Start: 2024-06-26 16:12:33 GMT [stable] Package: q2-quality-control Version: 2020.11.1-3 Installed-Size: 457 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, python3-biom-format, python3-h5py, python3-seaborn, python3-numpy, python3-pandas, python3-scipy, qiime, q2templates, q2-taxa, bowtie2, ncbi-blast+, samtools, vsearch Description: QIIME 2 plugin for quality assurance of feature and sequence data Homepage: https://qiime2.org/ Description-md5: c482bb89f1c63b4de2169ec655268f05 Section: science Priority: optional Filename: pool/main/q/q2-quality-control/q2-quality-control_2020.11.1-3_all.deb Size: 247752 MD5sum: 1733c7f9997190869e32f728b11d83e8 SHA256: e714ab58585e961358882a232c803fbb564cdb2c35a7f779dc7ca683ac00d87e [sid] Package: q2-quality-control Version: 2024.5.0-1 Installed-Size: 3746 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, python3-biom-format, python3-h5py, python3-seaborn, python3-numpy, python3-pandas, python3-scipy (>= 1.10~), qiime (>= 2024.5), q2templates (>= 2024.5), q2-taxa (>= 2024.5), r-base-core, r-bioc-decontam, r-cran-optparse, bowtie2, ncbi-blast+, samtools, vsearch Description: QIIME 2 plugin for quality assurance of feature and sequence data Homepage: https://qiime2.org/ Description-md5: c482bb89f1c63b4de2169ec655268f05 Section: science Priority: optional Filename: pool/main/q/q2-quality-control/q2-quality-control_2024.5.0-1_all.deb Size: 728608 MD5sum: 8547f6a9890fa684a9e2e7bdd661917d SHA256: a0cf9addd2808b4e8813fc9ca60e6839c2d56e4640fc2fdb44e22fd05ea475ab Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python3/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d stable -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat --apt q2-quality-control=2024.5.0-1 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 1.4.2 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --mirror 'http://deb.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz -d stable -d sid -B /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat --apt q2-quality-control=2024.5.0-1 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 5.10.0-30-amd64 #1 SMP Debian 5.10.218-1 (2024-06-01) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp8p4ck1ti 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp8p4ck1ti 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', '--auto-compress', '-xf', '/srv/piuparts.debian.org/slave/basetgz/bullseye-merged-usr_amd64.tar.gz'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti/proc'] 0m0.4s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti/proc'] 0m0.4s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti/dev/pts'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti/dev/pts'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti/dev/ptmx'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti/dev/ptmx'] 0m0.5s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti/dev/console'] 0m0.5s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/1', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti/dev/console'] 0m0.5s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti/dev/shm'] 0m0.5s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti/dev/shm'] 0m0.5s DEBUG: sources.list: deb http://deb.debian.org/debian/ bullseye main 0m0.5s DEBUG: Created policy-rc.d and chmodded it. 0m0.5s DEBUG: Created resolv.conf. 0m0.5s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp8p4ck1ti/tmp/scripts/ 0m0.5s INFO: Running scripts post_chroot_unpack 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_chroot_unpack_allow_unauthenticated'] 0m0.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-get', 'update'] 0m1.7s DUMP: Hit:1 http://deb.debian.org/debian bullseye InRelease Reading package lists... 0m1.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-get', 'update'] 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-get', '-yf', 'dist-upgrade'] 0m2.1s DUMP: Reading package lists... Building dependency tree... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m2.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-get', '-yf', 'dist-upgrade'] 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.3s DUMP: 29fcf27583012b383113cec2bf757015 - 0m2.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m2.3s INFO: Running scripts post_setup 0m2.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_setup_dummy_users'] 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_setup_dummy_users'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_setup_forbid_home'] 0m3.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_setup_forbid_home'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.7s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /usr/bin/sync to /usr/bin/sync.distrib' Adding 'local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged' '/bin/sync' -> 'true' 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_setup_minimize'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_setup_minimize'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_setup_squeeze-backports'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_setup_zz_backports'] 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_setup_zz_backports'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.7s DUMP: install ok installed adduser adduser 3.118+deb11u1 install ok installed apt apt 2.2.4 install ok installed base-files base-files 11.1+deb11u9 install ok installed base-passwd base-passwd 3.5.51 install ok installed bash bash 5.1-2+deb11u1 install ok installed bsdutils bsdutils 1:2.36.1-8+deb11u1 install ok installed coreutils coreutils 8.32-4+b1 install ok installed dash dash 0.5.11+git20200708+dd9ef66-5 install ok installed debconf debconf 1.5.77 install ok installed debian-archive-keyring debian-archive-keyring 2021.1.1+deb11u1 install ok installed debianutils debianutils 4.11.2 install ok installed diffutils diffutils 1:3.7-5 install ok installed dpkg dpkg 1.20.13 install ok installed e2fsprogs e2fsprogs 1.46.2-2 install ok installed findutils findutils 4.8.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.2.1-6 install ok installed gcc-9-base:amd64 gcc-9-base 9.3.0-22 install ok installed gpgv gpgv 2.2.27-2+deb11u2 install ok installed grep grep 3.6-1+deb11u1 install ok installed gzip gzip 1.10-4+deb11u1 install ok installed hostname hostname 3.23 install ok installed init-system-helpers init-system-helpers 1.60 install ok installed libacl1:amd64 libacl1 2.2.53-10 install ok installed libapt-pkg6.0:amd64 libapt-pkg6.0 2.2.4 install ok installed libattr1:amd64 libattr1 1:2.4.48-6 install ok installed libaudit-common libaudit-common 1:3.0-2 install ok installed libaudit1:amd64 libaudit1 1:3.0-2 install ok installed libblkid1:amd64 libblkid1 2.36.1-8+deb11u1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-4 install ok installed libc-bin libc-bin 2.31-13+deb11u8 install ok installed libc6:amd64 libc6 2.31-13+deb11u8 install ok installed libcap-ng0:amd64 libcap-ng0 0.7.9-2.2+b1 install ok installed libcom-err2:amd64 libcom-err2 1.46.2-2 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.18-4 install ok installed libdb5.3:amd64 libdb5.3 5.3.28+dfsg1-0.8 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.260 install ok installed libext2fs2:amd64 libext2fs2 1.46.2-2 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libgcc-s1:amd64 libgcc-s1 10.2.1-6 install ok installed libgcrypt20:amd64 libgcrypt20 1.8.7-6 install ok installed libgmp10:amd64 libgmp10 2:6.2.1+dfsg-1+deb11u1 install ok installed libgnutls30:amd64 libgnutls30 3.7.1-5+deb11u4 install ok installed libgpg-error0:amd64 libgpg-error0 1.38-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.18.3-6+deb11u4 install ok installed libhogweed6:amd64 libhogweed6 3.7.3-1 install ok installed libidn2-0:amd64 libidn2-0 2.3.0-5 install ok installed libk5crypto3:amd64 libk5crypto3 1.18.3-6+deb11u4 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.1-2 install ok installed libkrb5-3:amd64 libkrb5-3 1.18.3-6+deb11u4 install ok installed libkrb5support0:amd64 libkrb5support0 1.18.3-6+deb11u4 install ok installed liblz4-1:amd64 liblz4-1 1.9.3-2 install ok installed liblzma5:amd64 liblzma5 5.2.5-2.1~deb11u1 install ok installed libmount1:amd64 libmount1 2.36.1-8+deb11u1 install ok installed libnettle8:amd64 libnettle8 3.7.3-1 install ok installed libnsl2:amd64 libnsl2 1.3.0-2 install ok installed libp11-kit0:amd64 libp11-kit0 0.23.22-1 install ok installed libpam-modules:amd64 libpam-modules 1.4.0-9+deb11u1 install ok installed libpam-modules-bin libpam-modules-bin 1.4.0-9+deb11u1 install ok installed libpam-runtime libpam-runtime 1.4.0-9+deb11u1 install ok installed libpam0g:amd64 libpam0g 1.4.0-9+deb11u1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.36-2+deb11u1 install ok installed libpcre3:amd64 libpcre3 2:8.39-13 install ok installed libseccomp2:amd64 libseccomp2 2.5.1-1+deb11u1 install ok installed libselinux1:amd64 libselinux1 3.1-3 install ok installed libsemanage-common libsemanage-common 3.1-1 install ok installed libsemanage1:amd64 libsemanage1 3.1-1+b2 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsmartcols1:amd64 libsmartcols1 2.36.1-8+deb11u1 install ok installed libss2:amd64 libss2 1.46.2-2 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libstdc++6:amd64 libstdc++6 10.2.1-6 install ok installed libsystemd0:amd64 libsystemd0 247.3-7+deb11u4 install ok installed libtasn1-6:amd64 libtasn1-6 4.16.0-2+deb11u1 install ok installed libtinfo6:amd64 libtinfo6 6.2+20201114-2+deb11u2 install ok installed libtirpc-common libtirpc-common 1.3.1-1+deb11u1 install ok installed libtirpc3:amd64 libtirpc3 1.3.1-1+deb11u1 install ok installed libudev1:amd64 libudev1 247.3-7+deb11u4 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libuuid1:amd64 libuuid1 2.36.1-8+deb11u1 install ok installed libxxhash0:amd64 libxxhash0 0.8.0-2 install ok installed libzstd1:amd64 libzstd1 1.4.8+dfsg-2.1 install ok installed login login 1:4.8.1-1 install ok installed logsave logsave 1.46.2-2 install ok installed lsb-base lsb-base 11.1.0 install ok installed mawk mawk 1.3.4.20200120-2 install ok installed mount mount 2.36.1-8+deb11u1 install ok installed ncurses-base ncurses-base 6.2+20201114-2+deb11u2 install ok installed ncurses-bin ncurses-bin 6.2+20201114-2+deb11u2 install ok installed passwd passwd 1:4.8.1-1 install ok installed perl-base perl-base 5.32.1-4+deb11u3 install ok installed sed sed 4.7-1 install ok installed sysvinit-utils sysvinit-utils 2.96-7+deb11u1 install ok installed tar tar 1.34+dfsg-1+deb11u1 install ok installed tzdata tzdata 2024a-0+deb11u1 install ok installed util-linux util-linux 2.36.1-8+deb11u1 install ok installed zlib1g:amd64 zlib1g 1:1.2.11.dfsg-2+deb11u2 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m3.7s DEBUG: Loading chroot meta data from /srv/piuparts.debian.org/slave/refchroot/stable2sid/reference-chroot-metadata.dat 0m3.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti'] 0m4.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti'] 0m4.1s INFO: Running scripts is_testable 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/is_testable_uninstallable'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/is_testable_uninstallable'] 0m4.2s INFO: Running scripts pre_test 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_test_exceptions'] 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_test_exceptions'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_test_root_password'] 0m4.2s DUMP: New password: Retype new password: passwd: password updated successfully 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_test_root_password'] 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-cache', 'show', '--no-all-versions', 'q2-quality-control'] 0m4.5s DUMP: Package: q2-quality-control Version: 2020.11.1-3 Installed-Size: 457 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, python3-biom-format, python3-h5py, python3-seaborn, python3-numpy, python3-pandas, python3-scipy, qiime, q2templates, q2-taxa, bowtie2, ncbi-blast+, samtools, vsearch Description-en: QIIME 2 plugin for quality assurance of feature and sequence data QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features: * Integrated and automatic tracking of data provenance * Semantic type system * Plugin system for extending microbiome analysis functionality * Support for multiple types of user interfaces (e.g. API, command line, graphical) . QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline. . QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed. Description-md5: c482bb89f1c63b4de2169ec655268f05 Homepage: https://qiime2.org/ Section: science Priority: optional Filename: pool/main/q/q2-quality-control/q2-quality-control_2020.11.1-3_all.deb Size: 247752 MD5sum: 1733c7f9997190869e32f728b11d83e8 SHA256: e714ab58585e961358882a232c803fbb564cdb2c35a7f779dc7ca683ac00d87e 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-cache', 'show', '--no-all-versions', 'q2-quality-control'] 0m4.5s INFO: apt-cache knows about the following packages: q2-quality-control 0m4.5s INFO: Running scripts pre_install 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_database-server'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_database-server'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_exceptions'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_exceptions'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_extras'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_extras'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_foreign_architecture'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-cache', 'policy'] 0m4.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian bullseye/main amd64 Packages release v=11.9,o=Debian,a=oldstable,n=bullseye,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-cache', 'policy'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-cache', 'policy', 'q2-quality-control'] 0m4.6s DUMP: q2-quality-control: Installed: (none) Candidate: 2020.11.1-3 Version table: 2020.11.1-3 500 500 http://deb.debian.org/debian bullseye/main amd64 Packages 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-cache', 'policy', 'q2-quality-control'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-get', '-y', 'install', 'q2-quality-control'] 1m3.9s DUMP: Reading package lists... Building dependency tree... The following additional packages will be installed: blt bowtie2 ca-certificates cython3 fontconfig-config fonts-glyphicons-halflings fonts-lyx libaec0 libblas3 libbrotli1 libbsd0 libc-ares2 libcurl3-gnutls libdeflate0 libexpat1 libfontconfig1 libfreetype6 libgdbm-compat4 libgdbm6 libgfortran5 libgomp1 libhdf5-103-1 libhdf5-hl-100 libhts3 libicu67 libimagequant0 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 liblmdb0 liblzf1 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libmpdec3 libncurses6 libncursesw6 libnghttp2-14 libnode72 libopenblas-base libopenblas0 libopenblas0-pthread libperl5.32 libpng16-16 libprocps8 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssw0 libsz2 libtbb2 libtcl8.6 libtiff5 libtk8.6 libuv1 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libyajl2 libyaml-0-2 mailcap media-types mime-support ncbi-blast+ ncbi-data node-d3-color node-d3-interpolate node-d3-scale-chromatic node-natural-sort node-normalize.css node-thenby nodejs openssl perl perl-modules-5.32 procps python-matplotlib-data python3 python3-backcall python3-bibtexparser python3-biom-format python3-cachecontrol python3-certifi python3-chardet python3-click python3-colorama python3-cycler python3-dateutil python3-decorator python3-distutils python3-future python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-ijson python3-ipython python3-ipython-genutils python3-jedi python3-jinja2 python3-joblib python3-kiwisolver python3-lib2to3 python3-lockfile python3-markupsafe python3-matplotlib python3-minimal python3-msgpack python3-natsort python3-networkx python3-numpy python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pickleshare python3-pil python3-pkg-resources python3-prompt-toolkit python3-ptyprocess python3-pygments python3-pyparsing python3-requests python3-scipy python3-seaborn python3-setuptools python3-six python3-skbio python3-sklearn python3-sklearn-lib python3-threadpoolctl python3-tk python3-traitlets python3-tz python3-tzlocal python3-urllib3 python3-wcwidth python3-yaml python3.9 python3.9-minimal q2-taxa q2-types q2templates qiime readline-common samtools sensible-utils tk8.6-blt2.5 ttf-bitstream-vera ucf vsearch x11-common Suggested packages: blt-demo bowtie2-examples cython-doc gdbm-l10n libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 libjs-html5shiv npm perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make libtap-harness-archive-perl python3-doc python3-venv python-biom-format-doc python-cycler-doc python-future-doc python-h5py-doc python-ipython-doc python-jinja2-doc python-lockfile-doc dvipng ffmpeg ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-nose python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft python-natsort-doc python-networkx-doc gcc gfortran python-numpy-doc python3-dev python3-numpy-dbg python3-pytest python-pandas-doc python3-statsmodels python-pexpect-doc python-pil-doc python3-pil-dbg python-pygments-doc python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-setuptools-doc python-skbio-doc python3-dap python-sklearn-doc tix python3-tk-dbg python3.9-venv python3.9-doc binutils binfmt-support readline-doc cwltool Recommended packages: python3-dev gcc javascript-common libldap-common libgpm2 publicsuffix libsasl2-modules bzip2 file xz-utils nodejs-doc netbase psmisc python3-pytest python3-simplejson python3-psutil python3-gdal python3-pydot python3-pygraphviz python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-xlwt python3-bs4 python3-html5lib python3-lxml python3-tables python3-numba python3-olefile g++ | c++-compiler python3-patsy python3-nose q2cli q2-cutadapt q2-metadata q2-demux q2-quality-filter q2-feature-classifier q2-feature-table The following NEW packages will be installed: blt bowtie2 ca-certificates cython3 fontconfig-config fonts-glyphicons-halflings fonts-lyx libaec0 libblas3 libbrotli1 libbsd0 libc-ares2 libcurl3-gnutls libdeflate0 libexpat1 libfontconfig1 libfreetype6 libgdbm-compat4 libgdbm6 libgfortran5 libgomp1 libhdf5-103-1 libhdf5-hl-100 libhts3 libicu67 libimagequant0 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 liblmdb0 liblzf1 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libmpdec3 libncurses6 libncursesw6 libnghttp2-14 libnode72 libopenblas-base libopenblas0 libopenblas0-pthread libperl5.32 libpng16-16 libprocps8 libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libquadmath0 libreadline8 librtmp1 libsasl2-2 libsasl2-modules-db libsqlite3-0 libssh2-1 libssw0 libsz2 libtbb2 libtcl8.6 libtiff5 libtk8.6 libuv1 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libyajl2 libyaml-0-2 mailcap media-types mime-support ncbi-blast+ ncbi-data node-d3-color node-d3-interpolate node-d3-scale-chromatic node-natural-sort node-normalize.css node-thenby nodejs openssl perl perl-modules-5.32 procps python-matplotlib-data python3 python3-backcall python3-bibtexparser python3-biom-format python3-cachecontrol python3-certifi python3-chardet python3-click python3-colorama python3-cycler python3-dateutil python3-decorator python3-distutils python3-future python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-ijson python3-ipython python3-ipython-genutils python3-jedi python3-jinja2 python3-joblib python3-kiwisolver python3-lib2to3 python3-lockfile python3-markupsafe python3-matplotlib python3-minimal python3-msgpack python3-natsort python3-networkx python3-numpy python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pickleshare python3-pil python3-pkg-resources python3-prompt-toolkit python3-ptyprocess python3-pygments python3-pyparsing python3-requests python3-scipy python3-seaborn python3-setuptools python3-six python3-skbio python3-sklearn python3-sklearn-lib python3-threadpoolctl python3-tk python3-traitlets python3-tz python3-tzlocal python3-urllib3 python3-wcwidth python3-yaml python3.9 python3.9-minimal q2-quality-control q2-taxa q2-types q2templates qiime readline-common samtools sensible-utils tk8.6-blt2.5 ttf-bitstream-vera ucf vsearch x11-common 0 upgraded, 177 newly installed, 0 to remove and 0 not upgraded. Need to get 114 MB of archives. After this operation, 510 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main amd64 perl-modules-5.32 all 5.32.1-4+deb11u3 [2823 kB] Get:2 http://deb.debian.org/debian bullseye/main amd64 libgdbm6 amd64 1.19-2 [64.9 kB] Get:3 http://deb.debian.org/debian bullseye/main amd64 libgdbm-compat4 amd64 1.19-2 [44.7 kB] Get:4 http://deb.debian.org/debian bullseye/main amd64 libperl5.32 amd64 5.32.1-4+deb11u3 [4121 kB] Get:5 http://deb.debian.org/debian bullseye/main amd64 perl amd64 5.32.1-4+deb11u3 [293 kB] Get:6 http://deb.debian.org/debian bullseye/main amd64 node-normalize.css all 8.0.1-3 [12.5 kB] Get:7 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get:8 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get:9 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get:10 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get:11 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get:12 http://deb.debian.org/debian bullseye/main amd64 mailcap all 3.69 [31.7 kB] Get:13 http://deb.debian.org/debian bullseye/main amd64 mime-support all 3.66 [10.9 kB] Get:14 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get:15 http://deb.debian.org/debian bullseye/main amd64 libncursesw6 amd64 6.2+20201114-2+deb11u2 [132 kB] Get:16 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get:17 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:18 http://deb.debian.org/debian bullseye/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:19 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get:20 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get:21 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get:22 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get:23 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2+deb11u2 [102 kB] Get:24 http://deb.debian.org/debian bullseye/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get:25 http://deb.debian.org/debian bullseye/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get:26 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:27 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1w-0+deb11u1 [859 kB] Get:28 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get:29 http://deb.debian.org/debian bullseye/main amd64 ucf all 3.0043 [74.0 kB] Get:30 http://deb.debian.org/debian bullseye/main amd64 libtcl8.6 amd64 8.6.11+dfsg-1 [1018 kB] Get:31 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:32 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:33 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1+deb11u1 [418 kB] Get:34 http://deb.debian.org/debian bullseye/main amd64 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get:35 http://deb.debian.org/debian bullseye/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:36 http://deb.debian.org/debian bullseye/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:37 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:38 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get:39 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1+deb11u1 [108 kB] Get:40 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:41 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get:42 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1+deb11u2 [311 kB] Get:43 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1+deb11u2 [772 kB] Get:44 http://deb.debian.org/debian bullseye/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:45 http://deb.debian.org/debian bullseye/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:46 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get:47 http://deb.debian.org/debian bullseye/main amd64 x11-common all 1:7.7+22 [252 kB] Get:48 http://deb.debian.org/debian bullseye/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:49 http://deb.debian.org/debian bullseye/main amd64 libtk8.6 amd64 8.6.11-2 [780 kB] Get:50 http://deb.debian.org/debian bullseye/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get:51 http://deb.debian.org/debian bullseye/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get:52 http://deb.debian.org/debian bullseye/main amd64 libtbb2 amd64 2020.3-1 [161 kB] Get:53 http://deb.debian.org/debian bullseye/main amd64 bowtie2 amd64 2.4.2-2+b3 [1342 kB] Get:54 http://deb.debian.org/debian bullseye/main amd64 cython3 amd64 0.29.21-3+b1 [1312 kB] Get:55 http://deb.debian.org/debian bullseye/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-2 [164 kB] Get:56 http://deb.debian.org/debian bullseye/main amd64 fonts-lyx all 2.3.6-1 [205 kB] Get:57 http://deb.debian.org/debian bullseye/main amd64 libaec0 amd64 1.0.4-1 [20.3 kB] Get:58 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3+deb11u1 [153 kB] Get:59 http://deb.debian.org/debian bullseye/main amd64 libc-ares2 amd64 1.17.1-1+deb11u3 [102 kB] Get:60 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1+deb11u1 [69.1 kB] Get:61 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1+deb11u1 [106 kB] Get:62 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3+deb11u1 [232 kB] Get:63 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1+deb11u1 [77.2 kB] Get:64 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:65 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:66 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get:67 http://deb.debian.org/debian bullseye/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+deb11u11 [344 kB] Get:68 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get:69 http://deb.debian.org/debian bullseye/main amd64 libquadmath0 amd64 10.2.1-6 [145 kB] Get:70 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get:71 http://deb.debian.org/debian bullseye/main amd64 libgomp1 amd64 10.2.1-6 [99.9 kB] Get:72 http://deb.debian.org/debian bullseye/main amd64 libsz2 amd64 1.0.4-1 [6760 B] Get:73 http://deb.debian.org/debian bullseye/main amd64 libhdf5-103-1 amd64 1.10.6+repack-4+deb11u1 [1189 kB] Get:74 http://deb.debian.org/debian bullseye/main amd64 libhdf5-hl-100 amd64 1.10.6+repack-4+deb11u1 [81.8 kB] Get:75 http://deb.debian.org/debian bullseye/main amd64 libhts3 amd64 1.11-4 [378 kB] Get:76 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:77 http://deb.debian.org/debian bullseye/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get:78 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:79 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get:80 http://deb.debian.org/debian bullseye/main amd64 libjs-bootstrap all 3.4.1+dfsg-2 [173 kB] Get:81 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get:82 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-ui all 1.12.1+dfsg-8+deb11u2 [232 kB] Get:83 http://deb.debian.org/debian bullseye/main amd64 libopenblas0-pthread amd64 0.3.13+ds-3+deb11u1 [6016 kB] Get:84 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3+deb11u1 [2166 kB] Get:85 http://deb.debian.org/debian bullseye/main amd64 liblbfgsb0 amd64 3.0+dfsg.3-9 [28.5 kB] Get:86 http://deb.debian.org/debian bullseye/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get:87 http://deb.debian.org/debian bullseye/main amd64 liblmdb0 amd64 0.9.24-1 [45.0 kB] Get:88 http://deb.debian.org/debian bullseye/main amd64 liblzf1 amd64 3.6-3 [10.2 kB] Get:89 http://deb.debian.org/debian bullseye/main amd64 libmbedcrypto3 amd64 