3-joblib', 'python3-jwt', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-mpmath', 'python3-msgpack', 'python3-nacl', 'python3-natsort', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-paramiko', 'python3-parsl', 'python3-parso', 'python3-pexpect', 'python3-pickleshare', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-prompt-toolkit', 'python3-psutil', 'python3-ptyprocess', 'python3-public', 'python3-pure-eval', 'python3-py', 'python3-pygments', 'python3-pyparsing', 'python3-requests', 'python3-scipy', 'python3-setproctitle:amd64', 'python3-setuptools', 'python3-six', 'python3-skbio', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-sqlalchemy', 'python3-stack-data', 'python3-sympy', 'python3-tblib', 'python3-threadpoolctl', 'python3-tk:amd64', 'python3-tomlkit', 'python3-traitlets', 'python3-typeguard', 'python3-typeshed', 'python3-typing-extensions', 'python3-tz', 'python3-tzlocal', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wcwidth', 'python3-werkzeug', 'python3-yaml', 'python3-zmq', 'python3.11', 'python3.11-minimal', 'python3.12', 'python3.12-minimal', 'python3.9', 'python3.9-minimal', 'q2-types', 'qiime', 'r-base-core', 'r-bioc-biobase', 'r-bioc-biocgenerics', 'r-bioc-biocparallel', 'r-bioc-biostrings', 'r-bioc-dada2', 'r-bioc-delayedarray', 'r-bioc-genomeinfodb', 'r-bioc-genomeinfodbdata', 'r-bioc-genomicalignments', 'r-bioc-genomicranges', 'r-bioc-iranges', 'r-bioc-matrixgenerics', 'r-bioc-rhtslib', 'r-bioc-rsamtools', 'r-bioc-s4arrays', 'r-bioc-s4vectors', 'r-bioc-shortread', 'r-bioc-sparsearray', 'r-bioc-summarizedexperiment', 'r-bioc-xvector', 'r-bioc-zlibbioc', 'r-cran-abind', 'r-cran-assertthat', 'r-cran-bh', 'r-cran-bitops', 'r-cran-brio', 'r-cran-callr', 'r-cran-cli', 'r-cran-codetools', 'r-cran-colorspace', 'r-cran-cpp11', 'r-cran-crayon', 'r-cran-deldir', 'r-cran-desc', 'r-cran-diffobj', 'r-cran-digest', 'r-cran-ellipsis', 'r-cran-evaluate', 'r-cran-fansi', 'r-cran-farver', 'r-cran-formatr', 'r-cran-fs', 'r-cran-futile.logger', 'r-cran-futile.options', 'r-cran-getopt', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-hwriter', 'r-cran-interp', 'r-cran-isoband', 'r-cran-jpeg', 'r-cran-jsonlite', 'r-cran-labeling', 'r-cran-lambda.r', 'r-cran-lattice', 'r-cran-latticeextra', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-matrixstats', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-optparse', 'r-cran-pillar', 'r-cran-pkgbuild', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-pkgload', 'r-cran-plyr', 'r-cran-png', 'r-cran-praise', 'r-cran-prettyunits', 'r-cran-processx', 'r-cran-ps', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-rcppeigen', 'r-cran-rcppparallel', 'r-cran-rcurl', 'r-cran-rematch2', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-rprojroot', 'r-cran-rstudioapi', 'r-cran-scales', 'r-cran-snow', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-testthat', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-waldo', 'r-cran-withr', 'readline-common', 'rpcsvc-proto', 'sensible-utils', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'unicode-data', 'unzip', 'x11-common', 'xdg-utils', 'zip', 'zlib1g-dev:amd64'] 6m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'dpkg', '--purge', 'q2-dada2'] 6m17.7s DUMP: dpkg: warning: ignoring request to remove q2-dada2 which isn't installed 6m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'dpkg', '--purge', 'q2-dada2'] 6m17.7s INFO: Running scripts post_purge 6m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_purge_exceptions'] 6m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_purge_exceptions'] 6m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'dpkg', '--purge', '--pending'] 6m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'dpkg', '--purge', '--pending'] 6m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'dpkg', '--remove', '--pending'] 6m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'dpkg', '--remove', '--pending'] 6m17.7s INFO: Running scripts post_test 6m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_test_exceptions'] 6m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'tmp/scripts/post_test_exceptions'] 6m17.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp477gc8r'] 6m18.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpp477gc8r'] 6m18.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'dpkg-divert', '--list'] 6m18.1s DUMP: local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib 6m18.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'dpkg-divert', '--list'] 6m18.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-get', 'clean'] 6m18.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpp477gc8r', 'apt-get', 'clean'] 6m18.3s DEBUG: Recording chroot state 6m18.8s INFO: Warning: Package purging left files on system: /usr/local/share/fonts/ not owned /usr/local/share/fonts/.uuid not owned /usr/share/fonts/ owned by: ttf-bitstream-vera, fonts-lyx, fonts-glyphicons-halflings, fonts-dejavu-mono, fonts-dejavu-core /usr/share/fonts/.uuid not owned /usr/share/fonts/truetype/ owned by: ttf-bitstream-vera, fonts-lyx, fonts-glyphicons-halflings, fonts-dejavu-mono, fonts-dejavu-core /usr/share/fonts/truetype/.uuid not owned /usr/share/fonts/truetype/dejavu/ owned by: fonts-dejavu-mono, fonts-dejavu-core /usr/share/fonts/truetype/dejavu/.uuid not owned /usr/share/fonts/truetype/lyx/ owned by: fonts-lyx /usr/share/fonts/truetype/lyx/.uuid not owned /usr/share/fonts/truetype/ttf-bitstream-vera/ owned by: ttf-bitstream-vera /usr/share/fonts/truetype/ttf-bitstream-vera/.uuid not owned 6m19.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpp477gc8r/dev/shm'] 6m19.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpp477gc8r/dev/shm'] 6m19.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpp477gc8r/dev/console'] 6m19.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpp477gc8r/dev/console'] 6m19.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpp477gc8r/dev/ptmx'] 6m19.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpp477gc8r/dev/ptmx'] 6m19.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpp477gc8r/dev/pts'] 6m19.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpp477gc8r/dev/pts'] 6m19.2s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpp477gc8r/proc'] 6m19.3s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpp477gc8r/proc'] 6m19.3s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpp477gc8r'] 6m19.4s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpp477gc8r'] 6m19.4s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpp477gc8r 6m19.5s INFO: PASS: Upgrading between Debian distributions. 6m19.5s INFO: PASS: All tests. 6m19.5s INFO: piuparts run ends. ret=0 End: 2024-02-18 23:31:06 GMT