2.16.9-0.1 [219 kB] Get:90 http://deb.debian.org/debian bullseye/main amd64 libmbedx509-0 amd64 2.16.9-0.1 [109 kB] Get:91 http://deb.debian.org/debian bullseye/main amd64 libmbedtls12 amd64 2.16.9-0.1 [139 kB] Get:92 http://deb.debian.org/debian bullseye/main amd64 libuv1 amd64 1.40.0-2 [132 kB] Get:93 http://deb.debian.org/debian bullseye/main amd64 libnode72 amd64 12.22.12~dfsg-1~deb11u4 [8332 kB] Get:94 http://deb.debian.org/debian bullseye/main amd64 libopenblas0 amd64 0.3.13+ds-3+deb11u1 [32.9 kB] Get:95 http://deb.debian.org/debian bullseye/main amd64 libopenblas-base amd64 0.3.13+ds-3+deb11u1 [31.7 kB] Get:96 http://deb.debian.org/debian bullseye/main amd64 libssw0 amd64 1.1-13 [19.7 kB] Get:97 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1+deb11u2 [259 kB] Get:98 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1+deb11u5 [290 kB] Get:99 http://deb.debian.org/debian bullseye/main amd64 libwebpdemux2 amd64 0.6.1-2.1+deb11u2 [87.8 kB] Get:100 http://deb.debian.org/debian bullseye/main amd64 libwebpmux3 amd64 0.6.1-2.1+deb11u2 [97.7 kB] Get:101 http://deb.debian.org/debian bullseye/main amd64 libyajl2 amd64 2.1.0-3+deb11u2 [24.2 kB] Get:102 http://deb.debian.org/debian bullseye/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:103 http://deb.debian.org/debian bullseye/main amd64 ncbi-data all 6.1.20170106+dfsg1-9 [3556 kB] Get:104 http://deb.debian.org/debian bullseye/main amd64 ncbi-blast+ amd64 2.11.0+ds-1 [11.3 MB] Get:105 http://deb.debian.org/debian bullseye/main amd64 nodejs amd64 12.22.12~dfsg-1~deb11u4 [148 kB] Get:106 http://deb.debian.org/debian bullseye/main amd64 node-d3-color all 1.2.8-2 [15.0 kB] Get:107 http://deb.debian.org/debian bullseye/main amd64 node-d3-interpolate all 1.4.0-2 [18.5 kB] Get:108 http://deb.debian.org/debian bullseye/main amd64 node-d3-scale-chromatic all 1.5.0-2 [18.5 kB] Get:109 http://deb.debian.org/debian bullseye/main amd64 node-natural-sort all 1.0.0-2 [3836 B] Get:110 http://deb.debian.org/debian bullseye/main amd64 node-thenby all 1.3.4+git20200720.0fd165a+ds-2 [4728 B] Get:111 http://deb.debian.org/debian bullseye/main amd64 python-matplotlib-data all 3.3.4-1 [4153 kB] Get:112 http://deb.debian.org/debian bullseye/main amd64 python3-backcall all 0.2.0-1 [10.7 kB] Get:113 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get:114 http://deb.debian.org/debian bullseye/main amd64 python3-future all 0.18.2-5 [349 kB] Get:115 http://deb.debian.org/debian bullseye/main amd64 python3-pyparsing all 2.4.7-1 [109 kB] Get:116 http://deb.debian.org/debian bullseye/main amd64 python3-bibtexparser all 1.1.0+ds-3 [31.5 kB] Get:117 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get:118 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get:119 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get:120 http://deb.debian.org/debian bullseye/main amd64 python3-h5py-serial amd64 2.10.0-9+b2 [655 kB] Get:121 http://deb.debian.org/debian bullseye/main amd64 python3-h5py all 2.10.0-9 [11.4 kB] Get:122 http://deb.debian.org/debian bullseye/main amd64 python3-colorama all 0.4.4-1 [28.5 kB] Get:123 http://deb.debian.org/debian bullseye/main amd64 python3-click all 7.1.2-1 [75.7 kB] Get:124 http://deb.debian.org/debian bullseye/main amd64 python3-dateutil all 2.8.1-6 [79.2 kB] Get:125 http://deb.debian.org/debian bullseye/main amd64 python3-tz all 2021.1-1 [34.8 kB] Get:126 http://deb.debian.org/debian bullseye/main amd64 python3-pandas-lib amd64 1.1.5+dfsg-2 [3287 kB] Get:127 http://deb.debian.org/debian bullseye/main amd64 python3-pandas all 1.1.5+dfsg-2 [2096 kB] Get:128 http://deb.debian.org/debian bullseye/main amd64 python3-decorator all 4.4.2-2 [15.8 kB] Get:129 http://deb.debian.org/debian bullseye/main amd64 python3-scipy amd64 1.6.0-2 [12.3 MB] Get:130 http://deb.debian.org/debian bullseye/main amd64 python3-biom-format amd64 2.1.10-1+b1 [132 kB] Get:131 http://deb.debian.org/debian bullseye/main amd64 python3-certifi all 2020.6.20-1 [151 kB] Get:132 http://deb.debian.org/debian bullseye/main amd64 python3-chardet all 4.0.0-1 [99.0 kB] Get:133 http://deb.debian.org/debian bullseye/main amd64 python3-idna all 2.10-1 [37.4 kB] Get:134 http://deb.debian.org/debian bullseye/main amd64 python3-urllib3 all 1.26.5-1~exp1 [114 kB] Get:135 http://deb.debian.org/debian bullseye/main amd64 python3-requests all 2.25.1+dfsg-2 [69.3 kB] Get:136 http://deb.debian.org/debian bullseye/main amd64 python3-msgpack amd64 1.0.0-6+b1 [69.2 kB] Get:137 http://deb.debian.org/debian bullseye/main amd64 python3-cachecontrol all 0.12.6-1 [16.4 kB] Get:138 http://deb.debian.org/debian bullseye/main amd64 python3-cycler all 0.10.0-3 [8084 B] Get:139 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get:140 http://deb.debian.org/debian bullseye/main amd64 python3-hdmedians amd64 0.14.1-1+b2 [103 kB] Get:141 http://deb.debian.org/debian bullseye/main amd64 python3-ijson amd64 3.1.4-1 [36.6 kB] Get:142 http://deb.debian.org/debian bullseye/main amd64 python3-parso all 0.8.1-1 [65.9 kB] Get:143 http://deb.debian.org/debian bullseye/main amd64 python3-jedi all 0.18.0-1 [620 kB] Get:144 http://deb.debian.org/debian bullseye/main amd64 python3-ptyprocess all 0.7.0-1 [13.6 kB] Get:145 http://deb.debian.org/debian bullseye/main amd64 python3-pexpect all 4.8.0-2 [54.9 kB] Get:146 http://deb.debian.org/debian bullseye/main amd64 python3-pickleshare all 0.7.5-3 [7604 B] Get:147 http://deb.debian.org/debian bullseye/main amd64 python3-wcwidth all 0.1.9+dfsg1-2 [18.2 kB] Get:148 http://deb.debian.org/debian bullseye/main amd64 python3-prompt-toolkit all 3.0.14-1 [258 kB] Get:149 http://deb.debian.org/debian bullseye/main amd64 python3-pygments all 2.7.1+dfsg-2.1 [657 kB] Get:150 http://deb.debian.org/debian bullseye/main amd64 python3-ipython-genutils all 0.2.0-4 [21.4 kB] Get:151 http://deb.debian.org/debian bullseye/main amd64 python3-traitlets all 5.0.5-1 [84.4 kB] Get:152 http://deb.debian.org/debian bullseye/main amd64 python3-ipython all 7.20.0-1+deb11u1 [517 kB] Get:153 http://deb.debian.org/debian bullseye/main amd64 python3-markupsafe amd64 1.1.1-1+b3 [15.2 kB] Get:154 http://deb.debian.org/debian bullseye/main amd64 python3-jinja2 all 2.11.3-1 [114 kB] Get:155 http://deb.debian.org/debian bullseye/main amd64 python3-joblib all 0.17.0-4+deb11u1 [214 kB] Get:156 http://deb.debian.org/debian bullseye/main amd64 python3-kiwisolver amd64 1.3.1-1+b1 [55.7 kB] Get:157 http://deb.debian.org/debian bullseye/main amd64 python3-lockfile all 1:0.12.2-2.2 [17.3 kB] Get:158 http://deb.debian.org/debian bullseye/main amd64 python3-pil amd64 8.1.2+dfsg-0.3+deb11u1 [445 kB] Get:159 http://deb.debian.org/debian bullseye/main amd64 python3-matplotlib amd64 3.3.4-1 [4163 kB] Get:160 http://deb.debian.org/debian bullseye/main amd64 python3-natsort all 7.1.0-1 [37.5 kB] Get:161 http://deb.debian.org/debian bullseye/main amd64 python3-networkx all 2.5+ds-2 [900 kB] Get:162 http://deb.debian.org/debian bullseye/main amd64 python3-tk amd64 3.9.2-1 [101 kB] Get:163 http://deb.debian.org/debian bullseye/main amd64 python3-seaborn all 0.11.1-1 [206 kB] Get:164 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Get:165 http://deb.debian.org/debian bullseye/main amd64 python3-sklearn-lib amd64 0.23.2-5 [1884 kB] Get:166 http://deb.debian.org/debian bullseye/main amd64 python3-threadpoolctl all 2.1.0-1 [15.3 kB] Get:167 http://deb.debian.org/debian bullseye/main amd64 python3-sklearn all 0.23.2-5 [1818 kB] Get:168 http://deb.debian.org/debian bullseye/main amd64 python3-skbio amd64 0.5.6-4 [647 kB] Get:169 http://deb.debian.org/debian bullseye/main amd64 python3-tzlocal all 2.1-1 [18.5 kB] Get:170 http://deb.debian.org/debian bullseye/main amd64 python3-yaml amd64 5.3.1-5 [138 kB] Get:171 http://deb.debian.org/debian bullseye/main amd64 qiime all 2020.11.1-1 [150 kB] Get:172 http://deb.debian.org/debian bullseye/main amd64 q2templates all 2020.11.1+dfsg-1 [12.2 kB] Get:173 http://deb.debian.org/debian bullseye/main amd64 q2-types all 2020.11.1-1 [59.3 kB] Get:174 http://deb.debian.org/debian bullseye/main amd64 q2-taxa all 2020.11.1+dfsg-2 [44.6 kB] Get:175 http://deb.debian.org/debian bullseye/main amd64 samtools amd64 1.11-1 [545 kB] Get:176 http://deb.debian.org/debian bullseye/main amd64 vsearch amd64 2.15.2-3 [351 kB] Get:177 http://deb.debian.org/debian bullseye/main amd64 q2-quality-control all 2020.11.1-3 [248 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 114 MB in 1s (100 MB/s) Selecting previously unselected package perl-modules-5.32. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6674 files and directories currently installed.) Preparing to unpack .../0-perl-modules-5.32_5.32.1-4+deb11u3_all.deb ... Unpacking perl-modules-5.32 (5.32.1-4+deb11u3) ... Selecting previously unselected package libgdbm6:amd64. Preparing to unpack .../1-libgdbm6_1.19-2_amd64.deb ... Unpacking libgdbm6:amd64 (1.19-2) ... Selecting previously unselected package libgdbm-compat4:amd64. 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Selecting previously unselected package python3.9-minimal. Preparing to unpack .../8-python3.9-minimal_3.9.2-1_amd64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:amd64 (3.9.2-1) ... Setting up libexpat1:amd64 (2.2.10-2+deb11u5) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8956 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.9.2-3_amd64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../02-mailcap_3.69_all.deb ... Unpacking mailcap (3.69) ... Selecting previously unselected package mime-support. Preparing to unpack .../03-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../04-libmpdec3_2.5.1-1_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-1) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../05-libncursesw6_6.2+20201114-2+deb11u2_amd64.deb ... Unpacking libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Selecting previously unselected package readline-common. Preparing to unpack .../06-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../07-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../08-libsqlite3-0_3.34.1-3_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.34.1-3) ... Selecting previously unselected package libpython3.9-stdlib:amd64. Preparing to unpack .../09-libpython3.9-stdlib_3.9.2-1_amd64.deb ... Unpacking libpython3.9-stdlib:amd64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../10-python3.9_3.9.2-1_amd64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../11-libpython3-stdlib_3.9.2-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9418 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_amd64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../001-libncurses6_6.2+20201114-2+deb11u2_amd64.deb ... Unpacking libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Selecting previously unselected package libprocps8:amd64. Preparing to unpack .../002-libprocps8_2%3a3.3.17-5_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a3.3.17-5_amd64.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_1.1.1w-0+deb11u1_amd64.deb ... Unpacking openssl (1.1.1w-0+deb11u1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../006-ca-certificates_20210119_all.deb ... Unpacking ca-certificates (20210119) ... Selecting previously unselected package ucf. Preparing to unpack .../007-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../008-libtcl8.6_8.6.11+dfsg-1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.11+dfsg-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../009-libbrotli1_1.0.9-2+b2_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b2) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../010-libpng16-16_1.6.37-3_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.37-3) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../011-libfreetype6_2.10.4+dfsg-1+deb11u1_amd64.deb ... Unpacking libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Selecting previously unselected package ttf-bitstream-vera. Preparing to unpack .../012-ttf-bitstream-vera_1.10-8.1_all.deb ... Unpacking ttf-bitstream-vera (1.10-8.1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../013-fontconfig-config_2.13.1-4.2_all.deb ... Unpacking fontconfig-config (2.13.1-4.2) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../014-libfontconfig1_2.13.1-4.2_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-4.2) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../015-libxau6_1%3a1.0.9-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../016-libmd0_1.0.3-3_amd64.deb ... Unpacking libmd0:amd64 (1.0.3-3) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../017-libbsd0_0.11.3-1+deb11u1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.3-1+deb11u1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../018-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../019-libxcb1_1.14-3_amd64.deb ... Unpacking libxcb1:amd64 (1.14-3) ... Selecting previously unselected package libx11-data. Preparing to unpack .../020-libx11-data_2%3a1.7.2-1+deb11u2_all.deb ... Unpacking libx11-data (2:1.7.2-1+deb11u2) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../021-libx11-6_2%3a1.7.2-1+deb11u2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../022-libxrender1_1%3a0.9.10-1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../023-libxft2_2.3.2-2_amd64.deb ... Unpacking libxft2:amd64 (2.3.2-2) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../024-libxext6_2%3a1.3.3-1.1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.3-1.1) ... Selecting previously unselected package x11-common. Preparing to unpack .../025-x11-common_1%3a7.7+22_all.deb ... Unpacking x11-common (1:7.7+22) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../026-libxss1_1%3a1.2.3-1_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../027-libtk8.6_8.6.11-2_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.11-2) ... Selecting previously unselected package tk8.6-blt2.5. Preparing to unpack .../028-tk8.6-blt2.5_2.5.3+dfsg-4.1_amd64.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Selecting previously unselected package blt. Preparing to unpack .../029-blt_2.5.3+dfsg-4.1_amd64.deb ... Unpacking blt (2.5.3+dfsg-4.1) ... Selecting previously unselected package libtbb2:amd64. Preparing to unpack .../030-libtbb2_2020.3-1_amd64.deb ... Unpacking libtbb2:amd64 (2020.3-1) ... Selecting previously unselected package bowtie2. Preparing to unpack .../031-bowtie2_2.4.2-2+b3_amd64.deb ... Unpacking bowtie2 (2.4.2-2+b3) ... Selecting previously unselected package cython3. Preparing to unpack .../032-cython3_0.29.21-3+b1_amd64.deb ... Unpacking cython3 (0.29.21-3+b1) ... 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Selecting previously unselected package python3-traitlets. Preparing to unpack .../129-python3-traitlets_5.0.5-1_all.deb ... Unpacking python3-traitlets (5.0.5-1) ... Selecting previously unselected package python3-ipython. Preparing to unpack .../130-python3-ipython_7.20.0-1+deb11u1_all.deb ... Unpacking python3-ipython (7.20.0-1+deb11u1) ... Selecting previously unselected package python3-markupsafe. Preparing to unpack .../131-python3-markupsafe_1.1.1-1+b3_amd64.deb ... Unpacking python3-markupsafe (1.1.1-1+b3) ... Selecting previously unselected package python3-jinja2. Preparing to unpack .../132-python3-jinja2_2.11.3-1_all.deb ... Unpacking python3-jinja2 (2.11.3-1) ... Selecting previously unselected package python3-joblib. Preparing to unpack .../133-python3-joblib_0.17.0-4+deb11u1_all.deb ... Unpacking python3-joblib (0.17.0-4+deb11u1) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../134-python3-kiwisolver_1.3.1-1+b1_amd64.deb ... Unpacking python3-kiwisolver (1.3.1-1+b1) ... Selecting previously unselected package python3-lockfile. Preparing to unpack .../135-python3-lockfile_1%3a0.12.2-2.2_all.deb ... Unpacking python3-lockfile (1:0.12.2-2.2) ... Selecting previously unselected package python3-pil:amd64. Preparing to unpack .../136-python3-pil_8.1.2+dfsg-0.3+deb11u1_amd64.deb ... Unpacking python3-pil:amd64 (8.1.2+dfsg-0.3+deb11u1) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../137-python3-matplotlib_3.3.4-1_amd64.deb ... Unpacking python3-matplotlib (3.3.4-1) ... Selecting previously unselected package python3-natsort. Preparing to unpack .../138-python3-natsort_7.1.0-1_all.deb ... Unpacking python3-natsort (7.1.0-1) ... Selecting previously unselected package python3-networkx. Preparing to unpack .../139-python3-networkx_2.5+ds-2_all.deb ... Unpacking python3-networkx (2.5+ds-2) ... Selecting previously unselected package python3-tk:amd64. Preparing to unpack .../140-python3-tk_3.9.2-1_amd64.deb ... Unpacking python3-tk:amd64 (3.9.2-1) ... Selecting previously unselected package python3-seaborn. Preparing to unpack .../141-python3-seaborn_0.11.1-1_all.deb ... Unpacking python3-seaborn (0.11.1-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../142-python3-setuptools_52.0.0-4_all.deb ... Unpacking python3-setuptools (52.0.0-4) ... Selecting previously unselected package python3-sklearn-lib:amd64. Preparing to unpack .../143-python3-sklearn-lib_0.23.2-5_amd64.deb ... Unpacking python3-sklearn-lib:amd64 (0.23.2-5) ... Selecting previously unselected package python3-threadpoolctl. Preparing to unpack .../144-python3-threadpoolctl_2.1.0-1_all.deb ... Unpacking python3-threadpoolctl (2.1.0-1) ... Selecting previously unselected package python3-sklearn. Preparing to unpack .../145-python3-sklearn_0.23.2-5_all.deb ... Unpacking python3-sklearn (0.23.2-5) ... Selecting previously unselected package python3-skbio. Preparing to unpack .../146-python3-skbio_0.5.6-4_amd64.deb ... Unpacking python3-skbio (0.5.6-4) ... Selecting previously unselected package python3-tzlocal. Preparing to unpack .../147-python3-tzlocal_2.1-1_all.deb ... Unpacking python3-tzlocal (2.1-1) ... Selecting previously unselected package python3-yaml. Preparing to unpack .../148-python3-yaml_5.3.1-5_amd64.deb ... Unpacking python3-yaml (5.3.1-5) ... Selecting previously unselected package qiime. Preparing to unpack .../149-qiime_2020.11.1-1_all.deb ... Unpacking qiime (2020.11.1-1) ... Selecting previously unselected package q2templates. Preparing to unpack .../150-q2templates_2020.11.1+dfsg-1_all.deb ... Unpacking q2templates (2020.11.1+dfsg-1) ... Selecting previously unselected package q2-types. Preparing to unpack .../151-q2-types_2020.11.1-1_all.deb ... Unpacking q2-types (2020.11.1-1) ... Selecting previously unselected package q2-taxa. Preparing to unpack .../152-q2-taxa_2020.11.1+dfsg-2_all.deb ... Unpacking q2-taxa (2020.11.1+dfsg-2) ... Selecting previously unselected package samtools. Preparing to unpack .../153-samtools_1.11-1_amd64.deb ... Unpacking samtools (1.11-1) ... Selecting previously unselected package vsearch. Preparing to unpack .../154-vsearch_2.15.2-3_amd64.deb ... Unpacking vsearch (2.15.2-3) ... Selecting previously unselected package q2-quality-control. Preparing to unpack .../155-q2-quality-control_2020.11.1-3_all.deb ... Unpacking q2-quality-control (2020.11.1-3) ... Setting up media-types (4.0.0) ... Setting up liblmdb0:amd64 (0.9.24-1) ... Setting up liblcms2-2:amd64 (2.12~rc1-2) ... Setting up ncbi-data (6.1.20170106+dfsg1-9) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up ttf-bitstream-vera (1.10-8.1) ... Setting up libicu67:amd64 (67.1-7) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up vsearch (2.15.2-3) ... Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-2) ... Setting up fonts-lyx (2.3.6-1) ... Setting up perl-modules-5.32 (5.32.1-4+deb11u3) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libsqlite3-0:amd64 (3.34.1-3) ... Setting up libtbb2:amd64 (2020.3-1) ... Setting up libyajl2:amd64 (2.1.0-3+deb11u2) ... Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:amd64 (1.43.0-1+deb11u1) ... Setting up libdeflate0:amd64 (1.7-1) ... Setting up libc-ares2:amd64 (1.17.1-1+deb11u3) ... Setting up libgomp1:amd64 (10.2.1-6) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libaec0:amd64 (1.0.4-1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libblas3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libuv1:amd64 (1.40.0-2) ... Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up libx11-data (2:1.7.2-1+deb11u2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:amd64 (6.2+20201114-2+deb11u2) ... Setting up liblzf1:amd64 (3.6-3) ... Setting up libquadmath0:amd64 (10.2.1-6) ... Setting up libimagequant0:amd64 (2.12.2-1.1) ... Setting up libpng16-16:amd64 (1.6.37-3) ... Setting up libtcl8.6:amd64 (8.6.11+dfsg-1) ... Setting up libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Setting up libncursesw6:amd64 (6.2+20201114-2+deb11u2) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libmbedcrypto3:amd64 (2.16.9-0.1) ... Setting up libssh2-1:amd64 (1.9.0-2) ... Setting up libtiff5:amd64 (4.2.0-1+deb11u5) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up python-matplotlib-data (3.3.4-1) ... Setting up openssl (1.1.1w-0+deb11u1) ... Setting up libwebpmux3:amd64 (0.6.1-2.1+deb11u2) ... Setting up libbsd0:amd64 (0.11.3-1+deb11u1) ... Setting up node-normalize.css (8.0.1-3) ... Setting up libssw0:amd64 (1.1-13) ... Setting up readline-common (8.1-1) ... Setting up node-thenby (1.3.4+git20200720.0fd165a+ds-2) ... Setting up libprocps8:amd64 (2:3.3.17-5) ... Setting up libsz2:amd64 (1.0.4-1) ... Setting up libjs-bootstrap (3.4.1+dfsg-2) ... Setting up libgdbm6:amd64 (1.19-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3) ... Setting up libopenblas0-pthread:amd64 (0.3.13+ds-3+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libmbedx509-0:amd64 (2.16.9-0.1) ... Setting up libwebpdemux2:amd64 (0.6.1-2.1+deb11u2) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libmbedtls12:amd64 (2.16.9-0.1) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Setting up libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u11) ... Setting up libnode72:amd64 (12.22.12~dfsg-1~deb11u4) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libjs-jquery-ui (1.12.1+dfsg-8+deb11u2) ... Setting up libfreetype6:amd64 (2.10.4+dfsg-1+deb11u1) ... Setting up libgdbm-compat4:amd64 (1.19-2) ... Setting up ucf (3.0043) ... Setting up libperl5.32:amd64 (5.32.1-4+deb11u3) ... Setting up libhdf5-103-1:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libopenblas0:amd64 (0.3.13+ds-3+deb11u1) ... Setting up procps (2:3.3.17-5) ... Setting up libx11-6:amd64 (2:1.7.2-1+deb11u2) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Setting up libhdf5-hl-100:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libopenblas-base:amd64 (0.3.13+ds-3+deb11u1) ... Setting up libhts3:amd64 (1.11-4) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up libxext6:amd64 (2:1.3.3-1.1) ... Setting up nodejs (12.22.12~dfsg-1~deb11u4) ... update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode Setting up samtools (1.11-1) ... Setting up perl (5.32.1-4+deb11u3) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up mailcap (3.69) ... Setting up python3.9 (3.9.2-1) ... Setting up node-d3-color (1.2.8-2) ... Setting up libxft2:amd64 (2.3.2-2) ... Setting up node-d3-interpolate (1.4.0-2) ... Setting up mime-support (3.66) ... Setting up node-natural-sort (1.0.0-2) ... Setting up node-d3-scale-chromatic (1.5.0-2) ... Setting up libtk8.6:amd64 (8.6.11-2) ... Setting up python3 (3.9.2-3) ... Setting up python3-markupsafe (1.1.1-1+b3) ... Setting up python3-tz (2021.1-1) ... Setting up python3-natsort (7.1.0-1) ... Setting up bowtie2 (2.4.2-2+b3) ... Setting up ncbi-blast+ (2.11.0+ds-1) ... Setting up python3-six (1.16.0-2) ... Setting up python3-pil:amd64 (8.1.2+dfsg-0.3+deb11u1) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-jinja2 (2.11.3-1) ... Setting up python3-wcwidth (0.1.9+dfsg1-2) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-certifi (2020.6.20-1) ... Setting up python3-cycler (0.10.0-3) ... Setting up python3-kiwisolver (1.3.1-1+b1) ... Setting up python3-idna (2.10-1) ... Setting up cython3 (0.29.21-3+b1) ... Setting up python3-pickleshare (0.7.5-3) ... Setting up python3-urllib3 (1.26.5-1~exp1) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-msgpack (1.0.0-6+b1) ... Setting up python3-tzlocal (2.1-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-ptyprocess (0.7.0-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-prompt-toolkit (3.0.14-1) ... Setting up python3-distutils (3.9.2-1) ... Setting up python3-lockfile (1:0.12.2-2.2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-backcall (0.2.0-1) ... Setting up python3-ijson (3.1.4-1) ... Setting up python3-joblib (0.17.0-4+deb11u1) ... Setting up python3-parso (0.8.1-1) ... Setting up python3-colorama (0.4.4-1) ... Setting up python3-ipython-genutils (0.2.0-4) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-threadpoolctl (2.1.0-1) ... Setting up python3-yaml (5.3.1-5) ... Setting up python3-tk:amd64 (3.9.2-1) ... Setting up python3-click (7.1.2-1) ... Setting up python3-networkx (2.5+ds-2) ... Setting up python3-pygments (2.7.1+dfsg-2.1) ... Setting up python3-chardet (4.0.0-1) ... Setting up python3-pexpect (4.8.0-2) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-hdmedians (0.14.1-1+b2) ... Setting up python3-traitlets (5.0.5-1) ... Setting up python3-cachecontrol (0.12.6-1) ... Setting up python3-future (0.18.2-5) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python3-matplotlib (3.3.4-1) ... Setting up python3-scipy (1.6.0-2) ... Setting up python3-jedi (0.18.0-1) ... Setting up python3-pandas-lib:amd64 (1.1.5+dfsg-2) ... Setting up python3-sklearn-lib:amd64 (0.23.2-5) ... Setting up python3-h5py-serial (2.10.0-9+b2) ... Setting up python3-pandas (1.1.5+dfsg-2) ... Setting up python3-ipython (7.20.0-1+deb11u1) ... Setting up python3-h5py (2.10.0-9) ... Setting up python3-sklearn (0.23.2-5) ... Setting up python3-bibtexparser (1.1.0+ds-3) ... Setting up q2templates (2020.11.1+dfsg-1) ... Setting up python3-seaborn (0.11.1-1) ... Setting up qiime (2020.11.1-1) ... Setting up python3-biom-format (2.1.10-1+b1) ... Setting up python3-skbio (0.5.6-4) ... Setting up q2-types (2020.11.1-1) ... Setting up q2-taxa (2020.11.1+dfsg-2) ... Setting up q2-quality-control (2020.11.1-3) ... Processing triggers for libc-bin (2.31-13+deb11u8) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 1m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-get', '-y', 'install', 'q2-quality-control'] 1m3.9s INFO: Running scripts post_install 1m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_install_exceptions'] 1m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_install_exceptions'] 1m3.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti'] 1m5.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti'] 1m5.0s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp8p4ck1ti to sid 1m5.0s DEBUG: sources.list: deb http://deb.debian.org/debian/ sid main 1m5.0s INFO: Running scripts pre_distupgrade 1m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_distupgrade_allow_unauthenticated'] 1m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_distupgrade_exceptions'] 1m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_distupgrade_exceptions'] 1m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m5.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 1m5.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_distupgrade_zz_database-server'] 1m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 1m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-get', 'update'] 1m9.9s DUMP: Get:1 http://deb.debian.org/debian sid InRelease [198 kB] Get:2 http://deb.debian.org/debian sid/main amd64 Packages [9931 kB] Get:3 http://deb.debian.org/debian sid/main Translation-en [7222 kB] Fetched 17.4 MB in 4s (4625 kB/s) Reading package lists... 1m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-get', 'update'] 1m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-get', '-yf', 'dist-upgrade'] 3m40.3s DUMP: Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: cython3 libcares2 libicu67 libldap-2.4-2 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec3 libnode115 libopenblas-base libperl5.32 libproc2-0 libprocps8 libpython3.9-minimal libpython3.9-stdlib libquadmath0 libtbb2 libtiff5 libuv1t64 libwebp6 node-acorn node-cjs-module-lexer node-undici node-xtend nodejs perl-modules-5.32 procps python3-backcall python3-cachecontrol python3-future python3-ipython-genutils python3-joblib python3-lockfile python3-msgpack python3-pickleshare python3-sklearn python3-sklearn-lib python3-threadpoolctl python3.9 python3.9-minimal Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0 libc-ares2 libcurl3-gnutls libdb5.3 libext2fs2 libgdbm-compat4 libgdbm6 libgnutls30 libhdf5-103-1 libhdf5-hl-100 libhogweed6 libhts3 libnettle8 libnode72 libpng16-16 libpsl5 libreadline8 libsemanage1 libssh2-1 libtirpc3 libuv1 The following NEW packages will be installed: fontconfig fonts-dejavu-core fonts-dejavu-mono gcc-14-base javascript-common libapt-pkg6.0t64 libcairo2 libcap2 libcares2 libcurl3t64-gnutls libcurl4t64 libdatrie1 libdb5.3t64 libext2fs2t64 libffi8 libfribidi0 libgdbm-compat4t64 libgdbm6t64 libglib2.0-0t64 libgnutls30t64 libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libhogweed6t64 libhts3t64 libhtscodecs2 libice6 libicu72 libjs-popper.js libldap-2.5-0 liblerc4 libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libnettle8t64 libnode115 libnorm1t64 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libperl5.38t64 libpgm-5.3-0t64 libpixman-1-0 libpng16-16t64 libproc2-0 libpsl5t64 libpython3.12-minimal libpython3.12-stdlib libqhull-r8.0 libraqm0 libreadline8t64 libsemanage2 libsepol2 libsharpyuv0 libsm6 libsodium23 libssh2-1t64 libssl3t64 libthai-data libthai0 libtiff6 libtirpc3t64 libunistring5 libuv1t64 libwebp7 libxcb-render0 libxcb-shm0 libxml2 libxslt1.1 libxt6t64 libzmq5 littler netbase node-acorn node-cjs-module-lexer node-fortawesome-fontawesome-free node-undici node-xtend perl-modules-5.38 python3-appdirs python3-asttokens python3-attr python3-bcrypt python3-blinker python3-brotli python3-cffi-backend python3-charset-normalizer python3-contourpy python3-cryptography python3-dill python3-executing python3-filelock python3-flask python3-flask-sqlalchemy python3-flufl.lock python3-fonttools python3-fs python3-globus-sdk python3-greenlet python3-itsdangerous python3-jwt python3-lxml python3-lz4 python3-matplotlib-inline python3-mpmath python3-nacl python3-packaging python3-paramiko python3-parsl python3-pil.imagetk python3-platformdirs python3-psutil python3-public python3-pure-eval python3-py python3-setproctitle python3-sqlalchemy python3-stack-data python3-sympy python3-tblib python3-tomlkit python3-typeguard python3-typeshed python3-typing-extensions python3-ufolib2 python3-unicodedata2 python3-werkzeug python3-zmq python3.12 python3.12-minimal r-base-core r-bioc-biocgenerics r-bioc-decontam r-cran-cli r-cran-colorspace r-cran-fansi r-cran-farver r-cran-getopt r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-isoband r-cran-labeling r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-optparse r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-reshape2 r-cran-rlang r-cran-scales r-cran-stringi r-cran-stringr r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr unicode-data unzip xdg-utils zip The following packages will be upgraded: adduser apt base-files base-passwd bash blt bowtie2 bsdutils ca-certificates coreutils cython3 dash debconf debian-archive-keyring debianutils diffutils dpkg e2fsprogs findutils fontconfig-config fonts-glyphicons-halflings fonts-lyx gcc-10-base gcc-9-base gpgv grep gzip hostname init-system-helpers libacl1 libaec0 libattr1 libaudit-common libaudit1 libblas3 libblkid1 libbrotli1 libbsd0 libbz2-1.0 libc-bin libc6 libcap-ng0 libcom-err2 libcrypt1 libdebconfclient0 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libgcc-s1 libgcrypt20 libgfortran5 libgmp10 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn2-0 libimagequant0 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 liblmdb0 liblz4-1 liblzf1 liblzma5 libmd0 libmount1 libncurses6 libncursesw6 libnghttp2-14 libnsl2 libopenblas0 libopenblas0-pthread libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpcre3 libpython3-stdlib libquadmath0 librtmp1 libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libssw0 libstdc++6 libsystemd0 libsz2 libtasn1-6 libtcl8.6 libtinfo6 libtirpc-common libtk8.6 libudev1 libuuid1 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxss1 libxxhash0 libyajl2 libyaml-0-2 libzstd1 login logsave lsb-base mailcap mawk media-types mount ncbi-blast+ ncbi-data ncurses-base ncurses-bin node-d3-color node-d3-interpolate node-d3-scale-chromatic node-natural-sort node-normalize.css node-thenby nodejs openssl passwd perl perl-base procps python-matplotlib-data python3 python3-backcall python3-bibtexparser python3-biom-format python3-cachecontrol python3-certifi python3-chardet python3-click python3-colorama python3-cycler python3-dateutil python3-decorator python3-distutils python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-ijson python3-ipython python3-ipython-genutils python3-jedi python3-jinja2 python3-joblib python3-kiwisolver python3-lib2to3 python3-lockfile python3-markupsafe python3-matplotlib python3-minimal python3-msgpack python3-natsort python3-networkx python3-numpy python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pickleshare python3-pil python3-pkg-resources python3-prompt-toolkit python3-ptyprocess python3-pygments python3-pyparsing python3-requests python3-scipy python3-seaborn python3-setuptools python3-six python3-skbio python3-sklearn python3-sklearn-lib python3-threadpoolctl python3-tk python3-traitlets python3-tz python3-tzlocal python3-urllib3 python3-wcwidth python3-yaml q2-quality-control q2-taxa q2-types q2templates qiime readline-common samtools sed sensible-utils sysvinit-utils tar tk8.6-blt2.5 ttf-bitstream-vera tzdata ucf util-linux vsearch x11-common zlib1g 229 upgraded, 178 newly installed, 21 to remove and 0 not upgraded. Need to get 307 MB of archives. After this operation, 757 MB of additional disk space will be used. Get:1 http://deb.debian.org/debian sid/main amd64 base-files amd64 13.3 [72.3 kB] Get:2 http://deb.debian.org/debian sid/main amd64 libc6 amd64 2.38-13 [2775 kB] Get:3 http://deb.debian.org/debian sid/main amd64 libc-bin amd64 2.38-13 [613 kB] Get:4 http://deb.debian.org/debian sid/main amd64 gcc-14-base amd64 14.1.0-2 [44.6 kB] Get:5 http://deb.debian.org/debian sid/main amd64 libgcc-s1 amd64 14.1.0-2 [72.7 kB] Get:6 http://deb.debian.org/debian sid/main amd64 libblkid1 amd64 2.40.1-9 [166 kB] Get:7 http://deb.debian.org/debian sid/main amd64 libpcre2-8-0 amd64 10.42-4+b1 [262 kB] Get:8 http://deb.debian.org/debian sid/main amd64 libselinux1 amd64 3.5-2+b2 [74.9 kB] Get:9 http://deb.debian.org/debian sid/main amd64 libmount1 amd64 2.40.1-9 [197 kB] Get:10 http://deb.debian.org/debian sid/main amd64 libsmartcols1 amd64 2.40.1-9 [138 kB] Get:11 http://deb.debian.org/debian sid/main amd64 libuuid1 amd64 2.40.1-9 [34.9 kB] Get:12 http://deb.debian.org/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get:13 http://deb.debian.org/debian sid/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-7 [697 kB] Get:14 http://deb.debian.org/debian sid/main amd64 libaudit-common all 1:3.1.2-4 [11.5 kB] Get:15 http://deb.debian.org/debian sid/main amd64 libcap-ng0 amd64 0.8.5-1 [17.1 kB] Get:16 http://deb.debian.org/debian sid/main amd64 libaudit1 amd64 1:3.1.2-4 [48.8 kB] Get:17 http://deb.debian.org/debian sid/main amd64 perl-modules-5.38 all 5.38.2-5 [2905 kB] Get:18 http://deb.debian.org/debian sid/main amd64 libgdbm6t64 amd64 1.23-6 [72.8 kB] Get:19 http://deb.debian.org/debian sid/main amd64 libgdbm-compat4t64 amd64 1.23-6 [48.7 kB] Get:20 http://deb.debian.org/debian sid/main amd64 libperl5.38t64 amd64 5.38.2-5 [4275 kB] Get:21 http://deb.debian.org/debian sid/main amd64 perl amd64 5.38.2-5 [236 kB] Get:22 http://deb.debian.org/debian sid/main amd64 perl-base amd64 5.38.2-5 [1643 kB] Get:23 http://deb.debian.org/debian sid/main amd64 libbz2-1.0 amd64 1.0.8-5.1 [38.0 kB] Get:24 http://deb.debian.org/debian sid/main amd64 libpam0g amd64 1.5.3-7 [67.7 kB] Get:25 http://deb.debian.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.36-4 [89.8 kB] Get:26 http://deb.debian.org/debian sid/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1 [87.9 kB] Get:27 http://deb.debian.org/debian sid/main amd64 debconf all 1.5.86 [119 kB] Get:28 http://deb.debian.org/debian sid/main amd64 libcap2 amd64 1:2.66-5 [27.4 kB] Get:29 http://deb.debian.org/debian sid/main amd64 libsystemd0 amd64 256.1-2 [376 kB] Get:30 http://deb.debian.org/debian sid/main amd64 libpam-modules-bin amd64 1.5.3-7 [54.4 kB] Get:31 http://deb.debian.org/debian sid/main amd64 libpam-modules amd64 1.5.3-7 [265 kB] Get:32 http://deb.debian.org/debian sid/main amd64 libpam-runtime all 1.5.3-7 [140 kB] Get:33 http://deb.debian.org/debian sid/main amd64 libmd0 amd64 1.1.0-2 [35.8 kB] Get:34 http://deb.debian.org/debian sid/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get:35 http://deb.debian.org/debian sid/main amd64 login amd64 1:4.15.2-3 [565 kB] Get:36 http://deb.debian.org/debian sid/main amd64 util-linux amd64 2.40.1-9 [1209 kB] Get:37 http://deb.debian.org/debian sid/main amd64 liblzma5 amd64 5.6.2-1 [254 kB] Get:38 http://deb.debian.org/debian sid/main amd64 libzstd1 amd64 1.5.6+dfsg-1 [303 kB] Get:39 http://deb.debian.org/debian sid/main amd64 tar amd64 1.35+dfsg-3 [813 kB] Get:40 http://deb.debian.org/debian sid/main amd64 dpkg amd64 1.22.6 [1510 kB] Get:41 http://deb.debian.org/debian sid/main amd64 sysvinit-utils amd64 3.09-2 [32.5 kB] Get:42 http://deb.debian.org/debian sid/main amd64 lsb-base all 11.6 [4584 B] Get:43 http://deb.debian.org/debian sid/main amd64 x11-common all 1:7.7+23 [252 kB] Get:44 http://deb.debian.org/debian sid/main amd64 debianutils amd64 5.19 [89.3 kB] Get:45 http://deb.debian.org/debian sid/main amd64 bash amd64 5.2.21-2.1 [1492 kB] Get:46 http://deb.debian.org/debian sid/main amd64 bsdutils amd64 1:2.40.1-9 [104 kB] Get:47 http://deb.debian.org/debian sid/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2+b1 [559 kB] Get:48 http://deb.debian.org/debian sid/main amd64 libssl3t64 amd64 3.2.2-1 [2246 kB] Get:49 http://deb.debian.org/debian sid/main amd64 coreutils amd64 9.4-3.1 [2950 kB] Get:50 http://deb.debian.org/debian sid/main amd64 dash amd64 0.5.12-9 [93.2 kB] Get:51 http://deb.debian.org/debian sid/main amd64 diffutils amd64 1:3.10-1 [375 kB] Get:52 http://deb.debian.org/debian sid/main amd64 findutils amd64 4.10.0-2 [699 kB] Get:53 http://deb.debian.org/debian sid/main amd64 grep amd64 3.11-4 [431 kB] Get:54 http://deb.debian.org/debian sid/main amd64 gzip amd64 1.12-1.1 [133 kB] Get:55 http://deb.debian.org/debian sid/main amd64 hostname amd64 3.23+nmu2 [10.6 kB] Get:56 http://deb.debian.org/debian sid/main amd64 libncurses6 amd64 6.5-2 [104 kB] Get:57 http://deb.debian.org/debian sid/main amd64 libncursesw6 amd64 6.5-2 [135 kB] Get:58 http://deb.debian.org/debian sid/main amd64 libtinfo6 amd64 6.5-2 [344 kB] Get:59 http://deb.debian.org/debian sid/main amd64 ncurses-bin amd64 6.5-2 [433 kB] Get:60 http://deb.debian.org/debian sid/main amd64 sed amd64 4.9-2 [329 kB] Get:61 http://deb.debian.org/debian sid/main amd64 libdebconfclient0 amd64 0.272 [10.0 kB] Get:62 http://deb.debian.org/debian sid/main amd64 base-passwd amd64 3.6.3 [50.8 kB] Get:63 http://deb.debian.org/debian sid/main amd64 libgpg-error0 amd64 1.49-2 [79.9 kB] Get:64 http://deb.debian.org/debian sid/main amd64 libgcrypt20 amd64 1.10.3-3 [708 kB] Get:65 http://deb.debian.org/debian sid/main amd64 libstdc++6 amd64 14.1.0-2 [715 kB] Get:66 http://deb.debian.org/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get:67 http://deb.debian.org/debian sid/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-1 [186 kB] Get:68 http://deb.debian.org/debian sid/main amd64 libnghttp2-14 amd64 1.62.1-1 [75.5 kB] Get:69 http://deb.debian.org/debian sid/main amd64 libunistring5 amd64 1.2-1 [425 kB] Get:70 http://deb.debian.org/debian sid/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get:71 http://deb.debian.org/debian sid/main amd64 libssh2-1t64 amd64 1.11.0-5 [215 kB] Get:72 http://deb.debian.org/debian sid/main amd64 libcurl3t64-gnutls amd64 8.8.0-1 [434 kB] Get:73 http://deb.debian.org/debian sid/main amd64 libhtscodecs2 amd64 1.6.0-1+b1 [93.0 kB] Get:74 http://deb.debian.org/debian sid/main amd64 samtools amd64 1.20-3 [653 kB] Get:75 http://deb.debian.org/debian sid/main amd64 libhts3t64 amd64 1.20+ds-1 [452 kB] Get:76 http://deb.debian.org/debian sid/main amd64 libnettle8t64 amd64 3.10-1 [303 kB] Get:77 http://deb.debian.org/debian sid/main amd64 libhogweed6t64 amd64 3.10-1 [334 kB] Get:78 http://deb.debian.org/debian sid/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get:79 http://deb.debian.org/debian sid/main amd64 libp11-kit0 amd64 0.25.3-5 [417 kB] Get:80 http://deb.debian.org/debian sid/main amd64 libgnutls30t64 amd64 3.8.5-4 [1437 kB] Get:81 http://deb.debian.org/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get:82 http://deb.debian.org/debian sid/main amd64 libidn2-0 amd64 2.3.7-2 [128 kB] Get:83 http://deb.debian.org/debian sid/main amd64 libtasn1-6 amd64 4.19.0-3+b2 [48.9 kB] Get:84 http://deb.debian.org/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:85 http://deb.debian.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.21.2-1 [136 kB] Get:86 http://deb.debian.org/debian sid/main amd64 libkrb5-3 amd64 1.21.2-1 [324 kB] Get:87 http://deb.debian.org/debian sid/main amd64 libk5crypto3 amd64 1.21.2-1 [80.0 kB] Get:88 http://deb.debian.org/debian sid/main amd64 libkrb5support0 amd64 1.21.2-1 [32.2 kB] Get:89 http://deb.debian.org/debian sid/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get:90 http://deb.debian.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:91 http://deb.debian.org/debian sid/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get:92 http://deb.debian.org/debian sid/main amd64 libapt-pkg6.0t64 amd64 2.9.5 [1020 kB] Get:93 http://deb.debian.org/debian sid/main amd64 liblz4-1 amd64 1.9.4-2 [61.4 kB] Get:94 http://deb.debian.org/debian sid/main amd64 libudev1 amd64 256.1-2 [143 kB] Get:95 http://deb.debian.org/debian sid/main amd64 libxxhash0 amd64 0.8.2-2+b1 [26.6 kB] Get:96 http://deb.debian.org/debian sid/main amd64 libsemanage-common all 3.5-1 [9908 B] Get:97 http://deb.debian.org/debian sid/main amd64 libsepol2 amd64 3.5-2+b1 [278 kB] Get:98 http://deb.debian.org/debian sid/main amd64 libsemanage2 amd64 3.5-1+b3 [90.3 kB] Get:99 http://deb.debian.org/debian sid/main amd64 passwd amd64 1:4.15.2-3 [994 kB] Get:100 http://deb.debian.org/debian sid/main amd64 libacl1 amd64 2.3.2-2 [32.4 kB] Get:101 http://deb.debian.org/debian sid/main amd64 libattr1 amd64 1:2.5.2-1 [22.5 kB] Get:102 http://deb.debian.org/debian sid/main amd64 adduser all 3.137 [140 kB] Get:103 http://deb.debian.org/debian sid/main amd64 gpgv amd64 2.2.43-7 [216 kB] Get:104 http://deb.debian.org/debian sid/main amd64 debian-archive-keyring all 2023.4 [161 kB] Get:105 http://deb.debian.org/debian sid/main amd64 libseccomp2 amd64 2.5.5-1 [47.0 kB] Get:106 http://deb.debian.org/debian sid/main amd64 apt amd64 2.9.5 [1398 kB] Get:107 http://deb.debian.org/debian sid/main amd64 init-system-helpers all 1.66 [39.0 kB] Get:108 http://deb.debian.org/debian sid/main amd64 ncurses-base all 6.5-2 [270 kB] Get:109 http://deb.debian.org/debian sid/main amd64 node-normalize.css all 8.0.1-5 [12.7 kB] Get:110 http://deb.debian.org/debian sid/main amd64 nodejs amd64 20.15.0+dfsg-1 [344 kB] Get:111 http://deb.debian.org/debian sid/main amd64 libcares2 amd64 1.31.0-1 [74.4 kB] Get:112 http://deb.debian.org/debian sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:113 http://deb.debian.org/debian sid/main amd64 libuv1t64 amd64 1.48.0-5 [148 kB] Get:114 http://deb.debian.org/debian sid/main amd64 node-xtend all 4.0.2-3 [3932 B] Get:115 http://deb.debian.org/debian sid/main amd64 node-acorn all 8.8.1+ds+~cs25.17.7-2 [128 kB] Get:116 http://deb.debian.org/debian sid/main amd64 node-cjs-module-lexer all 1.2.3+dfsg-1 [30.6 kB] Get:117 http://deb.debian.org/debian sid/main amd64 node-undici all 5.28.4+dfsg1+~cs23.12.11-2 [314 kB] Get:118 http://deb.debian.org/debian sid/main amd64 libnode115 amd64 20.15.0+dfsg-1 [11.8 MB] Get:119 http://deb.debian.org/debian sid/main amd64 logsave amd64 1.47.1-1 [22.7 kB] Get:120 http://deb.debian.org/debian sid/main amd64 libext2fs2t64 amd64 1.47.1-1 [210 kB] Get:121 http://deb.debian.org/debian sid/main amd64 e2fsprogs amd64 1.47.1-1 [583 kB] Get:122 http://deb.debian.org/debian sid/main amd64 libcurl4t64 amd64 8.8.0-1 [441 kB] Get:123 http://deb.debian.org/debian sid/main amd64 libaec0 amd64 1.1.3-1 [23.4 kB] Get:124 http://deb.debian.org/debian sid/main amd64 libsz2 amd64 1.1.3-1 [7740 B] Get:125 http://deb.debian.org/debian sid/main amd64 python3-h5py-serial amd64 3.11.0-2 [1631 kB] Get:126 http://deb.debian.org/debian sid/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.3 [1241 kB] Get:127 http://deb.debian.org/debian sid/main amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.3 [63.3 kB] Get:128 http://deb.debian.org/debian sid/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get:129 http://deb.debian.org/debian sid/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get:130 http://deb.debian.org/debian sid/main amd64 readline-common all 8.2-4 [69.3 kB] Get:131 http://deb.debian.org/debian sid/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get:132 http://deb.debian.org/debian sid/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get:133 http://deb.debian.org/debian sid/main amd64 libnsl2 amd64 1.3.0-3+b2 [40.3 kB] Get:134 http://deb.debian.org/debian sid/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB] Get:135 http://deb.debian.org/debian sid/main amd64 mount amd64 2.40.1-9 [150 kB] Get:136 http://deb.debian.org/debian sid/main amd64 libpython3.12-minimal amd64 3.12.4-1 [811 kB] Get:137 http://deb.debian.org/debian sid/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:138 http://deb.debian.org/debian sid/main amd64 python3.12-minimal amd64 3.12.4-1 [2136 kB] Get:139 http://deb.debian.org/debian sid/main amd64 python3-yaml amd64 6.0.1-2 [177 kB] Get:140 http://deb.debian.org/debian sid/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [586 kB] Get:141 http://deb.debian.org/debian sid/main amd64 blt amd64 2.5.3+dfsg-7 [6024 B] Get:142 http://deb.debian.org/debian sid/main amd64 python3-tk amd64 3.12.3-3.1 [113 kB] Get:143 http://deb.debian.org/debian sid/main amd64 python3-sklearn-lib amd64 1.4.2+dfsg-3 [6603 kB] Get:144 http://deb.debian.org/debian sid/main amd64 python3-biom-format amd64 2.1.16-1 [187 kB] Get:145 http://deb.debian.org/debian sid/main amd64 python3-seaborn all 0.13.2-3 [215 kB] Get:146 http://deb.debian.org/debian sid/main amd64 q2-quality-control all 2024.5.0-1 [729 kB] Get:147 http://deb.debian.org/debian sid/main amd64 q2-taxa all 2024.5.0+dfsg-1 [39.0 kB] Get:148 http://deb.debian.org/debian sid/main amd64 q2-types all 2024.5.0-1 [5531 kB] Get:149 http://deb.debian.org/debian sid/main amd64 q2templates all 2024.5.0+ds-1 [12.9 kB] Get:150 http://deb.debian.org/debian sid/main amd64 python3-skbio amd64 0.5.9-4 [875 kB] Get:151 http://deb.debian.org/debian sid/main amd64 python3-pandas all 2.1.4+dfsg-8 [3015 kB] Get:152 http://deb.debian.org/debian sid/main amd64 python3-scipy amd64 1.12.0-2 [21.0 MB] Get:153 http://deb.debian.org/debian sid/main amd64 python3-pil amd64 10.3.0-2 [564 kB] Get:154 http://deb.debian.org/debian sid/main amd64 python3-pandas-lib amd64 2.1.4+dfsg-8 [7882 kB] Get:155 http://deb.debian.org/debian sid/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [5465 kB] Get:156 http://deb.debian.org/debian sid/main amd64 python3-msgpack amd64 1.0.3-3+b1 [96.5 kB] Get:157 http://deb.debian.org/debian sid/main amd64 python3-matplotlib amd64 3.6.3-2 [8167 kB] Get:158 http://deb.debian.org/debian sid/main amd64 python3-markupsafe amd64 2.1.5-1 [14.5 kB] Get:159 http://deb.debian.org/debian sid/main amd64 python3-kiwisolver amd64 1.4.5-1 [80.7 kB] Get:160 http://deb.debian.org/debian sid/main amd64 python3-ijson amd64 3.3.0-1+b1 [40.7 kB] Get:161 http://deb.debian.org/debian sid/main amd64 python3-hdmedians amd64 0.14.2-5.1 [170 kB] Get:162 http://deb.debian.org/debian sid/main amd64 cython3 amd64 3.0.10+dfsg-5 [3571 kB] Get:163 http://deb.debian.org/debian sid/main amd64 python3-distutils all 3.12.3-3.1 [131 kB] Get:164 http://deb.debian.org/debian sid/main amd64 python3-lib2to3 all 3.12.3-3.1 [77.7 kB] Get:165 http://deb.debian.org/debian sid/main amd64 python3-minimal amd64 3.12.2-1 [26.5 kB] Get:166 http://deb.debian.org/debian sid/main amd64 python3 amd64 3.12.2-1 [27.5 kB] Get:167 http://deb.debian.org/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1+b1 [52.6 kB] Get:168 http://deb.debian.org/debian sid/main amd64 tzdata all 2024a-4 [255 kB] Get:169 http://deb.debian.org/debian sid/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1 [1034 kB] Get:170 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:171 http://deb.debian.org/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:172 http://deb.debian.org/debian sid/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get:173 http://deb.debian.org/debian sid/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get:174 http://deb.debian.org/debian sid/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:175 http://deb.debian.org/debian sid/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get:176 http://deb.debian.org/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get:177 http://deb.debian.org/debian sid/main amd64 libxcb1 amd64 1.17.0-2 [144 kB] Get:178 http://deb.debian.org/debian sid/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get:179 http://deb.debian.org/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get:180 http://deb.debian.org/debian sid/main amd64 libxft2 amd64 2.3.6-1+b1 [54.2 kB] Get:181 http://deb.debian.org/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:182 http://deb.debian.org/debian sid/main amd64 libxss1 amd64 1:1.2.3-1+b1 [17.0 kB] Get:183 http://deb.debian.org/debian sid/main amd64 libtk8.6 amd64 8.6.14-1 [784 kB] Get:184 http://deb.debian.org/debian sid/main amd64 libgomp1 amd64 14.1.0-2 [136 kB] Get:185 http://deb.debian.org/debian sid/main amd64 libgfortran5 amd64 14.1.0-2 [837 kB] Get:186 http://deb.debian.org/debian sid/main amd64 libopenblas0-pthread amd64 0.3.27+ds-2 [6813 kB] Get:187 http://deb.debian.org/debian sid/main amd64 libopenblas0 amd64 0.3.27+ds-2 [39.0 kB] Get:188 http://deb.debian.org/debian sid/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get:189 http://deb.debian.org/debian sid/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get:190 http://deb.debian.org/debian sid/main amd64 python3-setuptools all 68.1.2-2 [468 kB] Get:191 http://deb.debian.org/debian sid/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get:192 http://deb.debian.org/debian sid/main amd64 liblzf1 amd64 3.6-4+b1 [10.4 kB] Get:193 http://deb.debian.org/debian sid/main amd64 python3-h5py all 3.11.0-2 [14.5 kB] Get:194 http://deb.debian.org/debian sid/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get:195 http://deb.debian.org/debian sid/main amd64 python3-click all 8.1.7-1 [94.0 kB] Get:196 http://deb.debian.org/debian sid/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get:197 http://deb.debian.org/debian sid/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b1 [29.1 kB] Get:198 http://deb.debian.org/debian sid/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:199 http://deb.debian.org/debian sid/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get:200 http://deb.debian.org/debian sid/main amd64 fonts-lyx all 2.4.0-1 [189 kB] Get:201 http://deb.debian.org/debian sid/main amd64 python-matplotlib-data all 3.6.3-2 [2744 kB] Get:202 http://deb.debian.org/debian sid/main amd64 python3-six all 1.16.0-6 [16.3 kB] Get:203 http://deb.debian.org/debian sid/main amd64 python3-dateutil all 2.9.0-2 [79.4 kB] Get:204 http://deb.debian.org/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:205 http://deb.debian.org/debian sid/main amd64 libimagequant0 amd64 2.18.0-1+b1 [35.3 kB] Get:206 http://deb.debian.org/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get:207 http://deb.debian.org/debian sid/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get:208 http://deb.debian.org/debian sid/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get:209 http://deb.debian.org/debian sid/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get:210 http://deb.debian.org/debian sid/main amd64 libglib2.0-0t64 amd64 2.80.3-1 [1485 kB] Get:211 http://deb.debian.org/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get:212 http://deb.debian.org/debian sid/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get:213 http://deb.debian.org/debian sid/main amd64 libraqm0 amd64 0.10.1-1+b1 [14.2 kB] Get:214 http://deb.debian.org/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get:215 http://deb.debian.org/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get:216 http://deb.debian.org/debian sid/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [113 kB] Get:217 http://deb.debian.org/debian sid/main amd64 libwebp7 amd64 1.4.0-0.1 [311 kB] Get:218 http://deb.debian.org/debian sid/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get:219 http://deb.debian.org/debian sid/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [110 kB] Get:220 http://deb.debian.org/debian sid/main amd64 libwebpmux3 amd64 1.4.0-0.1 [123 kB] Get:221 http://deb.debian.org/debian sid/main amd64 python3-pil.imagetk amd64 10.3.0-2 [79.5 kB] Get:222 http://deb.debian.org/debian sid/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get:223 http://deb.debian.org/debian sid/main amd64 python3-contourpy amd64 1.0.7-3 [285 kB] Get:224 http://deb.debian.org/debian sid/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get:225 http://deb.debian.org/debian sid/main amd64 python3-brotli amd64 1.1.0-2+b3 [312 kB] Get:226 http://deb.debian.org/debian sid/main amd64 python3-attr all 23.2.0-2 [65.5 kB] Get:227 http://deb.debian.org/debian sid/main amd64 python3-typing-extensions all 4.12.2-1 [72.9 kB] Get:228 http://deb.debian.org/debian sid/main amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get:229 http://deb.debian.org/debian sid/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get:230 http://deb.debian.org/debian sid/main amd64 python3-sympy all 1.12.1-1 [3869 kB] Get:231 http://deb.debian.org/debian sid/main amd64 python3-tz all 2024.1-2 [30.9 kB] Get:232 http://deb.debian.org/debian sid/main amd64 python3-appdirs all 1.4.4-4 [12.5 kB] Get:233 http://deb.debian.org/debian sid/main amd64 python3-fs all 2.4.16-4 [95.4 kB] Get:234 http://deb.debian.org/debian sid/main amd64 libxml2 amd64 2.12.7+dfsg-3 [670 kB] Get:235 http://deb.debian.org/debian sid/main amd64 libxslt1.1 amd64 1.1.35-1+b1 [232 kB] Get:236 http://deb.debian.org/debian sid/main amd64 python3-lxml amd64 5.2.1-1 [1995 kB] Get:237 http://deb.debian.org/debian sid/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b3 [25.5 kB] Get:238 http://deb.debian.org/debian sid/main amd64 python3-unicodedata2 amd64 15.1.0+ds-1+b1 [299 kB] Get:239 http://deb.debian.org/debian sid/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get:240 http://deb.debian.org/debian sid/main amd64 python3-fonttools amd64 4.46.0-1 [1623 kB] Get:241 http://deb.debian.org/debian sid/main amd64 python3-packaging all 24.0-1 [45.5 kB] Get:242 http://deb.debian.org/debian sid/main amd64 libqhull-r8.0 amd64 2020.2-6+b1 [245 kB] Get:243 http://deb.debian.org/debian sid/main amd64 python3-platformdirs all 4.2.1-1 [16.0 kB] Get:244 http://deb.debian.org/debian sid/main amd64 python3-bibtexparser all 2.0.0b5+really1.4.1-1 [34.2 kB] Get:245 http://deb.debian.org/debian sid/main amd64 python3-dill all 0.3.8-1 [81.7 kB] Get:246 http://deb.debian.org/debian sid/main amd64 python3-filelock all 3.14.0-1 [10.9 kB] Get:247 http://deb.debian.org/debian sid/main amd64 python3-cffi-backend amd64 1.16.0-2+b2 [112 kB] Get:248 http://deb.debian.org/debian sid/main amd64 python3-cryptography amd64 42.0.5-2 [1186 kB] Get:249 http://deb.debian.org/debian sid/main amd64 python3-jwt all 2.7.0-1 [29.7 kB] Get:250 http://deb.debian.org/debian sid/main amd64 openssl amd64 3.2.2-1 [1364 kB] Get:251 http://deb.debian.org/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:252 http://deb.debian.org/debian sid/main amd64 python3-certifi all 2024.6.2-1 [157 kB] Get:253 http://deb.debian.org/debian sid/main amd64 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get:254 http://deb.debian.org/debian sid/main amd64 python3-idna all 3.6-2.1 [38.6 kB] Get:255 http://deb.debian.org/debian sid/main amd64 python3-urllib3 all 2.0.7-2 [111 kB] Get:256 http://deb.debian.org/debian sid/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:257 http://deb.debian.org/debian sid/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get:258 http://deb.debian.org/debian sid/main amd64 python3-globus-sdk all 3.41.0-1 [247 kB] Get:259 http://deb.debian.org/debian sid/main amd64 python3-bcrypt amd64 3.2.2-1 [32.2 kB] Get:260 http://deb.debian.org/debian sid/main amd64 libsodium23 amd64 1.0.18-1+b1 [163 kB] Get:261 http://deb.debian.org/debian sid/main amd64 python3-nacl amd64 1.5.0-4 [56.5 kB] Get:262 http://deb.debian.org/debian sid/main amd64 python3-paramiko all 3.4.0-1 [142 kB] Get:263 http://deb.debian.org/debian sid/main amd64 python3-psutil amd64 5.9.8-2 [225 kB] Get:264 http://deb.debian.org/debian sid/main amd64 python3-setproctitle amd64 1.3.3-1+b2 [19.5 kB] Get:265 http://deb.debian.org/debian sid/main amd64 python3-tblib all 3.0.0-5 [13.7 kB] Get:266 http://deb.debian.org/debian sid/main amd64 python3-typeguard all 4.1.5-1 [35.0 kB] Get:267 http://deb.debian.org/debian sid/main amd64 python3-py all 1.11.0-2 [88.7 kB] Get:268 http://deb.debian.org/debian sid/main amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1 [221 kB] Get:269 http://deb.debian.org/debian sid/main amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1 [161 kB] Get:270 http://deb.debian.org/debian sid/main amd64 libzmq5 amd64 4.3.5-1+b2 [281 kB] Get:271 http://deb.debian.org/debian sid/main amd64 python3-zmq amd64 24.0.1-5+b1 [356 kB] Get:272 http://deb.debian.org/debian sid/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get:273 http://deb.debian.org/debian sid/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get:274 http://deb.debian.org/debian sid/main amd64 javascript-common all 11+nmu1 [6260 B] Get:275 http://deb.debian.org/debian sid/main amd64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get:276 http://deb.debian.org/debian sid/main amd64 node-fortawesome-fontawesome-free all 6.4.2+ds1-1 [1472 kB] Get:277 http://deb.debian.org/debian sid/main amd64 python3-blinker all 1.8.2-1 [13.1 kB] Get:278 http://deb.debian.org/debian sid/main amd64 python3-itsdangerous all 2.2.0-1 [18.0 kB] Get:279 http://deb.debian.org/debian sid/main amd64 python3-jinja2 all 3.1.3-1 [119 kB] Get:280 http://deb.debian.org/debian sid/main amd64 python3-werkzeug all 3.0.3-1 [207 kB] Get:281 http://deb.debian.org/debian sid/main amd64 python3-flask all 3.0.3-1 [104 kB] Get:282 http://deb.debian.org/debian sid/main amd64 python3-greenlet amd64 3.0.1-3 [177 kB] Get:283 http://deb.debian.org/debian sid/main amd64 python3-sqlalchemy all 2.0.30+ds1-3 [1193 kB] Get:284 http://deb.debian.org/debian sid/main amd64 python3-flask-sqlalchemy all 3.1.1-2 [35.9 kB] Get:285 http://deb.debian.org/debian sid/main amd64 python3-parsl all 2024.05.27+ds-1 [278 kB] Get:286 http://deb.debian.org/debian sid/main amd64 python3-tomlkit all 0.12.5-1 [42.0 kB] Get:287 http://deb.debian.org/debian sid/main amd64 python3-tzlocal all 5.2-1.1 [23.7 kB] Get:288 http://deb.debian.org/debian sid/main amd64 python3-networkx all 3.2.1-4 [14.2 MB] Get:289 http://deb.debian.org/debian sid/main amd64 python3-public all 4.1.0-1 [6960 B] Get:290 http://deb.debian.org/debian sid/main amd64 python3-flufl.lock all 8.1.0-1 [15.5 kB] Get:291 http://deb.debian.org/debian sid/main amd64 qiime all 2024.5.0-1 [304 kB] Get:292 http://deb.debian.org/debian sid/main amd64 libyajl2 amd64 2.1.0-5+b1 [23.3 kB] Get:293 http://deb.debian.org/debian sid/main amd64 node-d3-color all 1.4.1+~1.4.2-1 [19.1 kB] Get:294 http://deb.debian.org/debian sid/main amd64 node-d3-interpolate all 1.4.0+~1.4.2-1 [23.3 kB] Get:295 http://deb.debian.org/debian sid/main amd64 node-d3-scale-chromatic all 1.5.0+~1.5.1-1 [21.4 kB] Get:296 http://deb.debian.org/debian sid/main amd64 node-natural-sort all 1.0.0-5 [4296 B] Get:297 http://deb.debian.org/debian sid/main amd64 node-thenby all 1.3.4+git20200720.0fd165a+ds-5 [5084 B] Get:298 http://deb.debian.org/debian sid/main amd64 zip amd64 3.0-13 [230 kB] Get:299 http://deb.debian.org/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:300 http://deb.debian.org/debian sid/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:301 http://deb.debian.org/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:302 http://deb.debian.org/debian sid/main amd64 libpaper1 amd64 1.1.29+b1 [12.9 kB] Get:303 http://deb.debian.org/debian sid/main amd64 libpaper-utils amd64 1.1.29+b1 [9176 B] Get:304 http://deb.debian.org/debian sid/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get:305 http://deb.debian.org/debian sid/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get:306 http://deb.debian.org/debian sid/main amd64 libxcb-render0 amd64 1.17.0-2 [115 kB] Get:307 http://deb.debian.org/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-2 [105 kB] Get:308 http://deb.debian.org/debian sid/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB] Get:309 http://deb.debian.org/debian sid/main amd64 fontconfig amd64 2.15.0-1.1 [463 kB] Get:310 http://deb.debian.org/debian sid/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:311 http://deb.debian.org/debian sid/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB] Get:312 http://deb.debian.org/debian sid/main amd64 libthai0 amd64 0.1.29-2 [49.1 kB] Get:313 http://deb.debian.org/debian sid/main amd64 libpango-1.0-0 amd64 1.54.0+ds-1 [219 kB] Get:314 http://deb.debian.org/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-1 [48.0 kB] Get:315 http://deb.debian.org/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-1 [35.0 kB] Get:316 http://deb.debian.org/debian sid/main amd64 libice6 amd64 2:1.0.10-1+b1 [56.7 kB] Get:317 http://deb.debian.org/debian sid/main amd64 libsm6 amd64 2:1.2.3-1+b1 [33.6 kB] Get:318 http://deb.debian.org/debian sid/main amd64 libxt6t64 amd64 1:1.2.1-1.2 [187 kB] Get:319 http://deb.debian.org/debian sid/main amd64 r-base-core amd64 4.4.1-1 [28.3 MB] Get:320 http://deb.debian.org/debian sid/main amd64 r-bioc-biocgenerics all 0.48.1-2 [597 kB] Get:321 http://deb.debian.org/debian sid/main amd64 r-cran-cli amd64 3.6.2-1 [1325 kB] Get:322 http://deb.debian.org/debian sid/main amd64 r-cran-glue amd64 1.7.0-1 [157 kB] Get:323 http://deb.debian.org/debian sid/main amd64 r-cran-rlang amd64 1.1.4-1 [1712 kB] Get:324 http://deb.debian.org/debian sid/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get:325 http://deb.debian.org/debian sid/main amd64 r-cran-gtable all 0.3.5+dfsg-1 [222 kB] Get:326 http://deb.debian.org/debian sid/main amd64 r-cran-isoband amd64 0.2.7-1 [1614 kB] Get:327 http://deb.debian.org/debian sid/main amd64 r-cran-mass amd64 7.3-61-1 [1112 kB] Get:328 http://deb.debian.org/debian sid/main amd64 r-cran-lattice amd64 0.22-6-1 [1392 kB] Get:329 http://deb.debian.org/debian sid/main amd64 r-cran-nlme amd64 3.1.165-1 [2325 kB] Get:330 http://deb.debian.org/debian sid/main amd64 r-cran-matrix amd64 1.7-0-3 [4127 kB] Get:331 http://deb.debian.org/debian sid/main amd64 r-cran-mgcv amd64 1.9-1-1 [3233 kB] Get:332 http://deb.debian.org/debian sid/main amd64 r-cran-farver amd64 2.1.2-1 [1411 kB] Get:333 http://deb.debian.org/debian sid/main amd64 r-cran-labeling all 0.4.3-1 [62.4 kB] Get:334 http://deb.debian.org/debian sid/main amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1692 kB] Get:335 http://deb.debian.org/debian sid/main amd64 r-cran-munsell all 0.5.1-1 [237 kB] Get:336 http://deb.debian.org/debian sid/main amd64 r-cran-r6 all 2.5.1-1 [105 kB] Get:337 http://deb.debian.org/debian sid/main amd64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get:338 http://deb.debian.org/debian sid/main amd64 r-cran-viridislite all 0.4.2-2 [1299 kB] Get:339 http://deb.debian.org/debian sid/main amd64 r-cran-scales all 1.3.0-1 [677 kB] Get:340 http://deb.debian.org/debian sid/main amd64 r-cran-fansi amd64 1.0.5-1 [621 kB] Get:341 http://deb.debian.org/debian sid/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB] Get:342 http://deb.debian.org/debian sid/main amd64 r-cran-utf8 amd64 1.2.4-1 [133 kB] Get:343 http://deb.debian.org/debian sid/main amd64 r-cran-vctrs amd64 0.6.5-1 [1375 kB] Get:344 http://deb.debian.org/debian sid/main amd64 r-cran-pillar all 1.9.0+dfsg-1 [463 kB] Get:345 http://deb.debian.org/debian sid/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get:346 http://deb.debian.org/debian sid/main amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [420 kB] Get:347 http://deb.debian.org/debian sid/main amd64 r-cran-withr all 3.0.0+dfsg-1 [240 kB] Get:348 http://deb.debian.org/debian sid/main amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3933 kB] Get:349 http://deb.debian.org/debian sid/main amd64 r-cran-littler amd64 0.3.20-1 [102 kB] Get:350 http://deb.debian.org/debian sid/main amd64 littler all 0.3.20-1 [16.0 kB] Get:351 http://deb.debian.org/debian sid/main amd64 r-cran-pkgkitten all 0.2.3-1 [26.7 kB] Get:352 http://deb.debian.org/debian sid/main amd64 r-cran-rcpp amd64 1.0.12-1 [2071 kB] Get:353 http://deb.debian.org/debian sid/main amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] Get:354 http://deb.debian.org/debian sid/main amd64 r-cran-stringi amd64 1.8.3-1 [861 kB] Get:355 http://deb.debian.org/debian sid/main amd64 r-cran-stringr all 1.5.1-1 [296 kB] Get:356 http://deb.debian.org/debian sid/main amd64 r-cran-reshape2 amd64 1.4.4-2 [114 kB] Get:357 http://deb.debian.org/debian sid/main amd64 r-bioc-decontam all 1.22.0+dfsg-2 [209 kB] Get:358 http://deb.debian.org/debian sid/main amd64 r-cran-getopt all 1.20.4-1 [38.6 kB] Get:359 http://deb.debian.org/debian sid/main amd64 r-cran-optparse all 1.7.4-1 [81.8 kB] Get:360 http://deb.debian.org/debian sid/main amd64 bowtie2 amd64 2.5.3-1 [1438 kB] Get:361 http://deb.debian.org/debian sid/main amd64 ncbi-data all 6.1.20170106+dfsg2-2 [3544 kB] Get:362 http://deb.debian.org/debian sid/main amd64 liblmdb0 amd64 0.9.31-1+b1 [44.8 kB] Get:363 http://deb.debian.org/debian sid/main amd64 libmbedcrypto7t64 amd64 2.28.8-1 [284 kB] Get:364 http://deb.debian.org/debian sid/main amd64 libmbedx509-1t64 amd64 2.28.8-1 [131 kB] Get:365 http://deb.debian.org/debian sid/main amd64 libmbedtls14t64 amd64 2.28.8-1 [167 kB] Get:366 http://deb.debian.org/debian sid/main amd64 ncbi-blast+ amd64 2.12.0+ds-4+b1 [12.5 MB] Get:367 http://deb.debian.org/debian sid/main amd64 vsearch amd64 2.28.1-2 [403 kB] Get:368 http://deb.debian.org/debian sid/main amd64 libssw0 amd64 1.1-14+b1 [21.2 kB] Get:369 http://deb.debian.org/debian sid/main amd64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get:370 http://deb.debian.org/debian sid/main amd64 python3-prompt-toolkit all 3.0.47-1 [277 kB] Get:371 http://deb.debian.org/debian sid/main amd64 python3-parso all 0.8.3-1 [67.4 kB] Get:372 http://deb.debian.org/debian sid/main amd64 python3-typeshed all 0.0~git20231111.6764465-3 [1258 kB] Get:373 http://deb.debian.org/debian sid/main amd64 python3-jedi all 0.19.1+ds1-1 [691 kB] Get:374 http://deb.debian.org/debian sid/main amd64 python3-traitlets all 5.14.3-1 [70.7 kB] Get:375 http://deb.debian.org/debian sid/main amd64 python3-matplotlib-inline all 0.1.6-2 [8652 B] Get:376 http://deb.debian.org/debian sid/main amd64 python3-ptyprocess all 0.7.0-5 [14.7 kB] Get:377 http://deb.debian.org/debian sid/main amd64 python3-pexpect all 4.9-2 [55.5 kB] Get:378 http://deb.debian.org/debian sid/main amd64 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get:379 http://deb.debian.org/debian sid/main amd64 python3-asttokens all 2.4.1-1 [20.6 kB] Get:380 http://deb.debian.org/debian sid/main amd64 python3-executing all 2.0.1-0.1 [22.7 kB] Get:381 http://deb.debian.org/debian sid/main amd64 python3-pure-eval all 0.2.2-2 [11.0 kB] Get:382 http://deb.debian.org/debian sid/main amd64 python3-stack-data all 0.6.3-1 [21.6 kB] Get:383 http://deb.debian.org/debian sid/main amd64 python3-ipython all 8.20.0-1 [556 kB] Get:384 http://deb.debian.org/debian sid/main amd64 python3-natsort all 8.0.2-2 [39.0 kB] Get:385 http://deb.debian.org/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:386 http://deb.debian.org/debian sid/main amd64 libsqlite3-0 amd64 3.46.0-1 [902 kB] Get:387 http://deb.debian.org/debian sid/main amd64 libpython3.12-stdlib amd64 3.12.4-1 [1948 kB] Get:388 http://deb.debian.org/debian sid/main amd64 python3.12 amd64 3.12.4-1 [664 kB] Get:389 http://deb.debian.org/debian sid/main amd64 libpython3-stdlib amd64 3.12.2-1 [9432 B] Get:390 http://deb.debian.org/debian sid/main amd64 libpcre3 amd64 2:8.39-15+b1 [342 kB] Get:391 http://deb.debian.org/debian sid/main amd64 mawk amd64 1.3.4.20240622-1 [136 kB] Get:392 http://deb.debian.org/debian sid/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get:393 http://deb.debian.org/debian sid/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get:394 http://deb.debian.org/debian sid/main amd64 libquadmath0 amd64 14.1.0-2 [145 kB] Get:395 http://deb.debian.org/debian sid/main amd64 gcc-10-base amd64 10.5.0-4 [36.7 kB] Get:396 http://deb.debian.org/debian sid/main amd64 gcc-9-base amd64 9.5.0-6+b1 [29.2 kB] Get:397 http://deb.debian.org/debian sid/main amd64 libss2 amd64 1.47.1-1 [27.6 kB] Get:398 http://deb.debian.org/debian sid/main amd64 mailcap all 3.72 [32.6 kB] Get:399 http://deb.debian.org/debian sid/main amd64 python3-backcall all 0.2.0-4 [12.1 kB] Get:400 http://deb.debian.org/debian sid/main amd64 python3-cachecontrol all 0.14.0-1 [18.6 kB] Get:401 http://deb.debian.org/debian sid/main amd64 python3-ipython-genutils all 0.2.0-6 [21.6 kB] Get:402 http://deb.debian.org/debian sid/main amd64 python3-joblib all 1.3.2-2 [218 kB] Get:403 http://deb.debian.org/debian sid/main amd64 python3-lockfile all 1:0.12.2-3 [15.7 kB] Get:404 http://deb.debian.org/debian sid/main amd64 python3-pickleshare all 0.7.5-5 [7600 B] Get:405 http://deb.debian.org/debian sid/main amd64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get:406 http://deb.debian.org/debian sid/main amd64 python3-sklearn all 1.4.2+dfsg-3 [2247 kB] Get:407 http://deb.debian.org/debian sid/main amd64 ttf-bitstream-vera all 1.10-8.2 [223 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 307 MB in 14s (22.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23136 files and directories currently installed.) Preparing to unpack .../base-files_13.3_amd64.deb ... Unpacking base-files (13.3) over (11.1+deb11u9) ... Setting up base-files (13.3) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Updating /etc/profile to current default. (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23142 files and directories currently installed.) Preparing to unpack .../libmount1_2.40.1-9_amd64.deb ... Unpacking libmount1:amd64 (2.40.1-9) over (2.36.1-8+deb11u1) ... Setting up libmount1:amd64 (2.40.1-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23144 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.40.1-9_amd64.deb ... Unpacking libsmartcols1:amd64 (2.40.1-9) over (2.36.1-8+deb11u1) ... Setting up libsmartcols1:amd64 (2.40.1-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23146 files and directories currently installed.) Preparing to unpack .../libuuid1_2.40.1-9_amd64.deb ... Unpacking libuuid1:amd64 (2.40.1-9) over (2.36.1-8+deb11u1) ... Setting up libuuid1:amd64 (2.40.1-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23147 files and directories currently installed.) Preparing to unpack .../libsasl2-modules-db_2.1.28+dfsg1-6_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) over (2.1.27+dfsg-2.1+deb11u1) ... dpkg: libdb5.3:amd64: dependency problems, but removing anyway as you requested: libpython3.9-stdlib:amd64 depends on libdb5.3. libperl5.32:amd64 depends on libdb5.3. libpam-modules:amd64 depends on libdb5.3. (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23139 files and directories currently installed.) Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-7_amd64.deb ... Unpacking libdb5.3t64:amd64 (5.3.28+dfsg2-7) ... Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23145 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a3.1.2-4_all.deb ... Unpacking libaudit-common (1:3.1.2-4) over (1:3.0-2) ... Setting up libaudit-common (1:3.1.2-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23145 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.5-1_amd64.deb ... Unpacking libcap-ng0:amd64 (0.8.5-1) over (0.7.9-2.2+b1) ... Setting up libcap-ng0:amd64 (0.8.5-1) ... (Reading database ... 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Unpacking perl-modules-5.38 (5.38.2-5) ... dpkg: libgdbm6:amd64: dependency problems, but removing anyway as you requested: libperl5.32:amd64 depends on libgdbm6 (>= 1.18-3). libgdbm-compat4:amd64 depends on libgdbm6 (>= 1.16). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24559 files and directories currently installed.) Removing libgdbm6:amd64 (1.19-2) ... Selecting previously unselected package libgdbm6t64:amd64. (Reading database ... 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Setting up perl-base (5.38.2-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25090 files and directories currently installed.) Preparing to unpack .../libbz2-1.0_1.0.8-5.1_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.8-5.1) over (1.0.8-4) ... Setting up libbz2-1.0:amd64 (1.0.8-5.1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25089 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.3.dfsg+really1.3.1-1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.3.dfsg+really1.3.1-1) over (1:1.2.11.dfsg-2+deb11u2) ... Setting up zlib1g:amd64 (1:1.3.dfsg+really1.3.1-1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25102 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.3-7_amd64.deb ... Unpacking libpam-modules:amd64 (1.5.3-7) over (1.4.0-9+deb11u1) ... dpkg: warning: unable to delete old directory '/lib/x86_64-linux-gnu/security': Directory not empty Setting up libpam-modules:amd64 (1.5.3-7) ... Installing new version of config file /etc/security/limits.conf ... Installing new version of config file /etc/security/namespace.init ... Installing new version of config file /etc/security/sepermit.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25103 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.5.3-7_all.deb ... Unpacking libpam-runtime (1.5.3-7) over (1.4.0-9+deb11u1) ... Setting up libpam-runtime (1.5.3-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25102 files and directories currently installed.) Preparing to unpack .../libmd0_1.1.0-2_amd64.deb ... Unpacking libmd0:amd64 (1.1.0-2) over (1.0.3-3) ... Setting up libmd0:amd64 (1.1.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25102 files and directories currently installed.) Preparing to unpack .../libbsd0_0.12.2-1_amd64.deb ... Unpacking libbsd0:amd64 (0.12.2-1) over (0.11.3-1+deb11u1) ... Setting up libbsd0:amd64 (0.12.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25103 files and directories currently installed.) Preparing to unpack .../login_1%3a4.15.2-3_amd64.deb ... Unpacking login (1:4.15.2-3) over (1:4.8.1-1) ... Setting up login (1:4.15.2-3) ... Installing new version of config file /etc/login.defs ... Installing new version of config file /etc/pam.d/login ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25075 files and directories currently installed.) Preparing to unpack .../util-linux_2.40.1-9_amd64.deb ... Unpacking util-linux (2.40.1-9) over (2.36.1-8+deb11u1) ... dpkg: warning: unable to delete old directory '/usr/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/usr/lib/udev': Directory not empty Setting up util-linux (2.40.1-9) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25038 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.6+dfsg-1_amd64.deb ... Unpacking libzstd1:amd64 (1.5.6+dfsg-1) over (1.4.8+dfsg-2.1) ... Setting up libzstd1:amd64 (1.5.6+dfsg-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25038 files and directories currently installed.) Preparing to unpack .../tar_1.35+dfsg-3_amd64.deb ... Unpacking tar (1.35+dfsg-3) over (1.34+dfsg-1+deb11u1) ... Setting up tar (1.35+dfsg-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25039 files and directories currently installed.) Preparing to unpack .../archives/dpkg_1.22.6_amd64.deb ... Unpacking dpkg (1.22.6) over (1.20.13) ... Setting up dpkg (1.22.6) ... Installing new version of config file /etc/cron.daily/dpkg ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25031 files and directories currently installed.) Preparing to unpack .../archives/lsb-base_11.6_all.deb ... Unpacking lsb-base (11.6) over (11.1.0) ... Preparing to unpack .../sysvinit-utils_3.09-2_amd64.deb ... Unpacking sysvinit-utils (3.09-2) over (2.96-7+deb11u1) ... dpkg: warning: unable to delete old directory '/lib/init': Directory not empty Setting up sysvinit-utils (3.09-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25030 files and directories currently installed.) Preparing to unpack .../x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) over (1:7.7+22) ... Preparing to unpack .../debianutils_5.19_amd64.deb ... Unpacking debianutils (5.19) over (4.11.2) ... Setting up debianutils (5.19) ... update-alternatives: using /usr/bin/which.debianutils to provide /usr/bin/which (which) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25032 files and directories currently installed.) Preparing to unpack .../bash_5.2.21-2.1_amd64.deb ... Unpacking bash (5.2.21-2.1) over (5.1-2+deb11u1) ... Setting up bash (5.2.21-2.1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25033 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.40.1-9_amd64.deb ... Unpacking bsdutils (1:2.40.1-9) over (1:2.36.1-8+deb11u1) ... Setting up bsdutils (1:2.40.1-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25034 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-2+b1_amd64.deb ... Unpacking libgmp10:amd64 (2:6.3.0+dfsg-2+b1) over (2:6.2.1+dfsg-1+deb11u1) ... Setting up libgmp10:amd64 (2:6.3.0+dfsg-2+b1) ... Selecting previously unselected package libssl3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25035 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.2.2-1_amd64.deb ... Unpacking libssl3t64:amd64 (3.2.2-1) ... Setting up libssl3t64:amd64 (3.2.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25050 files and directories currently installed.) Preparing to unpack .../coreutils_9.4-3.1_amd64.deb ... Unpacking coreutils (9.4-3.1) over (8.32-4+b1) ... Setting up coreutils (9.4-3.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25054 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-9_amd64.deb ... Unpacking dash (0.5.12-9) over (0.5.11+git20200708+dd9ef66-5) ... Setting up dash (0.5.12-9) ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25052 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.10-1_amd64.deb ... Unpacking diffutils (1:3.10-1) over (1:3.7-5) ... Setting up diffutils (1:3.10-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25054 files and directories currently installed.) Preparing to unpack .../findutils_4.10.0-2_amd64.deb ... Unpacking findutils (4.10.0-2) over (4.8.0-1) ... Setting up findutils (4.10.0-2) ... (Reading database ... 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Setting up libtinfo6:amd64 (6.5-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25052 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.5-2_amd64.deb ... Unpacking ncurses-bin (6.5-2) over (6.2+20201114-2+deb11u2) ... Setting up ncurses-bin (6.5-2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25053 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.272_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.272) over (0.260) ... Setting up libdebconfclient0:amd64 (0.272) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25055 files and directories currently installed.) Preparing to unpack .../libstdc++6_14.1.0-2_amd64.deb ... Unpacking libstdc++6:amd64 (14.1.0-2) over (10.2.1-6) ... Setting up libstdc++6:amd64 (14.1.0-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25055 files and directories currently installed.) Preparing to unpack .../libsasl2-2_2.1.28+dfsg1-6_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-6) over (2.1.27+dfsg-2.1+deb11u1) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../libldap-2.5-0_2.5.18+dfsg-1_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.18+dfsg-1) ... Preparing to unpack .../libnghttp2-14_1.62.1-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.62.1-1) over (1.43.0-1+deb11u1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../libunistring5_1.2-1_amd64.deb ... Unpacking libunistring5:amd64 (1.2-1) ... Setting up libunistring5:amd64 (1.2-1) ... dpkg: libpsl5:amd64: dependency problems, but removing anyway as you requested: libcurl3-gnutls:amd64 depends on libpsl5 (>= 0.16.0). (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25062 files and directories currently installed.) Preparing to unpack .../libpsl5t64_0.21.2-1.1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1) ... dpkg: libssh2-1:amd64: dependency problems, but removing anyway as you requested: libcurl3-gnutls:amd64 depends on libssh2-1 (>= 1.7.0). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25069 files and directories currently installed.) Removing libssh2-1:amd64 (1.9.0-2) ... Selecting previously unselected package libssh2-1t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25061 files and directories currently installed.) Preparing to unpack .../libssh2-1t64_1.11.0-5_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.0-5) ... dpkg: libcurl3-gnutls:amd64: dependency problems, but removing anyway as you requested: libhts3:amd64 depends on libcurl3-gnutls (>= 7.18.0). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25070 files and directories currently installed.) Removing libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u11) ... Selecting previously unselected package libcurl3t64-gnutls:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25061 files and directories currently installed.) Preparing to unpack .../libcurl3t64-gnutls_8.8.0-1_amd64.deb ... Unpacking libcurl3t64-gnutls:amd64 (8.8.0-1) ... Selecting previously unselected package libhtscodecs2:amd64. Preparing to unpack .../libhtscodecs2_1.6.0-1+b1_amd64.deb ... Unpacking libhtscodecs2:amd64 (1.6.0-1+b1) ... Preparing to unpack .../samtools_1.20-3_amd64.deb ... Unpacking samtools (1.20-3) over (1.11-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25083 files and directories currently installed.) Removing libhts3:amd64 (1.11-4) ... Selecting previously unselected package libhts3t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25068 files and directories currently installed.) Preparing to unpack .../libhts3t64_1.20+ds-1_amd64.deb ... Unpacking libhts3t64:amd64 (1.20+ds-1) ... dpkg: libhogweed6:amd64: dependency problems, but removing anyway as you requested: librtmp1:amd64 depends on libhogweed6. libgnutls30:amd64 depends on libhogweed6 (>= 3.6). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25084 files and directories currently installed.) Removing libhogweed6:amd64 (3.7.3-1) ... dpkg: libnettle8:amd64: dependency problems, but removing anyway as you requested: librtmp1:amd64 depends on libnettle8. libgnutls30:amd64 depends on libnettle8 (>= 3.7~). Removing libnettle8:amd64 (3.7.3-1) ... dpkg: libgnutls30:amd64: dependency problems, but removing anyway as you requested: librtmp1:amd64 depends on libgnutls30 (>= 3.6.14). libldap-2.4-2:amd64 depends on libgnutls30 (>= 3.7.0). apt depends on libgnutls30 (>= 3.7.0). Removing libgnutls30:amd64 (3.7.1-5+deb11u4) ... Selecting previously unselected package libnettle8t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25043 files and directories currently installed.) Preparing to unpack .../libnettle8t64_3.10-1_amd64.deb ... Unpacking libnettle8t64:amd64 (3.10-1) ... Setting up libnettle8t64:amd64 (3.10-1) ... Selecting previously unselected package libhogweed6t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25052 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.10-1_amd64.deb ... Unpacking libhogweed6t64:amd64 (3.10-1) ... Setting up libhogweed6t64:amd64 (3.10-1) ... Selecting previously unselected package libffi8:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25059 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.6-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.6-1) ... Setting up libffi8:amd64 (3.4.6-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25064 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.25.3-5_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.3-5) over (0.23.22-1) ... Setting up libp11-kit0:amd64 (0.25.3-5) ... Selecting previously unselected package libgnutls30t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25064 files and directories currently installed.) Preparing to unpack .../libgnutls30t64_3.8.5-4_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.5-4) ... Setting up libgnutls30t64:amd64 (3.8.5-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25093 files and directories currently installed.) Preparing to unpack .../librtmp1_2.4+20151223.gitfa8646d.1-2+b4_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) over (2.4+20151223.gitfa8646d.1-2+b2) ... Preparing to unpack .../libidn2-0_2.3.7-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.7-2) over (2.3.0-5) ... Setting up libidn2-0:amd64 (2.3.7-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25095 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.19.0-3+b2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.19.0-3+b2) over (4.16.0-2+deb11u1) ... Setting up libtasn1-6:amd64 (4.19.0-3+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25096 files and directories currently installed.) Preparing to unpack .../0-libbrotli1_1.1.0-2+b3_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b3) over (1.0.9-2+b2) ... Preparing to unpack .../1-libgssapi-krb5-2_1.21.2-1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.2-1) over (1.18.3-6+deb11u4) ... Preparing to unpack .../2-libkrb5-3_1.21.2-1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.2-1) over (1.18.3-6+deb11u4) ... Preparing to unpack .../3-libk5crypto3_1.21.2-1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.2-1) over (1.18.3-6+deb11u4) ... Preparing to unpack .../4-libkrb5support0_1.21.2-1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.2-1) over (1.18.3-6+deb11u4) ... Preparing to unpack .../5-libcom-err2_1.47.1-1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1) over (1.46.2-2) ... Preparing to unpack .../6-libkeyutils1_1.6.3-3_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-3) over (1.6.1-2) ... Preparing to unpack .../7-libdeflate0_1.20-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.20-1) over (1.7-1) ... dpkg: libapt-pkg6.0:amd64: dependency problems, but removing anyway as you requested: apt depends on libapt-pkg6.0 (>= 2.2.4). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25098 files and directories currently installed.) Removing libapt-pkg6.0:amd64 (2.2.4) ... Selecting previously unselected package libapt-pkg6.0t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25049 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.9.5_amd64.deb ... Unpacking libapt-pkg6.0t64:amd64 (2.9.5) ... Setting up libapt-pkg6.0t64:amd64 (2.9.5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25099 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.9.4-2_amd64.deb ... Unpacking liblz4-1:amd64 (1.9.4-2) over (1.9.3-2) ... Setting up liblz4-1:amd64 (1.9.4-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25099 files and directories currently installed.) Preparing to unpack .../libudev1_256.1-2_amd64.deb ... Unpacking libudev1:amd64 (256.1-2) over (247.3-7+deb11u4) ... Setting up libudev1:amd64 (256.1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25100 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.2-2+b1_amd64.deb ... Unpacking libxxhash0:amd64 (0.8.2-2+b1) over (0.8.0-2) ... Setting up libxxhash0:amd64 (0.8.2-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25101 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.5-1_all.deb ... Unpacking libsemanage-common (3.5-1) over (3.1-1) ... Setting up libsemanage-common (3.5-1) ... Installing new version of config file /etc/selinux/semanage.conf ... Selecting previously unselected package libsepol2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25101 files and directories currently installed.) Preparing to unpack .../libsepol2_3.5-2+b1_amd64.deb ... Unpacking libsepol2:amd64 (3.5-2+b1) ... Setting up libsepol2:amd64 (3.5-2+b1) ... Selecting previously unselected package libsemanage2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25106 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.5-1+b3_amd64.deb ... Unpacking libsemanage2:amd64 (3.5-1+b3) ... Setting up libsemanage2:amd64 (3.5-1+b3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25111 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.15.2-3_amd64.deb ... Unpacking passwd (1:4.15.2-3) over (1:4.8.1-1) ... Setting up passwd (1:4.15.2-3) ... Installing new version of config file /etc/default/useradd ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25149 files and directories currently installed.) Removing libsemanage1:amd64 (3.1-1+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25144 files and directories currently installed.) Preparing to unpack .../libacl1_2.3.2-2_amd64.deb ... Unpacking libacl1:amd64 (2.3.2-2) over (2.2.53-10) ... Setting up libacl1:amd64 (2.3.2-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25145 files and directories currently installed.) Preparing to unpack .../libattr1_1%3a2.5.2-1_amd64.deb ... Unpacking libattr1:amd64 (1:2.5.2-1) over (1:2.4.48-6) ... Setting up libattr1:amd64 (1:2.5.2-1) ... Installing new version of config file /etc/xattr.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25146 files and directories currently installed.) Preparing to unpack .../archives/adduser_3.137_all.deb ... moving unchanged adduser.conf to adduser.conf.update-old. New dpkg-conffile will come from the package. Unpacking adduser (3.137) over (3.118+deb11u1) ... Setting up adduser (3.137) ... Installing new version of config file /etc/deluser.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25108 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.43-7_amd64.deb ... Unpacking gpgv (2.2.43-7) over (2.2.27-2+deb11u2) ... Setting up gpgv (2.2.43-7) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25108 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2023.4_all.deb ... Unpacking debian-archive-keyring (2023.4) over (2021.1.1+deb11u1) ... Setting up debian-archive-keyring (2023.4) ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-buster-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bullseye-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-stable.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-security-automatic.gpg ... Removing obsolete conffile /etc/apt/trusted.gpg.d/debian-archive-bookworm-automatic.gpg ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25108 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.5-1_amd64.deb ... Unpacking libseccomp2:amd64 (2.5.5-1) over (2.5.1-1+deb11u1) ... Setting up libseccomp2:amd64 (2.5.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25108 files and directories currently installed.) Preparing to unpack .../archives/apt_2.9.5_amd64.deb ... Unpacking apt (2.9.5) over (2.2.4) ... Setting up apt (2.9.5) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt-compat ... Removing obsolete conffile /etc/kernel/postinst.d/apt-auto-removal ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25101 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.66_all.deb ... Unpacking init-system-helpers (1.66) over (1.60) ... Setting up init-system-helpers (1.66) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25101 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.5-2_all.deb ... Unpacking ncurses-base (6.5-2) over (6.2+20201114-2+deb11u2) ... Setting up ncurses-base (6.5-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25101 files and directories currently installed.) Preparing to unpack .../node-normalize.css_8.0.1-5_all.deb ... Unpacking node-normalize.css (8.0.1-5) over (8.0.1-3) ... dpkg: libnode72:amd64: dependency problems, but removing anyway as you requested: nodejs depends on libnode72 (= 12.22.12~dfsg-1~deb11u4). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25101 files and directories currently installed.) Removing libnode72:amd64 (12.22.12~dfsg-1~deb11u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25093 files and directories currently installed.) Preparing to unpack .../nodejs_20.15.0+dfsg-1_amd64.deb ... Unpacking nodejs (20.15.0+dfsg-1) over (12.22.12~dfsg-1~deb11u4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25111 files and directories currently installed.) Removing libc-ares2:amd64 (1.17.1-1+deb11u3) ... Selecting previously unselected package libcares2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25105 files and directories currently installed.) Preparing to unpack .../libcares2_1.31.0-1_amd64.deb ... Unpacking libcares2:amd64 (1.31.0-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25127 files and directories currently installed.) Removing libuv1:amd64 (1.40.0-2) ... Selecting previously unselected package libuv1t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25121 files and directories currently installed.) Preparing to unpack .../0-libuv1t64_1.48.0-5_amd64.deb ... Unpacking libuv1t64:amd64 (1.48.0-5) ... Selecting previously unselected package node-xtend. Preparing to unpack .../1-node-xtend_4.0.2-3_all.deb ... Unpacking node-xtend (4.0.2-3) ... Selecting previously unselected package node-acorn. Preparing to unpack .../2-node-acorn_8.8.1+ds+~cs25.17.7-2_all.deb ... Unpacking node-acorn (8.8.1+ds+~cs25.17.7-2) ... Selecting previously unselected package node-cjs-module-lexer. Preparing to unpack .../3-node-cjs-module-lexer_1.2.3+dfsg-1_all.deb ... Unpacking node-cjs-module-lexer (1.2.3+dfsg-1) ... Selecting previously unselected package node-undici. Preparing to unpack .../4-node-undici_5.28.4+dfsg1+~cs23.12.11-2_all.deb ... Unpacking node-undici (5.28.4+dfsg1+~cs23.12.11-2) ... Selecting previously unselected package libnode115:amd64. Preparing to unpack .../5-libnode115_20.15.0+dfsg-1_amd64.deb ... Unpacking libnode115:amd64 (20.15.0+dfsg-1) ... Preparing to unpack .../6-logsave_1.47.1-1_amd64.deb ... Unpacking logsave (1.47.1-1) over (1.46.2-2) ... dpkg: libext2fs2:amd64: dependency problems, but removing anyway as you requested: e2fsprogs depends on libext2fs2 (= 1.46.2-2). (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25541 files and directories currently installed.) Removing libext2fs2:amd64 (1.46.2-2) ... Selecting previously unselected package libext2fs2t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25534 files and directories currently installed.) Preparing to unpack .../libext2fs2t64_1.47.1-1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:amd64 (1.47.1-1) ... Setting up libcom-err2:amd64 (1.47.1-1) ... Setting up libext2fs2t64:amd64 (1.47.1-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25550 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.1-1_amd64.deb ... Unpacking e2fsprogs (1.47.1-1) over (1.46.2-2) ... dpkg: warning: unable to delete old directory '/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/udev': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd': Directory not empty Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../libcurl4t64_8.8.0-1_amd64.deb ... Unpacking libcurl4t64:amd64 (8.8.0-1) ... Preparing to unpack .../libaec0_1.1.3-1_amd64.deb ... Unpacking libaec0:amd64 (1.1.3-1) over (1.0.4-1) ... Preparing to unpack .../libsz2_1.1.3-1_amd64.deb ... Unpacking libsz2:amd64 (1.1.3-1) over (1.0.4-1) ... Preparing to unpack .../python3-h5py-serial_3.11.0-2_amd64.deb ... Unpacking python3-h5py-serial (3.11.0-2) over (2.10.0-9+b2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25584 files and directories currently installed.) Removing libhdf5-hl-100:amd64 (1.10.6+repack-4+deb11u1) ... Removing libhdf5-103-1:amd64 (1.10.6+repack-4+deb11u1) ... Selecting previously unselected package libhdf5-103-1t64:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25569 files and directories currently installed.) Preparing to unpack .../libhdf5-103-1t64_1.10.10+repack-3.3_amd64.deb ... Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-3.3) ... Selecting previously unselected package libhdf5-hl-100t64:amd64. Preparing to unpack .../libhdf5-hl-100t64_1.10.10+repack-3.3_amd64.deb ... Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-3.3) ... Preparing to unpack .../libfreetype6_2.13.2+dfsg-1+b4_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.2+dfsg-1+b4) over (2.10.4+dfsg-1+deb11u1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25587 files and directories currently installed.) Removing libpng16-16:amd64 (1.6.37-3) ... Selecting previously unselected package libpng16-16t64:amd64. (Reading database ... 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Setting up libperl5.38t64:amd64 (5.38.2-5) ... Setting up libssh2-1t64:amd64 (1.11.0-5) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up node-xtend (4.0.2-3) ... Setting up python-matplotlib-data (3.6.3-2) ... Installing new version of config file /etc/matplotlibrc ... Setting up openssl (3.2.2-1) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libwebpmux3:amd64 (1.4.0-0.1) ... Setting up node-normalize.css (8.0.1-5) ... Setting up libssw0:amd64 (1.1-14+b1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:amd64 (2.12.7+dfsg-3) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up node-thenby (1.3.4+git20200720.0fd165a+ds-5) ... Setting up libsz2:amd64 (1.1.3-1) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up gcc-9-base:amd64 (9.5.0-6+b1) ... Setting up libice6:amd64 (2:1.0.10-1+b1) ... Setting up liblapack3:amd64 (3.12.0-3) ... Setting up libmbedx509-1t64:amd64 (2.28.8-1) ... Setting up libopenblas0-pthread:amd64 (0.3.27+ds-2) ... Setting up libxrender1:amd64 (1:0.9.10-1.1+b1) ... Setting up fontconfig-config (2.15.0-1.1) ... Installing new version of config file /etc/fonts/conf.d/README ... Installing new version of config file /etc/fonts/fonts.conf ... Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up e2fsprogs (1.47.1-1) ... Installing new version of config file /etc/cron.d/e2scrub_all ... Installing new version of config file /etc/mke2fs.conf ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-1) ... Setting up libthai0:amd64 (0.1.29-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 37 added, 20 removed; done. Setting up perl (5.38.2-5) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Setting up libgssapi-krb5-2:amd64 (1.21.2-1) ... Setting up ucf (3.0043+nmu1) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up libopenblas0:amd64 (0.3.27+ds-2) ... Setting up libmbedtls14t64:amd64 (2.28.8-1) ... Setting up libxslt1.1:amd64 (1.1.35-1+b1) ... Setting up libharfbuzz0b:amd64 (8.3.0-2+b1) ... Setting up libxss1:amd64 (1:1.2.3-1+b1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1) ... Setting up mailcap (3.72) ... Setting up libsm6:amd64 (2:1.2.3-1+b1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Setting up libpaper1:amd64 (1.1.29+b1) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1+b1) ... Setting up libzmq5:amd64 (4.3.5-1+b2) ... Setting up libpython3.12-stdlib:amd64 (3.12.4-1) ... Setting up libcurl4t64:amd64 (8.8.0-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Setting up libtk8.6:amd64 (8.6.14-1) ... Setting up python3.12 (3.12.4-1) ... Setting up libpango-1.0-0:amd64 (1.54.0+ds-1) ... Setting up libcurl3t64-gnutls:amd64 (8.8.0-1) ... Setting up libpaper-utils (1.1.29+b1) ... Setting up libcairo2:amd64 (1.18.0-3+b1) ... Setting up libraqm0:amd64 (0.10.1-1+b1) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2) ... Setting up libnsl2:amd64 (1.3.0-3+b2) ... Setting up libhts3t64:amd64 (1.20+ds-1) ... Setting up libpangoft2-1.0-0:amd64 (1.54.0+ds-1) ... Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-3.3) ... Setting up libpangocairo-1.0-0:amd64 (1.54.0+ds-1) ... Setting up libpython3-stdlib:amd64 (3.12.2-1) ... Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-3.3) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3 (3.12.2-1) ... Setting up python3-markupsafe (2.1.5-1) ... Setting up python3-platformdirs (4.2.1-1) ... Setting up python3-psutil (5.9.8-2) ... Setting up python3-tz (2024.1-2) ... Setting up python3-natsort (8.0.2-2) ... Setting up samtools (1.20-3) ... Setting up bowtie2 (2.5.3-1) ... Setting up ncbi-blast+ (2.12.0+ds-4+b1) ... Setting up python3-six (1.16.0-6) ... Setting up python3-pil:amd64 (10.3.0-2) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.0-1) ... Setting up python3-wcwidth (0.2.13+dfsg1-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2024.6.2-1) ... Setting up python3-typeshed (0.0~git20231111.6764465-3) ... Setting up python3-werkzeug (3.0.3-1) ... Setting up python3-dill (0.3.8-1) ... Setting up python3-brotli (1.1.0-2+b3) ... Setting up python3-greenlet (3.0.1-3) ... Setting up python3-cycler (0.12.1-1) ... Setting up r-base-core (4.4.1-1) ... Creating config file /etc/R/Renviron with new version Setting up python3-kiwisolver (1.4.5-1) ... Setting up python3-setproctitle:amd64 (1.3.3-1+b2) ... Setting up python3-idna (3.6-2.1) ... Setting up r-cran-labeling (0.4.3-1) ... Setting up cython3 (3.0.10+dfsg-5) ... Setting up python3-typing-extensions (4.12.2-1) ... Setting up r-cran-lattice (0.22-6-1) ... Setting up python3-pickleshare (0.7.5-5) ... Setting up r-cran-nlme (3.1.165-1) ... Setting up r-cran-farver (2.1.2-1) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up r-cran-viridislite (0.4.2-2) ... Setting up python3-lxml:amd64 (5.2.1-1) ... Setting up python3-traitlets (5.14.3-1) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-msgpack (1.0.3-3+b1) ... Setting up python3-bibtexparser (2.0.0b5+really1.4.1-1) ... /usr/lib/python3/dist-packages/bibtexparser/latexenc.py:93: SyntaxWarning: invalid escape sequence '\g' string = re.sub('([^{]|^)([A-Z])([^}]|$)', '\g<1>{\g<2>}\g<3>', string) Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.3-1) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-tzlocal (5.2-1.1) ... Setting up python3-tomlkit (0.12.5-1) ... Setting up python3-lib2to3 (3.12.3-3.1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up python3-cffi-backend:amd64 (1.16.0-2+b2) ... Setting up python3-ptyprocess (0.7.0-5) ... Setting up python3-blinker (1.8.2-1) ... Setting up r-cran-littler (0.3.20-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-prompt-toolkit (3.0.47-1) ... Setting up python3-distutils (3.12.3-3.1) ... python3.12: can't get files for byte-compilation Setting up python3-sympy (1.12.1-1) ... Setting up r-cran-rcpp (1.0.12-1) ... Setting up python3-attr (23.2.0-2) ... Setting up python3-lockfile (1:0.12.2-3) ... Setting up python3-pure-eval (0.2.2-2) ... Setting up python3-filelock (3.14.0-1) ... Setting up r-bioc-biocgenerics (0.48.1-2) ... Setting up r-cran-rlang (1.1.4-1) ... Setting up littler (0.3.20-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-tblib (3.0.0-5) ... Setting up python3-py (1.11.0-2) ... Setting up python3-backcall (0.2.0-4) ... Setting up python3-ijson (3.3.0-1+b1) ... Setting up python3-joblib (1.3.2-2) ... Setting up python3-parso (0.8.3-1) ... Setting up python3-jwt (2.7.0-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-lz4 (4.0.2+dfsg-1+b3) ... Setting up python3-public (4.1.0-1) ... Setting up r-cran-withr (3.0.0+dfsg-1) ... Setting up python3-ipython-genutils (0.2.0-6) ... Setting up python3-asttokens (2.4.1-1) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-unicodedata2 (15.1.0+ds-1+b1) ... Setting up python3-bcrypt (3.2.2-1) ... Setting up python3-typeguard (4.1.5-1) ... Setting up python3-threadpoolctl (3.1.0-1) ... Setting up r-cran-fansi (1.0.5-1) ... Setting up r-cran-mass (7.3-61-1) ... Setting up python3-itsdangerous (2.2.0-1) ... Setting up python3-yaml (6.0.1-2) ... Setting up python3-tk:amd64 (3.12.3-3.1) ... Setting up python3-click (8.1.7-1) ... Setting up r-cran-glue (1.7.0-1) ... Setting up python3-networkx (3.2.1-4) ... Setting up r-cran-cli (3.6.2-1) ... Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... Setting up python3-sqlalchemy (2.0.30+ds1-3) ... Setting up python3-matplotlib-inline (0.1.6-2) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-flufl.lock (8.1.0-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-getopt (1.20.4-1) ... Setting up python3-pygments (2.18.0+dfsg-1) ... Setting up r-cran-utf8 (1.2.4-1) ... Setting up r-cran-colorspace (2.1-0+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up r-cran-stringi (1.8.3-1) ... Setting up python3-pil.imagetk:amd64 (10.3.0-2) ... Setting up python3-executing (2.0.1-0.1) ... Setting up python3-pexpect (4.9-2) ... Setting up r-cran-plyr (1.8.9-1) ... Setting up python3-zmq (24.0.1-5+b1) ... Setting up r-cran-rcolorbrewer (1.1-3-1) ... Setting up python3-cryptography (42.0.5-2) ... Setting up r-cran-isoband (0.2.7-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up r-cran-gtable (0.3.5+dfsg-1) ... Setting up r-cran-matrix (1.7-0-3) ... Setting up python3-numpy (1:1.26.4+ds-10) ... Setting up r-cran-mgcv (1.9-1-1) ... Setting up python3-hdmedians (0.14.2-5.1) ... Setting up python3-contourpy (1.0.7-3) ... Setting up python3-cachecontrol (0.14.0-1) ... Setting up python3-stack-data (0.6.3-1) ... Setting up r-cran-optparse (1.7.4-1) ... Setting up r-cran-vctrs (0.6.5-1) ... Setting up python3-nacl (1.5.0-4) ... Setting up python3-globus-sdk (3.41.0-1) ... Setting up r-cran-pillar (1.9.0+dfsg-1) ... Setting up python3-scipy (1.12.0-2) ... Setting up r-cran-stringr (1.5.1-1) ... Setting up python3-jedi (0.19.1+ds1-1) ... Setting up python3-flask (3.0.3-1) ... Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-8) ... Setting up r-cran-munsell (0.5.1-1) ... Setting up r-cran-tibble (3.2.1+dfsg-2) ... Setting up python3-sklearn-lib:amd64 (1.4.2+dfsg-3) ... Setting up python3-h5py-serial (3.11.0-2) ... Setting up r-cran-reshape2 (1.4.4-2) ... Setting up python3-pandas (2.1.4+dfsg-8) ... Setting up python3-ipython (8.20.0-1) ... Setting up r-cran-scales (1.3.0-1) ... Setting up python3-h5py (3.11.0-2) ... Setting up python3-sklearn (1.4.2+dfsg-3) ... Setting up python3-paramiko (3.4.0-1) ... Setting up python3-flask-sqlalchemy (3.1.1-2) ... Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... Setting up q2templates (2024.5.0+ds-1) ... Setting up python3-parsl (2024.05.27+ds-1) ... Setting up qiime (2024.5.0-1) ... Setting up python3-biom-format (2.1.16-1) ... Setting up r-bioc-decontam (1.22.0+dfsg-2) ... Setting up python3-fonttools (4.46.0-1) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up node-acorn (8.8.1+ds+~cs25.17.7-2) ... Setting up libnode115:amd64 (20.15.0+dfsg-1) ... Setting up python3-matplotlib (3.6.3-2) ... Setting up python3-seaborn (0.13.2-3) ... Setting up nodejs (20.15.0+dfsg-1) ... Setting up python3-skbio (0.5.9-4) ... Setting up q2-types (2024.5.0-1) ... Setting up q2-taxa (2024.5.0+dfsg-1) ... Setting up q2-quality-control (2024.5.0-1) ... Processing triggers for debianutils (5.19) ... Processing triggers for libc-bin (2.38-13) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. 3m40.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-get', '-yf', 'dist-upgrade'] 3m40.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 3m41.8s DUMP: 54413bf9c1b209634942a288b7842089 - 3m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 3m41.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-cache', 'show', '--no-all-versions', 'q2-quality-control'] 3m42.2s DUMP: Package: q2-quality-control Version: 2024.5.0-1 Installed-Size: 3746 Maintainer: Debian Med Packaging Team Architecture: all Depends: python3:any, python3-biom-format, python3-h5py, python3-seaborn, python3-numpy, python3-pandas, python3-scipy (>= 1.10~), qiime (>= 2024.5), q2templates (>= 2024.5), q2-taxa (>= 2024.5), r-base-core, r-bioc-decontam, r-cran-optparse, bowtie2, ncbi-blast+, samtools, vsearch Description-en: QIIME 2 plugin for quality assurance of feature and sequence data QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features: * Integrated and automatic tracking of data provenance * Semantic type system * Plugin system for extending microbiome analysis functionality * Support for multiple types of user interfaces (e.g. API, command line, graphical) . QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline. . QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed. Description-md5: c482bb89f1c63b4de2169ec655268f05 Homepage: https://qiime2.org/ Section: science Priority: optional Filename: pool/main/q/q2-quality-control/q2-quality-control_2024.5.0-1_all.deb Size: 728608 MD5sum: 8547f6a9890fa684a9e2e7bdd661917d SHA256: a0cf9addd2808b4e8813fc9ca60e6839c2d56e4640fc2fdb44e22fd05ea475ab 3m42.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-cache', 'show', '--no-all-versions', 'q2-quality-control'] 3m42.2s INFO: apt-cache knows about the following packages: q2-quality-control 3m42.2s INFO: Running scripts pre_install 3m42.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_database-server'] 3m42.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_database-server'] 3m42.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_exceptions'] 3m42.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_exceptions'] 3m42.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_extras'] 3m42.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_extras'] 3m42.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_foreign_architecture'] 3m42.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_foreign_architecture'] 3m42.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m42.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m42.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-cache', 'policy'] 3m42.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 3m42.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-cache', 'policy'] 3m42.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-cache', 'policy', 'q2-quality-control'] 3m42.4s DUMP: q2-quality-control: Installed: 2024.5.0-1 Candidate: 2024.5.0-1 Version table: *** 2024.5.0-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 3m42.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-cache', 'policy', 'q2-quality-control'] 3m42.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-get', '-y', 'install', 'q2-quality-control'] 3m43.1s DUMP: Reading package lists... Building dependency tree... Reading state information... q2-quality-control is already the newest version (2024.5.0-1). The following packages were automatically installed and are no longer required: cython3 libcares2 libicu67 libldap-2.4-2 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec3 libnode115 libopenblas-base libperl5.32 libproc2-0 libprocps8 libpython3.9-minimal libpython3.9-stdlib libquadmath0 libtbb2 libtiff5 libuv1t64 libwebp6 node-acorn node-cjs-module-lexer node-undici node-xtend nodejs perl-modules-5.32 procps python3-backcall python3-cachecontrol python3-future python3-ipython-genutils python3-joblib python3-lockfile python3-msgpack python3-pickleshare python3-sklearn python3-sklearn-lib python3-threadpoolctl python3.9 python3.9-minimal Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3m43.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-get', '-y', 'install', 'q2-quality-control'] 3m43.1s INFO: Running scripts post_install 3m43.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_install_exceptions'] 3m43.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_install_exceptions'] 3m43.1s INFO: Running scripts post_distupgrade 3m43.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_distupgrade_base_cleanup'] 3m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_distupgrade_base_cleanup'] 3m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_distupgrade_exceptions'] 3m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_distupgrade_exceptions'] 3m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 3m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 3m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_distupgrade_squeeze-backports'] 3m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_distupgrade_squeeze-backports'] 3m43.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_distupgrade_zz_backports'] 3m43.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_distupgrade_zz_backports'] 3m43.2s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti'] 3m45.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti'] 3m45.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti'] 3m46.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti'] 3m46.9s INFO: Running scripts pre_install 3m46.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_database-server'] 3m46.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_database-server'] 3m46.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_exceptions'] 3m46.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_exceptions'] 3m46.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_extras'] 3m46.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_extras'] 3m46.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_foreign_architecture'] 3m46.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_foreign_architecture'] 3m46.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m46.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_install_foreign_architecture_i386'] 3m46.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-cache', 'policy'] 3m47.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://deb.debian.org/debian sid/main amd64 Packages release o=Debian,a=unstable,n=sid,l=Debian,c=main,b=amd64 origin deb.debian.org Pinned packages: 3m47.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-cache', 'policy'] 3m47.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-cache', 'policy', 'q2-quality-control'] 3m47.1s DUMP: q2-quality-control: Installed: 2024.5.0-1 Candidate: 2024.5.0-1 Version table: *** 2024.5.0-1 500 500 http://deb.debian.org/debian sid/main amd64 Packages 100 /var/lib/dpkg/status 3m47.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-cache', 'policy', 'q2-quality-control'] 3m47.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-get', '-y', 'install', 'q2-quality-control=2024.5.0-1'] 3m47.9s DUMP: Reading package lists... Building dependency tree... Reading state information... q2-quality-control is already the newest version (2024.5.0-1). The following packages were automatically installed and are no longer required: cython3 libcares2 libicu67 libldap-2.4-2 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec3 libnode115 libopenblas-base libperl5.32 libproc2-0 libprocps8 libpython3.9-minimal libpython3.9-stdlib libquadmath0 libtbb2 libtiff5 libuv1t64 libwebp6 node-acorn node-cjs-module-lexer node-undici node-xtend nodejs perl-modules-5.32 procps python3-backcall python3-cachecontrol python3-future python3-ipython-genutils python3-joblib python3-lockfile python3-msgpack python3-pickleshare python3-sklearn python3-sklearn-lib python3-threadpoolctl python3.9 python3.9-minimal Use 'sudo apt autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3m47.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-get', '-y', 'install', 'q2-quality-control=2024.5.0-1'] 3m47.9s INFO: Running scripts post_install 3m47.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_install_exceptions'] 3m47.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_install_exceptions'] 3m48.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti'] 3m50.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti'] 3m50.2s INFO: /lib converted to /usr/lib by /usr merge 3m50.2s INFO: /lib/x86_64-linux-gnu converted to /usr/lib/x86_64-linux-gnu by /usr merge 3m54.2s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', '-ac', '--ignore-obsolete'] 4m0.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', '-ac', '--ignore-obsolete'] 4m0.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 4m0.2s DUMP: 0.15.6 4m0.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 4m0.2s INFO: Running adequate version 0.15.6 now. 4m0.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'q2-quality-control'] 4m0.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'q2-quality-control'] 4m0.3s INFO: Running scripts pre_remove 4m0.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 4m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 4m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 4m0.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 4m0.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 4m9.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 4m9.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 4m10.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 4m10.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 4m10.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 4m10.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_remove_exceptions'] 4m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/pre_remove_exceptions'] 4m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 4m10.4s DUMP: install ok installed adduser adduser 3.137 install ok installed apt apt 2.9.5 install ok installed base-files base-files 13.3 install ok installed base-passwd base-passwd 3.6.3 install ok installed bash bash 5.2.21-2.1 install ok installed blt blt 2.5.3+dfsg-7 install ok installed bowtie2 bowtie2 2.5.3-1 install ok installed bsdutils bsdutils 1:2.40.1-9 install ok installed ca-certificates ca-certificates 20240203 install ok installed coreutils coreutils 9.4-3.1 install ok installed cython3 cython3 3.0.10+dfsg-5 install ok installed dash dash 0.5.12-9 install ok installed debconf debconf 1.5.86 install ok installed debian-archive-keyring debian-archive-keyring 2023.4 install ok installed debianutils debianutils 5.19 install ok installed diffutils diffutils 1:3.10-1 install ok installed dpkg dpkg 1.22.6 install ok installed e2fsprogs e2fsprogs 1.47.1-1 install ok installed findutils findutils 4.10.0-2 install ok installed fontconfig fontconfig 2.15.0-1.1 install ok installed fontconfig-config fontconfig-config 2.15.0-1.1 install ok installed fonts-dejavu-core fonts-dejavu-core 2.37-8 install ok installed fonts-dejavu-mono fonts-dejavu-mono 2.37-8 install ok installed fonts-glyphicons-halflings fonts-glyphicons-halflings 1.009~3.4.1+dfsg-3 install ok installed fonts-lyx fonts-lyx 2.4.0-1 install ok installed gcc-10-base:amd64 gcc-10-base 10.5.0-4 install ok installed gcc-14-base:amd64 gcc-14-base 14.1.0-2 install ok installed gcc-9-base:amd64 gcc-9-base 9.5.0-6+b1 install ok installed gpgv gpgv 2.2.43-7 install ok installed grep grep 3.11-4 install ok installed gzip gzip 1.12-1.1 install ok installed hostname hostname 3.23+nmu2 install ok installed init-system-helpers init-system-helpers 1.66 install ok installed javascript-common javascript-common 11+nmu1 install ok installed libacl1:amd64 libacl1 2.3.2-2 install ok installed libaec0:amd64 libaec0 1.1.3-1 install ok installed libapt-pkg6.0t64:amd64 libapt-pkg6.0t64 2.9.5 install ok installed libattr1:amd64 libattr1 1:2.5.2-1 install ok installed libaudit-common libaudit-common 1:3.1.2-4 install ok installed libaudit1:amd64 libaudit1 1:3.1.2-4 install ok installed libblas3:amd64 libblas3 3.12.0-3 install ok installed libblkid1:amd64 libblkid1 2.40.1-9 install ok installed libbrotli1:amd64 libbrotli1 1.1.0-2+b3 install ok installed libbsd0:amd64 libbsd0 0.12.2-1 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.8-5.1 install ok installed libc-bin libc-bin 2.38-13 install ok installed libc6:amd64 libc6 2.38-13 install ok installed libcairo2:amd64 libcairo2 1.18.0-3+b1 install ok installed libcap-ng0:amd64 libcap-ng0 0.8.5-1 install ok installed libcap2:amd64 libcap2 1:2.66-5 install ok installed libcares2:amd64 libcares2 1.31.0-1 install ok installed libcom-err2:amd64 libcom-err2 1.47.1-1 install ok installed libcrypt1:amd64 libcrypt1 1:4.4.36-4 install ok installed libcurl3t64-gnutls:amd64 libcurl3t64-gnutls 8.8.0-1 install ok installed libcurl4t64:amd64 libcurl4t64 8.8.0-1 install ok installed libdatrie1:amd64 libdatrie1 0.2.13-3 install ok installed libdb5.3t64:amd64 libdb5.3t64 5.3.28+dfsg2-7 install ok installed libdebconfclient0:amd64 libdebconfclient0 0.272 install ok installed libdeflate0:amd64 libdeflate0 1.20-1 install ok installed libexpat1:amd64 libexpat1 2.6.2-1 install ok installed libext2fs2t64:amd64 libext2fs2t64 1.47.1-1 install ok installed libffi7:amd64 libffi7 3.3-6 install ok installed libffi8:amd64 libffi8 3.4.6-1 install ok installed libfontconfig1:amd64 libfontconfig1 2.15.0-1.1 install ok installed libfreetype6:amd64 libfreetype6 2.13.2+dfsg-1+b4 install ok installed libfribidi0:amd64 libfribidi0 1.0.13-3+b1 install ok installed libgcc-s1:amd64 libgcc-s1 14.1.0-2 install ok installed libgcrypt20:amd64 libgcrypt20 1.10.3-3 install ok installed libgdbm-compat4t64:amd64 libgdbm-compat4t64 1.23-6 install ok installed libgdbm6t64:amd64 libgdbm6t64 1.23-6 install ok installed libgfortran5:amd64 libgfortran5 14.1.0-2 install ok installed libglib2.0-0t64:amd64 libglib2.0-0t64 2.80.3-1 install ok installed libgmp10:amd64 libgmp10 2:6.3.0+dfsg-2+b1 install ok installed libgnutls30t64:amd64 libgnutls30t64 3.8.5-4 install ok installed libgomp1:amd64 libgomp1 14.1.0-2 install ok installed libgpg-error0:amd64 libgpg-error0 1.49-2 install ok installed libgraphite2-3:amd64 libgraphite2-3 1.3.14-2 install ok installed libgssapi-krb5-2:amd64 libgssapi-krb5-2 1.21.2-1 install ok installed libharfbuzz0b:amd64 libharfbuzz0b 8.3.0-2+b1 install ok installed libhdf5-103-1t64:amd64 libhdf5-103-1t64 1.10.10+repack-3.3 install ok installed libhdf5-hl-100t64:amd64 libhdf5-hl-100t64 1.10.10+repack-3.3 install ok installed libhogweed6t64:amd64 libhogweed6t64 3.10-1 install ok installed libhts3t64:amd64 libhts3t64 1.20+ds-1 install ok installed libhtscodecs2:amd64 libhtscodecs2 1.6.0-1+b1 install ok installed libice6:amd64 libice6 2:1.0.10-1+b1 install ok installed libicu67:amd64 libicu67 67.1-7 install ok installed libicu72:amd64 libicu72 72.1-4+b1 install ok installed libidn2-0:amd64 libidn2-0 2.3.7-2 install ok installed libimagequant0:amd64 libimagequant0 2.18.0-1+b1 install ok installed libjbig0:amd64 libjbig0 2.1-6.1+b1 install ok installed libjpeg62-turbo:amd64 libjpeg62-turbo 1:2.1.5-3 install ok installed libjs-bootstrap libjs-bootstrap 3.4.1+dfsg-3 install ok installed libjs-jquery libjs-jquery 3.6.1+dfsg+~3.5.14-1 install ok installed libjs-jquery-ui libjs-jquery-ui 1.13.2+dfsg-1 install ok installed libjs-popper.js libjs-popper.js 1.16.1+ds-6 install ok installed libk5crypto3:amd64 libk5crypto3 1.21.2-1 install ok installed libkeyutils1:amd64 libkeyutils1 1.6.3-3 install ok installed libkrb5-3:amd64 libkrb5-3 1.21.2-1 install ok installed libkrb5support0:amd64 libkrb5support0 1.21.2-1 install ok installed liblapack3:amd64 liblapack3 3.12.0-3 install ok installed liblbfgsb0:amd64 liblbfgsb0 3.0+dfsg.4-1+b1 install ok installed liblcms2-2:amd64 liblcms2-2 2.14-2+b1 install ok installed libldap-2.4-2:amd64 libldap-2.4-2 2.4.57+dfsg-3+deb11u1 install ok installed libldap-2.5-0:amd64 libldap-2.5-0 2.5.18+dfsg-1 install ok installed liblerc4:amd64 liblerc4 4.0.0+ds-4+b1 install ok installed liblmdb0:amd64 liblmdb0 0.9.31-1+b1 install ok installed liblz4-1:amd64 liblz4-1 1.9.4-2 install ok installed liblzf1:amd64 liblzf1 3.6-4+b1 install ok installed liblzma5:amd64 liblzma5 5.6.2-1 install ok installed libmbedcrypto3:amd64 libmbedcrypto3 2.16.9-0.1 install ok installed libmbedcrypto7t64:amd64 libmbedcrypto7t64 2.28.8-1 install ok installed libmbedtls12:amd64 libmbedtls12 2.16.9-0.1 install ok installed libmbedtls14t64:amd64 libmbedtls14t64 2.28.8-1 install ok installed libmbedx509-0:amd64 libmbedx509-0 2.16.9-0.1 install ok installed libmbedx509-1t64:amd64 libmbedx509-1t64 2.28.8-1 install ok installed libmd0:amd64 libmd0 1.1.0-2 install ok installed libmount1:amd64 libmount1 2.40.1-9 install ok installed libmpdec3:amd64 libmpdec3 2.5.1-1 install ok installed libncurses6:amd64 libncurses6 6.5-2 install ok installed libncursesw6:amd64 libncursesw6 6.5-2 install ok installed libnettle8t64:amd64 libnettle8t64 3.10-1 install ok installed libnghttp2-14:amd64 libnghttp2-14 1.62.1-1 install ok installed libnode115:amd64 libnode115 20.15.0+dfsg-1 install ok installed libnorm1t64:amd64 libnorm1t64 1.5.9+dfsg-3.1 install ok installed libnsl2:amd64 libnsl2 1.3.0-3+b2 install ok installed libopenblas-base:amd64 libopenblas-base 0.3.13+ds-3+deb11u1 install ok installed libopenblas0:amd64 libopenblas0 0.3.27+ds-2 install ok installed libopenblas0-pthread:amd64 libopenblas0-pthread 0.3.27+ds-2 install ok installed libopenjp2-7:amd64 libopenjp2-7 2.5.0-2+b3 install ok installed libp11-kit0:amd64 libp11-kit0 0.25.3-5 install ok installed libpam-modules:amd64 libpam-modules 1.5.3-7 install ok installed libpam-modules-bin libpam-modules-bin 1.5.3-7 install ok installed libpam-runtime libpam-runtime 1.5.3-7 install ok installed libpam0g:amd64 libpam0g 1.5.3-7 install ok installed libpango-1.0-0:amd64 libpango-1.0-0 1.54.0+ds-1 install ok installed libpangocairo-1.0-0:amd64 libpangocairo-1.0-0 1.54.0+ds-1 install ok installed libpangoft2-1.0-0:amd64 libpangoft2-1.0-0 1.54.0+ds-1 install ok installed libpaper-utils libpaper-utils 1.1.29+b1 install ok installed libpaper1:amd64 libpaper1 1.1.29+b1 install ok installed libpcre2-8-0:amd64 libpcre2-8-0 10.42-4+b1 install ok installed libpcre3:amd64 libpcre3 2:8.39-15+b1 install ok installed libperl5.32:amd64 libperl5.32 5.32.1-4+deb11u3 install ok installed libperl5.38t64:amd64 libperl5.38t64 5.38.2-5 install ok installed libpgm-5.3-0t64:amd64 libpgm-5.3-0t64 5.3.128~dfsg-2.1 install ok installed libpixman-1-0:amd64 libpixman-1-0 0.42.2-1+b1 install ok installed libpng16-16t64:amd64 libpng16-16t64 1.6.43-5 install ok installed libproc2-0:amd64 libproc2-0 2:4.0.4-4 install ok installed libprocps8:amd64 libprocps8 2:3.3.17-5 install ok installed libpsl5t64:amd64 libpsl5t64 0.21.2-1.1 install ok installed libpython3-stdlib:amd64 libpython3-stdlib 3.12.2-1 install ok installed libpython3.12-minimal:amd64 libpython3.12-minimal 3.12.4-1 install ok installed libpython3.12-stdlib:amd64 libpython3.12-stdlib 3.12.4-1 install ok installed libpython3.9-minimal:amd64 libpython3.9-minimal 3.9.2-1 install ok installed libpython3.9-stdlib:amd64 libpython3.9-stdlib 3.9.2-1 install ok installed libqhull-r8.0:amd64 libqhull-r8.0 2020.2-6+b1 install ok installed libquadmath0:amd64 libquadmath0 14.1.0-2 install ok installed libraqm0:amd64 libraqm0 0.10.1-1+b1 install ok installed libreadline8t64:amd64 libreadline8t64 8.2-4 install ok installed librtmp1:amd64 librtmp1 2.4+20151223.gitfa8646d.1-2+b4 install ok installed libsasl2-2:amd64 libsasl2-2 2.1.28+dfsg1-6 install ok installed libsasl2-modules-db:amd64 libsasl2-modules-db 2.1.28+dfsg1-6 install ok installed libseccomp2:amd64 libseccomp2 2.5.5-1 install ok installed libselinux1:amd64 libselinux1 3.5-2+b2 install ok installed libsemanage-common libsemanage-common 3.5-1 install ok installed libsemanage2:amd64 libsemanage2 3.5-1+b3 install ok installed libsepol1:amd64 libsepol1 3.1-1 install ok installed libsepol2:amd64 libsepol2 3.5-2+b1 install ok installed libsharpyuv0:amd64 libsharpyuv0 1.4.0-0.1 install ok installed libsm6:amd64 libsm6 2:1.2.3-1+b1 install ok installed libsmartcols1:amd64 libsmartcols1 2.40.1-9 install ok installed libsodium23:amd64 libsodium23 1.0.18-1+b1 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.46.0-1 install ok installed libss2:amd64 libss2 1.47.1-1 install ok installed libssh2-1t64:amd64 libssh2-1t64 1.11.0-5 install ok installed libssl1.1:amd64 libssl1.1 1.1.1w-0+deb11u1 install ok installed libssl3t64:amd64 libssl3t64 3.2.2-1 install ok installed libssw0:amd64 libssw0 1.1-14+b1 install ok installed libstdc++6:amd64 libstdc++6 14.1.0-2 install ok installed libsystemd0:amd64 libsystemd0 256.1-2 install ok installed libsz2:amd64 libsz2 1.1.3-1 install ok installed libtasn1-6:amd64 libtasn1-6 4.19.0-3+b2 install ok installed libtbb2:amd64 libtbb2 2020.3-1 install ok installed libtcl8.6:amd64 libtcl8.6 8.6.14+dfsg-1 install ok installed libthai-data libthai-data 0.1.29-2 install ok installed libthai0:amd64 libthai0 0.1.29-2 install ok installed libtiff5:amd64 libtiff5 4.2.0-1+deb11u5 install ok installed libtiff6:amd64 libtiff6 4.5.1+git230720-4 install ok installed libtinfo6:amd64 libtinfo6 6.5-2 install ok installed libtirpc-common libtirpc-common 1.3.4+ds-1.3 install ok installed libtirpc3t64:amd64 libtirpc3t64 1.3.4+ds-1.3 install ok installed libtk8.6:amd64 libtk8.6 8.6.14-1 install ok installed libudev1:amd64 libudev1 256.1-2 install ok installed libunistring2:amd64 libunistring2 0.9.10-4 install ok installed libunistring5:amd64 libunistring5 1.2-1 install ok installed libuuid1:amd64 libuuid1 2.40.1-9 install ok installed libuv1t64:amd64 libuv1t64 1.48.0-5 install ok installed libwebp6:amd64 libwebp6 0.6.1-2.1+deb11u2 install ok installed libwebp7:amd64 libwebp7 1.4.0-0.1 install ok installed libwebpdemux2:amd64 libwebpdemux2 1.4.0-0.1 install ok installed libwebpmux3:amd64 libwebpmux3 1.4.0-0.1 install ok installed libx11-6:amd64 libx11-6 2:1.8.7-1+b1 install ok installed libx11-data libx11-data 2:1.8.7-1 install ok installed libxau6:amd64 libxau6 1:1.0.9-1+b1 install ok installed libxcb-render0:amd64 libxcb-render0 1.17.0-2 install ok installed libxcb-shm0:amd64 libxcb-shm0 1.17.0-2 install ok installed libxcb1:amd64 libxcb1 1.17.0-2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.2-3+b1 install ok installed libxext6:amd64 libxext6 2:1.3.4-1+b1 install ok installed libxft2:amd64 libxft2 2.3.6-1+b1 install ok installed libxml2:amd64 libxml2 2.12.7+dfsg-3 install ok installed libxrender1:amd64 libxrender1 1:0.9.10-1.1+b1 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.35-1+b1 install ok installed libxss1:amd64 libxss1 1:1.2.3-1+b1 install ok installed libxt6t64:amd64 libxt6t64 1:1.2.1-1.2 install ok installed libxxhash0:amd64 libxxhash0 0.8.2-2+b1 install ok installed libyajl2:amd64 libyajl2 2.1.0-5+b1 install ok installed libyaml-0-2:amd64 libyaml-0-2 0.2.5-1+b1 install ok installed libzmq5:amd64 libzmq5 4.3.5-1+b2 install ok installed libzstd1:amd64 libzstd1 1.5.6+dfsg-1 install ok installed littler littler 0.3.20-1 install ok installed login login 1:4.15.2-3 install ok installed logsave logsave 1.47.1-1 install ok installed lsb-base lsb-base 11.6 install ok installed mailcap mailcap 3.72 install ok installed mawk mawk 1.3.4.20240622-1 install ok installed media-types media-types 10.1.0 install ok installed mime-support mime-support 3.66 install ok installed mount mount 2.40.1-9 install ok installed ncbi-blast+ ncbi-blast+ 2.12.0+ds-4+b1 install ok installed ncbi-data ncbi-data 6.1.20170106+dfsg2-2 install ok installed ncurses-base ncurses-base 6.5-2 install ok installed ncurses-bin ncurses-bin 6.5-2 install ok installed netbase netbase 6.4 install ok installed node-acorn node-acorn 8.8.1+ds+~cs25.17.7-2 install ok installed node-cjs-module-lexer node-cjs-module-lexer 1.2.3+dfsg-1 install ok installed node-d3-color node-d3-color 1.4.1+~1.4.2-1 install ok installed node-d3-interpolate node-d3-interpolate 1.4.0+~1.4.2-1 install ok installed node-d3-scale-chromatic node-d3-scale-chromatic 1.5.0+~1.5.1-1 install ok installed node-fortawesome-fontawesome-free node-fortawesome-fontawesome-free 6.4.2+ds1-1 install ok installed node-natural-sort node-natural-sort 1.0.0-5 install ok installed node-normalize.css node-normalize.css 8.0.1-5 install ok installed node-thenby node-thenby 1.3.4+git20200720.0fd165a+ds-5 install ok installed node-undici node-undici 5.28.4+dfsg1+~cs23.12.11-2 install ok installed node-xtend node-xtend 4.0.2-3 install ok installed nodejs nodejs 20.15.0+dfsg-1 install ok installed openssl openssl 3.2.2-1 install ok installed passwd passwd 1:4.15.2-3 install ok installed perl perl 5.38.2-5 install ok installed perl-base perl-base 5.38.2-5 install ok installed perl-modules-5.32 perl-modules-5.32 5.32.1-4+deb11u3 install ok installed perl-modules-5.38 perl-modules-5.38 5.38.2-5 install ok installed procps procps 2:4.0.4-4 install ok installed python-matplotlib-data python-matplotlib-data 3.6.3-2 install ok installed python3 python3 3.12.2-1 install ok installed python3-appdirs python3-appdirs 1.4.4-4 install ok installed python3-asttokens python3-asttokens 2.4.1-1 install ok installed python3-attr python3-attr 23.2.0-2 install ok installed python3-backcall python3-backcall 0.2.0-4 install ok installed python3-bcrypt python3-bcrypt 3.2.2-1 install ok installed python3-bibtexparser python3-bibtexparser 2.0.0b5+really1.4.1-1 install ok installed python3-biom-format python3-biom-format 2.1.16-1 install ok installed python3-blinker python3-blinker 1.8.2-1 install ok installed python3-brotli python3-brotli 1.1.0-2+b3 install ok installed python3-cachecontrol python3-cachecontrol 0.14.0-1 install ok installed python3-certifi python3-certifi 2024.6.2-1 install ok installed python3-cffi-backend:amd64 python3-cffi-backend 1.16.0-2+b2 install ok installed python3-chardet python3-chardet 5.2.0+dfsg-1 install ok installed python3-charset-normalizer python3-charset-normalizer 3.3.2-1 install ok installed python3-click python3-click 8.1.7-1 install ok installed python3-colorama python3-colorama 0.4.6-4 install ok installed python3-contourpy python3-contourpy 1.0.7-3 install ok installed python3-cryptography python3-cryptography 42.0.5-2 install ok installed python3-cycler python3-cycler 0.12.1-1 install ok installed python3-dateutil python3-dateutil 2.9.0-2 install ok installed python3-decorator python3-decorator 5.1.1-5 install ok installed python3-dill python3-dill 0.3.8-1 install ok installed python3-distutils python3-distutils 3.12.3-3.1 install ok installed python3-executing python3-executing 2.0.1-0.1 install ok installed python3-filelock python3-filelock 3.14.0-1 install ok installed python3-flask python3-flask 3.0.3-1 install ok installed python3-flask-sqlalchemy python3-flask-sqlalchemy 3.1.1-2 install ok installed python3-flufl.lock python3-flufl.lock 8.1.0-1 install ok installed python3-fonttools python3-fonttools 4.46.0-1 install ok installed python3-fs python3-fs 2.4.16-4 install ok installed python3-future python3-future 0.18.2-5 install ok installed python3-globus-sdk python3-globus-sdk 3.41.0-1 install ok installed python3-greenlet python3-greenlet 3.0.1-3 install ok installed python3-h5py python3-h5py 3.11.0-2 install ok installed python3-h5py-serial python3-h5py-serial 3.11.0-2 install ok installed python3-hdmedians python3-hdmedians 0.14.2-5.1 install ok installed python3-idna python3-idna 3.6-2.1 install ok installed python3-ijson python3-ijson 3.3.0-1+b1 install ok installed python3-ipython python3-ipython 8.20.0-1 install ok installed python3-ipython-genutils python3-ipython-genutils 0.2.0-6 install ok installed python3-itsdangerous python3-itsdangerous 2.2.0-1 install ok installed python3-jedi python3-jedi 0.19.1+ds1-1 install ok installed python3-jinja2 python3-jinja2 3.1.3-1 install ok installed python3-joblib python3-joblib 1.3.2-2 install ok installed python3-jwt python3-jwt 2.7.0-1 install ok installed python3-kiwisolver python3-kiwisolver 1.4.5-1 install ok installed python3-lib2to3 python3-lib2to3 3.12.3-3.1 install ok installed python3-lockfile python3-lockfile 1:0.12.2-3 install ok installed python3-lxml:amd64 python3-lxml 5.2.1-1 install ok installed python3-lz4 python3-lz4 4.0.2+dfsg-1+b3 install ok installed python3-markupsafe python3-markupsafe 2.1.5-1 install ok installed python3-matplotlib python3-matplotlib 3.6.3-2 install ok installed python3-matplotlib-inline python3-matplotlib-inline 0.1.6-2 install ok installed python3-minimal python3-minimal 3.12.2-1 install ok installed python3-mpmath python3-mpmath 1.3.0-1 install ok installed python3-msgpack python3-msgpack 1.0.3-3+b1 install ok installed python3-nacl python3-nacl 1.5.0-4 install ok installed python3-natsort python3-natsort 8.0.2-2 install ok installed python3-networkx python3-networkx 3.2.1-4 install ok installed python3-numpy python3-numpy 1:1.26.4+ds-10 install ok installed python3-packaging python3-packaging 24.0-1 install ok installed python3-pandas python3-pandas 2.1.4+dfsg-8 install ok installed python3-pandas-lib:amd64 python3-pandas-lib 2.1.4+dfsg-8 install ok installed python3-paramiko python3-paramiko 3.4.0-1 install ok installed python3-parsl python3-parsl 2024.05.27+ds-1 install ok installed python3-parso python3-parso 0.8.3-1 install ok installed python3-pexpect python3-pexpect 4.9-2 install ok installed python3-pickleshare python3-pickleshare 0.7.5-5 install ok installed python3-pil:amd64 python3-pil 10.3.0-2 install ok installed python3-pil.imagetk:amd64 python3-pil.imagetk 10.3.0-2 install ok installed python3-pkg-resources python3-pkg-resources 68.1.2-2 install ok installed python3-platformdirs python3-platformdirs 4.2.1-1 install ok installed python3-prompt-toolkit python3-prompt-toolkit 3.0.47-1 install ok installed python3-psutil python3-psutil 5.9.8-2 install ok installed python3-ptyprocess python3-ptyprocess 0.7.0-5 install ok installed python3-public python3-public 4.1.0-1 install ok installed python3-pure-eval python3-pure-eval 0.2.2-2 install ok installed python3-py python3-py 1.11.0-2 install ok installed python3-pygments python3-pygments 2.18.0+dfsg-1 install ok installed python3-pyparsing python3-pyparsing 3.1.2-1 install ok installed python3-requests python3-requests 2.32.3+dfsg-1 install ok installed python3-scipy python3-scipy 1.12.0-2 install ok installed python3-seaborn python3-seaborn 0.13.2-3 install ok installed python3-setproctitle:amd64 python3-setproctitle 1.3.3-1+b2 install ok installed python3-setuptools python3-setuptools 68.1.2-2 install ok installed python3-six python3-six 1.16.0-6 install ok installed python3-skbio python3-skbio 0.5.9-4 install ok installed python3-sklearn python3-sklearn 1.4.2+dfsg-3 install ok installed python3-sklearn-lib:amd64 python3-sklearn-lib 1.4.2+dfsg-3 install ok installed python3-sqlalchemy python3-sqlalchemy 2.0.30+ds1-3 install ok installed python3-stack-data python3-stack-data 0.6.3-1 install ok installed python3-sympy python3-sympy 1.12.1-1 install ok installed python3-tblib python3-tblib 3.0.0-5 install ok installed python3-threadpoolctl python3-threadpoolctl 3.1.0-1 install ok installed python3-tk:amd64 python3-tk 3.12.3-3.1 install ok installed python3-tomlkit python3-tomlkit 0.12.5-1 install ok installed python3-traitlets python3-traitlets 5.14.3-1 install ok installed python3-typeguard python3-typeguard 4.1.5-1 install ok installed python3-typeshed python3-typeshed 0.0~git20231111.6764465-3 install ok installed python3-typing-extensions python3-typing-extensions 4.12.2-1 install ok installed python3-tz python3-tz 2024.1-2 install ok installed python3-tzlocal python3-tzlocal 5.2-1.1 install ok installed python3-ufolib2 python3-ufolib2 0.16.0+dfsg1-1 install ok installed python3-unicodedata2 python3-unicodedata2 15.1.0+ds-1+b1 install ok installed python3-urllib3 python3-urllib3 2.0.7-2 install ok installed python3-wcwidth python3-wcwidth 0.2.13+dfsg1-1 install ok installed python3-werkzeug python3-werkzeug 3.0.3-1 install ok installed python3-yaml python3-yaml 6.0.1-2 install ok installed python3-zmq python3-zmq 24.0.1-5+b1 install ok installed python3.12 python3.12 3.12.4-1 install ok installed python3.12-minimal python3.12-minimal 3.12.4-1 install ok installed python3.9 python3.9 3.9.2-1 install ok installed python3.9-minimal python3.9-minimal 3.9.2-1 install ok installed q2-quality-control q2-quality-control 2024.5.0-1 install ok installed q2-taxa q2-taxa 2024.5.0+dfsg-1 install ok installed q2-types q2-types 2024.5.0-1 install ok installed q2templates q2templates 2024.5.0+ds-1 install ok installed qiime qiime 2024.5.0-1 install ok installed r-base-core r-base-core 4.4.1-1 install ok installed r-bioc-biocgenerics r-bioc-biocgenerics 0.48.1-2 install ok installed r-bioc-decontam r-bioc-decontam 1.22.0+dfsg-2 install ok installed r-cran-cli r-cran-cli 3.6.2-1 install ok installed r-cran-colorspace r-cran-colorspace 2.1-0+dfsg-1 install ok installed r-cran-fansi r-cran-fansi 1.0.5-1 install ok installed r-cran-farver r-cran-farver 2.1.2-1 install ok installed r-cran-getopt r-cran-getopt 1.20.4-1 install ok installed r-cran-ggplot2 r-cran-ggplot2 3.5.1+dfsg-1 install ok installed r-cran-glue r-cran-glue 1.7.0-1 install ok installed r-cran-gtable r-cran-gtable 0.3.5+dfsg-1 install ok installed r-cran-isoband r-cran-isoband 0.2.7-1 install ok installed r-cran-labeling r-cran-labeling 0.4.3-1 install ok installed r-cran-lattice r-cran-lattice 0.22-6-1 install ok installed r-cran-lifecycle r-cran-lifecycle 1.0.4+dfsg-1 install ok installed r-cran-littler r-cran-littler 0.3.20-1 install ok installed r-cran-magrittr r-cran-magrittr 2.0.3-1 install ok installed r-cran-mass r-cran-mass 7.3-61-1 install ok installed r-cran-matrix r-cran-matrix 1.7-0-3 install ok installed r-cran-mgcv r-cran-mgcv 1.9-1-1 install ok installed r-cran-munsell r-cran-munsell 0.5.1-1 install ok installed r-cran-nlme r-cran-nlme 3.1.165-1 install ok installed r-cran-optparse r-cran-optparse 1.7.4-1 install ok installed r-cran-pillar r-cran-pillar 1.9.0+dfsg-1 install ok installed r-cran-pkgconfig r-cran-pkgconfig 2.0.3-2 install ok installed r-cran-pkgkitten r-cran-pkgkitten 0.2.3-1 install ok installed r-cran-plyr r-cran-plyr 1.8.9-1 install ok installed r-cran-r6 r-cran-r6 2.5.1-1 install ok installed r-cran-rcolorbrewer r-cran-rcolorbrewer 1.1-3-1 install ok installed r-cran-rcpp r-cran-rcpp 1.0.12-1 install ok installed r-cran-reshape2 r-cran-reshape2 1.4.4-2 install ok installed r-cran-rlang r-cran-rlang 1.1.4-1 install ok installed r-cran-scales r-cran-scales 1.3.0-1 install ok installed r-cran-stringi r-cran-stringi 1.8.3-1 install ok installed r-cran-stringr r-cran-stringr 1.5.1-1 install ok installed r-cran-tibble r-cran-tibble 3.2.1+dfsg-2 install ok installed r-cran-utf8 r-cran-utf8 1.2.4-1 install ok installed r-cran-vctrs r-cran-vctrs 0.6.5-1 install ok installed r-cran-viridislite r-cran-viridislite 0.4.2-2 install ok installed r-cran-withr r-cran-withr 3.0.0+dfsg-1 install ok installed readline-common readline-common 8.2-4 install ok installed samtools samtools 1.20-3 install ok installed sed sed 4.9-2 install ok installed sensible-utils sensible-utils 0.0.24 install ok installed sysvinit-utils sysvinit-utils 3.09-2 install ok installed tar tar 1.35+dfsg-3 install ok installed tk8.6-blt2.5 tk8.6-blt2.5 2.5.3+dfsg-7 install ok installed ttf-bitstream-vera ttf-bitstream-vera 1.10-8.2 install ok installed tzdata tzdata 2024a-4 install ok installed ucf ucf 3.0043+nmu1 install ok installed unicode-data unicode-data 15.1.0-1 install ok installed unzip unzip 6.0-28 install ok installed util-linux util-linux 2.40.1-9 install ok installed vsearch vsearch 2.28.1-2 install ok installed x11-common x11-common 1:7.7+23 install ok installed xdg-utils xdg-utils 1.1.3-4.1 install ok installed zip zip 3.0-13 install ok installed zlib1g:amd64 zlib1g 1:1.3.dfsg+really1.3.1-1 4m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 4m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-get', 'remove', 'blt', 'bowtie2', 'ca-certificates', 'cython3', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-glyphicons-halflings', 'fonts-lyx', 'javascript-common', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcares2:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1t64:amd64', 'libhdf5-hl-100t64:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libice6:amd64', 'libicu67:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-popper.js', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblmdb0:amd64', 'liblzf1:amd64', 'libmbedcrypto3:amd64', 'libmbedcrypto7t64:amd64', 'libmbedtls12:amd64', 'libmbedtls14t64:amd64', 'libmbedx509-0:amd64', 'libmbedx509-1t64:amd64', 'libmpdec3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnode115:amd64', 'libnorm1t64:amd64', 'libopenblas-base:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libperl5.32:amd64', 'libperl5.38t64:amd64', 'libpgm-5.3-0t64:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libprocps8:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libssw0:amd64', 'libsz2:amd64', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtiff6:amd64', 'libtk8.6:amd64', 'libuv1t64:amd64', 'libwebp6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyajl2:amd64', 'libyaml-0-2:amd64', 'libzmq5:amd64', 'littler', 'mailcap', 'media-types', 'mime-support', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'node-acorn', 'node-cjs-module-lexer', 'node-d3-color', 'node-d3-interpolate', 'node-d3-scale-chromatic', 'node-fortawesome-fontawesome-free', 'node-natural-sort', 'node-normalize.css', 'node-thenby', 'node-undici', 'node-xtend', 'nodejs', 'openssl', 'perl', 'perl-modules-5.32', 'perl-modules-5.38', 'procps', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-asttokens', 'python3-attr', 'python3-backcall', 'python3-bcrypt', 'python3-bibtexparser', 'python3-biom-format', 'python3-blinker', 'python3-brotli', 'python3-cachecontrol', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-contourpy', 'python3-cryptography', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dill', 'python3-distutils', 'python3-executing', 'python3-filelock', 'python3-flask', 'python3-flask-sqlalchemy', 'python3-flufl.lock', 'python3-fonttools', 'python3-fs', 'python3-future', 'python3-globus-sdk', 'python3-greenlet', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-ijson', 'python3-ipython', 'python3-ipython-genutils', 'python3-itsdangerous', 'python3-jedi', 'python3-jinja2', 'python3-joblib', 'python3-jwt', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-mpmath', 'python3-msgpack', 'python3-nacl', 'python3-natsort', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-paramiko', 'python3-parsl', 'python3-parso', 'python3-pexpect', 'python3-pickleshare', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-platformdirs', 'python3-prompt-toolkit', 'python3-psutil', 'python3-ptyprocess', 'python3-public', 'python3-pure-eval', 'python3-py', 'python3-pygments', 'python3-pyparsing', 'python3-requests', 'python3-scipy', 'python3-seaborn', 'python3-setproctitle:amd64', 'python3-setuptools', 'python3-six', 'python3-skbio', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-sqlalchemy', 'python3-stack-data', 'python3-sympy', 'python3-tblib', 'python3-threadpoolctl', 'python3-tk:amd64', 'python3-tomlkit', 'python3-traitlets', 'python3-typeguard', 'python3-typeshed', 'python3-typing-extensions', 'python3-tz', 'python3-tzlocal', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wcwidth', 'python3-werkzeug', 'python3-yaml', 'python3-zmq', 'python3.12', 'python3.12-minimal', 'python3.9', 'python3.9-minimal', 'q2-taxa', 'q2-types', 'q2templates', 'qiime', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-decontam', 'r-cran-cli', 'r-cran-colorspace', 'r-cran-fansi', 'r-cran-farver', 'r-cran-getopt', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-isoband', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-optparse', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-scales', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'readline-common', 'samtools', 'sensible-utils', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'unicode-data', 'unzip', 'vsearch', 'x11-common', 'xdg-utils', 'zip', 'q2-quality-control'] 4m33.5s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: blt bowtie2 ca-certificates cython3 fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-glyphicons-halflings fonts-lyx javascript-common libaec0 libblas3 libbrotli1 libcairo2 libcares2 libcurl3t64-gnutls libcurl4t64 libdatrie1 libdeflate0 libexpat1 libfontconfig1 libfreetype6 libfribidi0 libgdbm-compat4t64 libgdbm6t64 libgfortran5 libglib2.0-0t64 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libhts3t64 libhtscodecs2 libice6 libicu67 libicu72 libimagequant0 libjbig0 libjpeg62-turbo libjs-bootstrap libjs-jquery libjs-jquery-ui libjs-popper.js liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 libldap-2.5-0 liblerc4 liblmdb0 liblzf1 libmbedcrypto3 libmbedcrypto7t64 libmbedtls12 libmbedtls14t64 libmbedx509-0 libmbedx509-1t64 libmpdec3 libncurses6 libncursesw6 libnghttp2-14 libnode115 libnorm1t64 libopenblas-base libopenblas0 libopenblas0-pthread libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libperl5.32 libperl5.38t64 libpgm-5.3-0t64 libpixman-1-0 libpng16-16t64 libproc2-0 libprocps8 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libpython3.9-minimal libpython3.9-stdlib libqhull-r8.0 libquadmath0 libraqm0 libreadline8t64 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libsodium23 libsqlite3-0 libssh2-1t64 libssw0 libsz2 libtbb2 libtcl8.6 libthai-data libthai0 libtiff5 libtiff6 libtk8.6 libuv1t64 libwebp6 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 libxt6t64 libyajl2 libyaml-0-2 libzmq5 littler mailcap media-types mime-support ncbi-blast+ ncbi-data netbase node-acorn node-cjs-module-lexer node-d3-color node-d3-interpolate node-d3-scale-chromatic node-fortawesome-fontawesome-free node-natural-sort node-normalize.css node-thenby node-undici node-xtend nodejs openssl perl perl-modules-5.32 perl-modules-5.38 procps python-matplotlib-data python3 python3-appdirs python3-asttokens python3-attr python3-backcall python3-bcrypt python3-bibtexparser python3-biom-format python3-blinker python3-brotli python3-cachecontrol python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-click python3-colorama python3-contourpy python3-cryptography python3-cycler python3-dateutil python3-decorator python3-dill python3-distutils python3-executing python3-filelock python3-flask python3-flask-sqlalchemy python3-flufl.lock python3-fonttools python3-fs python3-future python3-globus-sdk python3-greenlet python3-h5py python3-h5py-serial python3-hdmedians python3-idna python3-ijson python3-ipython python3-ipython-genutils python3-itsdangerous python3-jedi python3-jinja2 python3-joblib python3-jwt python3-kiwisolver python3-lib2to3 python3-lockfile python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-matplotlib-inline python3-minimal python3-mpmath python3-msgpack python3-nacl python3-natsort python3-networkx python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-paramiko python3-parsl python3-parso python3-pexpect python3-pickleshare python3-pil python3-pil.imagetk python3-pkg-resources python3-platformdirs python3-prompt-toolkit python3-psutil python3-ptyprocess python3-public python3-pure-eval python3-py python3-pygments python3-pyparsing python3-requests python3-scipy python3-seaborn python3-setproctitle python3-setuptools python3-six python3-skbio python3-sklearn python3-sklearn-lib python3-sqlalchemy python3-stack-data python3-sympy python3-tblib python3-threadpoolctl python3-tk python3-tomlkit python3-traitlets python3-typeguard python3-typeshed python3-typing-extensions python3-tz python3-tzlocal python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-wcwidth python3-werkzeug python3-yaml python3-zmq python3.12 python3.12-minimal python3.9 python3.9-minimal q2-quality-control q2-taxa q2-types q2templates qiime r-base-core r-bioc-biocgenerics r-bioc-decontam r-cran-cli r-cran-colorspace r-cran-fansi r-cran-farver r-cran-getopt r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-isoband r-cran-labeling r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-optparse r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-reshape2 r-cran-rlang r-cran-scales r-cran-stringi r-cran-stringr r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr readline-common samtools sensible-utils tk8.6-blt2.5 ttf-bitstream-vera ucf unicode-data unzip vsearch x11-common xdg-utils zip 0 upgraded, 0 newly installed, 326 to remove and 0 not upgraded. After this operation, 1256 MB disk space will be freed. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 48968 files and directories currently installed.) Removing q2-quality-control (2024.5.0-1) ... Removing python3-seaborn (0.13.2-3) ... Removing q2-taxa (2024.5.0+dfsg-1) ... Removing q2-types (2024.5.0-1) ... Removing python3-skbio (0.5.9-4) ... Removing python3-matplotlib (3.6.3-2) ... Removing python3-pil.imagetk:amd64 (10.3.0-2) ... Removing python3-pil:amd64 (10.3.0-2) ... Removing python3-tk:amd64 (3.12.3-3.1) ... Removing blt (2.5.3+dfsg-7) ... Removing bowtie2 (2.5.3-1) ... Removing qiime (2024.5.0-1) ... Removing python3-parsl (2024.05.27+ds-1) ... Removing r-bioc-decontam (1.22.0+dfsg-2) ... Removing r-cran-ggplot2 (3.5.1+dfsg-1) ... Removing r-cran-mgcv (1.9-1-1) ... Removing r-cran-matrix (1.7-0-3) ... Removing r-cran-reshape2 (1.4.4-2) ... Removing cython3 (3.0.10+dfsg-5) ... Removing tk8.6-blt2.5 (2.5.3+dfsg-7) ... Removing python-matplotlib-data (3.6.3-2) ... Removing q2templates (2024.5.0+ds-1) ... Removing libjs-bootstrap (3.4.1+dfsg-3) ... Removing fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Removing fonts-lyx (2.4.0-1) ... Removing libjs-popper.js (1.16.1+ds-6) ... Removing javascript-common (11+nmu1) ... Removing python3-biom-format (2.1.16-1) ... Removing python3-h5py (3.11.0-2) ... Removing python3-h5py-serial (3.11.0-2) ... Removing libhdf5-hl-100t64:amd64 (1.10.10+repack-3.3) ... Removing libhdf5-103-1t64:amd64 (1.10.10+repack-3.3) ... Removing libsz2:amd64 (1.1.3-1) ... Removing libaec0:amd64 (1.1.3-1) ... Removing python3-sklearn (1.4.2+dfsg-3) ... Removing python3-sklearn-lib:amd64 (1.4.2+dfsg-3) ... Removing python3-pandas (2.1.4+dfsg-8) ... Removing python3-pandas-lib:amd64 (2.1.4+dfsg-8) ... Removing python3-hdmedians (0.14.2-5.1) ... Removing liblapack3:amd64 (3.12.0-3) ... Removing libblas3:amd64 (3.12.0-3) ... Removing libraqm0:amd64 (0.10.1-1+b1) ... Removing samtools (1.20-3) ... Removing libhts3t64:amd64 (1.20+ds-1) ... Removing libcurl3t64-gnutls:amd64 (8.8.0-1) ... Removing libtiff5:amd64 (4.2.0-1+deb11u5) ... Removing python3.9 (3.9.2-1) ... Removing python3.9-minimal (3.9.2-1) ... Removing python3-zmq (24.0.1-5+b1) ... Removing python3-ipython (8.20.0-1) ... Removing python3-setuptools (68.1.2-2) ... Removing python3-distutils (3.12.3-3.1) ... Removing python3-flask-sqlalchemy (3.1.1-2) ... Removing python3-sqlalchemy (2.0.30+ds1-3) ... Removing libpython3.9-stdlib:amd64 (3.9.2-1) ... Removing mime-support (3.66) ... Removing mailcap (3.72) ... Removing ncbi-blast+ (2.12.0+ds-4+b1) ... Removing perl (5.38.2-5) ... Removing libperl5.38t64:amd64 (5.38.2-5) ... Removing libperl5.32:amd64 (5.32.1-4+deb11u3) ... Removing libgdbm-compat4t64:amd64 (1.23-6) ... Removing libgdbm6t64:amd64 (1.23-6) ... Removing libopenblas-base:amd64 (0.3.13+ds-3+deb11u1) ... Removing libopenblas0:amd64 (0.3.27+ds-2) ... Removing libimagequant0:amd64 (2.18.0-1+b1) ... Removing libhtscodecs2:amd64 (1.6.0-1+b1) ... Removing libicu67:amd64 (67.1-7) ... Removing r-cran-stringr (1.5.1-1) ... Removing r-cran-stringi (1.8.3-1) ... Removing python3-flask (3.0.3-1) ... Removing python3-werkzeug (3.0.3-1) ... Removing libjs-jquery-ui (1.13.2+dfsg-1) ... Removing libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Removing liblcms2-2:amd64 (2.14-2+b1) ... Removing libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Removing liblmdb0:amd64 (0.9.31-1+b1) ... Removing liblzf1:amd64 (3.6-4+b1) ... Removing libmbedtls12:amd64 (2.16.9-0.1) ... Removing libmbedx509-0:amd64 (2.16.9-0.1) ... Removing libmbedcrypto3:amd64 (2.16.9-0.1) ... Removing libmbedtls14t64:amd64 (2.28.8-1) ... Removing libmbedx509-1t64:amd64 (2.28.8-1) ... Removing libmbedcrypto7t64:amd64 (2.28.8-1) ... Removing libmpdec3:amd64 (2.5.1-1) ... Removing libncurses6:amd64 (6.5-2) ... Removing python3-joblib (1.3.2-2) ... Removing procps (2:4.0.4-4) ... Removing libzmq5:amd64 (4.3.5-1+b2) ... Removing libnorm1t64:amd64 (1.5.9+dfsg-3.1) ... Removing libopenjp2-7:amd64 (2.5.0-2+b3) ... Removing libpgm-5.3-0t64:amd64 (5.3.128~dfsg-2.1) ... Removing libproc2-0:amd64 (2:4.0.4-4) ... Removing libprocps8:amd64 (2:3.3.17-5) ... Removing libpython3.9-minimal:amd64 (3.9.2-1) ... Removing libqhull-r8.0:amd64 (2020.2-6+b1) ... Removing libquadmath0:amd64 (14.1.0-2) ... Removing libwebpmux3:amd64 (1.4.0-0.1) ... Removing libwebpdemux2:amd64 (1.4.0-0.1) ... Removing python3-paramiko (3.4.0-1) ... Removing python3-nacl (1.5.0-4) ... Removing libsodium23:amd64 (1.0.18-1+b1) ... Removing libssw0:amd64 (1.1-14+b1) ... Removing libtbb2:amd64 (2020.3-1) ... Removing libwebp6:amd64 (0.6.1-2.1+deb11u2) ... Removing python3-ijson (3.3.0-1+b1) ... Removing libyajl2:amd64 (2.1.0-5+b1) ... Removing python3-yaml (6.0.1-2) ... Removing libyaml-0-2:amd64 (0.2.5-1+b1) ... Removing littler (0.3.20-1) ... Removing ncbi-data (6.1.20170106+dfsg2-2) ... Removing node-d3-scale-chromatic (1.5.0+~1.5.1-1) ... Removing node-d3-interpolate (1.4.0+~1.4.2-1) ... Removing node-d3-color (1.4.1+~1.4.2-1) ... Removing node-fortawesome-fontawesome-free (6.4.2+ds1-1) ... Removing node-natural-sort (1.0.0-5) ... Removing node-normalize.css (8.0.1-5) ... Removing node-thenby (1.3.4+git20200720.0fd165a+ds-5) ... Removing perl-modules-5.32 (5.32.1-4+deb11u3) ... Removing perl-modules-5.38 (5.38.2-5) ... Removing python3-stack-data (0.6.3-1) ... Removing python3-executing (2.0.1-0.1) ... Removing python3-asttokens (2.4.1-1) ... Removing python3-backcall (0.2.0-4) ... Removing python3-bcrypt (3.2.2-1) ... Removing python3-bibtexparser (2.0.0b5+really1.4.1-1) ... Removing python3-blinker (1.8.2-1) ... Removing python3-cachecontrol (0.14.0-1) ... Removing python3-globus-sdk (3.41.0-1) ... Removing python3-cryptography (42.0.5-2) ... Removing python3-cffi-backend:amd64 (1.16.0-2+b2) ... Removing python3-click (8.1.7-1) ... Removing python3-colorama (0.4.6-4) ... Removing python3-contourpy (1.0.7-3) ... Removing python3-cycler (0.12.1-1) ... Removing python3-dateutil (2.9.0-2) ... Removing python3-dill (0.3.8-1) ... Removing python3-filelock (3.14.0-1) ... Removing python3-flufl.lock (8.1.0-1) ... Removing python3-future (0.18.2-5) ... Removing python3-greenlet (3.0.1-3) ... Removing python3-ipython-genutils (0.2.0-6) ... Removing python3-itsdangerous (2.2.0-1) ... Removing python3-jedi (0.19.1+ds1-1) ... Removing python3-jinja2 (3.1.3-1) ... Removing python3-jwt (2.7.0-1) ... Removing python3-kiwisolver (1.4.5-1) ... Removing python3-lib2to3 (3.12.3-3.1) ... Removing python3-lockfile (1:0.12.2-3) ... Removing python3-markupsafe (2.1.5-1) ... Removing python3-matplotlib-inline (0.1.6-2) ... Removing python3-msgpack (1.0.3-3+b1) ... Removing python3-natsort (8.0.2-2) ... Removing python3-networkx (3.2.1-4) ... Removing python3-packaging (24.0-1) ... Removing python3-parso (0.8.3-1) ... Removing python3-pexpect (4.9-2) ... Removing python3-pickleshare (0.7.5-5) ... Removing python3-py (1.11.0-2) ... Removing python3-pygments (2.18.0+dfsg-1) ... Removing python3-platformdirs (4.2.1-1) ... Removing python3-prompt-toolkit (3.0.47-1) ... Removing python3-psutil (5.9.8-2) ... Removing python3-ptyprocess (0.7.0-5) ... Removing python3-public (4.1.0-1) ... Removing python3-pure-eval (0.2.2-2) ... Removing python3-pyparsing (3.1.2-1) ... Removing python3-setproctitle:amd64 (1.3.3-1+b2) ... Removing python3-tblib (3.0.0-5) ... Removing python3-threadpoolctl (3.1.0-1) ... Removing python3-tomlkit (0.12.5-1) ... Removing python3-traitlets (5.14.3-1) ... Removing python3-typeguard (4.1.5-1) ... Removing python3-typeshed (0.0~git20231111.6764465-3) ... Removing python3-typing-extensions (4.12.2-1) ... Removing python3-tzlocal (5.2-1.1) ... Removing python3-wcwidth (0.2.13+dfsg1-1) ... Removing r-bioc-biocgenerics (0.48.1-2) ... Removing r-cran-tibble (3.2.1+dfsg-2) ... Removing r-cran-pillar (1.9.0+dfsg-1) ... Removing r-cran-vctrs (0.6.5-1) ... Removing r-cran-scales (1.3.0-1) ... Removing r-cran-munsell (0.5.1-1) ... Removing r-cran-colorspace (2.1-0+dfsg-1) ... Removing r-cran-fansi (1.0.5-1) ... Removing r-cran-farver (2.1.2-1) ... Removing r-cran-optparse (1.7.4-1) ... Removing r-cran-getopt (1.20.4-1) ... Removing r-cran-gtable (0.3.5+dfsg-1) ... Removing r-cran-lifecycle (1.0.4+dfsg-1) ... Removing r-cran-glue (1.7.0-1) ... Removing r-cran-isoband (0.2.7-1) ... Removing r-cran-labeling (0.4.3-1) ... Removing r-cran-nlme (3.1.165-1) ... Removing r-cran-lattice (0.22-6-1) ... Removing r-cran-magrittr (2.0.3-1) ... Removing r-cran-mass (7.3-61-1) ... Removing r-cran-pkgconfig (2.0.3-2) ... Removing r-cran-plyr (1.8.9-1) ... Removing r-cran-r6 (2.5.1-1) ... Removing r-cran-rcolorbrewer (1.1-3-1) ... Removing r-cran-rlang (1.1.4-1) ... Removing r-cran-utf8 (1.2.4-1) ... Removing r-cran-viridislite (0.4.2-2) ... Removing r-cran-withr (3.0.0+dfsg-1) ... Removing ttf-bitstream-vera (1.10-8.2) ... Removing vsearch (2.28.1-2) ... Removing python3-requests (2.32.3+dfsg-1) ... Removing r-cran-rcpp (1.0.12-1) ... Removing python3-certifi (2024.6.2-1) ... Removing python3-chardet (5.2.0+dfsg-1) ... Removing python3-charset-normalizer (3.3.2-1) ... Removing python3-idna (3.6-2.1) ... Removing python3-urllib3 (2.0.7-2) ... Removing r-cran-cli (3.6.2-1) ... Removing r-cran-littler (0.3.20-1) ... Removing r-cran-pkgkitten (0.2.3-1) ... Removing r-base-core (4.4.1-1) ... Removing ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libpangocairo-1.0-0:amd64 (1.54.0+ds-1) ... Removing libpangoft2-1.0-0:amd64 (1.54.0+ds-1) ... Removing libpango-1.0-0:amd64 (1.54.0+ds-1) ... Removing fontconfig (2.15.0-1.1) ... Removing libtk8.6:amd64 (8.6.14-1) ... Removing libxft2:amd64 (2.3.6-1+b1) ... Removing libcairo2:amd64 (1.18.0-3+b1) ... Removing libfontconfig1:amd64 (2.15.0-1.1) ... Removing fontconfig-config (2.15.0-1.1) ... Removing fonts-dejavu-core (2.37-8) ... Removing fonts-dejavu-mono (2.37-8) ... Removing libcurl4t64:amd64 (8.8.0-1) ... Removing libthai0:amd64 (0.1.29-2) ... Removing libdatrie1:amd64 (0.2.13-3) ... Removing libtiff6:amd64 (4.5.1+git230720-4) ... Removing libdeflate0:amd64 (1.20-1) ... Removing libfribidi0:amd64 (1.0.13-3+b1) ... Removing libharfbuzz0b:amd64 (8.3.0-2+b1) ... Removing libglib2.0-0t64:amd64 (2.80.3-1) ... Removing libgomp1:amd64 (14.1.0-2) ... Removing libgraphite2-3:amd64 (1.3.14-2) ... Removing libxt6t64:amd64 (1:1.2.1-1.2) ... Removing libsm6:amd64 (2:1.2.3-1+b1) ... Removing libice6:amd64 (2:1.0.10-1+b1) ... Removing libjbig0:amd64 (2.1-6.1+b1) ... Removing libjpeg62-turbo:amd64 (1:2.1.5-3) ... Removing libldap-2.5-0:amd64 (2.5.18+dfsg-1) ... Removing liblerc4:amd64 (4.0.0+ds-4+b1) ... Removing libpaper-utils (1.1.29+b1) ... Removing libpaper1:amd64 (1.1.29+b1) ... Removing libpixman-1-0:amd64 (0.42.2-1+b1) ... Removing libpsl5t64:amd64 (0.21.2-1.1) ... Removing librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Removing libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Removing libsasl2-modules-db:amd64 (2.1.28+dfsg1-6) ... Removing libwebp7:amd64 (1.4.0-0.1) ... Removing libsharpyuv0:amd64 (1.4.0-0.1) ... Removing libssh2-1t64:amd64 (1.11.0-5) ... Removing libtcl8.6:amd64 (8.6.14+dfsg-1) ... Removing libthai-data (0.1.29-2) ... Removing libxss1:amd64 (1:1.2.3-1+b1) ... Removing libxrender1:amd64 (1:0.9.10-1.1+b1) ... Removing libxcb-shm0:amd64 (1.17.0-2) ... Removing libxcb-render0:amd64 (1.17.0-2) ... Removing libxext6:amd64 (2:1.3.4-1+b1) ... Removing openssl (3.2.2-1) ... Removing ucf (3.0043+nmu1) ... Removing sensible-utils (0.0.24) ... Removing unzip (6.0-28) ... Removing x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of stop. Removing xdg-utils (1.1.3-4.1) ... Removing zip (3.0-13) ... Removing libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Removing libpng16-16t64:amd64 (1.6.43-5) ... Removing libx11-6:amd64 (2:1.8.7-1+b1) ... Removing libx11-data (2:1.8.7-1) ... Removing libxcb1:amd64 (1.17.0-2) ... Removing libxau6:amd64 (1:1.0.9-1+b1) ... Removing libxdmcp6:amd64 (1:1.1.2-3+b1) ... Removing python3-fonttools (4.46.0-1) ... Removing python3-scipy (1.12.0-2) ... Removing python3-numpy (1:1.26.4+ds-10) ... Removing liblbfgsb0:amd64 (3.0+dfsg.4-1+b1) ... Removing nodejs (20.15.0+dfsg-1) ... Removing libnode115:amd64 (20.15.0+dfsg-1) ... Removing node-acorn (8.8.1+ds+~cs25.17.7-2) ... Removing libbrotli1:amd64 (1.1.0-2+b3) ... Removing libcares2:amd64 (1.31.0-1) ... Removing libopenblas0-pthread:amd64 (0.3.27+ds-2) ... Removing libgfortran5:amd64 (14.1.0-2) ... Removing python3-lxml:amd64 (5.2.1-1) ... Removing libnghttp2-14:amd64 (1.62.1-1) ... Removing libuv1t64:amd64 (1.48.0-5) ... Removing libxslt1.1:amd64 (1.1.35-1+b1) ... Removing node-cjs-module-lexer (1.2.3+dfsg-1) ... Removing node-undici (5.28.4+dfsg1+~cs23.12.11-2) ... Removing node-xtend (4.0.2-3) ... Removing python3-fs (2.4.16-4) ... Removing python3-appdirs (1.4.4-4) ... Removing python3-brotli (1.1.0-2+b3) ... Removing python3-decorator (5.1.1-5) ... Removing python3-lz4 (4.0.2+dfsg-1+b3) ... Removing python3-sympy (1.12.1-1) ... Removing python3-mpmath (1.3.0-1) ... Removing python3-pkg-resources (68.1.2-2) ... Removing python3-six (1.16.0-6) ... Removing python3-tz (2024.1-2) ... Removing python3-unicodedata2 (15.1.0+ds-1+b1) ... Removing unicode-data (15.1.0-1) ... Removing python3-ufolib2 (0.16.0+dfsg1-1) ... Removing libxml2:amd64 (2.12.7+dfsg-3) ... Removing libicu72:amd64 (72.1-4+b1) ... Removing python3-attr (23.2.0-2) ... Removing python3 (3.12.2-1) ... Removing python3.12 (3.12.4-1) ... Removing libpython3-stdlib:amd64 (3.12.2-1) ... Removing libpython3.12-stdlib:amd64 (3.12.4-1) ... find: '/usr/lib/python3': No such file or directory Removing libncursesw6:amd64 (6.5-2) ... Removing python3-minimal (3.12.2-1) ... Removing libreadline8t64:amd64 (8.2-4) ... Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Removing 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Removing libsqlite3-0:amd64 (3.46.0-1) ... Removing media-types (10.1.0) ... Removing netbase (6.4) ... Removing readline-common (8.2-4) ... Removing python3.12-minimal (3.12.4-1) ... Removing libexpat1:amd64 (2.6.2-1) ... Removing libpython3.12-minimal:amd64 (3.12.4-1) ... find: '/usr/lib/python3': No such file or directory Processing triggers for libc-bin (2.38-13) ... 4m33.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-get', 'remove', 'blt', 'bowtie2', 'ca-certificates', 'cython3', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-glyphicons-halflings', 'fonts-lyx', 'javascript-common', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcares2:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1t64:amd64', 'libhdf5-hl-100t64:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libice6:amd64', 'libicu67:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-popper.js', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblmdb0:amd64', 'liblzf1:amd64', 'libmbedcrypto3:amd64', 'libmbedcrypto7t64:amd64', 'libmbedtls12:amd64', 'libmbedtls14t64:amd64', 'libmbedx509-0:amd64', 'libmbedx509-1t64:amd64', 'libmpdec3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnode115:amd64', 'libnorm1t64:amd64', 'libopenblas-base:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libperl5.32:amd64', 'libperl5.38t64:amd64', 'libpgm-5.3-0t64:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libprocps8:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libssw0:amd64', 'libsz2:amd64', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtiff6:amd64', 'libtk8.6:amd64', 'libuv1t64:amd64', 'libwebp6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyajl2:amd64', 'libyaml-0-2:amd64', 'libzmq5:amd64', 'littler', 'mailcap', 'media-types', 'mime-support', 'ncbi-blast+-', 'ncbi-data', 'netbase', 'node-acorn', 'node-cjs-module-lexer', 'node-d3-color', 'node-d3-interpolate', 'node-d3-scale-chromatic', 'node-fortawesome-fontawesome-free', 'node-natural-sort', 'node-normalize.css', 'node-thenby', 'node-undici', 'node-xtend', 'nodejs', 'openssl', 'perl', 'perl-modules-5.32', 'perl-modules-5.38', 'procps', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-asttokens', 'python3-attr', 'python3-backcall', 'python3-bcrypt', 'python3-bibtexparser', 'python3-biom-format', 'python3-blinker', 'python3-brotli', 'python3-cachecontrol', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-contourpy', 'python3-cryptography', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dill', 'python3-distutils', 'python3-executing', 'python3-filelock', 'python3-flask', 'python3-flask-sqlalchemy', 'python3-flufl.lock', 'python3-fonttools', 'python3-fs', 'python3-future', 'python3-globus-sdk', 'python3-greenlet', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-ijson', 'python3-ipython', 'python3-ipython-genutils', 'python3-itsdangerous', 'python3-jedi', 'python3-jinja2', 'python3-joblib', 'python3-jwt', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-mpmath', 'python3-msgpack', 'python3-nacl', 'python3-natsort', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-paramiko', 'python3-parsl', 'python3-parso', 'python3-pexpect', 'python3-pickleshare', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-platformdirs', 'python3-prompt-toolkit', 'python3-psutil', 'python3-ptyprocess', 'python3-public', 'python3-pure-eval', 'python3-py', 'python3-pygments', 'python3-pyparsing', 'python3-requests', 'python3-scipy', 'python3-seaborn', 'python3-setproctitle:amd64', 'python3-setuptools', 'python3-six', 'python3-skbio', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-sqlalchemy', 'python3-stack-data', 'python3-sympy', 'python3-tblib', 'python3-threadpoolctl', 'python3-tk:amd64', 'python3-tomlkit', 'python3-traitlets', 'python3-typeguard', 'python3-typeshed', 'python3-typing-extensions', 'python3-tz', 'python3-tzlocal', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wcwidth', 'python3-werkzeug', 'python3-yaml', 'python3-zmq', 'python3.12', 'python3.12-minimal', 'python3.9', 'python3.9-minimal', 'q2-taxa', 'q2-types', 'q2templates', 'qiime', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-decontam', 'r-cran-cli', 'r-cran-colorspace', 'r-cran-fansi', 'r-cran-farver', 'r-cran-getopt', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-isoband', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-optparse', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-scales', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'readline-common', 'samtools', 'sensible-utils', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'unicode-data', 'unzip', 'vsearch', 'x11-common', 'xdg-utils', 'zip', 'q2-quality-control'] 4m33.5s INFO: Running scripts post_remove 4m33.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_remove_exceptions'] 4m33.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_remove_exceptions'] 4m33.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'dpkg', '--purge', 'blt', 'bowtie2', 'ca-certificates', 'cython3', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-glyphicons-halflings', 'fonts-lyx', 'javascript-common', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcares2:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1t64:amd64', 'libhdf5-hl-100t64:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libice6:amd64', 'libicu67:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-popper.js', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblmdb0:amd64', 'liblzf1:amd64', 'libmbedcrypto3:amd64', 'libmbedcrypto7t64:amd64', 'libmbedtls12:amd64', 'libmbedtls14t64:amd64', 'libmbedx509-0:amd64', 'libmbedx509-1t64:amd64', 'libmpdec3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnode115:amd64', 'libnorm1t64:amd64', 'libopenblas-base:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libperl5.32:amd64', 'libperl5.38t64:amd64', 'libpgm-5.3-0t64:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libprocps8:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libssw0:amd64', 'libsz2:amd64', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtiff6:amd64', 'libtk8.6:amd64', 'libuv1t64:amd64', 'libwebp6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyajl2:amd64', 'libyaml-0-2:amd64', 'libzmq5:amd64', 'littler', 'mailcap', 'media-types', 'mime-support', 'ncbi-blast+', 'ncbi-data', 'netbase', 'node-acorn', 'node-cjs-module-lexer', 'node-d3-color', 'node-d3-interpolate', 'node-d3-scale-chromatic', 'node-fortawesome-fontawesome-free', 'node-natural-sort', 'node-normalize.css', 'node-thenby', 'node-undici', 'node-xtend', 'nodejs', 'openssl', 'perl', 'perl-modules-5.32', 'perl-modules-5.38', 'procps', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-asttokens', 'python3-attr', 'python3-backcall', 'python3-bcrypt', 'python3-bibtexparser', 'python3-biom-format', 'python3-blinker', 'python3-brotli', 'python3-cachecontrol', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-contourpy', 'python3-cryptography', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dill', 'python3-distutils', 'python3-executing', 'python3-filelock', 'python3-flask', 'python3-flask-sqlalchemy', 'python3-flufl.lock', 'python3-fonttools', 'python3-fs', 'python3-future', 'python3-globus-sdk', 'python3-greenlet', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-ijson', 'python3-ipython', 'python3-ipython-genutils', 'python3-itsdangerous', 'python3-jedi', 'python3-jinja2', 'python3-joblib', 'python3-jwt', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-mpmath', 'python3-msgpack', 'python3-nacl', 'python3-natsort', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-paramiko', 'python3-parsl', 'python3-parso', 'python3-pexpect', 'python3-pickleshare', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-platformdirs', 'python3-prompt-toolkit', 'python3-psutil', 'python3-ptyprocess', 'python3-public', 'python3-pure-eval', 'python3-py', 'python3-pygments', 'python3-pyparsing', 'python3-requests', 'python3-scipy', 'python3-seaborn', 'python3-setproctitle:amd64', 'python3-setuptools', 'python3-six', 'python3-skbio', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-sqlalchemy', 'python3-stack-data', 'python3-sympy', 'python3-tblib', 'python3-threadpoolctl', 'python3-tk:amd64', 'python3-tomlkit', 'python3-traitlets', 'python3-typeguard', 'python3-typeshed', 'python3-typing-extensions', 'python3-tz', 'python3-tzlocal', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wcwidth', 'python3-werkzeug', 'python3-yaml', 'python3-zmq', 'python3.12', 'python3.12-minimal', 'python3.9', 'python3.9-minimal', 'q2-taxa', 'q2-types', 'q2templates', 'qiime', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-decontam', 'r-cran-cli', 'r-cran-colorspace', 'r-cran-fansi', 'r-cran-farver', 'r-cran-getopt', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-isoband', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-optparse', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-scales', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'readline-common', 'samtools', 'sensible-utils', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'unicode-data', 'unzip', 'vsearch', 'x11-common', 'xdg-utils', 'zip'] 4m34.4s DUMP: dpkg: warning: ignoring request to remove blt which isn't installed dpkg: warning: ignoring request to remove bowtie2 which isn't installed (Reading database ... 5449 files and directories currently installed.) Purging configuration files for ca-certificates (20240203) ... Removing dangling symlinks from /etc/ssl/certs... done. dpkg: warning: ignoring request to remove cython3 which isn't installed Purging configuration files for fontconfig (2.15.0-1.1) ... Purging configuration files for fontconfig-config (2.15.0-1.1) ... dpkg: warning: while removing fontconfig-config, directory '/etc/fonts/conf.d' not empty so not removed Purging configuration files for fonts-dejavu-core (2.37-8) ... 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dpkg: warning: ignoring request to remove libpython3.12-stdlib which isn't installed Purging configuration files for libpython3.9-minimal:amd64 (3.9.2-1) ... dpkg: warning: ignoring request to remove libpython3.9-stdlib which isn't installed dpkg: warning: ignoring request to remove libqhull-r8.0 which isn't installed dpkg: warning: ignoring request to remove libquadmath0 which isn't installed dpkg: warning: ignoring request to remove libraqm0 which isn't installed Purging configuration files for libreadline8t64:amd64 (8.2-4) ... dpkg: warning: ignoring request to remove librtmp1 which isn't installed dpkg: warning: ignoring request to remove libsasl2-2 which isn't installed dpkg: warning: ignoring request to remove libsasl2-modules-db which isn't installed dpkg: warning: ignoring request to remove libsharpyuv0 which isn't installed dpkg: warning: ignoring request to remove libsm6 which isn't installed dpkg: warning: ignoring request to remove libsodium23 which isn't installed dpkg: 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Purging configuration files for python3 (3.12.2-1) ... dpkg: warning: ignoring request to remove python3-appdirs which isn't installed dpkg: warning: ignoring request to remove python3-asttokens which isn't installed dpkg: warning: ignoring request to remove python3-attr which isn't installed dpkg: warning: ignoring request to remove python3-backcall which isn't installed dpkg: warning: ignoring request to remove python3-bcrypt which isn't installed dpkg: warning: ignoring request to remove python3-bibtexparser which isn't installed dpkg: warning: ignoring request to remove python3-biom-format which isn't installed dpkg: warning: ignoring request to remove python3-blinker which isn't installed dpkg: warning: ignoring request to remove python3-brotli which isn't installed dpkg: warning: ignoring request to remove python3-cachecontrol which isn't installed dpkg: warning: ignoring request to remove python3-certifi which isn't installed dpkg: warning: ignoring request to remove 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python3.12-minimal (3.12.4-1) ... dpkg: warning: ignoring request to remove python3.9 which isn't installed Purging configuration files for python3.9-minimal (3.9.2-1) ... dpkg: warning: ignoring request to remove q2-taxa which isn't installed dpkg: warning: ignoring request to remove q2-types which isn't installed dpkg: warning: ignoring request to remove q2templates which isn't installed dpkg: warning: ignoring request to remove qiime which isn't installed Purging configuration files for r-base-core (4.4.1-1) ... dpkg: warning: ignoring request to remove r-bioc-biocgenerics which isn't installed dpkg: warning: ignoring request to remove r-bioc-decontam which isn't installed dpkg: warning: ignoring request to remove r-cran-cli which isn't installed dpkg: warning: ignoring request to remove r-cran-colorspace which isn't installed dpkg: warning: ignoring request to remove r-cran-fansi which isn't installed dpkg: warning: ignoring request to remove r-cran-farver which isn't installed dpkg: warning: ignoring request to remove r-cran-getopt which isn't installed dpkg: warning: ignoring request to remove r-cran-ggplot2 which isn't installed dpkg: warning: ignoring request to remove r-cran-glue which isn't installed dpkg: warning: ignoring request to remove r-cran-gtable which isn't installed dpkg: warning: ignoring request to remove r-cran-isoband which isn't installed dpkg: warning: ignoring request to remove r-cran-labeling which isn't installed dpkg: warning: ignoring request to remove r-cran-lattice which isn't installed dpkg: warning: ignoring request to remove r-cran-lifecycle which isn't installed dpkg: warning: ignoring request to remove r-cran-littler which isn't installed dpkg: warning: ignoring request to remove r-cran-magrittr which isn't installed dpkg: warning: ignoring request to remove r-cran-mass which isn't installed dpkg: warning: ignoring request to remove r-cran-matrix which isn't installed dpkg: warning: ignoring request to remove r-cran-mgcv which isn't installed dpkg: warning: ignoring request to remove r-cran-munsell which isn't installed dpkg: warning: ignoring request to remove r-cran-nlme which isn't installed dpkg: warning: ignoring request to remove r-cran-optparse which isn't installed dpkg: warning: ignoring request to remove r-cran-pillar which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgconfig which isn't installed dpkg: warning: ignoring request to remove r-cran-pkgkitten which isn't installed dpkg: warning: ignoring request to remove r-cran-plyr which isn't installed dpkg: warning: ignoring request to remove r-cran-r6 which isn't installed dpkg: warning: ignoring request to remove r-cran-rcolorbrewer which isn't installed dpkg: warning: ignoring request to remove r-cran-rcpp which isn't installed dpkg: warning: ignoring request to remove r-cran-reshape2 which isn't installed dpkg: warning: ignoring request to remove r-cran-rlang which isn't installed dpkg: warning: ignoring request to remove r-cran-scales which isn't installed dpkg: warning: ignoring request to remove r-cran-stringi which isn't installed dpkg: warning: ignoring request to remove r-cran-stringr which isn't installed dpkg: warning: ignoring request to remove r-cran-tibble which isn't installed dpkg: warning: ignoring request to remove r-cran-utf8 which isn't installed dpkg: warning: ignoring request to remove r-cran-vctrs which isn't installed dpkg: warning: ignoring request to remove r-cran-viridislite which isn't installed dpkg: warning: ignoring request to remove r-cran-withr which isn't installed Purging configuration files for readline-common (8.2-4) ... dpkg: warning: ignoring request to remove samtools which isn't installed dpkg: warning: ignoring request to remove sensible-utils which isn't installed dpkg: warning: ignoring request to remove tk8.6-blt2.5 which isn't installed dpkg: warning: ignoring request to remove ttf-bitstream-vera which isn't installed Purging configuration files for ucf (3.0043+nmu1) ... dpkg: warning: ignoring request to remove unicode-data which isn't installed Purging configuration files for unzip (6.0-28) ... dpkg: warning: ignoring request to remove vsearch which isn't installed Purging configuration files for x11-common (1:7.7+23) ... dpkg: warning: while removing x11-common, directory '/etc/init.d' not empty so not removed dpkg: warning: ignoring request to remove xdg-utils which isn't installed dpkg: warning: ignoring request to remove zip which isn't installed 4m34.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'dpkg', '--purge', 'blt', 'bowtie2', 'ca-certificates', 'cython3', 'fontconfig', 'fontconfig-config', 'fonts-dejavu-core', 'fonts-dejavu-mono', 'fonts-glyphicons-halflings', 'fonts-lyx', 'javascript-common', 'libaec0:amd64', 'libblas3:amd64', 'libbrotli1:amd64', 'libcairo2:amd64', 'libcares2:amd64', 'libcurl3t64-gnutls:amd64', 'libcurl4t64:amd64', 'libdatrie1:amd64', 'libdeflate0:amd64', 'libexpat1:amd64', 'libfontconfig1:amd64', 'libfreetype6:amd64', 'libfribidi0:amd64', 'libgdbm-compat4t64:amd64', 'libgdbm6t64:amd64', 'libgfortran5:amd64', 'libglib2.0-0t64:amd64', 'libgomp1:amd64', 'libgraphite2-3:amd64', 'libharfbuzz0b:amd64', 'libhdf5-103-1t64:amd64', 'libhdf5-hl-100t64:amd64', 'libhts3t64:amd64', 'libhtscodecs2:amd64', 'libice6:amd64', 'libicu67:amd64', 'libicu72:amd64', 'libimagequant0:amd64', 'libjbig0:amd64', 'libjpeg62-turbo:amd64', 'libjs-bootstrap', 'libjs-jquery', 'libjs-jquery-ui', 'libjs-popper.js', 'liblapack3:amd64', 'liblbfgsb0:amd64', 'liblcms2-2:amd64', 'libldap-2.4-2:amd64', 'libldap-2.5-0:amd64', 'liblerc4:amd64', 'liblmdb0:amd64', 'liblzf1:amd64', 'libmbedcrypto3:amd64', 'libmbedcrypto7t64:amd64', 'libmbedtls12:amd64', 'libmbedtls14t64:amd64', 'libmbedx509-0:amd64', 'libmbedx509-1t64:amd64', 'libmpdec3:amd64', 'libncurses6:amd64', 'libncursesw6:amd64', 'libnghttp2-14:amd64', 'libnode115:amd64', 'libnorm1t64:amd64', 'libopenblas-base:amd64', 'libopenblas0:amd64', 'libopenblas0-pthread:amd64', 'libopenjp2-7:amd64', 'libpango-1.0-0:amd64', 'libpangocairo-1.0-0:amd64', 'libpangoft2-1.0-0:amd64', 'libpaper-utils', 'libpaper1:amd64', 'libperl5.32:amd64', 'libperl5.38t64:amd64', 'libpgm-5.3-0t64:amd64', 'libpixman-1-0:amd64', 'libpng16-16t64:amd64', 'libproc2-0:amd64', 'libprocps8:amd64', 'libpsl5t64:amd64', 'libpython3-stdlib:amd64', 'libpython3.12-minimal:amd64', 'libpython3.12-stdlib:amd64', 'libpython3.9-minimal:amd64', 'libpython3.9-stdlib:amd64', 'libqhull-r8.0:amd64', 'libquadmath0:amd64', 'libraqm0:amd64', 'libreadline8t64:amd64', 'librtmp1:amd64', 'libsasl2-2:amd64', 'libsasl2-modules-db:amd64', 'libsharpyuv0:amd64', 'libsm6:amd64', 'libsodium23:amd64', 'libsqlite3-0:amd64', 'libssh2-1t64:amd64', 'libssw0:amd64', 'libsz2:amd64', 'libtbb2:amd64', 'libtcl8.6:amd64', 'libthai-data', 'libthai0:amd64', 'libtiff5:amd64', 'libtiff6:amd64', 'libtk8.6:amd64', 'libuv1t64:amd64', 'libwebp6:amd64', 'libwebp7:amd64', 'libwebpdemux2:amd64', 'libwebpmux3:amd64', 'libx11-6:amd64', 'libx11-data', 'libxau6:amd64', 'libxcb-render0:amd64', 'libxcb-shm0:amd64', 'libxcb1:amd64', 'libxdmcp6:amd64', 'libxext6:amd64', 'libxft2:amd64', 'libxml2:amd64', 'libxrender1:amd64', 'libxslt1.1:amd64', 'libxss1:amd64', 'libxt6t64:amd64', 'libyajl2:amd64', 'libyaml-0-2:amd64', 'libzmq5:amd64', 'littler', 'mailcap', 'media-types', 'mime-support', 'ncbi-blast+', 'ncbi-data', 'netbase', 'node-acorn', 'node-cjs-module-lexer', 'node-d3-color', 'node-d3-interpolate', 'node-d3-scale-chromatic', 'node-fortawesome-fontawesome-free', 'node-natural-sort', 'node-normalize.css', 'node-thenby', 'node-undici', 'node-xtend', 'nodejs', 'openssl', 'perl', 'perl-modules-5.32', 'perl-modules-5.38', 'procps', 'python-matplotlib-data', 'python3', 'python3-appdirs', 'python3-asttokens', 'python3-attr', 'python3-backcall', 'python3-bcrypt', 'python3-bibtexparser', 'python3-biom-format', 'python3-blinker', 'python3-brotli', 'python3-cachecontrol', 'python3-certifi', 'python3-cffi-backend:amd64', 'python3-chardet', 'python3-charset-normalizer', 'python3-click', 'python3-colorama', 'python3-contourpy', 'python3-cryptography', 'python3-cycler', 'python3-dateutil', 'python3-decorator', 'python3-dill', 'python3-distutils', 'python3-executing', 'python3-filelock', 'python3-flask', 'python3-flask-sqlalchemy', 'python3-flufl.lock', 'python3-fonttools', 'python3-fs', 'python3-future', 'python3-globus-sdk', 'python3-greenlet', 'python3-h5py', 'python3-h5py-serial', 'python3-hdmedians', 'python3-idna', 'python3-ijson', 'python3-ipython', 'python3-ipython-genutils', 'python3-itsdangerous', 'python3-jedi', 'python3-jinja2', 'python3-joblib', 'python3-jwt', 'python3-kiwisolver', 'python3-lib2to3', 'python3-lockfile', 'python3-lxml:amd64', 'python3-lz4', 'python3-markupsafe', 'python3-matplotlib', 'python3-matplotlib-inline', 'python3-minimal', 'python3-mpmath', 'python3-msgpack', 'python3-nacl', 'python3-natsort', 'python3-networkx', 'python3-numpy', 'python3-packaging', 'python3-pandas', 'python3-pandas-lib:amd64', 'python3-paramiko', 'python3-parsl', 'python3-parso', 'python3-pexpect', 'python3-pickleshare', 'python3-pil:amd64', 'python3-pil.imagetk:amd64', 'python3-pkg-resources', 'python3-platformdirs', 'python3-prompt-toolkit', 'python3-psutil', 'python3-ptyprocess', 'python3-public', 'python3-pure-eval', 'python3-py', 'python3-pygments', 'python3-pyparsing', 'python3-requests', 'python3-scipy', 'python3-seaborn', 'python3-setproctitle:amd64', 'python3-setuptools', 'python3-six', 'python3-skbio', 'python3-sklearn', 'python3-sklearn-lib:amd64', 'python3-sqlalchemy', 'python3-stack-data', 'python3-sympy', 'python3-tblib', 'python3-threadpoolctl', 'python3-tk:amd64', 'python3-tomlkit', 'python3-traitlets', 'python3-typeguard', 'python3-typeshed', 'python3-typing-extensions', 'python3-tz', 'python3-tzlocal', 'python3-ufolib2', 'python3-unicodedata2', 'python3-urllib3', 'python3-wcwidth', 'python3-werkzeug', 'python3-yaml', 'python3-zmq', 'python3.12', 'python3.12-minimal', 'python3.9', 'python3.9-minimal', 'q2-taxa', 'q2-types', 'q2templates', 'qiime', 'r-base-core', 'r-bioc-biocgenerics', 'r-bioc-decontam', 'r-cran-cli', 'r-cran-colorspace', 'r-cran-fansi', 'r-cran-farver', 'r-cran-getopt', 'r-cran-ggplot2', 'r-cran-glue', 'r-cran-gtable', 'r-cran-isoband', 'r-cran-labeling', 'r-cran-lattice', 'r-cran-lifecycle', 'r-cran-littler', 'r-cran-magrittr', 'r-cran-mass', 'r-cran-matrix', 'r-cran-mgcv', 'r-cran-munsell', 'r-cran-nlme', 'r-cran-optparse', 'r-cran-pillar', 'r-cran-pkgconfig', 'r-cran-pkgkitten', 'r-cran-plyr', 'r-cran-r6', 'r-cran-rcolorbrewer', 'r-cran-rcpp', 'r-cran-reshape2', 'r-cran-rlang', 'r-cran-scales', 'r-cran-stringi', 'r-cran-stringr', 'r-cran-tibble', 'r-cran-utf8', 'r-cran-vctrs', 'r-cran-viridislite', 'r-cran-withr', 'readline-common', 'samtools', 'sensible-utils', 'tk8.6-blt2.5', 'ttf-bitstream-vera', 'ucf', 'unicode-data', 'unzip', 'vsearch', 'x11-common', 'xdg-utils', 'zip'] 4m34.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'dpkg', '--purge', 'q2-quality-control'] 4m34.4s DUMP: dpkg: warning: ignoring request to remove q2-quality-control which isn't installed 4m34.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'dpkg', '--purge', 'q2-quality-control'] 4m34.4s INFO: Running scripts post_purge 4m34.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_purge_exceptions'] 4m34.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_purge_exceptions'] 4m34.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'dpkg', '--purge', '--pending'] 4m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'dpkg', '--purge', '--pending'] 4m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'dpkg', '--remove', '--pending'] 4m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'dpkg', '--remove', '--pending'] 4m34.5s INFO: Running scripts post_test 4m34.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_test_exceptions'] 4m34.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'tmp/scripts/post_test_exceptions'] 4m34.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti'] 4m34.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti'] 4m34.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'dpkg-divert', '--list'] 4m34.8s DUMP: diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64 local diversion of /bin/sync to /bin/sync.distrib.usr-is-merged diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64 local diversion of /home to /home.distrib diversion of /lib64/ld-linux-x86-64.so.2 to /lib64/ld-linux-x86-64.so.2.usr-is-merged by libc6 diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64 diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64 diversion of /libx32 to /.libx32.usr-is-merged by base-files local diversion of /usr/bin/sync to /usr/bin/sync.distrib diversion of /lib32 to /.lib32.usr-is-merged by base-files diversion of /libo32 to /.libo32.usr-is-merged by base-files diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64 diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64 4m34.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'dpkg-divert', '--list'] 4m34.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-get', 'clean'] 4m34.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti', 'apt-get', 'clean'] 4m34.9s DEBUG: Recording chroot state 4m35.6s INFO: Warning: Package purging left files on system: /etc/fonts/ owned by: fontconfig-config, fonts-dejavu-core, fonts-dejavu-mono /etc/fonts/conf.d/ owned by: fontconfig-config, fonts-dejavu-core, fonts-dejavu-mono /etc/fonts/conf.d/70-no-bitmaps-except-emoji.conf -> /usr/share/fontconfig/conf.avail/70-no-bitmaps-except-emoji.conf not owned 4m35.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti/dev/shm'] 4m35.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti/dev/shm'] 4m35.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti/dev/console'] 4m35.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti/dev/console'] 4m35.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti/dev/ptmx'] 4m35.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti/dev/ptmx'] 4m35.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti/dev/pts'] 4m35.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti/dev/pts'] 4m35.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti/proc'] 4m36.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti/proc'] 4m36.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti'] 4m36.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp8p4ck1ti'] 4m36.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp8p4ck1ti 4m36.2s INFO: PASS: Upgrading between Debian distributions. 4m36.2s INFO: PASS: All tests. 4m36.2s INFO: piuparts run ends. ret=0 End: 2024-06-26 16:17:10 GMT